AlfalfaGEDB | MsG0480021405.01

M. sativa cultivar ZhongmuNo.1 / MsG0480021405.01

KEGG: K14018
GO: GO:0005515
PFAM: PF00400

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021405.01.T01	XP_039689072.1	66.529	242	41	5	5	218	66	295	1.42E-91	295

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021405.01.T01	Q6GM65	30.481	187	95	4	77	234	144	324	1.02E-14	76.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021405.01.T01	A0A396I8G4	66.529	242	41	5	5	218	66	295	1.68e-91	295

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280006510.01	MsG0480021405.01	0.800760	1.238858e-48	5.815617e-46
MsG0480021401.01	MsG0480021405.01	0.938031	1.315132e-98	1.235235e-93
MsG0480021403.01	MsG0480021405.01	0.933235	2.557538e-95	1.797276e-90
MsG0480021405.01	MsG0480021499.01	0.938497	6.099368e-99	5.914303e-94
MsG0480021405.01	MsG0480021775.01	0.812714	3.688807e-51	2.362535e-48
MsG0480021405.01	MsG0880043450.01	0.812485	4.141403e-51	2.636535e-48
MsG0480021405.01	MsG0880044748.01	0.952263	3.526910e-110	8.502449e-105
MsG0480021405.01	MsG0880046772.01	0.802709	4.932305e-49	2.432882e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021405.01.T01	MTR_4g069090	58.427	267	64	7	5	242	72	320	2.88e-87	274
MsG0480021405.01.T01	MTR_4g119620	30.097	206	115	13	16	207	136	326	2.71e-11	62.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480021405.01.T01	AT3G18860	46.816	267	95	7	5	242	75	323	2.01e-64	214
MsG0480021405.01.T01	AT3G18860	46.816	267	95	7	5	242	75	323	2.05e-64	214
MsG0480021405.01.T01	AT3G49660	29.442	197	116	12	16	202	129	312	4.01e-12	65.5

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Find 60 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCTACTTTGAAAAGCGG+TGG	0.631203	4:-57522425	MsG0480021405.01.T01:CDS
AATTACTGCACAAGAAATTC+AGG	0.352685	4:+57521763	None:intergenic
ACCTGTAACAAGCTCTCCTG+TGG	0.546432	4:+57521653	None:intergenic
ACTACAGTTCTCTCAGATTA+TGG	0.178467	4:-57520950	MsG0480021405.01.T01:intron
AGAAATGAACCCACCATCAT+GGG	0.549914	4:+57521056	None:intergenic
AGAGTCCCTTGAACCTAAAA+TGG	0.203614	4:+57521485	None:intergenic
AGCACCGTCCGATGTATATC+AGG	0.373422	4:-57522457	None:intergenic
AGCTTTATAACTGCTTGAAT+TGG	0.341084	4:+57521678	None:intergenic
ATCCTATCTGCATCCCATGA+TGG	0.605689	4:-57521069	MsG0480021405.01.T01:CDS
ATCGGAGGTTACTGGTATTG+TGG	0.622916	4:-57522324	MsG0480021405.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAAGTCAATGCACAAAAA+AGG	-	Chr4:57522430-57522449	MsG0480021405.01.T01:CDS	30.0%
AAGATCGTTTGGCAAAAATA+TGG	-	Chr4:57521003-57521022	MsG0480021405.01.T01:intron	30.0%
AAGCTTCAAAATCATCTCAA+TGG	-	Chr4:57521725-57521744	MsG0480021405.01.T01:CDS	30.0%
AATTACTGCACAAGAAATTC+AGG	+	Chr4:57520073-57520092	None:intergenic	30.0%
ATAGCAATAATGTTTCCTTG+TGG	-	Chr4:57520572-57520591	MsG0480021405.01.T01:intron	30.0%
ATATGTGAATTGCATACGTA+AGG	-	Chr4:57521878-57521897	MsG0480021405.01.T01:intron	30.0%
ATGATACACTTCTGAATGTT+AGG	-	Chr4:57519994-57520013	MsG0480021405.01.T01:intron	30.0%
ATTAATTCTTAAGCTCCCTA+AGG	+	Chr4:57521130-57521149	None:intergenic	30.0%
ATTGTAATCTGCAGAACTAA+TGG	-	Chr4:57521804-57521823	MsG0480021405.01.T01:intron	30.0%
CAATGCACAAAAAAGGAAAT+TGG	-	Chr4:57522437-57522456	MsG0480021405.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	57519387	57522468	57519387	ID=MsG0480021405.01;Name=MsG0480021405.01
Chr4	mRNA	57519387	57522468	57519387	ID=MsG0480021405.01.T01;Parent=MsG0480021405.01;Name=MsG0480021405.01.T01;_AED=0.13;_eAED=0.14;_QI=0\|0.4\|0.33\|1\|1\|1\|6\|0\|247
Chr4	exon	57519387	57519520	57519387	ID=MsG0480021405.01.T01:exon:17204;Parent=MsG0480021405.01.T01
Chr4	exon	57520826	57520965	57520826	ID=MsG0480021405.01.T01:exon:17203;Parent=MsG0480021405.01.T01
Chr4	exon	57521066	57521129	57521066	ID=MsG0480021405.01.T01:exon:17202;Parent=MsG0480021405.01.T01
Chr4	exon	57521430	57521516	57521430	ID=MsG0480021405.01.T01:exon:17201;Parent=MsG0480021405.01.T01
Chr4	exon	57521655	57521787	57521655	ID=MsG0480021405.01.T01:exon:17200;Parent=MsG0480021405.01.T01
Chr4	exon	57522283	57522468	57522283	ID=MsG0480021405.01.T01:exon:17199;Parent=MsG0480021405.01.T01
Chr4	CDS	57522283	57522468	57522283	ID=MsG0480021405.01.T01:cds;Parent=MsG0480021405.01.T01
Chr4	CDS	57521655	57521787	57521655	ID=MsG0480021405.01.T01:cds;Parent=MsG0480021405.01.T01
Chr4	CDS	57521430	57521516	57521430	ID=MsG0480021405.01.T01:cds;Parent=MsG0480021405.01.T01
Chr4	CDS	57521066	57521129	57521066	ID=MsG0480021405.01.T01:cds;Parent=MsG0480021405.01.T01
Chr4	CDS	57520826	57520965	57520826	ID=MsG0480021405.01.T01:cds;Parent=MsG0480021405.01.T01
Chr4	CDS	57519387	57519520	57519387	ID=MsG0480021405.01.T01:cds;Parent=MsG0480021405.01.T01

