AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040533.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040533.01.T01 MTR_7g092270 82.143 252 19 3 22 248 1 251 1.07e-140 395
MsG0780040533.01.T01 MTR_3g028600 34.634 205 98 5 22 205 1 190 4.87e-21 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040533.01.T01 AT3G52110 33.603 247 107 11 22 244 1 214 4.31e-23 95.1
MsG0780040533.01.T01 AT3G52110 33.065 248 107 11 22 244 1 214 1.59e-22 94.7
MsG0780040533.01.T01 AT3G52110 33.603 247 107 11 22 244 1 214 1.64e-22 94.7
MsG0780040533.01.T01 AT3G52110 33.065 248 107 11 22 244 1 214 3.26e-22 94.4

Find 67 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGAAATTCTTCCATTTA+AGG 0.096477 7:-78851338 MsG0780040533.01.T01:CDS
GATCTTCTATTACTTCTTTC+AGG 0.129146 7:+78850760 None:intergenic
AAACTTTACTGTAACAAATT+TGG 0.131238 7:-78850881 MsG0780040533.01.T01:CDS
CTTGAACAATTGGGTCTTCT+AGG 0.208167 7:+78850937 None:intergenic
CTTCGATTTCTATCCTTAAA+TGG 0.242020 7:+78851325 None:intergenic
ATCCATGTTTCTTGAACAAT+TGG 0.261018 7:+78850927 None:intergenic
ACAATGGAATCAATAATCTA+TGG 0.265451 7:-78854260 MsG0780040533.01.T01:CDS
GGAAAATCCTTCAGCTGTTA+AGG 0.334128 7:-78850971 MsG0780040533.01.T01:CDS
AAATTTGTTACAGTAAAGTT+TGG 0.339133 7:+78850883 None:intergenic
TTGTTGATGATGATGAAATC+TGG 0.344812 7:-78851665 MsG0780040533.01.T01:CDS
GCAGGCAAAGTTATTAAGAT+TGG 0.355508 7:-78851367 MsG0780040533.01.T01:intron
CAACGGCTTCTTTAGCTTGT+TGG 0.356140 7:+78850849 None:intergenic
AGAATTGAAGGAAAAGAGTA+AGG 0.363655 7:-78850572 MsG0780040533.01.T01:CDS
CTCAAAATTTATTGGGTGGC+AGG 0.386361 7:-78850714 MsG0780040533.01.T01:CDS
AGCAGAGAGATCAACCCATT+TGG 0.390275 7:+78851704 None:intergenic
TGGAACCAGAAAACATTGAT+TGG 0.393800 7:-78851782 MsG0780040533.01.T01:CDS
AATCTATGGGTCATGTTAAC+CGG 0.407345 7:-78854246 MsG0780040533.01.T01:CDS
GTCATGTTAACCGGTGCCCC+CGG 0.419453 7:-78854237 MsG0780040533.01.T01:CDS
ATCATCAACAAGAGGCTCAT+TGG 0.420743 7:+78851677 None:intergenic
GCAGAGAGATCAACCCATTT+GGG 0.436277 7:+78851705 None:intergenic
AGAACTTCGACGCGCCCAAA+TGG 0.439641 7:-78851719 MsG0780040533.01.T01:CDS
ATGGAAGAATTTCAGAAAGC+TGG 0.446458 7:+78851344 None:intergenic
GGTTCCTTAACCAGTGCCCC+GGG 0.451453 7:+78854219 None:intergenic
GAGAAGGGCTCAAATTCAAA+TGG 0.468513 7:-78850604 MsG0780040533.01.T01:CDS
AAGTAAATGCACTTTGACAA+TGG 0.471496 7:-78854276 None:intergenic
GAAATTCTAAGTCAAATCAC+AGG 0.477001 7:-78850691 MsG0780040533.01.T01:CDS
CTGTAACAAATTTGGATGGT+GGG 0.481657 7:-78850873 MsG0780040533.01.T01:CDS
TGGAGTGTTAGAAGAATTGA+AGG 0.486427 7:-78850584 MsG0780040533.01.T01:CDS
CCCTTGCTTGTTGTCAAGGA+AGG 0.489257 7:-78850532 MsG0780040533.01.T01:CDS
TCCATGTTTCTTGAACAATT+GGG 0.492758 7:+78850928 None:intergenic
GGTACCCTTGCTTGTTGTCA+AGG 0.495287 7:-78850536 MsG0780040533.01.T01:CDS
AGGAAGGGTTCTACTAAGAA+AGG 0.503091 7:-78850637 MsG0780040533.01.T01:CDS
GAACTTCGACGCGCCCAAAT+GGG 0.504380 7:-78851718 MsG0780040533.01.T01:CDS
AGGTTCCTTAACCAGTGCCC+CGG 0.506638 7:+78854218 None:intergenic
TCACAATCCTTAACAGCTGA+AGG 0.510472 7:+78850964 None:intergenic
CAATGGAATCAATAATCTAT+GGG 0.522106 7:-78854259 MsG0780040533.01.T01:CDS
AGAGTAAGGGACGCAAAGAA+AGG 0.522658 7:-78850558 MsG0780040533.01.T01:CDS
GGAACCAGAAAACATTGATT+GGG 0.532486 7:-78851781 MsG0780040533.01.T01:CDS
TCAAAATTTATTGGGTGGCA+GGG 0.533924 7:-78850713 MsG0780040533.01.T01:CDS
TTTACTGTAACAAATTTGGA+TGG 0.540080 7:-78850877 MsG0780040533.01.T01:CDS
ACTGTAACAAATTTGGATGG+TGG 0.552283 7:-78850874 MsG0780040533.01.T01:CDS
GAGTAAGGGACGCAAAGAAA+GGG 0.559077 7:-78850557 MsG0780040533.01.T01:CDS
GAATTGAAGGAAAAGAGTAA+GGG 0.560426 7:-78850571 MsG0780040533.01.T01:CDS
CCCTTCCTTGACAACAAGCA+AGG 0.563680 7:+78850531 None:intergenic
GTAAGTATCATCATGAATGA+AGG 0.565055 7:+78851743 None:intergenic
