AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020938.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020938.01.T01 MTR_4g063705 79.195 149 24 1 40 188 94 235 8.03e-69 222
MsG0480020938.01.T01 MTR_4g063705 54.610 141 33 3 198 332 329 444 7.78e-34 129
MsG0480020938.01.T01 MTR_3g086250 56.954 151 50 2 42 188 109 248 6.83e-50 174
MsG0480020938.01.T02 MTR_4g063705 96.000 50 2 0 40 89 94 143 1.20e-25 99.4
MsG0480020938.01.T02 MTR_3g086250 59.259 54 22 0 42 95 109 162 1.60e-16 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020938.01.T01 AT2G28800 76.000 150 27 2 40 188 114 255 2.09e-66 213
MsG0480020938.01.T01 AT2G28800 76.000 150 27 2 40 188 114 255 2.56e-66 213
MsG0480020938.01.T01 AT2G28800 76.000 150 27 2 40 188 114 255 7.85e-66 214
MsG0480020938.01.T01 AT1G24490 64.238 151 39 2 42 188 100 239 2.57e-56 191
MsG0480020938.01.T01 AT2G28800 56.376 149 28 2 40 188 114 225 1.20e-38 142
MsG0480020938.01.T01 AT1G24490 58.095 105 29 2 88 188 109 202 2.90e-29 117
MsG0480020938.01.T02 AT2G28800 90.000 50 5 0 40 89 114 163 6.30e-24 93.6
MsG0480020938.01.T02 AT2G28800 90.000 50 5 0 40 89 114 163 6.47e-24 93.6
MsG0480020938.01.T02 AT2G28800 90.000 50 5 0 40 89 114 163 7.05e-24 94.4
MsG0480020938.01.T02 AT2G28800 90.000 50 5 0 40 89 114 163 8.81e-24 94.4
MsG0480020938.01.T02 AT1G24490 68.519 54 17 0 42 95 100 153 2.78e-18 79.0

Find 78 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACCTTTCACCATCCTTTC+GGG 0.236170 4:+50790943 None:intergenic
TGTTGTTACTCAGATATTAA+AGG 0.240430 4:-50794206 MsG0480020938.01.T01:intron
TCAACGGTGTGTAACACTTT+TGG 0.261901 4:-50789825 MsG0480020938.01.T01:three_prime_UTR
ATGGCAAATTGGTGATTTAC+AGG 0.263838 4:-50790870 MsG0480020938.01.T01:CDS
TTCAATCCCTCATATACTTA+TGG 0.272385 4:-50790889 MsG0480020938.01.T01:CDS
CTCATATACTTATGGCAAAT+TGG 0.279498 4:-50790881 MsG0480020938.01.T01:CDS
ACAAATAGGTTGCGCAAATT+AGG 0.308233 4:-50791042 MsG0480020938.01.T01:intron
TCGGCTTCTGTTTCCGATGA+TGG 0.311599 4:-50790770 MsG0480020938.01.T01:CDS
AGAAAGCAGGTGTCTGTTAA+AGG 0.315089 4:+50789934 None:intergenic
CTGACCTTTCACCATCCTTT+CGG 0.317761 4:+50790942 None:intergenic
TGTTAACAGAAGGTTTCTTA+TGG 0.318050 4:-50793300 MsG0480020938.01.T01:CDS
AAACCTTCAACCTAAAATTA+AGG 0.326230 4:-50793855 MsG0480020938.01.T01:CDS
ATAGCAAATCCATACGAATA+AGG 0.348748 4:+50794160 None:intergenic
TTTGAACCTCTTGGGGAACT+TGG 0.354687 4:+50790166 None:intergenic
TATTCATTGCCCTCATTTCA+AGG 0.361979 4:-50793703 MsG0480020938.01.T01:CDS
ATTGCTCACTCTTATTGTTA+AGG 0.371624 4:-50794134 MsG0480020938.01.T01:CDS
CAAATTACAGCAATTTCTAT+AGG 0.372450 4:-50794076 MsG0480020938.01.T01:intron
CAAGTGGATCCGGAATTTCT+TGG 0.379989 4:-50793238 MsG0480020938.01.T01:CDS
AACACCCCTCACCTGATTGC+CGG 0.401631 4:+50793815 None:intergenic
TTCTGTTTCCGATGATGGCT+CGG 0.429591 4:-50790765 MsG0480020938.01.T01:CDS
GCTACTATTCCCGTCTGGAT+TGG 0.430547 4:-50793455 MsG0480020938.01.T01:CDS
CAATTTGCCATAAGTATATG+AGG 0.434395 4:+50790882 None:intergenic
TATAGGTTGTTTACCGACTT+TGG 0.435935 4:-50793477 MsG0480020938.01.T01:intron
ACGAGGTTATCATAATTTCA+TGG 0.436848 4:+50794039 None:intergenic
ATGAAGTTCAACTCTGGCTT+CGG 0.438853 4:-50790789 MsG0480020938.01.T01:CDS
CTTGGATGCATACGCCTCTT+CGG 0.443255 4:+50790184 None:intergenic
TGCTGCTAGACAAGTGGATC+CGG 0.449644 4:-50793248 MsG0480020938.01.T01:CDS
AAGAAGATATGCCGGCAATC+AGG 0.452072 4:-50793826 MsG0480020938.01.T01:intron
AAATACAACTTGAGACTTCA+AGG 0.459373 4:-50793679 MsG0480020938.01.T01:CDS
TGCCAAAGGTTAACCCAGCT+TGG 0.468986 4:+50793648 None:intergenic
TTCTTATGGATCCCTTCTCT+CGG 0.470607 4:-50793286 MsG0480020938.01.T01:CDS
CTTTGGCTACTATTCCCGTC+TGG 0.472299 4:-50793460 MsG0480020938.01.T01:CDS
TCAAGGCTATATACCCAAGC+TGG 0.477437 4:-50793662 MsG0480020938.01.T01:CDS
TTTATCTAATGTGGCAAATG+AGG 0.481648 4:-50793420 MsG0480020938.01.T01:intron
AGATGCTGGTGGAATTATTA+CGG 0.488262 4:-50790995 MsG0480020938.01.T01:CDS
TGCCGGCATATCTTCTTGAA+TGG 0.488724 4:+50793832 None:intergenic
GTGGTCCGTTATCATACAAC+AGG 0.494705 4:+50790102 None:intergenic
TTGCCACATTAGATAAAGCT+TGG 0.497398 4:+50793426 None:intergenic
GCCAAAGGTTAACCCAGCTT+GGG 0.508042 4:+50793649 None:intergenic
AATTTACATTTGCTAACATG+TGG 0.530000 4:+50789959 None:intergenic
TAAGTATATGAGGGATTGAA+AGG 0.530956 4:+50790892 None:intergenic
GTGCATGTGCCTTATTCGTA+TGG 0.532237 4:-50794169 MsG0480020938.01.T01:CDS
GGCCATTCAAGAAGATATGC+CGG 0.538446 4:-50793834 MsG0480020938.01.T01:CDS
CCAGCATCTTCATTAACAGC+AGG 0.540975 4:+50791009 None:intergenic
GAAAGCCTGTTGTATGATAA+CGG 0.548195 4:-50790107 MsG0480020938.01.T01:exon
TTGAAGGGACTGTTAACAGA+AGG 0.553996 4:-50793310 MsG0480020938.01.T01:intron
ATACCAAGCTTTATCTAATG+TGG 0.557798 4:-50793429 MsG0480020938.01.T01:CDS
ACTAACTGTTGCTTTGTCAA+AGG 0.558712 4:+50794100 None:intergenic
CTAGTGGGACCACCGAGAGA+AGG 0.560903 4:+50793274 None:intergenic
CCGTGGATGAAGTTCAACTC+TGG 0.561677 4:-50790795 MsG0480020938.01.T01:CDS
AATAGGTTGCGCAAATTAGG+AGG 0.569780 4:-50791039 MsG0480020938.01.T01:intron
TAGTGGGACCACCGAGAGAA+GGG 0.572027 4:+50793275 None:intergenic
TAGCATTGCTGCTAGACAAG+TGG 0.577657 4:-50793254 MsG0480020938.01.T01:CDS
GTTTACGCAGTTAAAAGAAG+AGG 0.578308 4:-50790848 MsG0480020938.01.T01:CDS
GCTGGTGGAATTATTACGGC+AGG 0.578347 4:-50790991 MsG0480020938.01.T01:CDS
TATGAGGGATTGAAAGGCTG+AGG 0.579611 4:+50790898 None:intergenic
