Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021775.01.T01 | XP_021840247.1 | 51.145 | 262 | 99 | 4 | 1 | 243 | 16 | 267 | 3.62E-67 | 219 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021775.01.T01 | A0A6D2I977 | 44.118 | 306 | 81 | 9 | 1 | 243 | 54 | 332 | 2.09e-65 | 216 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180005629.01 | MsG0480021775.01 | 0.804370 | 2.231363e-49 | 1.148516e-46 |
MsG0380014122.01 | MsG0480021775.01 | 0.898988 | 3.089632e-77 | 3.743125e-73 |
MsG0480020471.01 | MsG0480021775.01 | 0.807384 | 5.188485e-50 | 2.885903e-47 |
MsG0480021405.01 | MsG0480021775.01 | 0.812714 | 3.688807e-51 | 2.362535e-48 |
MsG0480021499.01 | MsG0480021775.01 | 0.820068 | 8.335870e-53 | 6.529117e-50 |
MsG0480021775.01 | MsG0480022862.01 | 0.890488 | 9.414251e-74 | 7.930100e-70 |
MsG0480021775.01 | MsG0480023011.01 | 0.803492 | 3.397749e-49 | 1.709835e-46 |
MsG0480021775.01 | MsG0580024918.01 | 0.900264 | 8.720491e-78 | 1.118909e-73 |
MsG0480021775.01 | MsG0580027617.01 | 0.892880 | 1.055294e-74 | 9.824142e-71 |
MsG0480021775.01 | MsG0580029101.01 | 0.885985 | 5.068229e-72 | 3.553403e-68 |
MsG0480021775.01 | MsG0780036201.01 | 0.828447 | 8.943605e-55 | 8.892428e-52 |
MsG0480021775.01 | MsG0780038597.01 | 0.894732 | 1.869422e-75 | 1.882039e-71 |
MsG0480021775.01 | MsG0780038654.01 | 0.802454 | 5.567906e-49 | 2.728561e-46 |
MsG0480021775.01 | MsG0780039503.01 | 0.850087 | 2.129825e-60 | 4.124499e-57 |
MsG0480021775.01 | MsG0780039544.01 | 0.859083 | 5.286373e-63 | 1.379025e-59 |
MsG0480021775.01 | MsG0780039592.01 | 0.849180 | 3.816297e-60 | 7.175955e-57 |
MsG0480021775.01 | MsG0780040186.01 | 0.848827 | 4.782570e-60 | 8.888398e-57 |
MsG0480021775.01 | MsG0880044748.01 | 0.817453 | 3.271546e-52 | 2.383623e-49 |
MsG0280006510.01 | MsG0480021775.01 | 0.832807 | 7.658583e-56 | 8.654331e-53 |
MsG0280010102.01 | MsG0480021775.01 | 0.858548 | 7.639117e-63 | 1.956820e-59 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0480021775.01.T01 | MTR_7g062720 | 61.728 | 81 | 31 | 0 | 1 | 81 | 54 | 134 | 2.21e-29 | 109 |
MsG0480021775.01.T01 | MTR_5g061150 | 64.557 | 79 | 28 | 0 | 1 | 79 | 44 | 122 | 7.82e-29 | 107 |
MsG0480021775.01.T01 | MTR_1g036690 | 62.295 | 61 | 17 | 2 | 183 | 243 | 5 | 59 | 5.42e-18 | 76.6 |
MsG0480021775.01.T01 | MTR_4g037355 | 41.791 | 134 | 51 | 6 | 61 | 190 | 6 | 116 | 2.87e-17 | 76.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 57 sgRNAs with CRISPR-Local