ACCCAATTGTTCAAGAAACA+TGG 0.569834 7:-78850929 MsG0780040533.01.T01:CDS
ATCAACAAGAGGCTCATTGG+AGG 0.575042 7:+78851680 None:intergenic
CCTTGCTTGTTGTCAAGGAA+GGG 0.590167 7:-78850531 MsG0780040533.01.T01:CDS
GAAGAGGCTAGCAACAAGGA+AGG 0.590240 7:-78850653 MsG0780040533.01.T01:CDS
AGGGTTCTACTAAGAAAGGA+GGG 0.601335 7:-78850633 MsG0780040533.01.T01:CDS
GGGTTCTACTAAGAAAGGAG+GGG 0.602916 7:-78850632 MsG0780040533.01.T01:CDS
AGTATCATCATGAATGAAGG+TGG 0.603485 7:+78851746 None:intergenic
TCAGCTCAAAATTTATTGGG+TGG 0.604858 7:-78850718 MsG0780040533.01.T01:CDS
GGTTCTACTAAGAAAGGAGG+GGG 0.607034 7:-78850631 MsG0780040533.01.T01:CDS
CTTCTATTACTTCTTTCAGG+AGG 0.613198 7:+78850763 None:intergenic
AAGAGGCTAGCAACAAGGAA+GGG 0.620914 7:-78850652 MsG0780040533.01.T01:CDS
ATTTCATCATCATCAACAAG+AGG 0.621768 7:+78851669 None:intergenic
AATTGAAGAGGCTAGCAACA+AGG 0.623685 7:-78850657 MsG0780040533.01.T01:CDS
AGCTAAAGAAGCCGTTGTTG+AGG 0.625737 7:-78850843 MsG0780040533.01.T01:CDS
TTTGACTTTGACCTCAACAA+CGG 0.631431 7:+78850832 None:intergenic
CCTTCCTTGACAACAAGCAA+GGG 0.639988 7:+78850532 None:intergenic
TTCCTTAACCAGTGCCCCGG+GGG 0.645404 7:+78854221 None:intergenic
AAGGGTTCTACTAAGAAAGG+AGG 0.646202 7:-78850634 MsG0780040533.01.T01:CDS
GTTCCTTAACCAGTGCCCCG+GGG 0.650690 7:+78854220 None:intergenic
CATTTAAGGATAGAAATCGA+AGG 0.656115 7:-78851324 MsG0780040533.01.T01:intron
AAATTCTAAGTCAAATCACA+GGG 0.672961 7:-78850690 MsG0780040533.01.T01:CDS
GTTCTACTAAGAAAGGAGGG+GGG 0.794134 7:-78850630 MsG0780040533.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGTAGTAATTATTATTT+TGG + Chr7:78850665-78850684 None:intergenic 10.0%
!!! AACAACAAAATAATTTTATT+AGG + Chr7:78852217-78852236 None:intergenic 10.0%
!!! TTAATTAATTTTTCAACAAA+GGG - Chr7:78852748-78852767 MsG0780040533.01.T01:intron 10.0%
!! AAAATAAATTCATGATGAAT+TGG + Chr7:78852448-78852467 None:intergenic 15.0%
!! AAATAAATTCATGATGAATT+GGG + Chr7:78852447-78852466 None:intergenic 15.0%
!! ACCATGAAATTAATATATTT+AGG - Chr7:78852272-78852291 MsG0780040533.01.T01:intron 15.0%
!! ATTATGTTGTATATGTATTA+GGG - Chr7:78853800-78853819 MsG0780040533.01.T01:intron 15.0%
!! TAAATATATTAATTTCATGG+TGG + Chr7:78852273-78852292 None:intergenic 15.0%
!! TATTATGTTGTATATGTATT+AGG - Chr7:78853799-78853818 MsG0780040533.01.T01:intron 15.0%
!! TCCTAAATATATTAATTTCA+TGG + Chr7:78852276-78852295 None:intergenic 15.0%
!!! ATTGCATAATTTTTAGTTTT+TGG + Chr7:78853372-78853391 None:intergenic 15.0%
!!! CTTAATTAATTTTTCAACAA+AGG - Chr7:78852747-78852766 MsG0780040533.01.T01:intron 15.0%
!!! GTATCATATTAGTAATTTTA+TGG + Chr7:78853647-78853666 None:intergenic 15.0%
!!! TATACTCTAAAATATAGAAA+GGG - Chr7:78852606-78852625 MsG0780040533.01.T01:intron 15.0%
!!! TCTTTTTAATAGATTTGATT+TGG + Chr7:78853496-78853515 None:intergenic 15.0%
!!! TTTTATTTTTATTAGTGAGA+CGG - Chr7:78851396-78851415 MsG0780040533.01.T01:intron 15.0%
!! AAACTTTACTGTAACAAATT+TGG - Chr7:78853911-78853930 MsG0780040533.01.T01:intron 20.0%
!! AATATATTCAATGTAACGTT+TGG + Chr7:78852718-78852737 None:intergenic 20.0%
!! AATCCAAAAGAAAAATTCAA+TGG + Chr7:78852332-78852351 None:intergenic 20.0%
!! ACTCAATCAAGAAAAAAAAA+TGG + Chr7:78852544-78852563 None:intergenic 20.0%
!! AGCTAAGTTAAAATAGATTA+TGG + Chr7:78850729-78850748 None:intergenic 20.0%
!! ATATATTCAATGTAACGTTT+GGG + Chr7:78852717-78852736 None:intergenic 20.0%
!! ATCCAAAAGAAAAATTCAAT+GGG + Chr7:78852331-78852350 None:intergenic 20.0%
!! GAAATAACATTAATAAATCG+AGG - Chr7:78851267-78851286 MsG0780040533.01.T01:intron 20.0%
!! GCTAAGTTAAAATAGATTAT+GGG + Chr7:78850728-78850747 None:intergenic 20.0%
!! TACTAATATGATACATTCAA+AGG - Chr7:78853653-78853672 MsG0780040533.01.T01:intron 20.0%
!! TGAGAAAAAAACAAAAATTG+AGG + Chr7:78853319-78853338 None:intergenic 20.0%
!! TTCTGTTAATGTAATGATAA+TGG + Chr7:78852925-78852944 None:intergenic 20.0%