CCTGCTGTTAATGAAGATGC+TGG 0.581288 4:-50791009 MsG0480020938.01.T01:CDS
GTTACTCAGATATTAAAGGA+TGG 0.583255 4:-50794202 MsG0480020938.01.T01:intron
CAGAGTTGAACTTCATCCAC+GGG 0.583373 4:+50790796 None:intergenic
TTATGGATCCCTTCTCTCGG+TGG 0.585688 4:-50793283 MsG0480020938.01.T01:CDS
TGTCTAGCAGCAATGCTAGT+GGG 0.599990 4:+50793259 None:intergenic
CCAGAGTTGAACTTCATCCA+CGG 0.606136 4:+50790795 None:intergenic
AGTAAGTTTGTATATTACAA+CGG 0.608507 4:-50790059 MsG0480020938.01.T01:three_prime_UTR
TGGTATAGACCAATCCAGAC+GGG 0.615542 4:+50793446 None:intergenic
TTGTCTAGCAGCAATGCTAG+TGG 0.618690 4:+50793258 None:intergenic
AATTTGCCATAAGTATATGA+GGG 0.622193 4:+50790883 None:intergenic
GTTAAGCAAGGCACTGCCCG+TGG 0.622439 4:-50790812 MsG0480020938.01.T01:CDS
CAAGGCTATATACCCAAGCT+GGG 0.630142 4:-50793661 MsG0480020938.01.T01:intron
TAAACTACAAACAATGTGTG+TGG 0.633465 4:+50790083 None:intergenic
AAGCCCGAAAGGATGGTGAA+AGG 0.642072 4:-50790946 MsG0480020938.01.T01:CDS
GCTGTTAATGAAGATGCTGG+TGG 0.645878 4:-50791006 MsG0480020938.01.T01:CDS
TTGGTATAGACCAATCCAGA+CGG 0.649063 4:+50793445 None:intergenic
ATGCATCCAAGTTCCCCAAG+AGG 0.657697 4:-50790172 MsG0480020938.01.T01:CDS
CTTTGTCAAAGGAAGTGTAG+CGG 0.665172 4:+50794111 None:intergenic
ACGGGAATAGTAGCCAAAGT+CGG 0.680935 4:+50793464 None:intergenic
ATACGAATAAGGCACATGCA+CGG 0.688460 4:+50794171 None:intergenic
AGGACAAGAAGTTACCGAAG+AGG 0.694630 4:-50790198 MsG0480020938.01.T01:CDS
GAACAACGATAGTATGACAA+CGG 0.698036 4:-50789891 MsG0480020938.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAGTAAGTT+AGG + Chr4:50793520-50793539 None:intergenic 10.0%
!! AATATTTACTTAAGATAAAT+TGG + Chr4:50791388-50791407 None:intergenic 10.0%
!! ATTATTTATTTATATCAGTA+TGG - Chr4:50793193-50793212 MsG0480020938.01.T01:intron 10.0%
!! ATTCTATAAATAAATCAATT+TGG - Chr4:50793779-50793798 MsG0480020938.01.T01:intron 10.0%
!!! ATTCTTTATATGTTTTATTA+TGG - Chr4:50793735-50793754 MsG0480020938.01.T01:intron 10.0%
!!! TTATTTTCTTTATAGTTTTA+CGG - Chr4:50792970-50792989 MsG0480020938.01.T01:intron 10.0%
!!! TTCTTTATATGTTTTATTAT+GGG - Chr4:50793736-50793755 MsG0480020938.01.T01:intron 10.0%
!! AAAATTGAAACTATTGTATA+AGG - Chr4:50794582-50794601 MsG0480020938.01.T01:intron 15.0%
!! GAAACAATTTGTAAAAAAAA+AGG + Chr4:50792698-50792717 None:intergenic 15.0%
!! TAAAACATATAAAGAATGTA+TGG + Chr4:50793732-50793751 None:intergenic 15.0%
!! TATAAAGAAAATAATTGATG+TGG + Chr4:50792964-50792983 None:intergenic 15.0%
!! TTAAAATATAGGAACTTAAT+AGG + Chr4:50793687-50793706 None:intergenic 15.0%
!!! ATACAATAGTTTCAATTTTA+AGG + Chr4:50794581-50794600 None:intergenic 15.0%
!!! ATTGAAACTTTTAATTTGAA+GGG - Chr4:50791828-50791847 MsG0480020938.01.T01:intron 15.0%
!!! GAAATTTGTATTTTCTTATA+TGG + Chr4:50794678-50794697 None:intergenic 15.0%
!!! GATTTATTTCATATACTTTT+TGG + Chr4:50790323-50790342 None:intergenic 15.0%
!!! TACAATAGTTTCAATTTTAA+GGG + Chr4:50794580-50794599 None:intergenic 15.0%
!!! TATTGAAACTTTTAATTTGA+AGG - Chr4:50791827-50791846 MsG0480020938.01.T01:intron 15.0%
!!! TTTTCTCAAAAAGTAAAAAT+AGG + Chr4:50794849-50794868 None:intergenic 15.0%
!! AACAAAATCCTTATATAGTA+AGG + Chr4:50790472-50790491 None:intergenic 20.0%
!! ACATTAAAACAAACCATAAA+TGG - Chr4:50791142-50791161 MsG0480020938.01.T01:intron 20.0%
!! AGTAAGTTTGTATATTACAA+CGG - Chr4:50795094-50795113 MsG0480020938.01.T01:five_prime_UTR 20.0%
!! CATATGCATAACTTATAAAA+AGG + Chr4:50792228-50792247 None:intergenic 20.0%
!! CCAAAAAAAAAAAACCATAA+TGG - Chr4:50791174-50791193 MsG0480020938.01.T01:intron 20.0%
!! CCTTAATTACATTAAAATGA+CGG + Chr4:50794878-50794897 None:intergenic 20.0%
!! TAAAATAATAAGGAAAGAGA+AGG + Chr4:50793488-50793507 None:intergenic 20.0%
!! TATTTCACAAACTATATCAA+TGG - Chr4:50793650-50793669 MsG0480020938.01.T01:intron 20.0%
!! TCATGAAATTTGTATTATTG+AGG - Chr4:50790502-50790521 MsG0480020938.01.T01:intron 20.0%
!! TGGAAATGTATACATATAAA+TGG - Chr4:50790746-50790765 MsG0480020938.01.T01:intron 20.0%
!! TTATACAAGATTGAAATAGA+TGG + Chr4:50794630-50794649 None:intergenic 20.0%
!!! AAGTTTTCTTCTACATTTTT+TGG - Chr4:50793144-50793163 MsG0480020938.01.T01:intron 20.0%
!!! ACTTATTTCATAAGCTTTTA+TGG + Chr4:50792804-50792823 None:intergenic 20.0%
!!! ATTTGTTTTTATGTGATCTT+TGG - Chr4:50790391-50790410 MsG0480020938.01.T01:intron 20.0%
!!! CCATTATGGTTTTTTTTTTT+TGG + Chr4:50791177-50791196 None:intergenic 20.0%
!!! CTTGTGTTTTTTTTGTTATA+TGG - Chr4:50790726-50790745 MsG0480020938.01.T01:intron 20.0%
!!! GCAATTTTATCATTTTGTAT+AGG - Chr4:50791659-50791678 MsG0480020938.01.T01:intron 20.0%
!!! GTAAGTTTTGTATATTTCAA+CGG - Chr4:50795312-50795331 MsG0480020938.01.T01:five_prime_UTR 20.0%
! AAAATAAGCTGAAAACAGTT+TGG - Chr4:50790357-50790376 MsG0480020938.01.T01:intron 25.0%
! AAACATGACCTTACTATATA+AGG - Chr4:50790461-50790480 MsG0480020938.01.T01:intron 25.0%
! AAACCTTCAACCTAAAATTA+AGG - Chr4:50791298-50791317 MsG0480020938.01.T01:intron 25.0%
! AAATAAGCTGAAAACAGTTT+GGG - Chr4:50790358-50790377 MsG0480020938.01.T01:intron 25.0%
! AACAAGCAAAATGATTACTA+GGG + Chr4:50792928-50792947 None:intergenic 25.0%
! AACATCAATAGAATGAGTTA+AGG + Chr4:50790067-50790086 None:intergenic 25.0%
! AATTTGCCATAAGTATATGA+GGG + Chr4:50794273-50794292 None:intergenic 25.0%
! ACTGAAAGAAAAATCCATTA+TGG + Chr4:50791191-50791210 None:intergenic 25.0%
