Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004510.01.T01 | XP_024637976.1 | 77.326 | 172 | 2 | 2 | 1 | 137 | 1 | 170 | 4.64E-81 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004510.01.T01 | Q94BU8 | 42.5 | 160 | 51 | 3 | 12 | 130 | 24 | 183 | 1.10E-33 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004510.01.T01 | A0A396JWV1 | 76.582 | 158 | 2 | 1 | 15 | 137 | 25 | 182 | 6.15e-74 | 228 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048842.01 | MsG0180004510.01 | -0.812574 | 3.958861e-51 | 2.526191e-48 |
| MsG0080048889.01 | MsG0180004510.01 | 0.822256 | 2.611135e-53 | 2.174179e-50 |
| MsG0080049023.01 | MsG0180004510.01 | -0.809984 | 1.444018e-50 | 8.601787e-48 |
| MsG0180000076.01 | MsG0180004510.01 | 0.820268 | 7.505045e-53 | 5.910353e-50 |
| MsG0180000551.01 | MsG0180004510.01 | 0.806773 | 6.989612e-50 | 3.826434e-47 |
| MsG0180001272.01 | MsG0180004510.01 | 0.828311 | 9.645370e-55 | 9.551565e-52 |
| MsG0180001290.01 | MsG0180004510.01 | 0.803424 | 3.509611e-49 | 1.763026e-46 |
| MsG0180002276.01 | MsG0180004510.01 | 0.807698 | 4.452471e-50 | 2.496693e-47 |
| MsG0180002984.01 | MsG0180004510.01 | 0.805130 | 1.548313e-49 | 8.127071e-47 |
| MsG0180004027.01 | MsG0180004510.01 | 0.905885 | 2.673745e-80 | 4.417969e-76 |
| MsG0180004126.01 | MsG0180004510.01 | 0.824488 | 7.853834e-54 | 6.966748e-51 |
| MsG0180004510.01 | MsG0180004559.01 | 0.807145 | 5.831746e-50 | 3.223468e-47 |
| MsG0180004510.01 | MsG0180004737.01 | -0.801776 | 7.674675e-49 | 3.696543e-46 |
| MsG0180004510.01 | MsG0180005272.01 | 0.875067 | 4.124843e-68 | 1.900728e-64 |
| MsG0180004510.01 | MsG0180005369.01 | -0.803452 | 3.462281e-49 | 1.740516e-46 |
| MsG0180004510.01 | MsG0180005514.01 | 0.820445 | 6.834133e-53 | 5.408620e-50 |
| MsG0180004510.01 | MsG0180005667.01 | 0.804149 | 2.481801e-49 | 1.270162e-46 |
| MsG0180004510.01 | MsG0180006026.01 | 0.871112 | 8.754719e-67 | 3.489525e-63 |
| MsG0180004510.01 | MsG0180006063.01 | -0.801870 | 7.341952e-49 | 3.544957e-46 |
| MsG0180004510.01 | MsG0180006076.01 | -0.806341 | 8.621182e-50 | 4.667747e-47 |
| MsG0180004510.01 | MsG0180006182.01 | 0.893433 | 6.311973e-75 | 6.009878e-71 |
| MsG0180004510.01 | MsG0180006191.01 | 0.859878 | 3.049275e-63 | 8.177020e-60 |
| MsG0180004510.01 | MsG0280006884.01 | 0.825004 | 5.935530e-54 | 5.344212e-51 |
| MsG0180004510.01 | MsG0280007419.01 | 0.850142 | 2.055920e-60 | 3.988160e-57 |
| MsG0180004510.01 | MsG0280007667.01 | 0.807524 | 4.846908e-50 | 2.705725e-47 |
| MsG0180004510.01 | MsG0280007786.01 | 0.806265 | 8.947987e-50 | 4.835523e-47 |
| MsG0180004510.01 | MsG0280007983.01 | 0.817259 | 3.617323e-52 | 2.621363e-49 |
| MsG0180004510.01 | MsG0280009241.01 | 0.859346 | 4.408337e-63 | 1.160679e-59 |