!!! AAATTTGTTACAGTAAAGTT+TGG + Chr7:78853912-78853931 None:intergenic 20.0%
!!! ATTTTCAGCTCAAAATTTAT+TGG - Chr7:78854070-78854089 MsG0780040533.01.T01:intron 20.0%
!!! CTATACTCTAAAATATAGAA+AGG - Chr7:78852605-78852624 MsG0780040533.01.T01:intron 20.0%
!!! TAAAAAGAGTAAAGCTATTT+TGG - Chr7:78853508-78853527 MsG0780040533.01.T01:intron 20.0%
!!! TATCTTTGAATGTGTTATTA+TGG - Chr7:78853588-78853607 MsG0780040533.01.T01:intron 20.0%
!!! TCTTAGCTTTAGTTTTTTAA+GGG + Chr7:78853754-78853773 None:intergenic 20.0%
!!! TCTTTTTTTAACTTTTCAGA+TGG - Chr7:78852990-78853009 MsG0780040533.01.T01:intron 20.0%
!!! TTCTTAGCTTTAGTTTTTTA+AGG + Chr7:78853755-78853774 None:intergenic 20.0%
!!! TTTATTTTTATTAGTGAGAC+GGG - Chr7:78851397-78851416 MsG0780040533.01.T01:intron 20.0%
!!! TTTTCAGCTCAAAATTTATT+GGG - Chr7:78854071-78854090 MsG0780040533.01.T01:intron 20.0%
! AAAAAGCGATAATACATTGA+AGG + Chr7:78853535-78853554 None:intergenic 25.0%
! AAATTCTAAGTCAAATCACA+GGG - Chr7:78854102-78854121 MsG0780040533.01.T01:intron 25.0%
! ACAATGGAATCAATAATCTA+TGG - Chr7:78850532-78850551 MsG0780040533.01.T01:CDS 25.0%
! ATAAATAGAGTGATCTTGTT+CGG - Chr7:78852064-78852083 MsG0780040533.01.T01:intron 25.0%
! CAAATAGTACTTTACTACTT+TGG + Chr7:78851248-78851267 None:intergenic 25.0%
! CAATGGAATCAATAATCTAT+GGG - Chr7:78850533-78850552 MsG0780040533.01.T01:CDS 25.0%
! CTGAAAAGTTAAAAAAAGAG+AGG + Chr7:78852989-78853008 None:intergenic 25.0%
! GAAAAAATTTGAACATTTCG+AGG + Chr7:78851918-78851937 None:intergenic 25.0%
! GTATATTTATCAATGCCAAT+GGG + Chr7:78852375-78852394 None:intergenic 25.0%
! TAAAGCAATACAATATGACA+AGG + Chr7:78850792-78850811 None:intergenic 25.0%
! TATATTTATCAATGCCAATG+GGG + Chr7:78852374-78852393 None:intergenic 25.0%
! TCCAAAAGAAAAATTCAATG+GGG + Chr7:78852330-78852349 None:intergenic 25.0%
! TGTATATTTATCAATGCCAA+TGG + Chr7:78852376-78852395 None:intergenic 25.0%
! TTATACATATCTACTAGCAT+AGG - Chr7:78852469-78852488 MsG0780040533.01.T01:intron 25.0%
! TTGTAATTTATCTGCATTCA+GGG + Chr7:78851660-78851679 None:intergenic 25.0%
! TTTACTGTAACAAATTTGGA+TGG - Chr7:78853915-78853934 MsG0780040533.01.T01:intron 25.0%
! TTTGTAATTTATCTGCATTC+AGG + Chr7:78851661-78851680 None:intergenic 25.0%
!! AGTATCTCTTTTACTTACAT+CGG - Chr7:78852159-78852178 MsG0780040533.01.T01:intron 25.0%
!! CGAAAATTCTAATACTTTTC+CGG - Chr7:78851502-78851521 MsG0780040533.01.T01:intron 25.0%
!! TCTAAAATATAGAAAGGGAA+AGG - Chr7:78852611-78852630 MsG0780040533.01.T01:intron 25.0%
!!! ATTATCTTCATTTTTCTTGC+AGG - Chr7:78853407-78853426 MsG0780040533.01.T01:intron 25.0%
!!! TGTTGTGATGTTTGTTTTTT+GGG + Chr7:78850894-78850913 None:intergenic 25.0%
!!! TTATTTTTATTAGTGAGACG+GGG - Chr7:78851398-78851417 MsG0780040533.01.T01:intron 25.0%
!!! TTCATCTTTGTTTTTCTCTA+TGG + Chr7:78852574-78852593 None:intergenic 25.0%
!!! TTCTGAAATTCTTCCATTTA+AGG - Chr7:78853454-78853473 MsG0780040533.01.T01:intron 25.0%
!!! TTGTTGTGATGTTTGTTTTT+TGG + Chr7:78850895-78850914 None:intergenic 25.0%
AAAAATTGAGGTAGTAACCT+TGG + Chr7:78853307-78853326 None:intergenic 30.0%
AAGAAGATCTTGAGAAATCT+TGG + Chr7:78853256-78853275 None:intergenic 30.0%
AATATCAAACGATTCTCTCT+TGG + Chr7:78852690-78852709 None:intergenic 30.0%
ACAAATGAAGTTGTATTGTG+TGG + Chr7:78852852-78852871 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG + Chr7:78851689-78851708 None:intergenic 30.0%
AGAAGATCTTGAGAAATCTT+GGG + Chr7:78853255-78853274 None:intergenic 30.0%
AGAATTGAAGGAAAAGAGTA+AGG - Chr7:78854220-78854239 MsG0780040533.01.T01:intron 30.0%
AGATTATGGGTAATGTTAAC+CGG + Chr7:78850715-78850734 None:intergenic 30.0%
ATAGTACTTTACTACTTTGG+TGG + Chr7:78851245-78851264 None:intergenic 30.0%
ATCCATGTTTCTTGAACAAT+TGG + Chr7:78853868-78853887 None:intergenic 30.0%
ATTTCATCATCATCAACAAG+AGG + Chr7:78853126-78853145 None:intergenic 30.0%