Find 74 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTTCAAAATAAGGATAAA+AGG | 0.234592 | 4:-64156731 | MsG0480021775.01.T01:CDS |
CCAACAATCACTTCAAAATA+AGG | 0.244294 | 4:-64156739 | MsG0480021775.01.T01:CDS |
ATGGTTATATTTGCGTTTAC+AGG | 0.259438 | 4:-64157348 | MsG0480021775.01.T01:CDS |
AAATTGTCCCAAAGATCTTT+TGG | 0.264548 | 4:+64157425 | None:intergenic |
TAGAAGATCCAAAAGATCTT+TGG | 0.283634 | 4:-64157433 | MsG0480021775.01.T01:CDS |
TGTGTTGCTACATTCACTTC+TGG | 0.294995 | 4:+64157059 | None:intergenic |
TATAGGTGGGGTTCTATTCC+TGG | 0.331534 | 4:+64156580 | None:intergenic |
TAAAGATCAACAAGATGTTT+TGG | 0.333763 | 4:+64156762 | None:intergenic |
TGAAGATGATTATGGTAATA+TGG | 0.338642 | 4:-64156679 | MsG0480021775.01.T01:CDS |
AACCATTCATTACGAGCATT+AGG | 0.386252 | 4:+64157365 | None:intergenic |
GAAAATGATGAAGATGATTA+TGG | 0.391347 | 4:-64156687 | MsG0480021775.01.T01:CDS |
AGAAGATCCAAAAGATCTTT+GGG | 0.400056 | 4:-64157432 | MsG0480021775.01.T01:CDS |
GTATGGAAGGGGACGTGGTT+TGG | 0.405914 | 4:-64156966 | MsG0480021775.01.T01:CDS |
TGCTATCGTTGTGGAGGAAA+AGG | 0.414829 | 4:-64156810 | MsG0480021775.01.T01:CDS |
CTTTGGGACAATTTAAAGAA+AGG | 0.419598 | 4:-64157416 | MsG0480021775.01.T01:CDS |
GTGTTGCTACATTCACTTCT+GGG | 0.423307 | 4:+64157060 | None:intergenic |
CCTTCGTCACCACCTTCATA+AGG | 0.433246 | 4:-64157480 | MsG0480021775.01.T01:CDS |
GACGTGGACGTGGCGTGGTA+TGG | 0.435978 | 4:-64156983 | MsG0480021775.01.T01:CDS |
ATTAACACTGTGTGGAGAAA+AGG | 0.440407 | 4:-64157273 | MsG0480021775.01.T01:intron |
CAAAATCGTGGTCGTGGCCG+TGG | 0.442209 | 4:-64157023 | MsG0480021775.01.T01:CDS |
CGTGGTCGTGGCCGTGGTCA+TGG | 0.454221 | 4:-64157017 | MsG0480021775.01.T01:CDS |
TTTGGGACAATTTAAAGAAA+GGG | 0.461394 | 4:-64157415 | MsG0480021775.01.T01:CDS |
AATGTTGTAAAGAATGATAT+TGG | 0.471241 | 4:-64156861 | MsG0480021775.01.T01:CDS |
GCGTGGTATGGAAGGGGACG+TGG | 0.474989 | 4:-64156971 | MsG0480021775.01.T01:CDS |
AAGAATCAGCAGCATCTAAG+TGG | 0.476282 | 4:+64156649 | None:intergenic |
GCTACATTCACTTCTGGGAA+TGG | 0.483138 | 4:+64157065 | None:intergenic |
TGAGATGATCAATCTTCATC+AGG | 0.485258 | 4:+64156619 | None:intergenic |
ACTTCAAAATAAGGATAAAA+GGG | 0.487291 | 4:-64156730 | MsG0480021775.01.T01:CDS |
GGACAATTTAAAGAAAGGGT+TGG | 0.493431 | 4:-64157411 | MsG0480021775.01.T01:CDS |
TGGACGTGGCGTGGTATGGA+AGG | 0.493864 | 4:-64156979 | MsG0480021775.01.T01:CDS |
