AlfalfaGEDB | MsG0480022909.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022909.01

KEGG: -
GO: -
PFAM: PF03763

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022909.01.T01	XP_013446495.1	94.14	529	30	1	1	529	1	528	0	1028

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022909.01.T01	Q7XII4	33.621	116	77	0	403	518	195	310	1.56E-12	72

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022909.01.T01	A0A072TSX5	94.140	529	30	1	1	529	1	528	0.0	1028

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180005125.01	MsG0480022909.01	0.809680	1.678651e-50	9.919785e-48
MsG0180006226.01	MsG0480022909.01	-0.815446	9.206735e-52	6.349098e-49
MsG0280010794.01	MsG0480022909.01	0.837782	4.242513e-57	5.570199e-54
MsG0380015793.01	MsG0480022909.01	-0.806671	7.344600e-50	4.010101e-47
MsG0480022909.01	MsG0580028605.01	0.816080	6.650890e-52	4.666965e-49
MsG0480022909.01	MsG0680034061.01	0.810999	8.718142e-51	5.335096e-48
MsG0480022909.01	MsG0780039950.01	0.812039	5.180236e-51	3.258133e-48
MsG0480022909.01	MsG0880042811.01	0.800788	1.222697e-48	5.743814e-46
MsG0480022909.01	MsG0880045631.01	0.809727	1.640335e-50	9.705419e-48
MsG0480022909.01	MsG0880046328.01	0.809689	1.670993e-50	9.876901e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022909.01.T01	MTR_8g079482	94.140	529	30	1	1	529	1	528	0.0	1028
MsG0480022909.01.T01	MTR_8g079482	94.305	439	24	1	91	529	1	438	0.0	861
MsG0480022909.01.T01	MTR_8g080180	39.241	237	109	5	289	524	151	353	6.25e-36	137
MsG0480022909.01.T01	MTR_8g023130	26.154	390	251	10	152	525	86	454	1.29e-17	85.9
MsG0480022909.01.T01	MTR_1g019280	24.874	398	241	12	144	525	262	617	2.51e-16	82.4
MsG0480022909.01.T01	MTR_1g019280	24.623	398	242	12	144	525	200	555	3.08e-16	82.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022909.01.T01	AT1G30320	53.176	551	193	18	1	529	1	508	2.12e-168	486
MsG0480022909.01.T01	AT2G02170	37.455	550	254	19	1	525	1	485	1.68e-68	228
MsG0480022909.01.T01	AT2G02170	37.455	550	254	19	1	525	1	485	1.68e-68	228
MsG0480022909.01.T01	AT2G02170	37.455	550	254	19	1	525	1	485	1.68e-68	228
MsG0480022909.01.T01	AT2G02170	37.455	550	254	19	1	525	1	485	1.68e-68	228
MsG0480022909.01.T01	AT2G02170	41.299	385	185	11	154	525	4	360	7.67e-61	204
MsG0480022909.01.T01	AT2G02170	41.299	385	185	11	154	525	4	360	7.67e-61	204
MsG0480022909.01.T01	AT1G67590	31.043	393	184	10	136	520	20	333	1.64e-41	152
MsG0480022909.01.T01	AT1G67590	29.080	337	152	10	136	464	20	277	9.91e-27	110
MsG0480022909.01.T01	AT1G53860	27.072	362	188	11	158	508	119	415	6.94e-16	80.5

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Find 166 sgRNAs with CRISPR-Local