Gene Sequence

>MsG0480021405.01.T01

ATGTATATCAGGATTCCACCGAACCCTACTTTGAAAAGCGGTGGTGTTTCTGGTTGTGTGAATAATGCTGTGGTTGTTTGGGACGTGGATAGTGGTAAGATTGTGAAGACACTAGATCATGAATCGGAGGTTACTGGTATTGTGGTTGATGGAGATGATCTTGTTCATCTTCTATTGATGGGTAGGTGCCTGAATTTCTTGTGCAGTAATTTGAAGAGGTGGAGTAATTGGAATTGTTCGAATTGCACGGAGACATGGGCGGCTCACGAGGGTCCAATTCAAGCAGTTATAAAGCTACCCACAGGAGAGCTTGTTACAGGTTCAAGTCCCATTTTAGGTTCAAGGGACTCTAGTTTAAAGATCTGGAAGGGCAAAGTTTGTTTACATACTTTTCATGGACATGCAGATACTGTTTGTGGCTTGGCTGCGATGTCTGATTTTGGAATCCTATCTGCATCCCATGATGGTGGTTCTCTCAGATTATGGGCATTAAATGGTCATCAGATAATGAACATGTCTGGCCATACTGCAACTGTTTGTTCAGTTGATTCACATGCATCAGGACTTATTGTCAGTGGTAGCGAAGATCGTTTGGCAAAAATATGGAAAGCATGTTCCGATGGAGTTGTACGCATTTGGACTGTAAATCAGAATCATTTTGCTGGCCAGCGAGAACTTGATTTATACACTTCGCAACTTTCTATTAACAAGTCAATGCACAAAAAAGGAAATTGGATAACGTAA

Protein sequence

>MsG0480021405.01.T01

MYIRIPPNPTLKSGGVSGCVNNAVVVWDVDSGKIVKTLDHESEVTGIVVDGDDLVHLLLMGRCLNFLCSNLKRWSNWNCSNCTETWAAHEGPIQAVIKLPTGELVTGSSPILGSRDSSLKIWKGKVCLHTFHGHADTVCGLAAMSDFGILSASHDGGSLRLWALNGHQIMNMSGHTATVCSVDSHASGLIVSGSEDRLAKIWKACSDGVVRIWTVNQNHFAGQRELDLYTSQLSINKSMHKKGNWIT*