GTAGCAACACATGATCACTA+TGG | 0.504040 | 4:-64157047 | MsG0480021775.01.T01:CDS |
GTTGTGGAGGAAAAGGTCAT+TGG | 0.504176 | 4:-64156803 | MsG0480021775.01.T01:CDS |
CGTGGCCGTGGTCATGGTCG+TGG | 0.506333 | 4:-64157011 | MsG0480021775.01.T01:CDS |
TTCCTAATGCTCGTAATGAA+TGG | 0.506622 | 4:-64157367 | MsG0480021775.01.T01:CDS |
GGACGTGGCGTGGTATGGAA+GGG | 0.514845 | 4:-64156978 | MsG0480021775.01.T01:CDS |
CGTGGACGTGGACGTGGACG+TGG | 0.519603 | 4:-64156993 | MsG0480021775.01.T01:CDS |
CATGGTCGTGGACGTGGACG+TGG | 0.524744 | 4:-64156999 | MsG0480021775.01.T01:CDS |
CATTAGAGATGAAAATATCC+AGG | 0.532865 | 4:-64156598 | MsG0480021775.01.T01:CDS |
GACGTGGCGTGGTATGGAAG+GGG | 0.539952 | 4:-64156977 | MsG0480021775.01.T01:CDS |
CGTGGTCATGGTCGTGGACG+TGG | 0.540833 | 4:-64157005 | MsG0480021775.01.T01:CDS |
TGGAGCACTACCAGTGGGAC+GGG | 0.544221 | 4:+64157085 | None:intergenic |
TCACTCGGCTCCCGTCCCAC+TGG | 0.549401 | 4:-64157095 | MsG0480021775.01.T01:CDS |
ATGGAGCACTACCAGTGGGA+CGG | 0.569862 | 4:+64157084 | None:intergenic |
TATGGACAAAATCGTGGTCG+TGG | 0.573891 | 4:-64157029 | MsG0480021775.01.T01:CDS |
GTCTGTAATCGAATATAACT+CGG | 0.574961 | 4:-64157318 | MsG0480021775.01.T01:CDS |
GAGAGTATTTGCTATCGTTG+TGG | 0.583351 | 4:-64156819 | MsG0480021775.01.T01:CDS |
ATTCATTACGAGCATTAGGA+AGG | 0.589984 | 4:+64157369 | None:intergenic |
CCTTATGAAGGTGGTGACGA+AGG | 0.598722 | 4:+64157480 | None:intergenic |
AGTATTTGCTATCGTTGTGG+AGG | 0.599695 | 4:-64156816 | MsG0480021775.01.T01:CDS |
ACGTGGACGTGGACGTGGCG+TGG | 0.619346 | 4:-64156988 | MsG0480021775.01.T01:CDS |
AGAATCAGCAGCATCTAAGT+GGG | 0.645955 | 4:+64156650 | None:intergenic |
CACGTCCACGACCATGACCA+CGG | 0.661673 | 4:+64157006 | None:intergenic |
GTGGTGACGAAGGAATATCA+TGG | 0.663314 | 4:+64157490 | None:intergenic |
ACTTCTCTATTAACACTGTG+TGG | 0.668278 | 4:-64157281 | MsG0480021775.01.T01:CDS |
TGGGAATGGAGCACTACCAG+TGG | 0.672955 | 4:+64157079 | None:intergenic |
GGGAATGGAGCACTACCAGT+GGG | 0.676344 | 4:+64157080 | None:intergenic |
GATCACTATGGACAAAATCG+TGG | 0.728183 | 4:-64157035 | MsG0480021775.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATGTTGTAAAGAATGATAT+TGG | - | Chr4:64157220-64157239 | MsG0480021775.01.T01:intron | 20.0% |
!! | ACTTCAAAATAAGGATAAAA+GGG | - | Chr4:64157351-64157370 | MsG0480021775.01.T01:CDS | 20.0% |
! | CACTTCAAAATAAGGATAAA+AGG | - | Chr4:64157350-64157369 | MsG0480021775.01.T01:CDS | 25.0% |