Find 531 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTGCTGCTTTGTGGG+AGG	0.698856	4:+78423264	MsG0480022909.01.T01:CDS
AAACTGAGGATGAAGTTATT+AGG	0.255888	4:+78421563	MsG0480022909.01.T01:CDS
AAATCGCTTGCCAACAAGTA+TGG	0.364627	4:+78422356	MsG0480022909.01.T01:CDS
AACATCCCCTTCAAGGCTTG+AGG	0.575361	4:+78421625	MsG0480022909.01.T01:CDS
AACTGAGGATGAAGTTATTA+GGG	0.391166	4:+78421564	MsG0480022909.01.T01:CDS
AACTTCATCCTCAGTTTACT+AGG	0.419998	4:-78421557	None:intergenic
AACTTGCAGATTAAAGCGTG+AGG	0.643053	4:+78423387	MsG0480022909.01.T01:intron
AAGAAATGAAGATAAAGACT+AGG	0.548657	4:+78423107	MsG0480022909.01.T01:CDS
AAGGTTCTTGACTTGGCAAC+GGG	0.361658	4:-78422919	None:intergenic
AAGTCAATGTCCCATAAGTA+TGG	0.393607	4:+78424411	MsG0480022909.01.T01:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATGGGTCAGTTATTC+CGG	+	Chr4:78418873-78418892	MsG0480022909.01.T01:intron	30.0%
AAAATAAAAGAGAGATGACG+AGG	+	Chr4:78414406-78414425	MsG0480022909.01.T01:intron	30.0%
AAACCATAAGTGTGGTTTAA+TGG	-	Chr4:78414224-78414243	None:intergenic	30.0%
AAACCATTAAACCACACTTA+TGG	+	Chr4:78414218-78414237	MsG0480022909.01.T01:intron	30.0%
AAACTGAGGATGAAGTTATT+AGG	+	Chr4:78421563-78421582	MsG0480022909.01.T01:CDS	30.0%
AAATCAAGGTAAAGGAATGT+TGG	-	Chr4:78420842-78420861	None:intergenic	30.0%
AACTGAGGATGAAGTTATTA+GGG	+	Chr4:78421564-78421583	MsG0480022909.01.T01:CDS	30.0%
AATGGTGAAAAAGATTGCTA+TGG	+	Chr4:78423976-78423995	MsG0480022909.01.T01:CDS	30.0%
ACACGTAATGTAATTGGAAT+AGG	-	Chr4:78424110-78424129	None:intergenic	30.0%
ACATTGTAACTTTGTGAAAG+TGG	-	Chr4:78421825-78421844	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	78413138	78424463	78413138	ID=MsG0480022909.01;Name=MsG0480022909.01
Chr4	mRNA	78413138	78424463	78413138	ID=MsG0480022909.01.T01;Parent=MsG0480022909.01;Name=MsG0480022909.01.T01;_AED=0.36;_eAED=0.36;_QI=486\|0.55\|0.5\|0.6\|0.77\|0.9\|10\|319\|529
Chr4	exon	78413138	78413356	78413138	ID=MsG0480022909.01.T01:exon:23437;Parent=MsG0480022909.01.T01
Chr4	exon	78413446	78413533	78413446	ID=MsG0480022909.01.T01:exon:23438;Parent=MsG0480022909.01.T01
Chr4	exon	78413616	78413643	78413616	ID=MsG0480022909.01.T01:exon:23439;Parent=MsG0480022909.01.T01
Chr4	exon	78413880	78414011	78413880	ID=MsG0480022909.01.T01:exon:23440;Parent=MsG0480022909.01.T01
Chr4	exon	78420782	78420830	78420782	ID=MsG0480022909.01.T01:exon:23441;Parent=MsG0480022909.01.T01
Chr4	exon	78421542	78421704	78421542	ID=MsG0480022909.01.T01:exon:23442;Parent=MsG0480022909.01.T01
Chr4	exon	78421986	78422645	78421986	ID=MsG0480022909.01.T01:exon:23443;Parent=MsG0480022909.01.T01
Chr4	exon	78422867	78423314	78422867	ID=MsG0480022909.01.T01:exon:23444;Parent=MsG0480022909.01.T01
Chr4	exon	78423396	78423477	78423396	ID=MsG0480022909.01.T01:exon:23445;Parent=MsG0480022909.01.T01
Chr4	exon	78423938	78424463	78423938	ID=MsG0480022909.01.T01:exon:23446;Parent=MsG0480022909.01.T01
Chr4	five_prime_UTR	78413138	78413356	78413138	ID=MsG0480022909.01.T01:five_prime_utr;Parent=MsG0480022909.01.T01
Chr4	five_prime_UTR	78413446	78413533	78413446	ID=MsG0480022909.01.T01:five_prime_utr;Parent=MsG0480022909.01.T01
Chr4	five_prime_UTR	78413616	78413643	78413616	ID=MsG0480022909.01.T01:five_prime_utr;Parent=MsG0480022909.01.T01
Chr4	five_prime_UTR	78413880	78414011	78413880	ID=MsG0480022909.01.T01:five_prime_utr;Parent=MsG0480022909.01.T01
Chr4	five_prime_UTR	78420782	78420800	78420782	ID=MsG0480022909.01.T01:five_prime_utr;Parent=MsG0480022909.01.T01
Chr4	CDS	78420801	78420830	78420801	ID=MsG0480022909.01.T01:cds;Parent=MsG0480022909.01.T01
Chr4	CDS	78421542	78421704	78421542	ID=MsG0480022909.01.T01:cds;Parent=MsG0480022909.01.T01
Chr4	CDS	78421986	78422645	78421986	ID=MsG0480022909.01.T01:cds;Parent=MsG0480022909.01.T01
Chr4	CDS	78422867	78423314	78422867	ID=MsG0480022909.01.T01:cds;Parent=MsG0480022909.01.T01
Chr4	CDS	78423396	78423477	78423396	ID=MsG0480022909.01.T01:cds;Parent=MsG0480022909.01.T01
Chr4	CDS	78423938	78424144	78423938	ID=MsG0480022909.01.T01:cds;Parent=MsG0480022909.01.T01
Chr4	three_prime_UTR	78424145	78424463	78424145	ID=MsG0480022909.01.T01:three_prime_utr;Parent=MsG0480022909.01.T01