! ACTTTAGTATTTCTTCTCTT+TGG - Chr4:50793087-50793106 MsG0480020938.01.T01:intron 25.0%
! AGAGAGAAAGAAGTAATTAA+AGG - Chr4:50794488-50794507 MsG0480020938.01.T01:intron 25.0%
! AGTTGAGATGAAAATGATAA+AGG + Chr4:50791554-50791573 None:intergenic 25.0%
! ATAAAGAATGTATGGAGTTA+TGG + Chr4:50793724-50793743 None:intergenic 25.0%
! ATCATGTAAATAGCCATAAA+AGG - Chr4:50790846-50790865 MsG0480020938.01.T01:CDS 25.0%
! ATCATTTATCAAGATGTAGT+AGG - Chr4:50793259-50793278 MsG0480020938.01.T01:CDS 25.0%
! ATTGTATACAATTTGTGACT+AGG + Chr4:50794453-50794472 None:intergenic 25.0%
! CAAATTACAGCAATTTCTAT+AGG - Chr4:50791077-50791096 MsG0480020938.01.T01:intron 25.0%
! CAATCTTGTATAAGATGAAA+TGG - Chr4:50794637-50794656 MsG0480020938.01.T01:intron 25.0%
! CTGACTTTATTAATACATGT+AGG - Chr4:50791253-50791272 MsG0480020938.01.T01:intron 25.0%
! GTCTGCTTTGTAAAATAATA+AGG + Chr4:50793498-50793517 None:intergenic 25.0%
! TAAAAGAAAGTGAGAAAAGA+GGG + Chr4:50793117-50793136 None:intergenic 25.0%
! TAACAAGCAAAATGATTACT+AGG + Chr4:50792929-50792948 None:intergenic 25.0%
! TAAGAAAATACAAATTTCCC+AGG - Chr4:50794680-50794699 MsG0480020938.01.T01:intron 25.0%
! TACAAATTTCATGAATCTCA+AGG + Chr4:50790496-50790515 None:intergenic 25.0%
! TGTTGTTACTCAGATATTAA+AGG - Chr4:50790947-50790966 MsG0480020938.01.T01:CDS 25.0%
! TTATATAGTAAGGTCATGTT+TGG + Chr4:50790462-50790481 None:intergenic 25.0%
! TTCTATGCAATATGAAATCA+TGG + Chr4:50794556-50794575 None:intergenic 25.0%
! TTCTTTCTCATATGTTTCAA+TGG - Chr4:50793425-50793444 MsG0480020938.01.T01:CDS 25.0%
! TTTAAATGAGAACGATGTTA+AGG - Chr4:50790614-50790633 MsG0480020938.01.T01:intron 25.0%
!! AAAAGGTGTATTATAGGATA+CGG + Chr4:50793819-50793838 None:intergenic 25.0%
!! AAATGGTTTCTGAAAGAAAA+AGG + Chr4:50793836-50793855 None:intergenic 25.0%
!! AATTTACATTTGCTAACATG+TGG + Chr4:50795197-50795216 None:intergenic 25.0%
!! AGTAGTTAGGAATTTCATTT+TGG - Chr4:50792369-50792388 MsG0480020938.01.T01:intron 25.0%
!! GAAAGAAAAAGGTGTATTAT+AGG + Chr4:50793825-50793844 None:intergenic 25.0%
!! GTAGTTAGGAATTTCATTTT+GGG - Chr4:50792370-50792389 MsG0480020938.01.T01:intron 25.0%
!! TAGTTAGGAATTTCATTTTG+GGG - Chr4:50792371-50792390 MsG0480020938.01.T01:intron 25.0%
!! TTGTATTTTCCTTGAAATGA+GGG + Chr4:50791462-50791481 None:intergenic 25.0%
!! TTTCATAAGCTTTTATGGAT+AGG + Chr4:50792799-50792818 None:intergenic 25.0%
!! TTTTCTCACTTTCTTTTACA+GGG - Chr4:50793119-50793138 MsG0480020938.01.T01:intron 25.0%
!!! AAGAAGTAATTAAAGGTGTT+TGG - Chr4:50794495-50794514 MsG0480020938.01.T01:intron 25.0%
!!! AATCATTTTGCTTGTTACAA+TGG - Chr4:50792932-50792951 MsG0480020938.01.T01:intron 25.0%
!!! AGTTTTAATTGTAAGAAAGC+AGG + Chr4:50795235-50795254 None:intergenic 25.0%
!!! ATACAAATTGTTTCTACCAA+GGG - Chr4:50792505-50792524 MsG0480020938.01.T01:intron 25.0%
!!! ATGATAACTCTAAAGCAAAA+GGG + Chr4:50790831-50790850 None:intergenic 25.0%
!!! ATGGTTTTTTTTTTTTGGAC+TGG + Chr4:50791172-50791191 None:intergenic 25.0%
!!! CATTTTAATGTAATTAAGGC+TGG - Chr4:50794879-50794898 MsG0480020938.01.T01:intron 25.0%
!!! CCGTCATTTTAATGTAATTA+AGG - Chr4:50794875-50794894 MsG0480020938.01.T01:intron 25.0%
!!! TAGATTTTTTTCCTTTTGCT+AGG - Chr4:50794059-50794078 MsG0480020938.01.T01:intron 25.0%
!!! TATACAAATTGTTTCTACCA+AGG - Chr4:50792504-50792523 MsG0480020938.01.T01:intron 25.0%
!!! TCAGCTTATTTTCATAAGTT+CGG + Chr4:50790349-50790368 None:intergenic 25.0%
!!! TTGTTTTAATGTTTCAAACG+AGG + Chr4:50791134-50791153 None:intergenic 25.0%
AAATACAACTTGAGACTTCA+AGG - Chr4:50791474-50791493 MsG0480020938.01.T01:intron 30.0%
AACATTTGCCATATCATAAC+TGG - Chr4:50791620-50791639 MsG0480020938.01.T01:intron 30.0%
AATAGATGGTAGTTGGAATT+CGG + Chr4:50794616-50794635 None:intergenic 30.0%
ACAAGCAAAATGATTACTAG+GGG + Chr4:50792927-50792946 None:intergenic 30.0%
ACATTTGCCATATCATAACT+GGG - Chr4:50791621-50791640 MsG0480020938.01.T01:intron 30.0%
ACGAGGTTATCATAATTTCA+TGG + Chr4:50791117-50791136 None:intergenic 30.0%
ACTTAGATACTTCTTTCTGA+AGG - Chr4:50793914-50793933 MsG0480020938.01.T01:intron 30.0%
AGAAAAACTTTGAACCTCTT+GGG + Chr4:50794998-50795017 None:intergenic 30.0%
AGATTGAAATAGATGGTAGT+TGG + Chr4:50794623-50794642 None:intergenic 30.0%
AGTAAATGTAACTAGGAAGT+AGG - Chr4:50793036-50793055 MsG0480020938.01.T01:intron 30.0%
ATACTTGTGTTTCACACATT+AGG + Chr4:50793873-50793892 None:intergenic 30.0%
ATAGCAAATCCATACGAATA+AGG + Chr4:50790996-50791015 None:intergenic 30.0%
ATCCTGAAATTATATGTTGC+AGG - Chr4:50790642-50790661 MsG0480020938.01.T01:intron 30.0%
ATTGCTCACTCTTATTGTTA+AGG - Chr4:50791019-50791038 MsG0480020938.01.T01:CDS 30.0%
ATTTATCAAGATGTAGTAGG+CGG - Chr4:50793262-50793281 MsG0480020938.01.T01:CDS 30.0%
ATTTCAGTAAATACGAGACA+TGG - Chr4:50792272-50792291 MsG0480020938.01.T01:intron 30.0%
CAATTTGCCATAAGTATATG+AGG + Chr4:50794274-50794293 None:intergenic 30.0%
CTCATATACTTATGGCAAAT+TGG - Chr4:50794272-50794291 MsG0480020938.01.T01:intron 30.0%
GAAGAAGAAAAAGTTAAGCA+AGG - Chr4:50794329-50794348 MsG0480020938.01.T01:intron 30.0%
GAATGAGTTAAGGATTCAAT+TGG + Chr4:50790057-50790076 None:intergenic 30.0%
GCTTGCAAAAATATATGCAA+AGG - Chr4:50792200-50792219 MsG0480020938.01.T01:intron 30.0%
GTAAAAGAAAGTGAGAAAAG+AGG + Chr4:50793118-50793137 None:intergenic 30.0%
GTCTTGTAGTAAATGTAACT+AGG - Chr4:50793029-50793048 MsG0480020938.01.T01:intron 30.0%