! | GAAAATGATGAAGATGATTA+TGG | - | Chr4:64157394-64157413 | MsG0480021775.01.T01:CDS | 25.0% |
! | TGAAGATGATTATGGTAATA+TGG | - | Chr4:64157402-64157421 | MsG0480021775.01.T01:CDS | 25.0% |
!! | TAAAGATCAACAAGATGTTT+TGG | + | Chr4:64157322-64157341 | None:intergenic | 25.0% |
!! | TTACAACATTTTTCATCTTC+TGG | + | Chr4:64157210-64157229 | None:intergenic | 25.0% |
!! | TTTGGGACAATTTAAAGAAA+GGG | - | Chr4:64156666-64156685 | MsG0480021775.01.T01:CDS | 25.0% |
!!! | CATTTTTTAGATCCTTATGA+AGG | + | Chr4:64156616-64156635 | None:intergenic | 25.0% |
!!! | GAGAAAATGTGTTTTTGTTT+TGG | + | Chr4:64157186-64157205 | None:intergenic | 25.0% |
AGAAGATCCAAAAGATCTTT+GGG | - | Chr4:64156649-64156668 | MsG0480021775.01.T01:CDS | 30.0% | |
ATGGTTATATTTGCGTTTAC+AGG | - | Chr4:64156733-64156752 | MsG0480021775.01.T01:CDS | 30.0% | |
CATTAGAGATGAAAATATCC+AGG | - | Chr4:64157483-64157502 | MsG0480021775.01.T01:CDS | 30.0% | |
CCAACAATCACTTCAAAATA+AGG | - | Chr4:64157342-64157361 | MsG0480021775.01.T01:CDS | 30.0% | |
GTCTGTAATCGAATATAACT+CGG | - | Chr4:64156763-64156782 | MsG0480021775.01.T01:CDS | 30.0% | |
TACATTAGATGCATGAAAAG+TGG | + | Chr4:64156866-64156885 | None:intergenic | 30.0% | |
TAGAAGATCCAAAAGATCTT+TGG | - | Chr4:64156648-64156667 | MsG0480021775.01.T01:CDS | 30.0% | |
! | AAATTGTCCCAAAGATCTTT+TGG | + | Chr4:64156659-64156678 | None:intergenic | 30.0% |
! | AAGATCTTTTGGATCTTCTA+TGG | + | Chr4:64156648-64156667 | None:intergenic | 30.0% |
! | AGCTTTGATGAAAAATCACT+CGG | - | Chr4:64156971-64156990 | MsG0480021775.01.T01:CDS | 30.0% |
! | TTTTTAGATCCTTATGAAGG+TGG | + | Chr4:64156613-64156632 | None:intergenic | 30.0% |
!! | CTTTGGGACAATTTAAAGAA+AGG | - | Chr4:64156665-64156684 | MsG0480021775.01.T01:CDS | 30.0% |
!! | GGTTTTAATCGTAATCACAA+TGG | - | Chr4:64157136-64157155 | MsG0480021775.01.T01:intron | 30.0% |
!!! | ACCTTTTAAAACCCTTTTCA+CGG | + | Chr4:64156906-64156925 | None:intergenic | 30.0% |
!!! | CCTTATTTTGAAGTGATTGT+TGG | + | Chr4:64157345-64157364 | None:intergenic | 30.0% |
AACCATTCATTACGAGCATT+AGG | + | Chr4:64156719-64156738 | None:intergenic | 35.0% | |
ACTTCTCTATTAACACTGTG+TGG | - | Chr4:64156800-64156819 | MsG0480021775.01.T01:CDS | 35.0% | |
ATTAACACTGTGTGGAGAAA+AGG | - | Chr4:64156808-64156827 | MsG0480021775.01.T01:CDS | 35.0% | |
ATTCATTACGAGCATTAGGA+AGG | + | Chr4:64156715-64156734 | None:intergenic | 35.0% | |
GGACAATTTAAAGAAAGGGT+TGG | - | Chr4:64156670-64156689 | MsG0480021775.01.T01:CDS | 35.0% | |