| MsG0180004510.01 | MsG0280010240.01 | 0.849808 | 2.550038e-60 | 4.892561e-57 |
| MsG0180004510.01 | MsG0380013041.01 | 0.862759 | 4.037702e-64 | 1.195902e-60 |
| MsG0180004510.01 | MsG0380014735.01 | -0.825442 | 4.678520e-54 | 4.264510e-51 |
| MsG0180004510.01 | MsG0380015871.01 | 0.856781 | 2.551196e-62 | 6.157444e-59 |
| MsG0180004510.01 | MsG0380016065.01 | -0.820229 | 7.659626e-53 | 6.025499e-50 |
| MsG0180004510.01 | MsG0380016110.01 | 0.814468 | 1.516946e-51 | 1.018756e-48 |
| MsG0180004510.01 | MsG0380016112.01 | 0.812189 | 4.804025e-51 | 3.034137e-48 |
| MsG0180004510.01 | MsG0380016449.01 | 0.808039 | 3.767176e-50 | 2.131392e-47 |
| MsG0180004510.01 | MsG0380016524.01 | 0.832944 | 7.078807e-56 | 8.032448e-53 |
| MsG0180004510.01 | MsG0380017024.01 | 0.835788 | 1.368506e-56 | 1.691124e-53 |
| MsG0180004510.01 | MsG0380017231.01 | 0.816173 | 6.337112e-52 | 4.458102e-49 |
| MsG0180004510.01 | MsG0380017240.01 | 0.814868 | 1.237524e-51 | 8.400187e-49 |
| MsG0180004510.01 | MsG0380017730.01 | 0.811653 | 6.287081e-51 | 3.913580e-48 |
| MsG0180004510.01 | MsG0380017898.01 | 0.812721 | 3.677086e-51 | 2.355485e-48 |
| MsG0180004510.01 | MsG0380017997.01 | 0.836424 | 9.434661e-57 | 1.188493e-53 |
| MsG0180004510.01 | MsG0380018007.01 | 0.842806 | 2.065299e-58 | 3.167383e-55 |
| MsG0180004510.01 | MsG0480018567.01 | 0.850794 | 1.348880e-60 | 2.673260e-57 |
| MsG0180004510.01 | MsG0480018788.01 | -0.805441 | 1.332810e-49 | 7.051801e-47 |
| MsG0180004510.01 | MsG0480019935.01 | 0.800978 | 1.118453e-48 | 5.279962e-46 |
| MsG0180004510.01 | MsG0480021433.01 | 0.806261 | 8.962761e-50 | 4.843098e-47 |
| MsG0180004510.01 | MsG0480021931.01 | 0.844068 | 9.506025e-59 | 1.517048e-55 |
| MsG0180004510.01 | MsG0480021958.01 | 0.814585 | 1.429495e-51 | 9.629921e-49 |
| MsG0180004510.01 | MsG0480022167.01 | 0.830970 | 2.175801e-55 | 2.328590e-52 |
| MsG0180004510.01 | MsG0480022407.01 | 0.863417 | 2.527089e-64 | 7.654408e-61 |
| MsG0180004510.01 | MsG0480022797.01 | 0.815332 | 9.760417e-52 | 6.709819e-49 |
| MsG0180004510.01 | MsG0480023195.01 | 0.801430 | 9.039540e-49 | 4.316000e-46 |
| MsG0180004510.01 | MsG0480023242.01 | -0.808145 | 3.575671e-50 | 2.028854e-47 |
| MsG0180004510.01 | MsG0480023244.01 | -0.824613 | 7.339601e-54 | 6.534984e-51 |
| MsG0180004510.01 | MsG0480023322.01 | 0.808186 | 3.505274e-50 | 1.991058e-47 |
| MsG0180004510.01 | MsG0480023324.01 | 0.875197 | 3.724613e-68 | 1.724261e-64 |
| MsG0180004510.01 | MsG0480023450.01 | 0.800147 | 1.651978e-48 | 7.635264e-46 |
| MsG0180004510.01 | MsG0480023484.01 | 0.808990 | 2.360858e-50 | 1.369588e-47 |
| MsG0180004510.01 | MsG0480023944.01 | 0.813735 | 2.201896e-51 | 1.449576e-48 |
| MsG0180004510.01 | MsG0580024119.01 | 0.800747 | 1.246599e-48 | 5.850089e-46 |