CAAAATTGCAATCATGTCTA+TGG + Chr7:78852506-78852525 None:intergenic 30.0%
CATTTAACGATGTTATACCA+AGG + Chr7:78852040-78852059 None:intergenic 30.0%
CATTTAAGGATAGAAATCGA+AGG - Chr7:78853468-78853487 MsG0780040533.01.T01:intron 30.0%
CTTCGATTTCTATCCTTAAA+TGG + Chr7:78853470-78853489 None:intergenic 30.0%
CTTGGTATAACATCGTTAAA+TGG - Chr7:78852038-78852057 MsG0780040533.01.T01:intron 30.0%
GAAATTCTAAGTCAAATCAC+AGG - Chr7:78854101-78854120 MsG0780040533.01.T01:intron 30.0%
GAATTGAAGGAAAAGAGTAA+GGG - Chr7:78854221-78854240 MsG0780040533.01.T01:intron 30.0%
GATCTTCTATTACTTCTTTC+AGG + Chr7:78854035-78854054 None:intergenic 30.0%
GTAAGTATCATCATGAATGA+AGG + Chr7:78853052-78853071 None:intergenic 30.0%
TATTAACAAAGTCATTCTCC+TGG - Chr7:78852657-78852676 MsG0780040533.01.T01:intron 30.0%
TATTTCGCAAAGAAAAGTCT+TGG - Chr7:78851320-78851339 MsG0780040533.01.T01:intron 30.0%
TCCATGTTTCTTGAACAATT+GGG + Chr7:78853867-78853886 None:intergenic 30.0%
TTAGCTACTTCCTTAGTTAT+AGG - Chr7:78850743-78850762 MsG0780040533.01.T01:CDS 30.0%
TTGCAATTTCTCTTCATTCA+AGG - Chr7:78851810-78851829 MsG0780040533.01.T01:intron 30.0%
! AAAGGAGTGTATAAGCAAAA+AGG - Chr7:78852629-78852648 MsG0780040533.01.T01:intron 30.0%
! AAGGAGTGTATAAGCAAAAA+GGG - Chr7:78852630-78852649 MsG0780040533.01.T01:intron 30.0%
! ACCCCATTGAATTTTTCTTT+TGG - Chr7:78852326-78852345 MsG0780040533.01.T01:intron 30.0%
! TCACAGTGCACAAATTTTAA+AGG + Chr7:78851098-78851117 None:intergenic 30.0%
! TTTTCGTGCCAATTAATTCT+TGG - Chr7:78851933-78851952 MsG0780040533.01.T01:intron 30.0%
! TTTTGCAGGTATATCCATTA+AGG - Chr7:78852415-78852434 MsG0780040533.01.T01:intron 30.0%
!! AAAAGGTATTTGGGTTAGTT+GGG - Chr7:78851890-78851909 MsG0780040533.01.T01:intron 30.0%
!! AATATATGCTTAGCTTTTGC+AGG - Chr7:78852401-78852420 MsG0780040533.01.T01:intron 30.0%
!! ATGAGCTATCATTGTTTCTA+AGG - Chr7:78851216-78851235 MsG0780040533.01.T01:intron 30.0%
!! TATTCAAAGTGGGTTGAAAA+GGG - Chr7:78851586-78851605 MsG0780040533.01.T01:intron 30.0%
!! TGTTCGGAATGTATTTTGAA+TGG - Chr7:78852080-78852099 MsG0780040533.01.T01:intron 30.0%
!! TTCTAGCTCAATTTCTTTGA+TGG - Chr7:78853183-78853202 MsG0780040533.01.T01:intron 30.0%
!! TTGTTGATGATGATGAAATC+TGG - Chr7:78853127-78853146 MsG0780040533.01.T01:intron 30.0%
!!! CTTTGTTTTTCTCTATGGAA+GGG + Chr7:78852569-78852588 None:intergenic 30.0%
!!! GTTGTGATGTTTGTTTTTTG+GGG + Chr7:78850893-78850912 None:intergenic 30.0%
!!! TCTTTGTTTTTCTCTATGGA+AGG + Chr7:78852570-78852589 None:intergenic 30.0%
AATAAATCGAGGCAAGAAGA+GGG - Chr7:78851278-78851297 MsG0780040533.01.T01:intron 35.0%
AATCTATGGGTCATGTTAAC+CGG - Chr7:78850546-78850565 MsG0780040533.01.T01:CDS 35.0%
ACCCAATTGTTCAAGAAACA+TGG - Chr7:78853863-78853882 MsG0780040533.01.T01:intron 35.0%
ACCTATGATCAAGAATGAGA+CGG - Chr7:78851460-78851479 MsG0780040533.01.T01:intron 35.0%
ACTAACGAAGTTTGCATTCA+GGG + Chr7:78851721-78851740 None:intergenic 35.0%
ACTGTAACAAATTTGGATGG+TGG - Chr7:78853918-78853937 MsG0780040533.01.T01:intron 35.0%
AGGAAGAAGTTTATCACACA+AGG + Chr7:78851546-78851565 None:intergenic 35.0%
AGTATCATCATGAATGAAGG+TGG + Chr7:78853049-78853068 None:intergenic 35.0%
ATGATGCATGCCTATAACTA+AGG + Chr7:78850756-78850775 None:intergenic 35.0%
ATGGAAGAATTTCAGAAAGC+TGG + Chr7:78853451-78853470 None:intergenic 35.0%
CAGTACACATACATAGACAA+TGG + Chr7:78850844-78850863 None:intergenic 35.0%
CTCAAAAAACAACACCTCTT+TGG - Chr7:78852890-78852909 MsG0780040533.01.T01:intron 35.0%
CTGTAACAAATTTGGATGGT+GGG - Chr7:78853919-78853938 MsG0780040533.01.T01:intron 35.0%
CTTCTATTACTTCTTTCAGG+AGG + Chr7:78854032-78854051 None:intergenic 35.0%
GAAGCCTTCCAAGAATTAAT+TGG + Chr7:78851944-78851963 None:intergenic 35.0%
GAATTGGGTATGAACCTTAA+TGG + Chr7:78852432-78852451 None:intergenic 35.0%
GACTAACAAAGTCTACATTC+AGG + Chr7:78851690-78851709 None:intergenic 35.0%