TGAGATGATCAATCTTCATC+AGG | + | Chr4:64157465-64157484 | None:intergenic | 35.0% | |
TTCCTAATGCTCGTAATGAA+TGG | - | Chr4:64156714-64156733 | MsG0480021775.01.T01:CDS | 35.0% | |
! | CTTTTGGATCTTCTATGGTA+AGG | + | Chr4:64156643-64156662 | None:intergenic | 35.0% |
!!! | ACCGTGAAAAGGGTTTTAAA+AGG | - | Chr4:64156902-64156921 | MsG0480021775.01.T01:CDS | 35.0% |
AAGAATCAGCAGCATCTAAG+TGG | + | Chr4:64157435-64157454 | None:intergenic | 40.0% | |
AGAATCAGCAGCATCTAAGT+GGG | + | Chr4:64157434-64157453 | None:intergenic | 40.0% | |
CAGCAACAATACCGTGAAAA+GGG | - | Chr4:64156892-64156911 | MsG0480021775.01.T01:CDS | 40.0% | |
CTTAATATCATGCCTGCTTG+TGG | - | Chr4:64156933-64156952 | MsG0480021775.01.T01:CDS | 40.0% | |
GATCACTATGGACAAAATCG+TGG | - | Chr4:64157046-64157065 | MsG0480021775.01.T01:CDS | 40.0% | |
GTAGCAACACATGATCACTA+TGG | - | Chr4:64157034-64157053 | MsG0480021775.01.T01:CDS | 40.0% | |
! | GAAGGATGACAGTTTTCTGA+TGG | + | Chr4:64156697-64156716 | None:intergenic | 40.0% |
! | GTGTTGCTACATTCACTTCT+GGG | + | Chr4:64157024-64157043 | None:intergenic | 40.0% |
! | TATTTTGTTCTGCCACAAGC+AGG | + | Chr4:64156948-64156967 | None:intergenic | 40.0% |
! | TGTGTTGCTACATTCACTTC+TGG | + | Chr4:64157025-64157044 | None:intergenic | 40.0% |
!! | AGTATTTGCTATCGTTGTGG+AGG | - | Chr4:64157265-64157284 | MsG0480021775.01.T01:intron | 40.0% |
!! | GAGAGTATTTGCTATCGTTG+TGG | - | Chr4:64157262-64157281 | MsG0480021775.01.T01:intron | 40.0% |
GCAGCAACAATACCGTGAAA+AGG | - | Chr4:64156891-64156910 | MsG0480021775.01.T01:CDS | 45.0% | |
GTTGTGGAGGAAAAGGTCAT+TGG | - | Chr4:64157278-64157297 | MsG0480021775.01.T01:CDS | 45.0% | |
TATGGACAAAATCGTGGTCG+TGG | - | Chr4:64157052-64157071 | MsG0480021775.01.T01:CDS | 45.0% | |
TGCTATCGTTGTGGAGGAAA+AGG | - | Chr4:64157271-64157290 | MsG0480021775.01.T01:intron | 45.0% | |
TTTCACGGTATTGTTGCTGC+AGG | + | Chr4:64156891-64156910 | None:intergenic | 45.0% | |
! | GCTACATTCACTTCTGGGAA+TGG | + | Chr4:64157019-64157038 | None:intergenic | 45.0% |
!!! | AAGATGTTTTGGCGTACGAC+AGG | + | Chr4:64157311-64157330 | None:intergenic | 45.0% |
CCTTCGTCACCACCTTCATA+AGG | - | Chr4:64156601-64156620 | MsG0480021775.01.T01:CDS | 50.0% | |
! | CCTTATGAAGGTGGTGACGA+AGG | + | Chr4:64156604-64156623 | None:intergenic | 50.0% |
GTATGGAAGGGGACGTGGTT+TGG | - | Chr4:64157115-64157134 | MsG0480021775.01.T01:CDS | 55.0% | |