| MsG0180004510.01 | MsG0580024388.01 | 0.803220 | 3.867039e-49 | 1.932424e-46 |
| MsG0180004510.01 | MsG0580024478.01 | 0.809085 | 2.252115e-50 | 1.309910e-47 |
| MsG0180004510.01 | MsG0580024954.01 | 0.814914 | 1.208580e-51 | 8.213836e-49 |
| MsG0180004510.01 | MsG0580025093.01 | 0.808188 | 3.501108e-50 | 1.988824e-47 |
| MsG0180004510.01 | MsG0580025153.01 | -0.833201 | 6.111447e-56 | 6.988388e-53 |
| MsG0180004510.01 | MsG0580025385.01 | 0.864200 | 1.442956e-64 | 4.492590e-61 |
| MsG0180004510.01 | MsG0580025464.01 | 0.830291 | 3.189183e-55 | 3.345783e-52 |
| MsG0180004510.01 | MsG0580025620.01 | 0.824429 | 8.110744e-54 | 7.181848e-51 |
| MsG0180004510.01 | MsG0580025746.01 | 0.815635 | 8.355012e-52 | 5.791984e-49 |
| MsG0180004510.01 | MsG0580027413.01 | 0.814600 | 1.418769e-51 | 9.561585e-49 |
| MsG0180004510.01 | MsG0580028330.01 | 0.811231 | 7.765410e-51 | 4.780664e-48 |
| MsG0180004510.01 | MsG0580029696.01 | 0.823751 | 1.170179e-53 | 1.016657e-50 |
| MsG0180004510.01 | MsG0580029792.01 | -0.801718 | 7.888966e-49 | 3.794125e-46 |
| MsG0180004510.01 | MsG0580030179.01 | 0.890432 | 9.904499e-74 | 8.324598e-70 |
| MsG0180004510.01 | MsG0680031178.01 | 0.819808 | 9.563039e-53 | 7.435738e-50 |
| MsG0180004510.01 | MsG0680031463.01 | 0.803808 | 2.921647e-49 | 1.482189e-46 |
| MsG0180004510.01 | MsG0680031616.01 | 0.844164 | 8.954630e-59 | 1.433308e-55 |
| MsG0180004510.01 | MsG0680031686.01 | 0.850563 | 1.566210e-60 | 3.080463e-57 |
| MsG0180004510.01 | MsG0680034415.01 | 0.825593 | 4.307742e-54 | 3.943818e-51 |
| MsG0180004510.01 | MsG0680035584.01 | -0.817762 | 2.787478e-52 | 2.048150e-49 |
| MsG0180004510.01 | MsG0680035781.01 | 0.812689 | 3.736729e-51 | 2.391674e-48 |
| MsG0180004510.01 | MsG0780037232.01 | 0.828126 | 1.068872e-54 | 1.052844e-51 |
| MsG0180004510.01 | MsG0780037458.01 | -0.810276 | 1.249235e-50 | 7.497971e-48 |
| MsG0180004510.01 | MsG0780038305.01 | 0.804599 | 1.999067e-49 | 1.035015e-46 |
| MsG0180004510.01 | MsG0780038393.01 | 0.822407 | 2.408150e-53 | 2.013990e-50 |
| MsG0180004510.01 | MsG0780038810.01 | 0.845409 | 4.134415e-59 | 6.883713e-56 |
| MsG0180004510.01 | MsG0780039916.01 | 0.821401 | 4.116769e-53 | 3.345773e-50 |
| MsG0180004510.01 | MsG0780040021.01 | 0.828844 | 7.173540e-55 | 7.214063e-52 |
| MsG0180004510.01 | MsG0780040118.01 | 0.855295 | 6.943136e-62 | 1.595454e-58 |
| MsG0180004510.01 | MsG0780040119.01 | 0.808476 | 3.039933e-50 | 1.739952e-47 |
| MsG0180004510.01 | MsG0780040139.01 | 0.822248 | 2.622250e-53 | 2.182955e-50 |
| MsG0180004510.01 | MsG0780040266.01 | 0.824294 | 8.724166e-54 | 7.695158e-51 |
| MsG0180004510.01 | MsG0780040364.01 | 0.847022 | 1.503650e-59 | 2.637069e-56 |
| MsG0180004510.01 | MsG0780040564.01 | 0.843846 | 1.090099e-58 | 1.727643e-55 |