GCAGGCAAAGTTATTAAGAT+TGG - Chr7:78853425-78853444 MsG0780040533.01.T01:intron 35.0%
TAATAAATCGAGGCAAGAAG+AGG - Chr7:78851277-78851296 MsG0780040533.01.T01:intron 35.0%
TATACAAGAGAAAACGTGAC+AGG + Chr7:78850815-78850834 None:intergenic 35.0%
TCAAAATTTATTGGGTGGCA+GGG - Chr7:78854079-78854098 MsG0780040533.01.T01:intron 35.0%
TCAGCTCAAAATTTATTGGG+TGG - Chr7:78854074-78854093 MsG0780040533.01.T01:intron 35.0%
TCTACCAACTAAACACAATC+TGG + Chr7:78852017-78852036 None:intergenic 35.0%
TGGAACCAGAAAACATTGAT+TGG - Chr7:78853010-78853029 MsG0780040533.01.T01:intron 35.0%
TGTTCCAGATTGTGTTTAGT+TGG - Chr7:78852010-78852029 MsG0780040533.01.T01:intron 35.0%
TTACAACAAATTCGACCGTT+GGG + Chr7:78852775-78852794 None:intergenic 35.0%
TTTACAACAAATTCGACCGT+TGG + Chr7:78852776-78852795 None:intergenic 35.0%
! GGAACCAGAAAACATTGATT+GGG - Chr7:78853011-78853030 MsG0780040533.01.T01:intron 35.0%
! TGGAGTGTTAGAAGAATTGA+AGG - Chr7:78854208-78854227 MsG0780040533.01.T01:intron 35.0%
! TTGTCCCAATCAATGTTTTC+TGG + Chr7:78853018-78853037 None:intergenic 35.0%
! TTTGACTTTGACCTCAACAA+CGG + Chr7:78853963-78853982 None:intergenic 35.0%
!! ATTCAAAGTGGGTTGAAAAG+GGG - Chr7:78851587-78851606 MsG0780040533.01.T01:intron 35.0%
!! GAAAAGGTATTTGGGTTAGT+TGG - Chr7:78851889-78851908 MsG0780040533.01.T01:intron 35.0%
!! GTATTCAAAGTGGGTTGAAA+AGG - Chr7:78851585-78851604 MsG0780040533.01.T01:intron 35.0%
!! TTTTAAAAGAGTTGCCCCAT+TGG - Chr7:78852357-78852376 MsG0780040533.01.T01:intron 35.0%
!!! TGATGTTTGTTTTTTGGGGT+GGG + Chr7:78850889-78850908 None:intergenic 35.0%
AAGGGTTCTACTAAGAAAGG+AGG - Chr7:78854158-78854177 MsG0780040533.01.T01:intron 40.0%
AATGGTTGAAACAGCCAAAG+AGG + Chr7:78852907-78852926 None:intergenic 40.0%
AATTGAAGAGGCTAGCAACA+AGG - Chr7:78854135-78854154 MsG0780040533.01.T01:intron 40.0%
ACTAAAGTGACTAATTCCCC+GGG - Chr7:78851864-78851883 MsG0780040533.01.T01:intron 40.0%
ACTAACGGAGTCTACATTCA+GGG + Chr7:78851753-78851772 None:intergenic 40.0%
ACTTGTCACTCACATATACG+TGG - Chr7:78851019-78851038 MsG0780040533.01.T01:intron 40.0%
ACTTTAGTCCCTGAATCGAA+AGG - Chr7:78851618-78851637 MsG0780040533.01.T01:intron 40.0%
AGGAAGGGTTCTACTAAGAA+AGG - Chr7:78854155-78854174 MsG0780040533.01.T01:intron 40.0%
AGGGTTCTACTAAGAAAGGA+GGG - Chr7:78854159-78854178 MsG0780040533.01.T01:intron 40.0%
ATACCCACACTCAAAGAAGT+AGG + Chr7:78851569-78851588 None:intergenic 40.0%
ATCACACAAGGCGACATATA+AGG + Chr7:78851534-78851553 None:intergenic 40.0%
ATCATCAACAAGAGGCTCAT+TGG + Chr7:78853118-78853137 None:intergenic 40.0%
CAAAGCAAACACCTTACACT+AGG + Chr7:78852131-78852150 None:intergenic 40.0%
CGTGCCAATTAATTCTTGGA+AGG - Chr7:78851937-78851956 MsG0780040533.01.T01:intron 40.0%
CTCAAAATTTATTGGGTGGC+AGG - Chr7:78854078-78854097 MsG0780040533.01.T01:intron 40.0%
CTTGAACAATTGGGTCTTCT+AGG + Chr7:78853858-78853877 None:intergenic 40.0%
CTTTAGTCCCTGAATCGAAA+GGG - Chr7:78851619-78851638 MsG0780040533.01.T01:intron 40.0%
GACTAAAGTGACTAATTCCC+CGG - Chr7:78851863-78851882 MsG0780040533.01.T01:intron 40.0%
GACTAACGAAGTTTGCATTC+AGG + Chr7:78851722-78851741 None:intergenic 40.0%
GAGAAGGGCTCAAATTCAAA+TGG - Chr7:78854188-78854207 MsG0780040533.01.T01:intron 40.0%
GCGACATATAAGGACTTAAC+CGG + Chr7:78851524-78851543 None:intergenic 40.0%
GCTTTCTTAACCAGTGTCTT+GGG - Chr7:78850685-78850704 MsG0780040533.01.T01:CDS 40.0%
GGAAAATCCTTCAGCTGTTA+AGG - Chr7:78853821-78853840 MsG0780040533.01.T01:intron 40.0%
GTACTTTACTACTTTGGTGG+TGG + Chr7:78851242-78851261 None:intergenic 40.0%
TCACAATCCTTAACAGCTGA+AGG + Chr7:78853831-78853850 None:intergenic 40.0%
TCAGGGACTAAAGTGACTAA+CGG + Chr7:78851877-78851858 None:intergenic 40.0%
TCCGTCTCATTCTTGATCAT+AGG + Chr7:78851464-78851483 None:intergenic 40.0%
TCGTTCCTAAATGTGTGACA+CGG + Chr7:78853716-78853735 None:intergenic 40.0%