! | ATGGAGCACTACCAGTGGGA+CGG | + | Chr4:64157000-64157019 | None:intergenic | 55.0% |
! | GGGAATGGAGCACTACCAGT+GGG | + | Chr4:64157004-64157023 | None:intergenic | 55.0% |
! | TGGGAATGGAGCACTACCAG+TGG | + | Chr4:64157005-64157024 | None:intergenic | 55.0% |
CAAAATCGTGGTCGTGGCCG+TGG | - | Chr4:64157058-64157077 | MsG0480021775.01.T01:CDS | 60.0% | |
CACGTCCACGACCATGACCA+CGG | + | Chr4:64157078-64157097 | None:intergenic | 60.0% | |
GACGTGGCGTGGTATGGAAG+GGG | - | Chr4:64157104-64157123 | MsG0480021775.01.T01:CDS | 60.0% | |
GGACGTGGCGTGGTATGGAA+GGG | - | Chr4:64157103-64157122 | MsG0480021775.01.T01:CDS | 60.0% | |
TGGACGTGGCGTGGTATGGA+AGG | - | Chr4:64157102-64157121 | MsG0480021775.01.T01:CDS | 60.0% | |
! | TGGAGCACTACCAGTGGGAC+GGG | + | Chr4:64156999-64157018 | None:intergenic | 60.0% |
CATGGTCGTGGACGTGGACG+TGG | - | Chr4:64157082-64157101 | MsG0480021775.01.T01:CDS | 65.0% | |
CGTGGTCATGGTCGTGGACG+TGG | - | Chr4:64157076-64157095 | MsG0480021775.01.T01:CDS | 65.0% | |
GACGTGGACGTGGCGTGGTA+TGG | - | Chr4:64157098-64157117 | MsG0480021775.01.T01:CDS | 65.0% | |
GCGTGGTATGGAAGGGGACG+TGG | - | Chr4:64157110-64157129 | MsG0480021775.01.T01:CDS | 65.0% | |
ACGTGGACGTGGACGTGGCG+TGG | - | Chr4:64157093-64157112 | MsG0480021775.01.T01:CDS | 70.0% | |
CGTGGACGTGGACGTGGACG+TGG | - | Chr4:64157088-64157107 | MsG0480021775.01.T01:CDS | 70.0% | |
CGTGGCCGTGGTCATGGTCG+TGG | - | Chr4:64157070-64157089 | MsG0480021775.01.T01:CDS | 70.0% | |
CGTGGTCGTGGCCGTGGTCA+TGG | - | Chr4:64157064-64157083 | MsG0480021775.01.T01:CDS | 70.0% | |
TCACTCGGCTCCCGTCCCAC+TGG | - | Chr4:64156986-64157005 | MsG0480021775.01.T01:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr4 | gene | 64156593 | 64157510 | 64156593 | ID=MsG0480021775.01;Name=MsG0480021775.01 |
Chr4 | mRNA | 64156593 | 64157510 | 64156593 | ID=MsG0480021775.01.T01;Parent=MsG0480021775.01;Name=MsG0480021775.01.T01;_AED=0.33;_eAED=0.48;_QI=0|0|0|1|1|1|2|0|262 |
Chr4 | exon | 64157274 | 64157510 | 64157274 | ID=MsG0480021775.01.T01:exon:20393;Parent=MsG0480021775.01.T01 |
Chr4 | exon | 64156593 | 64157144 | 64156593 | ID=MsG0480021775.01.T01:exon:20392;Parent=MsG0480021775.01.T01 |
Chr4 | CDS | 64157274 | 64157510 | 64157274 | ID=MsG0480021775.01.T01:cds;Parent=MsG0480021775.01.T01 |
Chr4 | CDS | 64156593 | 64157144 | 64156593 | ID=MsG0480021775.01.T01:cds;Parent=MsG0480021775.01.T01 |
Gene Sequence |
Protein sequence |