| MsG0180004510.01 | MsG0780040905.01 | 0.803872 | 2.832819e-49 | 1.439603e-46 |
| MsG0180004510.01 | MsG0780040990.01 | 0.803199 | 3.906215e-49 | 1.950954e-46 |
| MsG0180004510.01 | MsG0780041180.01 | 0.822037 | 2.934296e-53 | 2.427929e-50 |
| MsG0180004510.01 | MsG0780041206.01 | 0.822316 | 2.527851e-53 | 2.108530e-50 |
| MsG0180004510.01 | MsG0780041303.01 | 0.826915 | 2.087451e-54 | 1.984764e-51 |
| MsG0180004510.01 | MsG0780041363.01 | 0.875894 | 2.149673e-68 | 1.021263e-64 |
| MsG0180004510.01 | MsG0780041531.01 | -0.804623 | 1.976443e-49 | 1.023905e-46 |
| MsG0180004510.01 | MsG0780041548.01 | 0.805755 | 1.145442e-49 | 6.109933e-47 |
| MsG0180004510.01 | MsG0780041565.01 | 0.802512 | 5.417334e-49 | 2.658608e-46 |
| MsG0180004510.01 | MsG0780041591.01 | 0.804703 | 1.901554e-49 | 9.871842e-47 |
| MsG0180004510.01 | MsG0880042846.01 | 0.806406 | 8.353535e-50 | 4.530297e-47 |
| MsG0180004510.01 | MsG0880042927.01 | 0.805490 | 1.301485e-49 | 6.894821e-47 |
| MsG0180004510.01 | MsG0880043961.01 | 0.837933 | 3.879113e-57 | 5.116494e-54 |
| MsG0180004510.01 | MsG0880043983.01 | 0.821867 | 3.213670e-53 | 2.646439e-50 |
| MsG0180004510.01 | MsG0880043989.01 | 0.839368 | 1.652034e-57 | 2.276621e-54 |
| MsG0180004510.01 | MsG0880044792.01 | 0.829272 | 5.649770e-55 | 5.755060e-52 |
| MsG0180004510.01 | MsG0880045584.01 | 0.809083 | 2.254054e-50 | 1.310964e-47 |
| MsG0180004510.01 | MsG0880045852.01 | 0.823216 | 1.561011e-53 | 1.335652e-50 |
| MsG0180004510.01 | MsG0880045963.01 | 0.809557 | 1.784501e-50 | 1.051049e-47 |
| MsG0180004510.01 | MsG0880045989.01 | 0.804321 | 2.284564e-49 | 1.174394e-46 |
| MsG0180004510.01 | MsG0880046010.01 | -0.812155 | 4.888187e-51 | 3.084415e-48 |
| MsG0180004510.01 | MsG0880046137.01 | 0.833833 | 4.248406e-56 | 4.951284e-53 |
| MsG0180004510.01 | MsG0880046337.01 | 0.834570 | 2.777283e-56 | 3.309217e-53 |
| MsG0180004510.01 | MsG0880046630.01 | -0.816691 | 4.854325e-52 | 3.463370e-49 |
| MsG0180004510.01 | MsG0880046945.01 | 0.809025 | 2.320494e-50 | 1.347414e-47 |
| MsG0180004510.01 | MsG0880046983.01 | 0.826498 | 2.625560e-54 | 2.466368e-51 |
| MsG0180004510.01 | MsG0880047466.01 | 0.813795 | 2.136404e-51 | 1.408723e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004510.01.T01 | MTR_1g081420 | 67.901 | 162 | 13 | 3 | 1 | 126 | 1 | 159 | 7.84e-66 | 199 |
| MsG0180004510.01.T01 | MTR_1g081550 | 52.903 | 155 | 32 | 3 | 15 | 128 | 11 | 165 | 6.06e-45 | 144 |
| MsG0180004510.01.T01 | MTR_1g081450 | 80.220 | 91 | 3 | 1 | 1 | 76 | 1 | 91 | 1.32e-43 | 143 |
| MsG0180004510.01.T01 | MTR_1g081450 | 93.939 | 66 | 4 | 0 | 72 | 137 | 157 | 222 | 1.95e-36 | 124 |
| MsG0180004510.01.T01 | MTR_2g045280 | 47.500 | 160 | 43 | 3 | 12 | 130 | 39 | 198 | 3.49e-38 | 128 |