TGAGGTAGTAACCTTGGAAT+TGG + Chr7:78853301-78853320 None:intergenic 40.0%
TGAGTGTGGGTATTCAAAGT+GGG - Chr7:78851576-78851595 MsG0780040533.01.T01:intron 40.0%
TGCTTTCTTAACCAGTGTCT+TGG - Chr7:78850684-78850703 MsG0780040533.01.T01:CDS 40.0%
TTGAGTGTGGGTATTCAAAG+TGG - Chr7:78851575-78851594 MsG0780040533.01.T01:intron 40.0%
TTGTCTCAATGCCTAGTGTA+AGG - Chr7:78852117-78852136 MsG0780040533.01.T01:intron 40.0%
TTTACTTACATCGGAGCTGT+GGG - Chr7:78852168-78852187 MsG0780040533.01.T01:intron 40.0%
! ACCCAAATACCTTTTCAACC+CGG + Chr7:78851885-78851904 None:intergenic 40.0%
! AGCTGTGGGTTGAGTATTTA+TGG - Chr7:78852182-78852201 MsG0780040533.01.T01:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG + Chr7:78851633-78851614 None:intergenic 40.0%
! CAAAGAAAAGTCTTGGTGTG+TGG - Chr7:78851327-78851346 MsG0780040533.01.T01:CDS 40.0%
! CTAGTGTAAGGTGTTTGCTT+TGG - Chr7:78852129-78852148 MsG0780040533.01.T01:intron 40.0%
! GGATTAAACTGACTCACAGA+AGG + Chr7:78853626-78853645 None:intergenic 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG + Chr7:78851632-78851613 None:intergenic 40.0%
! TCAAGAATGAGACGGATTCT+TGG - Chr7:78851468-78851487 MsG0780040533.01.T01:intron 40.0%
! TGTAAGGTGTTTGCTTTGGT+GGG - Chr7:78852133-78852152 MsG0780040533.01.T01:intron 40.0%
! TTTGCTATCGCTTAGTTGGA+TGG - Chr7:78850975-78850994 MsG0780040533.01.T01:intron 40.0%
! TTTTACTTACATCGGAGCTG+TGG - Chr7:78852167-78852186 MsG0780040533.01.T01:intron 40.0%
! TTTTCAACAAAGGGTCCCAA+CGG - Chr7:78852757-78852776 MsG0780040533.01.T01:intron 40.0%
! TTTTTATTAGTGAGACGGGG+AGG - Chr7:78851401-78851420 MsG0780040533.01.T01:intron 40.0%
!! CACTAGGCATTGAGACAAAA+AGG + Chr7:78852115-78852134 None:intergenic 40.0%
!! GCATTTTGCTATCGCTTAGT+TGG - Chr7:78850971-78850990 MsG0780040533.01.T01:CDS 40.0%
!! GGTTTTGCTCTGAATTGAAG+AGG - Chr7:78854123-78854142 MsG0780040533.01.T01:intron 40.0%
!! TGTGTTTAGTTGGTAGACCT+TGG - Chr7:78852020-78852039 MsG0780040533.01.T01:intron 40.0%
!!! GAAATCTGGTTTTGCACTCA+AGG - Chr7:78853141-78853160 MsG0780040533.01.T01:intron 40.0%
!!! GTGATGTTTGTTTTTTGGGG+TGG + Chr7:78850890-78850909 None:intergenic 40.0%
AAACGATTCTCTCTTGGACG+TGG + Chr7:78852684-78852703 None:intergenic 45.0%
AAGAGGCTAGCAACAAGGAA+GGG - Chr7:78854140-78854159 MsG0780040533.01.T01:intron 45.0%
AAGGTGAGGCTTTCTTCAAC+AGG - Chr7:78853160-78853179 MsG0780040533.01.T01:intron 45.0%
AGAGTAAGGGACGCAAAGAA+AGG - Chr7:78854234-78854253 MsG0780040533.01.T01:CDS 45.0%
AGCAGAGAGATCAACCCATT+TGG + Chr7:78853091-78853110 None:intergenic 45.0%
AGCTAAAGAAGCCGTTGTTG+AGG - Chr7:78853949-78853968 MsG0780040533.01.T01:intron 45.0%
AGTAACCTTGGAATTGGTCG+TGG + Chr7:78853295-78853314 None:intergenic 45.0%
ATCAACAAGAGGCTCATTGG+AGG + Chr7:78853115-78853134 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+TGG + Chr7:78851797-78851816 None:intergenic 45.0%
ATTGGTCGTGGTTGTAGTTG+TGG + Chr7:78853283-78853302 None:intergenic 45.0%
CCTCCTACTTCTTTGAGTGT+GGG - Chr7:78851563-78851582 MsG0780040533.01.T01:intron 45.0%
CCTTCCTTGACAACAAGCAA+GGG + Chr7:78854263-78854282 None:intergenic 45.0%
GACGAATCCCTTTCGATTCA+GGG + Chr7:78851629-78851648 None:intergenic 45.0%
GACTAACGGAGTCTACATTC+AGG + Chr7:78851754-78851773 None:intergenic 45.0%
GAGGTGGATAGATGATGTGT+GGG - Chr7:78851420-78851439 MsG0780040533.01.T01:intron 45.0%
GAGTAAGGGACGCAAAGAAA+GGG - Chr7:78854235-78854254 MsG0780040533.01.T01:CDS 45.0%
GCAGAGAGATCAACCCATTT+GGG + Chr7:78853090-78853109 None:intergenic 45.0%
GGGTTCTACTAAGAAAGGAG+GGG - Chr7:78854160-78854179 MsG0780040533.01.T01:intron 45.0%
GGTTCTACTAAGAAAGGAGG+GGG - Chr7:78854161-78854180 MsG0780040533.01.T01:intron 45.0%
GTTCTACTAAGAAAGGAGGG+GGG - Chr7:78854162-78854181 MsG0780040533.01.T01:intron 45.0%
TACAACCACGACCAATTCCA+AGG - Chr7:78853287-78853306 MsG0780040533.01.T01:intron 45.0%