GTTACTCAGATATTAAAGGA+TGG - Chr4:50790951-50790970 MsG0480020938.01.T01:CDS 30.0%
TAAACTACAAACAATGTGTG+TGG + Chr4:50795073-50795092 None:intergenic 30.0%
TAAAGTACGTTCAAAACCAA+CGG + Chr4:50790598-50790617 None:intergenic 30.0%
TAAGTATATGAGGGATTGAA+AGG + Chr4:50794264-50794283 None:intergenic 30.0%
TAGAAAAACTTTGAACCTCT+TGG + Chr4:50794999-50795018 None:intergenic 30.0%
TAGTAATGTAGCATTTGTGT+AGG - Chr4:50792173-50792192 MsG0480020938.01.T01:intron 30.0%
TCCTGAAATTATATGTTGCA+GGG - Chr4:50790643-50790662 MsG0480020938.01.T01:intron 30.0%
TCTAAGAAAAAACTCAACGA+CGG + Chr4:50790567-50790586 None:intergenic 30.0%
TCTTGATAAATGATTGCAGT+AGG + Chr4:50793253-50793272 None:intergenic 30.0%
TGAAAAAAGCCAAGAAATTC+CGG + Chr4:50791927-50791946 None:intergenic 30.0%
TGAGAAAGAATAAGAAGAAC+AGG + Chr4:50793415-50793434 None:intergenic 30.0%
TGTACCTTAAAATGATAGCA+TGG - Chr4:50791413-50791432 MsG0480020938.01.T01:intron 30.0%
TGTATAAAGTGGTTTAGCAT+GGG + Chr4:50794936-50794955 None:intergenic 30.0%
TGTTAACAGAAGGTTTCTTA+TGG - Chr4:50791853-50791872 MsG0480020938.01.T01:intron 30.0%
TTATTCGTAAACCTAGCAAA+AGG + Chr4:50794073-50794092 None:intergenic 30.0%
TTCAATCCCTCATATACTTA+TGG - Chr4:50794264-50794283 MsG0480020938.01.T01:intron 30.0%
TTGTAAAAAAAAAGGCAGCT+CGG + Chr4:50792690-50792709 None:intergenic 30.0%
TTTATCTAATGTGGCAAATG+AGG - Chr4:50791733-50791752 MsG0480020938.01.T01:intron 30.0%
! AAGAAGTGTATTCTTTGAGT+AGG + Chr4:50793555-50793574 None:intergenic 30.0%
! AAGAGGTTCAAAGTTTTTCT+AGG - Chr4:50794998-50795017 MsG0480020938.01.T01:CDS 30.0%
! ACAACCATGCTATCATTTTA+AGG + Chr4:50791420-50791439 None:intergenic 30.0%
! ACTGAAATCTAAGACTAACT+GGG + Chr4:50792260-50792279 None:intergenic 30.0%
! AGAGGTTCAAAGTTTTTCTA+GGG - Chr4:50794999-50795018 MsG0480020938.01.T01:CDS 30.0%
! ATACCAAGCTTTATCTAATG+TGG - Chr4:50791724-50791743 MsG0480020938.01.T01:intron 30.0%
! CAATCCTCCAATTTTATTAC+AGG + Chr4:50790901-50790920 None:intergenic 30.0%
! CTTTTCTCACTTTCTTTTAC+AGG - Chr4:50793118-50793137 MsG0480020938.01.T01:intron 30.0%
! GTAATGCTATTTGTTTCGAA+AGG - Chr4:50790773-50790792 MsG0480020938.01.T01:CDS 30.0%
! GTTGTATTTTCCTTGAAATG+AGG + Chr4:50791463-50791482 None:intergenic 30.0%
! TACTGAAATCTAAGACTAAC+TGG + Chr4:50792261-50792280 None:intergenic 30.0%
! TATTGAGCTTTTCTTTTGTC+TGG + Chr4:50794530-50794549 None:intergenic 30.0%
! TGCAGATTCTTTTAGTAGTT+AGG - Chr4:50792356-50792375 MsG0480020938.01.T01:intron 30.0%
!! AATTGTTTCTACCATCAAAG+AGG - Chr4:50792709-50792728 MsG0480020938.01.T01:intron 30.0%
!! AGGTAGTTGTTTTCCTTTTA+TGG + Chr4:50790862-50790881 None:intergenic 30.0%
!! CATGATAACTCTAAAGCAAA+AGG + Chr4:50790832-50790851 None:intergenic 30.0%
!! TCTTGAATGGCCTTAATTTT+AGG + Chr4:50791311-50791330 None:intergenic 30.0%
!!! CGAAGTATTTTTTTCGCATT+TGG - Chr4:50791976-50791995 MsG0480020938.01.T01:intron 30.0%
!!! TCTTCTACATTTTTTGGTTG+TGG - Chr4:50793150-50793169 MsG0480020938.01.T01:intron 30.0%
!!! TTCTTGGCTTTTTTCATTTG+TGG - Chr4:50791931-50791950 MsG0480020938.01.T01:intron 30.0%
AACTCTCATTTCCTCTTTGA+TGG + Chr4:50792723-50792742 None:intergenic 35.0%
AAGGATTCAATTGGTGGAAT+TGG + Chr4:50790048-50790067 None:intergenic 35.0%
AATACTTCGCTTATGAGCAA+AGG + Chr4:50791965-50791984 None:intergenic 35.0%
AATGCTCATTTAGTCCCTAT+TGG + Chr4:50792428-50792447 None:intergenic 35.0%
AATTTCCCAGGAAATTCAAG+AGG - Chr4:50794692-50794711 MsG0480020938.01.T01:intron 35.0%
ACAAATAGGTTGCGCAAATT+AGG - Chr4:50794111-50794130 MsG0480020938.01.T01:CDS 35.0%
ACTCATTCTATTGATGTTGC+CGG - Chr4:50790069-50790088 MsG0480020938.01.T01:three_prime_UTR 35.0%
ACTTCTTGTCCTGTATAAAG+TGG + Chr4:50794947-50794966 None:intergenic 35.0%
AGACATGGTTTATGCAACAT+GGG - Chr4:50792287-50792306 MsG0480020938.01.T01:intron 35.0%
AGATGCTGGTGGAATTATTA+CGG - Chr4:50794158-50794177 MsG0480020938.01.T01:CDS 35.0%
ATTGTTTCAAGAACCATGAC+TGG + Chr4:50792096-50792115 None:intergenic 35.0%
ATTTCATCTCCATCCTTCAT+CGG - Chr4:50789941-50789960 MsG0480020938.01.T01:three_prime_UTR 35.0%
CAAGTTTCTTTCCCTCATAT+CGG - Chr4:50793580-50793599 MsG0480020938.01.T01:intron 35.0%
CAGTAAATTGTTAGTCCTGA+TGG + Chr4:50793625-50793644 None:intergenic 35.0%
CATCAGGACTAACAATTTAC+TGG - Chr4:50793623-50793642 MsG0480020938.01.T01:intron 35.0%
CATGCTAAACCACTTTATAC+AGG - Chr4:50794935-50794954 MsG0480020938.01.T01:intron 35.0%
CCACGTTCCTGTAATAAAAT+TGG - Chr4:50790891-50790910 MsG0480020938.01.T01:CDS 35.0%
CGTTCCTGTAATAAAATTGG+AGG - Chr4:50790894-50790913 MsG0480020938.01.T01:CDS 35.0%
CTGTATAAAGTGGTTTAGCA+TGG + Chr4:50794937-50794956 None:intergenic 35.0%
CTTTGGTATATAGTCTGGTA+CGG + Chr4:50790009-50790028 None:intergenic 35.0%
GAAAAACTTTGAACCTCTTG+GGG + Chr4:50794997-50795016 None:intergenic 35.0%
GAAAGCCTGTTGTATGATAA+CGG - Chr4:50795046-50795065 MsG0480020938.01.T01:CDS 35.0%
GAACAACGATAGTATGACAA+CGG - Chr4:50795262-50795281 MsG0480020938.01.T01:five_prime_UTR 35.0%
GACATCAGACTATTTACTCT+TGG - Chr4:50792046-50792065 MsG0480020938.01.T01:intron 35.0%
GTGAACTTTGGTATATAGTC+TGG + Chr4:50790014-50790033 None:intergenic 35.0%
GTGGCAAATGAGGTAATTAA+TGG - Chr4:50791743-50791762 MsG0480020938.01.T01:intron 35.0%
GTTTACGCAGTTAAAAGAAG+AGG - Chr4:50794305-50794324 MsG0480020938.01.T01:intron 35.0%
TAAACATTTGAGCAAGTGCT+TGG + Chr4:50792868-50792887 None:intergenic 35.0%
TAAGACTAACTGGGACAATA+GGG + Chr4:50792251-50792270 None:intergenic 35.0%