| MsG0180004510.01.T01 | MTR_4g124190 | 45.912 | 159 | 45 | 3 | 13 | 130 | 26 | 184 | 8.17e-37 | 124 |
| MsG0180004510.01.T01 | MTR_3g005755 | 50.725 | 138 | 29 | 3 | 13 | 128 | 75 | 195 | 2.21e-32 | 116 |
| MsG0180004510.01.T01 | MTR_1g081440 | 61.290 | 62 | 18 | 1 | 15 | 76 | 18 | 73 | 1.24e-19 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180004510.01.T01 | AT5G28050 | 42.500 | 160 | 51 | 3 | 12 | 130 | 24 | 183 | 1.13e-34 | 119 |
| MsG0180004510.01.T01 | AT5G28050 | 42.500 | 160 | 51 | 3 | 12 | 130 | 43 | 202 | 1.56e-34 | 119 |
| MsG0180004510.01.T01 | AT5G28050 | 42.500 | 160 | 51 | 3 | 12 | 130 | 129 | 288 | 6.87e-34 | 120 |
Find 21 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGGATTTAGTAATTATAT+TGG | 0.292521 | 1:+78991831 | MsG0180004510.01.T01:CDS |
| ATCAAGCAGAGAATGGTTTA+TGG | 0.295789 | 1:+78991783 | MsG0180004510.01.T01:intron |
| GCAGAAGCTGCAGGATCAAT+TGG | 0.398102 | 1:+78991813 | MsG0180004510.01.T01:CDS |
| CGAACAATCAGTGCACCATA+TGG | 0.427952 | 1:-78990676 | None:intergenic |
| GCATATGAAGCTGTTGAATC+TGG | 0.453061 | 1:+78990643 | MsG0180004510.01.T01:CDS |
| GCGGCTACTCCTGCTGCTAA+TGG | 0.461836 | 1:+78990477 | MsG0180004510.01.T01:CDS |
| TTTAGTAATTATATTGGCAA+GGG | 0.530272 | 1:+78991837 | MsG0180004510.01.T01:CDS |
| GAACAATCAGTGCACCATAT+GGG | 0.543114 | 1:-78990675 | None:intergenic |
| ATTTAGTAATTATATTGGCA+AGG | 0.547598 | 1:+78991836 | MsG0180004510.01.T01:CDS |
| GGAGCCACAGCAGAAGCTGC+AGG | 0.548767 | 1:+78991804 | MsG0180004510.01.T01:CDS |
| ATGATCTCAGCATGAGCAGT+TGG | 0.550399 | 1:-78990751 | None:intergenic |
| TTAGTATTACCATTAGCAGC+AGG | 0.551637 | 1:-78990486 | None:intergenic |
| GAAGACAAAGGACAAGGTAA+AGG | 0.557065 | 1:+78991932 | MsG0180004510.01.T01:CDS |
| TGATCCTGCAGCTTCTGCTG+TGG | 0.574900 | 1:-78991808 | None:intergenic |
| TCTGGTGATGGATACCCATA+TGG | 0.575775 | 1:+78990661 | MsG0180004510.01.T01:CDS |
| AGAAGTATTTGAGAAGACAA+AGG | 0.606818 | 1:+78991920 | MsG0180004510.01.T01:CDS |
| GAAGCTGTTGAATCTGGTGA+TGG | 0.621594 | 1:+78990649 | MsG0180004510.01.T01:CDS |
| TCTCGTTATCCCAGCTGCAG+AGG | 0.636736 | 1:+78990582 | MsG0180004510.01.T01:intron |
| CATCATGGAACATGATGCTG+CGG | 0.653351 | 1:+78990458 | None:intergenic |
| ATTTGAGAAGACAAAGGACA+AGG | 0.678760 | 1:+78991926 | MsG0180004510.01.T01:CDS |
| TGAGATCATTGCTATAAGAG+AGG | 0.679141 | 1:+78990765 | MsG0180004510.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATGTATGATTTTTTTTAA+TGG | - | Chr1:78990981-78991000 | None:intergenic | 10.0% |
| !! | AATATAGTTCAAATTTCATA+AGG | + | Chr1:78991314-78991333 | MsG0180004510.01.T01:intron | 15.0% |
| !! | ATATAGTTCAAATTTCATAA+GGG | + | Chr1:78991315-78991334 | MsG0180004510.01.T01:intron | 15.0% |
| !! | ATTGGATTTAGTAATTATAT+TGG | + | Chr1:78991831-78991850 | MsG0180004510.01.T01:CDS | 15.0% |