TAGGGGGAATCTAGCTACAA+GGG - Chr7:78851968-78851987 MsG0780040533.01.T01:intron 45.0%
TCATGACAGGGATGCAAATG+AGG - Chr7:78850947-78850966 MsG0780040533.01.T01:CDS 45.0%
TCATGACTGCAACGCGATAT+GGG + Chr7:78850933-78850952 None:intergenic 45.0%
TCCCTGAAATTGACCATGCA+GGG - Chr7:78851781-78851800 MsG0780040533.01.T01:CDS 45.0%
TCCCTGCATGGTCAATTTCA+GGG + Chr7:78851785-78851804 None:intergenic 45.0%
TCCTCCTACTTCTTTGAGTG+TGG - Chr7:78851562-78851581 MsG0780040533.01.T01:intron 45.0%
TCTTGGAAGGCTTCCTAGTA+GGG - Chr7:78851950-78851969 MsG0780040533.01.T01:intron 45.0%
TGACGAATCCCTTTCGATTC+AGG + Chr7:78851630-78851649 None:intergenic 45.0%
TTCTTGGAAGGCTTCCTAGT+AGG - Chr7:78851949-78851968 MsG0780040533.01.T01:intron 45.0%
TTGGTCGTGGTTGTAGTTGT+GGG + Chr7:78853282-78853301 None:intergenic 45.0%
! ACTAATTCCCCGGGTTGAAA+AGG - Chr7:78851873-78851892 MsG0780040533.01.T01:intron 45.0%
! CCAAATACCTTTTCAACCCG+GGG + Chr7:78851883-78851902 None:intergenic 45.0%
! CCCAAATACCTTTTCAACCC+GGG + Chr7:78851884-78851903 None:intergenic 45.0%
! GGGTAGGTTTTGCATGTACA+AGG + Chr7:78850869-78850888 None:intergenic 45.0%
! GTGTAAGGTGTTTGCTTTGG+TGG - Chr7:78852132-78852151 MsG0780040533.01.T01:intron 45.0%
!! CAACGGCTTCTTTAGCTTGT+TGG + Chr7:78853946-78853965 None:intergenic 45.0%
!! CCCGGGTTGAAAAGGTATTT+GGG - Chr7:78851881-78851900 MsG0780040533.01.T01:intron 45.0%
!! CCTTGCTTGTTGTCAAGGAA+GGG - Chr7:78854261-78854280 MsG0780040533.01.T01:CDS 45.0%
!!! GTTTGTTTTTTGGGGTGGGT+AGG + Chr7:78850885-78850904 None:intergenic 45.0%
!!! ATTTTAAAATTTCTATTTTT+AGG + Chr7:78850597-78850616 None:intergenic 5.0%
AAAGGAGGGGGGAATGAGAA+GGG - Chr7:78854173-78854192 MsG0780040533.01.T01:intron 50.0%
AGGGGGAATCTAGCTACAAG+GGG - Chr7:78851969-78851988 MsG0780040533.01.T01:intron 50.0%
ATCGCGTTGCAGTCATGACA+GGG - Chr7:78850935-78850954 MsG0780040533.01.T01:CDS 50.0%
CCCACACTCAAAGAAGTAGG+AGG + Chr7:78851566-78851585 None:intergenic 50.0%
CCCTTCCTTGACAACAAGCA+AGG + Chr7:78854264-78854283 None:intergenic 50.0%
CGAGACCGTGTCACACATTT+AGG - Chr7:78853708-78853727 MsG0780040533.01.T01:intron 50.0%
CTTGGAAGGCTTCCTAGTAG+GGG - Chr7:78851951-78851970 MsG0780040533.01.T01:intron 50.0%
CTTTAGTCCCTGAATGGGAG+AGG + Chr7:78851851-78851870 None:intergenic 50.0%
GAAGAGGCTAGCAACAAGGA+AGG - Chr7:78854139-78854158 MsG0780040533.01.T01:intron 50.0%
GACGAATCCTCTCCCATTCA+GGG - Chr7:78851841-78851860 MsG0780040533.01.T01:intron 50.0%
GGAGGTGGATAGATGATGTG+TGG - Chr7:78851419-78851438 MsG0780040533.01.T01:intron 50.0%
GTAGCTAGATTCCCCCTACT+AGG + Chr7:78851966-78851985 None:intergenic 50.0%
GTAGGGGGAATCTAGCTACA+AGG - Chr7:78851967-78851986 MsG0780040533.01.T01:intron 50.0%
GTCATGACTGCAACGCGATA+TGG + Chr7:78850934-78850953 None:intergenic 50.0%
GTCCCTGAAATTGACCATGC+AGG - Chr7:78851780-78851799 MsG0780040533.01.T01:CDS 50.0%
GTCCCTGCATGGTCAATTTC+AGG + Chr7:78851786-78851805 None:intergenic 50.0%
TATCGCGTTGCAGTCATGAC+AGG - Chr7:78850934-78850953 MsG0780040533.01.T01:CDS 50.0%
TGACGAATCCTCTCCCATTC+AGG - Chr7:78851840-78851859 MsG0780040533.01.T01:intron 50.0%
TTATTAGTGAGACGGGGAGG+TGG - Chr7:78851404-78851423 MsG0780040533.01.T01:intron 50.0%
TTGGAAGGCTTCCTAGTAGG+GGG - Chr7:78851952-78851971 MsG0780040533.01.T01:intron 50.0%
! AAGTCTTGGTGTGTGGTGTG+TGG - Chr7:78851334-78851353 MsG0780040533.01.T01:CDS 50.0%
! AGTCTTGGTGTGTGGTGTGT+GGG - Chr7:78851335-78851354 MsG0780040533.01.T01:CDS 50.0%
!! AGCTACAAGGGGTGTTCTGT+CGG - Chr7:78851980-78851999 MsG0780040533.01.T01:intron 50.0%
!! CCCCGGGTTGAAAAGGTATT+TGG - Chr7:78851880-78851899 MsG0780040533.01.T01:intron 50.0%
!! CCCTTGCTTGTTGTCAAGGA+AGG - Chr7:78854260-78854279 MsG0780040533.01.T01:CDS 50.0%
!! GGTACCCTTGCTTGTTGTCA+AGG - Chr7:78854256-78854275 MsG0780040533.01.T01:CDS 50.0%