TACCTTAAGAACAAACTCCA+TGG + Chr4:50790218-50790237 None:intergenic 35.0%
TAGGGACTAAATGAGCATTT+AGG - Chr4:50792429-50792448 MsG0480020938.01.T01:intron 35.0%
TATATAGTCTGGTACGGTTA+GGG + Chr4:50790003-50790022 None:intergenic 35.0%
TATCTAAGTTCTCGTGCATA+TGG + Chr4:50793903-50793922 None:intergenic 35.0%
TATTCATTGCCCTCATTTCA+AGG - Chr4:50791450-50791469 MsG0480020938.01.T01:intron 35.0%
TCCCTGCAACATATAATTTC+AGG + Chr4:50790647-50790666 None:intergenic 35.0%
TGAGTTAAGGATTCAATTGG+TGG + Chr4:50790054-50790073 None:intergenic 35.0%
TTCTTAGAAGATTGAACCGT+TGG - Chr4:50790579-50790598 MsG0480020938.01.T01:intron 35.0%
TTGCCACATTAGATAAAGCT+TGG + Chr4:50791730-50791749 None:intergenic 35.0%
! ACAACGGTCTGTAACATTTT+TGG - Chr4:50795110-50795129 MsG0480020938.01.T01:five_prime_UTR 35.0%
! ACGTCTGTTAATTGTTGTTC+AGG - Chr4:50793339-50793358 MsG0480020938.01.T01:intron 35.0%
! AGGTCAGTATTTTACGATAC+AGG - Chr4:50794227-50794246 MsG0480020938.01.T01:intron 35.0%
! ATGGCAAATTGGTGATTTAC+AGG - Chr4:50794283-50794302 MsG0480020938.01.T01:intron 35.0%
! CAACGGTCTGTAACATTTTT+GGG - Chr4:50795111-50795130 MsG0480020938.01.T01:five_prime_UTR 35.0%
! CCAATTTTATTACAGGAACG+TGG + Chr4:50790894-50790913 None:intergenic 35.0%
! CTCTTGGCAATCATTTTCTT+TGG - Chr4:50792062-50792081 MsG0480020938.01.T01:intron 35.0%
! CTGTTAATTGTTGTTCAGGA+TGG - Chr4:50793343-50793362 MsG0480020938.01.T01:intron 35.0%
! TTTATTGGTTGTGTTGTGGT+AGG - Chr4:50793002-50793021 MsG0480020938.01.T01:intron 35.0%
!! AACTCTAAAGCAAAAGGGTA+AGG + Chr4:50790826-50790845 None:intergenic 35.0%
!! ACTAACTGTTGCTTTGTCAA+AGG + Chr4:50791056-50791075 None:intergenic 35.0%
!! ACTCTAAAGCAAAAGGGTAA+GGG + Chr4:50790825-50790844 None:intergenic 35.0%
!! CTTTATAGTTTTACGGAGCT+CGG - Chr4:50792977-50792996 MsG0480020938.01.T01:intron 35.0%
!! CTTTTCTTTTGTCTGGAGTT+GGG + Chr4:50794523-50794542 None:intergenic 35.0%
!! TATAGGTTGTTTACCGACTT+TGG - Chr4:50791676-50791695 MsG0480020938.01.T01:intron 35.0%
!! TTAGGAATTTCATTTTGGGG+TGG - Chr4:50792374-50792393 MsG0480020938.01.T01:intron 35.0%
!!! GGAGGATTGCATTTTTTAAC+AGG - Chr4:50790912-50790931 MsG0480020938.01.T01:CDS 35.0%
!!! TAGGAATTTCATTTTGGGGT+GGG - Chr4:50792375-50792394 MsG0480020938.01.T01:intron 35.0%
!!! TGGCCTTAATTTTAGGTTGA+AGG + Chr4:50791304-50791323 None:intergenic 35.0%
!!! TGGGTTTTTTGGTAGAAGAA+TGG + Chr4:50794917-50794936 None:intergenic 35.0%
AAATATGCAGGTCCAGGAAT+GGG + Chr4:50792652-50792671 None:intergenic 40.0%
AACAGCCTCTGTGTAAAACA+CGG - Chr4:50792592-50792611 MsG0480020938.01.T01:intron 40.0%
AACTGGGCTGTACTTAAAGA+AGG - Chr4:50791637-50791656 MsG0480020938.01.T01:intron 40.0%
AAGAACAAACTCCATGGCAT+CGG + Chr4:50790212-50790231 None:intergenic 40.0%
AATAGGATGGTCAGATGGTT+AGG + Chr4:50794784-50794803 None:intergenic 40.0%
AATAGGTTGCGCAAATTAGG+AGG - Chr4:50794114-50794133 MsG0480020938.01.T01:CDS 40.0%
ACACACACACTACTAGATGT+GGG - Chr4:50793980-50793999 MsG0480020938.01.T01:intron 40.0%
ACCTCGCAAACAAATGCATT+CGG - Chr4:50789820-50789839 MsG0480020938.01.T01:three_prime_UTR 40.0%
ACTAAAGCTCCCAAATATGC+AGG + Chr4:50792664-50792683 None:intergenic 40.0%
AGAAAGCAGGTGTCTGTTAA+AGG + Chr4:50795222-50795241 None:intergenic 40.0%
AGACAGAATCAGGAAAGAAG+TGG + Chr4:50794735-50794754 None:intergenic 40.0%
AGCATGGGAAAATCAGGAAT+AGG + Chr4:50794801-50794820 None:intergenic 40.0%
AGGCAGTCATATCAAGGAAA+TGG + Chr4:50793853-50793872 None:intergenic 40.0%
AGTACAGCCCAGTTATGATA+TGG + Chr4:50791631-50791650 None:intergenic 40.0%
ATAAAGAAGTCCTTCAGCTC+TGG + Chr4:50790103-50790122 None:intergenic 40.0%
ATACGAATAAGGCACATGCA+CGG + Chr4:50790985-50791004 None:intergenic 40.0%
ATATAGTCTGGTACGGTTAG+GGG + Chr4:50790002-50790021 None:intergenic 40.0%
ATTCCTGGACCTGCATATTT+GGG - Chr4:50792652-50792671 MsG0480020938.01.T01:intron 40.0%
CACATTAGGCAGTCATATCA+AGG + Chr4:50793859-50793878 None:intergenic 40.0%
CTAAGACTAACTGGGACAAT+AGG + Chr4:50792252-50792271 None:intergenic 40.0%
CTTTCTTCAGCTTCTCGTTA+CGG + Chr4:50789876-50789895 None:intergenic 40.0%
GACAGAATCAGGAAAGAAGT+GGG + Chr4:50794734-50794753 None:intergenic 40.0%
GAGACATGGTTTATGCAACA+TGG - Chr4:50792286-50792305 MsG0480020938.01.T01:intron 40.0%
GATATAACTGTACCTGCCAA+AGG + Chr4:50791522-50791541 None:intergenic 40.0%
GATTCAATTGGTGGAATTGG+TGG + Chr4:50790045-50790064 None:intergenic 40.0%
GTATATAGTCTGGTACGGTT+AGG + Chr4:50790004-50790023 None:intergenic 40.0%
GTGGAAACTGAAGTGAACTT+TGG + Chr4:50790026-50790045 None:intergenic 40.0%
TAGGAACTTAATAGGCAGAG+AGG + Chr4:50793679-50793698 None:intergenic 40.0%
TCCACCAGTTTCAATGTACT+TGG - Chr4:50790799-50790818 MsG0480020938.01.T01:CDS 40.0%
TGGGAAAATCAGGAATAGGA+TGG + Chr4:50794797-50794816 None:intergenic 40.0%
TGTAACTAGGAAGTAGGAAC+TGG - Chr4:50793042-50793061 MsG0480020938.01.T01:intron 40.0%
TGTCACAGACTCACAAGTAT+AGG + Chr4:50792014-50792033 None:intergenic 40.0%
TTCTTATGGATCCCTTCTCT+CGG - Chr4:50791867-50791886 MsG0480020938.01.T01:intron 40.0%
TTGAAGGGACTGTTAACAGA+AGG - Chr4:50791843-50791862 MsG0480020938.01.T01:intron 40.0%
TTGGTATAGACCAATCCAGA+CGG + Chr4:50791711-50791730 None:intergenic 40.0%
! ATGAAGTTCAACTCTGGCTT+CGG - Chr4:50794364-50794383 MsG0480020938.01.T01:intron 40.0%
! ATTTTCTAAGCCCGAAAGGA+TGG - Chr4:50794200-50794219 MsG0480020938.01.T01:intron 40.0%