| !!! | AAAAAACACATTTTAACAAA+TGG | - | Chr1:78991123-78991142 | None:intergenic | 15.0% |
| !!! | TATTCATTTTTCAAAAATCA+AGG | + | Chr1:78991673-78991692 | MsG0180004510.01.T01:intron | 15.0% |
| !! | ATTCCAATTAGTATAACATA+AGG | - | Chr1:78991560-78991579 | None:intergenic | 20.0% |
| !! | ATTTAGTAATTATATTGGCA+AGG | + | Chr1:78991836-78991855 | MsG0180004510.01.T01:CDS | 20.0% |
| !! | TAAACAGAAATTATGATATC+TGG | + | Chr1:78991195-78991214 | MsG0180004510.01.T01:intron | 20.0% |
| !! | TTACCTTATGTTATACTAAT+TGG | + | Chr1:78991554-78991573 | MsG0180004510.01.T01:intron | 20.0% |
| !! | TTTAGTAATTATATTGGCAA+GGG | + | Chr1:78991837-78991856 | MsG0180004510.01.T01:CDS | 20.0% |
| !!! | AATAGTTTGTTAAATGAAAG+AGG | + | Chr1:78991011-78991030 | MsG0180004510.01.T01:intron | 20.0% |
| !!! | CTTCATATATTATTGCTTTT+TGG | + | Chr1:78990520-78990539 | MsG0180004510.01.T01:intron | 20.0% |
| !!! | GACAATTTGATATTTTGAAT+AGG | - | Chr1:78991246-78991265 | None:intergenic | 20.0% |
| ! | AGAAATTATGATATCTGGAT+CGG | + | Chr1:78991200-78991219 | MsG0180004510.01.T01:intron | 25.0% |
| ! | ATTTGAATAACAAATTGAGG+AGG | + | Chr1:78991451-78991470 | MsG0180004510.01.T01:intron | 25.0% |
| ! | CACATTTGAATAACAAATTG+AGG | + | Chr1:78991448-78991467 | MsG0180004510.01.T01:intron | 25.0% |
| ! | TTCGAGATAAAAAAGATAGA+TGG | + | Chr1:78991876-78991895 | MsG0180004510.01.T01:CDS | 25.0% |
| !! | AATACTTAGAAGTACATTTC+AGG | - | Chr1:78990561-78990580 | None:intergenic | 25.0% |
| !! | ATAAGATTCTTCAGGTTATT+CGG | - | Chr1:78991375-78991394 | None:intergenic | 25.0% |
| !!! | ATATTATTGCTTTTTGGTCA+AGG | + | Chr1:78990526-78990545 | MsG0180004510.01.T01:intron | 25.0% |
| !!! | GTAATTCGACATTTTTTTGA+GGG | + | Chr1:78990836-78990855 | MsG0180004510.01.T01:intron | 25.0% |
| !!! | TGTAATTCGACATTTTTTTG+AGG | + | Chr1:78990835-78990854 | MsG0180004510.01.T01:intron | 25.0% |
| AAGAATTTAGGGAGAAACAA+AGG | - | Chr1:78991155-78991174 | None:intergenic | 30.0% | |
| AGTTCAAATTTCATAAGGGA+CGG | + | Chr1:78991319-78991338 | MsG0180004510.01.T01:intron | 30.0% | |
| ATGATTGATATGGTTGAATG+AGG | + | Chr1:78991079-78991098 | MsG0180004510.01.T01:intron | 30.0% | |
| ATGCCGAAGTAAAGAATTTA+GGG | - | Chr1:78991166-78991185 | None:intergenic | 30.0% | |
| GTTTCCAACAATGATTGATA+TGG | + | Chr1:78991069-78991088 | MsG0180004510.01.T01:intron | 30.0% | |
| TATGCCGAAGTAAAGAATTT+AGG | - | Chr1:78991167-78991186 | None:intergenic | 30.0% | |
| TATTGTGAAGACAAAATGAG+AGG | - | Chr1:78991712-78991731 | None:intergenic | 30.0% | |
| TCAACCATATCAATCATTGT+TGG | - | Chr1:78991076-78991095 | None:intergenic | 30.0% | |
| TCTACAAGTTGTTAACTCAA+TGG | + | Chr1:78991264-78991283 | MsG0180004510.01.T01:intron | 30.0% | |
| TCTCCCTAAATTCTTTACTT+CGG | + | Chr1:78991160-78991179 | MsG0180004510.01.T01:intron | 30.0% | |