!!! CTGGTTTTGCACTCAAGGTG+AGG - Chr7:78853146-78853165 MsG0780040533.01.T01:intron 50.0%
AGAACTTCGACGCGCCCAAA+TGG - Chr7:78853073-78853092 MsG0780040533.01.T01:intron 55.0%
AGGTTCCTTAACCAGTGCCC+CGG + Chr7:78850577-78850596 None:intergenic 55.0%
GAAAGGAGGGGGGAATGAGA+AGG - Chr7:78854172-78854191 MsG0780040533.01.T01:intron 55.0%
GAACTTCGACGCGCCCAAAT+GGG - Chr7:78853074-78853093 MsG0780040533.01.T01:intron 55.0%
TTCTCTCTTGGACGTGGACC+AGG + Chr7:78852678-78852697 None:intergenic 55.0%
! AACCAGTGTCTTGGGAGCAC+CGG - Chr7:78850693-78850712 MsG0780040533.01.T01:CDS 55.0%
!! GCTACAAGGGGTGTTCTGTC+GGG - Chr7:78851981-78852000 MsG0780040533.01.T01:intron 55.0%
AACCGGTGCTCCCAAGACAC+TGG + Chr7:78850698-78850717 None:intergenic 60.0%
GGTTCCTTAACCAGTGCCCC+GGG + Chr7:78850576-78850595 None:intergenic 60.0%
GTCATGTTAACCGGTGCCCC+CGG - Chr7:78850555-78850574 MsG0780040533.01.T01:CDS 60.0%
GTTCCTTAACCAGTGCCCCG+GGG + Chr7:78850575-78850594 None:intergenic 60.0%
TCATGTTAACCGGTGCCCCC+GGG - Chr7:78850556-78850575 MsG0780040533.01.T01:CDS 60.0%
TGGTGTGTGGTGTGTGGGAG+TGG - Chr7:78851340-78851359 MsG0780040533.01.T01:CDS 60.0%
TGTGTGGTGTGTGGGAGTGG+AGG - Chr7:78851343-78851362 MsG0780040533.01.T01:CDS 60.0%
TTCCTTAACCAGTGCCCCGG+GGG + Chr7:78850574-78850593 None:intergenic 60.0%
CATGTTAACCGGTGCCCCCG+GGG - Chr7:78850557-78850576 MsG0780040533.01.T01:CDS 65.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - Chr7:78850569-78850588 MsG0780040533.01.T01:CDS 70.0%
! AACCAGTGCCCCGGGGGCAC+CGG + Chr7:78850568-78850587 None:intergenic 75.0%
! AACCGGTGCCCCCGGGGCAC+TGG - Chr7:78850563-78850582 MsG0780040533.01.T01:CDS 80.0%
Chromosome Type Strat End Strand Name
Chr7 gene 78850522 78854292 78850522 ID=MsG0780040533.01;Name=MsG0780040533.01
Chr7 mRNA 78850522 78854292 78850522 ID=MsG0780040533.01.T01;Parent=MsG0780040533.01;Name=MsG0780040533.01.T01;_AED=0.53;_eAED=0.53;_QI=0|0|0|0.75|1|1|4|0|249
Chr7 exon 78854230 78854292 78854230 ID=MsG0780040533.01.T01:exon:16170;Parent=MsG0780040533.01.T01
Chr7 exon 78851652 78851805 78851652 ID=MsG0780040533.01.T01:exon:16169;Parent=MsG0780040533.01.T01
Chr7 exon 78851325 78851385 78851325 ID=MsG0780040533.01.T01:exon:16168;Parent=MsG0780040533.01.T01
Chr7 exon 78850522 78850993 78850522 ID=MsG0780040533.01.T01:exon:16167;Parent=MsG0780040533.01.T01
Chr7 CDS 78854230 78854292 78854230 ID=MsG0780040533.01.T01:cds;Parent=MsG0780040533.01.T01
Chr7 CDS 78851652 78851805 78851652 ID=MsG0780040533.01.T01:cds;Parent=MsG0780040533.01.T01
Chr7 CDS 78851325 78851385 78851325 ID=MsG0780040533.01.T01:cds;Parent=MsG0780040533.01.T01
Chr7 CDS 78850522 78850993 78850522 ID=MsG0780040533.01.T01:cds;Parent=MsG0780040533.01.T01
Gene Sequence

>MsG0780040533.01.T01

ATGCACTTTGACAATGGAATCAATAATCTATGGGTCATGTTAACCGGTGCCCCCGGGGCACTGATGGAACCAGAAAACATTGATTGGGACAACATCGATTCCACCTTCATTCATGATGATACTTACGAGAACTTCGACGCGCCCAAATGGGTTGATCTCTCTGCTGCCTCCAATGAGCCTCTTGTTGATGATGATGAAATCTGGTTTTGCACTCAAGGCAAAGTTATTAAGATTGGCCAGCTTTCTGAAATTCTTCCATTTAAGGATAGAAATCGAAGGGAAAATCCTTCAGCTGTTAAGGATTGTGACAAGCCTAGAAGACCCAATTGTTCAAGAAACATGGATGAAGACAATGAGAATAAAAATCCAAACTTTACTGTAACAAATTTGGATGGTGGGACCAACAAGCTAAAGAAGCCGTTGTTGAGGTCAAAGTCAAACACTAAAAGAGACAACTTGAAAGAGTTGAATGATTCAAAAGAGTGTCCTCCTGAAAGAAGTAATAGAAGATCAAAACTGAAGAGTACATTTTCAGCTCAAAATTTATTGGGTGGCAGGGAAATTCTAAGTCAAATCACAGGGTTTTGCTCTGAATTGAAGAGGCTAGCAACAAGGAAGGGTTCTACTAAGAAAGGAGGGGGGAATGAGAAGGGCTCAAATTCAAATGGAGTGTTAGAAGAATTGAAGGAAAAGAGTAAGGGACGCAAAGAAAGGGTACCCTTGCTTGTTGTCAAGGAAGGGACACCTTGA

Protein sequence

>MsG0780040533.01.T01

MHFDNGINNLWVMLTGAPGALMEPENIDWDNIDSTFIHDDTYENFDAPKWVDLSAASNEPLVDDDEIWFCTQGKVIKIGQLSEILPFKDRNRRENPSAVKDCDKPRRPNCSRNMDEDNENKNPNFTVTNLDGGTNKLKKPLLRSKSNTKRDNLKELNDSKECPPERSNRRSKLKSTFSAQNLLGGREILSQITGFCSELKRLATRKGSTKKGGGNEKGSNSNGVLEELKEKSKGRKERVPLLVVKEGTP*