! CAACATCTTTTCCGTAGCAT+GGG + Chr4:50794816-50794835 None:intergenic 40.0%
! CAACGGTGTGTAACACTTTT+GGG - Chr4:50795329-50795348 MsG0480020938.01.T01:five_prime_UTR 40.0%
! CTTTGTCAAAGGAAGTGTAG+CGG + Chr4:50791045-50791064 None:intergenic 40.0%
! GATCATTTTCTAAGCCCGAA+AGG - Chr4:50794196-50794215 MsG0480020938.01.T01:CDS 40.0%
! GGTGTTTATTGGTTGTGTTG+TGG - Chr4:50792998-50793017 MsG0480020938.01.T01:intron 40.0%
! TCAACATCTTTTCCGTAGCA+TGG + Chr4:50794817-50794836 None:intergenic 40.0%
! TCAACGGTGTGTAACACTTT+TGG - Chr4:50795328-50795347 MsG0480020938.01.T01:five_prime_UTR 40.0%
! TGCCATGGAGTTTGTTCTTA+AGG - Chr4:50790213-50790232 MsG0480020938.01.T01:intron 40.0%
! TTCCTGATTTTCCCATGCTA+CGG - Chr4:50794802-50794821 MsG0480020938.01.T01:intron 40.0%
! TTTGGAGCTTATTCCAGTCA+TGG - Chr4:50792080-50792099 MsG0480020938.01.T01:intron 40.0%
! TTTTACATCCGAGCCATCAT+CGG + Chr4:50794399-50794418 None:intergenic 40.0%
!! GCTTTTCTTTTGTCTGGAGT+TGG + Chr4:50794524-50794543 None:intergenic 40.0%
!! TTGGACTGGCAATCCATTTA+TGG + Chr4:50791158-50791177 None:intergenic 40.0%
!!! AGGAATTTCATTTTGGGGTG+GGG - Chr4:50792376-50792395 MsG0480020938.01.T01:intron 40.0%
!!! GTGGTTTAGCATGGGTTTTT+TGG + Chr4:50794928-50794947 None:intergenic 40.0%
AAGAAGATATGCCGGCAATC+AGG - Chr4:50791327-50791346 MsG0480020938.01.T01:intron 45.0%
AAGTTGTTGCGGTGAAGTGA+AGG + Chr4:50789977-50789996 None:intergenic 45.0%
ACAACTTTACCATTGCGCCA+AGG + Chr4:50792535-50792554 None:intergenic 45.0%
ACAGCCTCTGTGTAAAACAC+GGG - Chr4:50792593-50792612 MsG0480020938.01.T01:intron 45.0%
ACGGGAATAGTAGCCAAAGT+CGG + Chr4:50791692-50791711 None:intergenic 45.0%
AGGACAAGAAGTTACCGAAG+AGG - Chr4:50794955-50794974 MsG0480020938.01.T01:CDS 45.0%
AGGGCCAAGTACATTGAAAC+TGG + Chr4:50790806-50790825 None:intergenic 45.0%
AGTGAGAAGTAGCCGATATG+AGG + Chr4:50793595-50793614 None:intergenic 45.0%
ATACCTGACATGCTTACCTG+AGG + Chr4:50793465-50793484 None:intergenic 45.0%
ATCCGTGGAAGTAACTGCAT+CGG + Chr4:50790151-50790170 None:intergenic 45.0%
CAAATATGCAGGTCCAGGAA+TGG + Chr4:50792653-50792672 None:intergenic 45.0%
CAAGGCTATATACCCAAGCT+GGG - Chr4:50791492-50791511 MsG0480020938.01.T01:intron 45.0%
CAAGTGGATCCGGAATTTCT+TGG - Chr4:50791915-50791934 MsG0480020938.01.T01:intron 45.0%
CACACACACACTACTAGATG+TGG - Chr4:50793979-50793998 MsG0480020938.01.T01:intron 45.0%
CACCACAGAATGTGCCAATA+GGG - Chr4:50792411-50792430 MsG0480020938.01.T01:intron 45.0%
CAGAGTTGAACTTCATCCAC+GGG + Chr4:50794360-50794379 None:intergenic 45.0%
CAGGAACGTGGAACATTTGT+AGG + Chr4:50790882-50790901 None:intergenic 45.0%
CATTCCTGGACCTGCATATT+TGG - Chr4:50792651-50792670 MsG0480020938.01.T01:intron 45.0%
CCAGAGTTGAACTTCATCCA+CGG + Chr4:50794361-50794380 None:intergenic 45.0%
CCAGCATCTTCATTAACAGC+AGG + Chr4:50794147-50794166 None:intergenic 45.0%
CCTGCTGTTAATGAAGATGC+TGG - Chr4:50794144-50794163 MsG0480020938.01.T01:CDS 45.0%
CGTTACGGAATAGAGATGAG+AGG + Chr4:50789861-50789880 None:intergenic 45.0%
CTGACCTTTCACCATCCTTT+CGG + Chr4:50794214-50794233 None:intergenic 45.0%
CTGAGCACAGCTCAACAAAT+AGG - Chr4:50794097-50794116 MsG0480020938.01.T01:intron 45.0%
GATGTTGCTGTGCAGAAGAA+CGG - Chr4:50790168-50790187 MsG0480020938.01.T01:CDS 45.0%
GCCAAGTACATTGAAACTGG+TGG + Chr4:50790803-50790822 None:intergenic 45.0%
GCTGTTAATGAAGATGCTGG+TGG - Chr4:50794147-50794166 MsG0480020938.01.T01:CDS 45.0%
GGAAATCATGAAACCACCTC+AGG - Chr4:50793446-50793465 MsG0480020938.01.T01:CDS 45.0%
GGCCATTCAAGAAGATATGC+CGG - Chr4:50791319-50791338 MsG0480020938.01.T01:intron 45.0%
GTAGGGTACACCAAAATGGT+GGG - Chr4:50792625-50792644 MsG0480020938.01.T01:intron 45.0%
GTGAGAAGTAGCCGATATGA+GGG + Chr4:50793594-50793613 None:intergenic 45.0%
GTGGTCCGTTATCATACAAC+AGG + Chr4:50795054-50795073 None:intergenic 45.0%
GTTGTTGTCACGTGACTGAA+AGG - Chr4:50792550-50792569 MsG0480020938.01.T01:intron 45.0%
TAGCATTGCTGCTAGACAAG+TGG - Chr4:50791899-50791918 MsG0480020938.01.T01:intron 45.0%
TATGAGGGATTGAAAGGCTG+AGG + Chr4:50794258-50794277 None:intergenic 45.0%
TCAAGGCTATATACCCAAGC+TGG - Chr4:50791491-50791510 MsG0480020938.01.T01:intron 45.0%
TCACCACAGAATGTGCCAAT+AGG - Chr4:50792410-50792429 MsG0480020938.01.T01:intron 45.0%
TCAGGAATAGGATGGTCAGA+TGG + Chr4:50794789-50794808 None:intergenic 45.0%
TCCGAATGCATTTGTTTGCG+AGG + Chr4:50789824-50789843 None:intergenic 45.0%
TCTAGTAGTGTGTGTGTGTG+TGG + Chr4:50793977-50793996 None:intergenic 45.0%
TGAAATCAGTGTCTTCGCCA+TGG + Chr4:50789927-50789946 None:intergenic 45.0%
TGACCTTTCACCATCCTTTC+GGG + Chr4:50794213-50794232 None:intergenic 45.0%
TGCCGGCATATCTTCTTGAA+TGG + Chr4:50791324-50791343 None:intergenic 45.0%
TGGTATAGACCAATCCAGAC+GGG + Chr4:50791710-50791729 None:intergenic 45.0%
TGTCTAGCAGCAATGCTAGT+GGG + Chr4:50791897-50791916 None:intergenic 45.0%
TTCCGTAGCATGGGAAAATC+AGG + Chr4:50794807-50794826 None:intergenic 45.0%
TTCTCACTATCTGTGCCATC+AGG - Chr4:50793607-50793626 MsG0480020938.01.T01:intron 45.0%
TTGTCTAGCAGCAATGCTAG+TGG + Chr4:50791898-50791917 None:intergenic 45.0%
TTTGAACCTCTTGGGGAACT+TGG + Chr4:50794990-50795009 None:intergenic 45.0%
! CTATTTGTTGAGCTGTGCTC+AGG + Chr4:50794099-50794118 None:intergenic 45.0%
! GTGCATGTGCCTTATTCGTA+TGG - Chr4:50790984-50791003 MsG0480020938.01.T01:CDS 45.0%
! TTCTGTTTCCGATGATGGCT+CGG - Chr4:50794388-50794407 MsG0480020938.01.T01:intron 45.0%