| TGATTGATATGGTTGAATGA+GGG | + | Chr1:78991080-78991099 | MsG0180004510.01.T01:intron | 30.0% | |
| TTGTTAAATGAAAGAGGTCT+TGG | + | Chr1:78991017-78991036 | MsG0180004510.01.T01:intron | 30.0% | |
| ! | TGCTGAAAGTTCATTTTGTT+TGG | + | Chr1:78991492-78991511 | MsG0180004510.01.T01:intron | 30.0% |
| !! | AGAAGTATTTGAGAAGACAA+AGG | + | Chr1:78991920-78991939 | MsG0180004510.01.T01:CDS | 30.0% |
| ACTAATTGGAATTTACCTGC+AGG | + | Chr1:78991568-78991587 | MsG0180004510.01.T01:intron | 35.0% | |
| ATATATGTCCATACAGCAGA+TGG | - | Chr1:78991399-78991418 | None:intergenic | 35.0% | |
| ATATCTGGATCGGTATAATC+TGG | + | Chr1:78991210-78991229 | MsG0180004510.01.T01:intron | 35.0% | |
| ATCAAGCAGAGAATGGTTTA+TGG | + | Chr1:78991783-78991802 | MsG0180004510.01.T01:intron | 35.0% | |
| ATCATTGTTGGAAACCAAAG+TGG | - | Chr1:78991064-78991083 | None:intergenic | 35.0% | |
| ATCTGCTGTATGGACATATA+TGG | + | Chr1:78991398-78991417 | MsG0180004510.01.T01:intron | 35.0% | |
| ATCTTAATATCAGGCCACTT+TGG | + | Chr1:78991047-78991066 | MsG0180004510.01.T01:intron | 35.0% | |
| ATCTTATACCATCTGCTGTA+TGG | + | Chr1:78991388-78991407 | MsG0180004510.01.T01:intron | 35.0% | |
| ATTTGAGAAGACAAAGGACA+AGG | + | Chr1:78991926-78991945 | MsG0180004510.01.T01:CDS | 35.0% | |
| CAGATGGTATAAGATTCTTC+AGG | - | Chr1:78991383-78991402 | None:intergenic | 35.0% | |
| CTAAGTGATTAAAAGAGACG+AGG | + | Chr1:78990882-78990901 | MsG0180004510.01.T01:intron | 35.0% | |
| GAATAACAAATTGAGGAGGT+TGG | + | Chr1:78991455-78991474 | MsG0180004510.01.T01:intron | 35.0% | |
| TATTCACATCAAGCAGAGAA+TGG | + | Chr1:78991776-78991795 | MsG0180004510.01.T01:intron | 35.0% | |
| TGAGATCATTGCTATAAGAG+AGG | + | Chr1:78990765-78990784 | MsG0180004510.01.T01:CDS | 35.0% | |
| TTAGTATTACCATTAGCAGC+AGG | - | Chr1:78990489-78990508 | None:intergenic | 35.0% | |
| ! | ATCTCAGTATCAGACAGTTT+TGG | + | Chr1:78991421-78991440 | MsG0180004510.01.T01:intron | 35.0% |
| ! | GTTAGTGTTTTCTCTTTGTG+AGG | - | Chr1:78990931-78990950 | None:intergenic | 35.0% |
| !! | GGAGTGTTGATCTTAATATC+AGG | + | Chr1:78991038-78991057 | MsG0180004510.01.T01:intron | 35.0% |
| !!! | TCGACATTTTTTTGAGGGTT+GGG | + | Chr1:78990841-78990860 | MsG0180004510.01.T01:intron | 35.0% |
| !!! | TTCGACATTTTTTTGAGGGT+TGG | + | Chr1:78990840-78990859 | MsG0180004510.01.T01:intron | 35.0% |
| GAACAATCAGTGCACCATAT+GGG | - | Chr1:78990678-78990697 | None:intergenic | 40.0% | |
| GAAGACAAAGGACAAGGTAA+AGG | + | Chr1:78991932-78991951 | MsG0180004510.01.T01:CDS | 40.0% | |
| GATATGGTTGAATGAGGGAT+TGG | + | Chr1:78991085-78991104 | MsG0180004510.01.T01:intron | 40.0% | |
| GCATATGAAGCTGTTGAATC+TGG | + | Chr1:78990643-78990662 | MsG0180004510.01.T01:CDS | 40.0% | |
| TGAATAGCACCAAAGCACAT+TGG | - | Chr1:78991659-78991678 | None:intergenic | 40.0% | |
| ATGATCTCAGCATGAGCAGT+TGG | - | Chr1:78990754-78990773 | None:intergenic | 45.0% | |
| CGAACAATCAGTGCACCATA+TGG | - | Chr1:78990679-78990698 | None:intergenic | 45.0% | |
| CTGGATAAAGTTTCCCTTGC+TGG | + | Chr1:78991602-78991621 | MsG0180004510.01.T01:intron | 45.0% | |
| GAACCTTGTCCAATGTGCTT+TGG | + | Chr1:78991647-78991666 | MsG0180004510.01.T01:intron | 45.0% | |
| GAAGCTGTTGAATCTGGTGA+TGG | + | Chr1:78990649-78990668 | MsG0180004510.01.T01:CDS | 45.0% | |
| GACGAGGAGTTAAAAGAACG+TGG | + | Chr1:78990898-78990917 | MsG0180004510.01.T01:intron | 45.0% | |
| GTACATTTCACAGCCAGCAA+GGG | - | Chr1:78991618-78991637 | None:intergenic | 45.0% | |
| TGTACATTTCACAGCCAGCA+AGG | - | Chr1:78991619-78991638 | None:intergenic | 45.0% | |
| !! | TCTGGTGATGGATACCCATA+TGG | + | Chr1:78990661-78990680 | MsG0180004510.01.T01:CDS | 45.0% |
| CCTGCAGGCTTGTAAAAAGC+TGG | + | Chr1:78991583-78991602 | MsG0180004510.01.T01:intron | 50.0% | |
| GCACCAAAGCACATTGGACA+AGG | - | Chr1:78991653-78991672 | None:intergenic | 50.0% | |
| GCAGAAGCTGCAGGATCAAT+TGG | + | Chr1:78991813-78991832 | MsG0180004510.01.T01:CDS | 50.0% | |
| TGTCTCTATCCTCTGCAGCT+GGG | - | Chr1:78990594-78990613 | None:intergenic | 50.0% | |
| ! | CCAGCTTTTTACAAGCCTGC+AGG | - | Chr1:78991586-78991605 | None:intergenic | 50.0% |
| CTGTCTCTATCCTCTGCAGC+TGG | - | Chr1:78990595-78990614 | None:intergenic | 55.0% | |
| TCTCGTTATCCCAGCTGCAG+AGG | + | Chr1:78990582-78990601 | MsG0180004510.01.T01:intron | 55.0% | |
| TGATCCTGCAGCTTCTGCTG+TGG | - | Chr1:78991811-78991830 | None:intergenic | 55.0% | |
| GCGGCTACTCCTGCTGCTAA+TGG | + | Chr1:78990477-78990496 | MsG0180004510.01.T01:CDS | 60.0% | |
| GGAGCCACAGCAGAAGCTGC+AGG | + | Chr1:78991804-78991823 | MsG0180004510.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 78990462 | 78991977 | 78990462 | ID=MsG0180004510.01;Name=MsG0180004510.01 |
| Chr1 | mRNA | 78990462 | 78991977 | 78990462 | ID=MsG0180004510.01.T01;Parent=MsG0180004510.01;Name=MsG0180004510.01.T01;_AED=0.46;_eAED=0.48;_QI=0|0|0|1|1|1|3|0|137 |
| Chr1 | exon | 78990462 | 78990498 | 78990462 | ID=MsG0180004510.01.T01:exon:15266;Parent=MsG0180004510.01.T01 |
| Chr1 | exon | 78990596 | 78990786 | 78990596 | ID=MsG0180004510.01.T01:exon:15267;Parent=MsG0180004510.01.T01 |
| Chr1 | exon | 78991792 | 78991977 | 78991792 | ID=MsG0180004510.01.T01:exon:15268;Parent=MsG0180004510.01.T01 |
| Chr1 | CDS | 78990462 | 78990498 | 78990462 | ID=MsG0180004510.01.T01:cds;Parent=MsG0180004510.01.T01 |
| Chr1 | CDS | 78990596 | 78990786 | 78990596 | ID=MsG0180004510.01.T01:cds;Parent=MsG0180004510.01.T01 |
| Chr1 | CDS | 78991792 | 78991977 | 78991792 | ID=MsG0180004510.01.T01:cds;Parent=MsG0180004510.01.T01 |
| Gene Sequence |
| Protein sequence |