!! TTACGGAGCTCGGTGTTTAT+TGG - Chr4:50792987-50793006 MsG0480020938.01.T01:intron 45.0%
!!! GGAATTTCATTTTGGGGTGG+GGG - Chr4:50792377-50792396 MsG0480020938.01.T01:intron 45.0%
!!! TGGTTTTATCTCCGATGCCA+TGG - Chr4:50790198-50790217 MsG0480020938.01.T01:CDS 45.0%
!!! AAAATTTGAAATTAAAATAT+AGG + Chr4:50793698-50793717 None:intergenic 5.0%
AAGCCCGAAAGGATGGTGAA+AGG - Chr4:50794207-50794226 MsG0480020938.01.T01:intron 50.0%
AAGCTGAGAGAGAGGCTTCA+AGG + Chr4:50789899-50789918 None:intergenic 50.0%
AAGCTGGGTTAACCTTTGGC+AGG - Chr4:50791507-50791526 MsG0480020938.01.T01:intron 50.0%
ACCAGGCCTCTTGAATTTCC+TGG + Chr4:50794701-50794720 None:intergenic 50.0%
ACCCAAGCTGGGTTAACCTT+TGG - Chr4:50791503-50791522 MsG0480020938.01.T01:intron 50.0%
AGGAAGTGGAGTTCCGATGA+AGG + Chr4:50789957-50789976 None:intergenic 50.0%
AGGATGGTCAGATGGTTAGG+AGG + Chr4:50794781-50794800 None:intergenic 50.0%
AGTGGAGTTCCGATGAAGGA+TGG + Chr4:50789953-50789972 None:intergenic 50.0%
ATATGCCGGCAATCAGGTGA+GGG - Chr4:50791333-50791352 MsG0480020938.01.T01:intron 50.0%
ATGCATCCAAGTTCCCCAAG+AGG - Chr4:50794981-50795000 MsG0480020938.01.T01:CDS 50.0%
CAGCCTCTGTGTAAAACACG+GGG - Chr4:50792594-50792613 MsG0480020938.01.T01:intron 50.0%
CCAGGCCTCTTGAATTTCCT+GGG + Chr4:50794700-50794719 None:intergenic 50.0%
CCGTGGATGAAGTTCAACTC+TGG - Chr4:50794358-50794377 MsG0480020938.01.T01:intron 50.0%
CGTAGGGTACACCAAAATGG+TGG - Chr4:50792624-50792643 MsG0480020938.01.T01:intron 50.0%
CTCTCTCAGCTTCTCATCCA+TGG - Chr4:50789907-50789926 MsG0480020938.01.T01:three_prime_UTR 50.0%
CTGCGTAGGGTACACCAAAA+TGG - Chr4:50792621-50792640 MsG0480020938.01.T01:intron 50.0%
CTTGGATGCATACGCCTCTT+CGG + Chr4:50794972-50794991 None:intergenic 50.0%
CTTTGGCTACTATTCCCGTC+TGG - Chr4:50791693-50791712 MsG0480020938.01.T01:intron 50.0%
GAGGGAAGGGGAAACAAAGT+GGG + Chr4:50794762-50794781 None:intergenic 50.0%
GCCAAAGGTTAACCCAGCTT+GGG + Chr4:50791507-50791526 None:intergenic 50.0%
GCTACTATTCCCGTCTGGAT+TGG - Chr4:50791698-50791717 MsG0480020938.01.T01:intron 50.0%
GCTGGTGGAATTATTACGGC+AGG - Chr4:50794162-50794181 MsG0480020938.01.T01:CDS 50.0%
GGATGGTCAGATGGTTAGGA+GGG + Chr4:50794780-50794799 None:intergenic 50.0%
GGTTAGGGGAGAAGTTGTTG+CGG + Chr4:50789988-50790007 None:intergenic 50.0%
GTCAGATGGTTAGGAGGGAA+GGG + Chr4:50794775-50794794 None:intergenic 50.0%
GTCCCTATTGGCACATTCTG+TGG + Chr4:50792416-50792435 None:intergenic 50.0%
TCACGTGACTGAAAGGTCAC+AGG - Chr4:50792557-50792576 MsG0480020938.01.T01:intron 50.0%
TCAGATGGTTAGGAGGGAAG+GGG + Chr4:50794774-50794793 None:intergenic 50.0%
TCGGCTTCTGTTTCCGATGA+TGG - Chr4:50794383-50794402 MsG0480020938.01.T01:intron 50.0%
TGCCAAAGGTTAACCCAGCT+TGG + Chr4:50791508-50791527 None:intergenic 50.0%
TGCTGCTAGACAAGTGGATC+CGG - Chr4:50791905-50791924 MsG0480020938.01.T01:intron 50.0%
TGGATGAGAAGCTGAGAGAG+AGG + Chr4:50789907-50789926 None:intergenic 50.0%
TTATGGATCCCTTCTCTCGG+TGG - Chr4:50791870-50791889 MsG0480020938.01.T01:intron 50.0%
TTGCGGTGAAGTGAAGGAAG+TGG + Chr4:50789971-50789990 None:intergenic 50.0%
TTTCTACCAAGGGAGAGCCT+TGG - Chr4:50792515-50792534 MsG0480020938.01.T01:intron 50.0%
! AAAATGGTGGGACCCATTCC+TGG - Chr4:50792637-50792656 MsG0480020938.01.T01:intron 50.0%
! AGGAATGGGTCCCACCATTT+TGG + Chr4:50792638-50792657 None:intergenic 50.0%
! AGTAACTGCATCGGCGGTAA+CGG + Chr4:50790142-50790161 None:intergenic 50.0%
! CTTCCCCGTGTTTTACACAG+AGG + Chr4:50792600-50792619 None:intergenic 50.0%
! TGCAGAAGAACGGAGTTGGT+TGG - Chr4:50790178-50790197 MsG0480020938.01.T01:CDS 50.0%
!! AAGTGGGTTGAGACAGAACC+AGG + Chr4:50794718-50794737 None:intergenic 50.0%
!!! TTCATTTTGGGGTGGGGGTA+TGG - Chr4:50792382-50792401 MsG0480020938.01.T01:intron 50.0%
AAACACGGGGAAGACTGCGT+AGG - Chr4:50792607-50792626 MsG0480020938.01.T01:intron 55.0%
AACACCCCTCACCTGATTGC+CGG + Chr4:50791341-50791360 None:intergenic 55.0%
AACACGGGGAAGACTGCGTA+GGG - Chr4:50792608-50792627 MsG0480020938.01.T01:intron 55.0%
AGTGGGCGGAAGACAGAATC+AGG + Chr4:50794745-50794764 None:intergenic 55.0%
ATGGCCATCCACCTTTGGGT+TGG - Chr4:50793362-50793381 MsG0480020938.01.T01:intron 55.0%
CAGGATGGCCATCCACCTTT+GGG - Chr4:50793358-50793377 MsG0480020938.01.T01:intron 55.0%
CATGCCAACCCAAAGGTGGA+TGG + Chr4:50793369-50793388 None:intergenic 55.0%
CCACCTCAGGTAAGCATGTC+AGG - Chr4:50793459-50793478 MsG0480020938.01.T01:CDS 55.0%
CCCAGGAAATTCAAGAGGCC+TGG - Chr4:50794697-50794716 MsG0480020938.01.T01:intron 55.0%
CCTGACATGCTTACCTGAGG+TGG + Chr4:50793462-50793481 None:intergenic 55.0%
CGCCGATGCAGTTACTTCCA+CGG - Chr4:50790146-50790165 MsG0480020938.01.T01:CDS 55.0%
CGTGGAAGTAACTGCATCGG+CGG + Chr4:50790148-50790167 None:intergenic 55.0%
CTTCTGCACAGCAACATCCG+TGG + Chr4:50790166-50790185 None:intergenic 55.0%
GATATGCCGGCAATCAGGTG+AGG - Chr4:50791332-50791351 MsG0480020938.01.T01:intron 55.0%
GCAGTGTCATGCCAACCCAA+AGG + Chr4:50793376-50793395 None:intergenic 55.0%
GCTCCCAAATATGCAGGTCC+AGG + Chr4:50792658-50792677 None:intergenic 55.0%
GCTGTGCAGAAGAACGGAGT+TGG - Chr4:50790174-50790193 MsG0480020938.01.T01:CDS 55.0%
GGAAGGGGAAACAAAGTGGG+CGG + Chr4:50794759-50794778 None:intergenic 55.0%
GGAGGGAAGGGGAAACAAAG+TGG + Chr4:50794763-50794782 None:intergenic 55.0%
GGTCAGATGGTTAGGAGGGA+AGG + Chr4:50794776-50794795 None:intergenic 55.0%
GTGTCATGCCAACCCAAAGG+TGG + Chr4:50793373-50793392 None:intergenic 55.0%
TAGTGGGACCACCGAGAGAA+GGG + Chr4:50791881-50791900 None:intergenic 55.0%
TATGCCGGCAATCAGGTGAG+GGG - Chr4:50791334-50791353 MsG0480020938.01.T01:intron 55.0%
TCAGGATGGCCATCCACCTT+TGG - Chr4:50793357-50793376 MsG0480020938.01.T01:intron 55.0%
! TTCAGCTCTGGCGAAGACAC+CGG + Chr4:50790091-50790110 None:intergenic 55.0%
AAGGGAGAGCCTTGGCGCAA+TGG - Chr4:50792523-50792542 MsG0480020938.01.T01:intron 60.0%
ATTGCGCCAAGGCTCTCCCT+TGG + Chr4:50792524-50792543 None:intergenic 60.0%
CTAGTGGGACCACCGAGAGA+AGG + Chr4:50791882-50791901 None:intergenic 60.0%
GGTGTCTTCGCCAGAGCTGA+AGG - Chr4:50790090-50790109 MsG0480020938.01.T01:three_prime_UTR 60.0%
!! GTTAAGCAAGGCACTGCCCG+TGG - Chr4:50794341-50794360 MsG0480020938.01.T01:intron 60.0%
! ATCGGCGGTAACGGCAGCGT+CGG + Chr4:50790133-50790152 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 50789815 50795360 50789815 ID=MsG0480020938.01;Name=MsG0480020938.01
Chr4 mRNA 50789815 50795360 50789815 ID=MsG0480020938.01.T01;Parent=MsG0480020938.01;Name=MsG0480020938.01.T01;_AED=0.49;_eAED=0.54;_QI=267|0.42|0.75|1|0.71|0.62|8|298|332
Chr4 exon 50789815 50790218 50789815 ID=MsG0480020938.01.T01:exon:1056;Parent=MsG0480020938.01.T01
Chr4 exon 50790763 50791056 50790763 ID=MsG0480020938.01.T01:exon:1055;Parent=MsG0480020938.01.T01
Chr4 exon 50793223 50793326 50793223 ID=MsG0480020938.01.T01:exon:1054;Parent=MsG0480020938.01.T01
Chr4 exon 50793421 50793494 50793421 ID=MsG0480020938.01.T01:exon:1053;Parent=MsG0480020938.01.T01
Chr4 exon 50793662 50793744 50793662 ID=MsG0480020938.01.T01:exon:1052;Parent=MsG0480020938.01.T01
Chr4 exon 50793827 50793900 50793827 ID=MsG0480020938.01.T01:exon:1051;Parent=MsG0480020938.01.T01
Chr4 exon 50794105 50794215 50794105 ID=MsG0480020938.01.T01:exon:1050;Parent=MsG0480020938.01.T01
Chr4 five_prime_UTR 50795094 50795360 50795094 ID=MsG0480020938.01.T01:five_prime_utr;Parent=MsG0480020938.01.T01
Chr4 CDS 50794941 50795093 50794941 ID=MsG0480020938.01.T01:cds;Parent=MsG0480020938.01.T01
Chr4 CDS 50794105 50794215 50794105 ID=MsG0480020938.01.T01:cds;Parent=MsG0480020938.01.T01
Chr4 CDS 50793827 50793900 50793827 ID=MsG0480020938.01.T01:cds;Parent=MsG0480020938.01.T01
Chr4 CDS 50793662 50793744 50793662 ID=MsG0480020938.01.T01:cds;Parent=MsG0480020938.01.T01
Chr4 CDS 50793421 50793494 50793421 ID=MsG0480020938.01.T01:cds;Parent=MsG0480020938.01.T01
Chr4 CDS 50793223 50793326 50793223 ID=MsG0480020938.01.T01:cds;Parent=MsG0480020938.01.T01
Chr4 CDS 50790763 50791056 50790763 ID=MsG0480020938.01.T01:cds;Parent=MsG0480020938.01.T01
Chr4 CDS 50790113 50790218 50790113 ID=MsG0480020938.01.T01:cds;Parent=MsG0480020938.01.T01
Chr4 three_prime_UTR 50789815 50790112 50789815 ID=MsG0480020938.01.T01:three_prime_utr;Parent=MsG0480020938.01.T01
Chr4 mRNA 50794048 50795360 50794048 ID=MsG0480020938.01.T02;Parent=MsG0480020938.01;Name=MsG0480020938.01.T02;_AED=0.50;_eAED=0.53;_QI=267|1|0.5|1|1|1|2|0|106
Chr4 exon 50794048 50794215 50794048 ID=MsG0480020938.01.T02:exon:1057;Parent=MsG0480020938.01.T02
Chr4 five_prime_UTR 50795094 50795360 50795094 ID=MsG0480020938.01.T02:five_prime_utr;Parent=MsG0480020938.01.T02
Chr4 CDS 50794941 50795093 50794941 ID=MsG0480020938.01.T02:cds;Parent=MsG0480020938.01.T02
Chr4 CDS 50794048 50794215 50794048 ID=MsG0480020938.01.T02:cds;Parent=MsG0480020938.01.T02
Gene Sequence

>MsG0480020938.01.T01

ATGTTGCCGGTGTCTTCGCCAGAGCTGAAGGACTTCTTTATACGCTCGCCGACGCTGCCGTTACCGCCGATGCAGTTACTTCCACGGATGTTGCTGTGCAGAAGAACGGAGTTGGTTGGTTTTATCTCCGATGCCATGGAGTTTGTTCTTAAGATATTAAAGGATGGTTTGTCTGCCGTGCATGTGCCTTATTCGTATGGATTTGCTATCATATTGCTCACTCTTATTGTTAAGGCCGCTACACTTCCTTTGACAAAGCAACAGGTTGAATCAACACTAGCTATGCAAAACCTTCAACCTAAAATTAAGGCCATTCAAGAAGATATGCCGGCAATCAGCATGGTTGTTCTAACTACTTATTCATTGCCCTCATTTCAAGGAAAATACAACTTGAGACTTCAAGGCTATATACCCAAGCTGGGTTGTTTACCGACTTTGGCTACTATTCCCGTCTGGATTGGTCTATACCAAGCTTTATCTAATGTGGCAAATGAGGGACTGTTAACAGAAGGTTTCTTATGGATCCCTTCTCTCGGTGGTCCCACTAGCATTGCTGCTAGACAAGTGGATCCGGAATTTCTTGGCTTTTTTCATTTGTGGTTGCGCAAATTAGGAGGTGCAAAGCCTGCTGTTAATGAAGATGCTGGTGGAATTATTACGGCAGGACGAGCTAAGAGATCATTTTCTAAGCCCGAAAGGATGGTGAAAGGTCAGTATTTTACGATACAGGTTGCGCCTCAGCCTTTCAATCCCTCATATACTTATGGCAAATTGGTGATTTACAGGTTTACGCAGTTAAAAGAAGAGGAGAAGAAGAAAAAGTTAAGCAAGGCACTGCCCGTGGATGAAGTTCAACTCTGGCTTCGGCTTCTGTTTCCGATGATGGCTCGGATGACAAGAAGTTACCGAAGAGGCGTATGCATCCAAGTTCCCCAAGAGGTTCAAAGTTTTTCTAGGGAAAGAAGAAGCAAGCGTTCAAAGCGAAAGCCTGTTGTATGA

>MsG0480020938.01.T02

ATGTTGCCGGTGTCTTCGCCAGAGCTGAAGGACTTCTTTATACGCTCGCCGACGCTGCCGTTACCGCCGATGCAGTTACTTCCACGGATGTTGCTGTGCAGAAGAACGGAGTTGGTTGGTTTTATCTCCGATGCCATGGAGTTTGTTCTTAAGATATTAAAGGATGGTTTGTCTGCCGTGCATGTGCCTTATTCGTATGGATTTGCTATCATATTGCTCACTCTTATTGTTAAGGCCGCTACACTTCCTTTGACAAAGCAACAGTTAGTACAAATTACAGCAATTTCTATAGGCAAATTTACTGAAACCATGAAATTATGA

Protein sequence

>MsG0480020938.01.T01

MLPVSSPELKDFFIRSPTLPLPPMQLLPRMLLCRRTELVGFISDAMEFVLKILKDGLSAVHVPYSYGFAIILLTLIVKAATLPLTKQQVESTLAMQNLQPKIKAIQEDMPAISMVVLTTYSLPSFQGKYNLRLQGYIPKLGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGGPTSIAARQVDPEFLGFFHLWLRKLGGAKPAVNEDAGGIITAGRAKRSFSKPERMVKGQYFTIQVAPQPFNPSYTYGKLVIYRFTQLKEEEKKKKLSKALPVDEVQLWLRLLFPMMARMTRSYRRGVCIQVPQEVQSFSRERRSKRSKRKPVV*

>MsG0480020938.01.T02

MLPVSSPELKDFFIRSPTLPLPPMQLLPRMLLCRRTELVGFISDAMEFVLKILKDGLSAVHVPYSYGFAIILLTLIVKAATLPLTKQQLVQITAISIGKFTETMKL*