Gene Sequence

>MsG0480022909.01.T01

ATGGAGTACGAGAGAATAGAGAAACCTCAGACTGGAATAATTTCTCCTAGTAAACTGAGGATGAAGTTATTAGGGCCTAGGAAGAAGGATGGATCCAACAGTAACTCTTCTAGAACATCCCCTTCAAGGCTTGAGGATCCTGAATTTGTCAATAGCCTACTTTCCTCTAACGATGACAACCTTGATTATGAAGTTACATCTCCAAGCTTAGAAGTTTTGTCATCAAAGCCATTTAGGGATGCGGTACTGGACCAGAGACTAAAGGAAACAGTTCCCATGGAAAATGGTAACACAGGACGTGTAAAGATGCAGCATTTTCATAAGGTTGACACTGGAAGTTCGAGCACAATTCATCCGGTGAGGACAACAGAAGATGAAAATCTTGATTATGACAGTCAAGCTAGCTCATCCAGTTTCGAGTTTGACAAAGGGGAGAGACCGGTGAGCAATCATGTAAGTAGATCCCTGTTGAGACCTATTCCTTCTAAGTGGAACGATGCCGAGAAATGGATAATGAATAGGCAACATATACAAACTCGAAAGAACAACATACATAGCCAAGCAAATCGCTTGCCAACAAGTATGGCAAGGGTTGTTCCAGAGTCCGGTAATTTTGATCATAAGCTCCCGACAAGCAAGGTTGCAGAAACAAAACGAGTTGATTACTGTCAACCAACATCACATTCACATATGGCATTCGAGAAATTCTCTTTTGTTCCATCTGATGCTCATTCGGTTTCTGGTCAAGCACATGGAAAACCACCTGTAGTGGAATCTTTTCCCCAAAGCAAAGATTTAAAGGAAGTAAATGAAGTGGATTTATCTTGTACAACAAGTATAGATGACCAAACAGCATTTCCCGGTATAAGATCTGTTGCCATGAGAGATATGGGAACTGAGATGACCCCGTTGCCAAGTCAAGAACCTTCGCAGACAACCACTCCTGTTGGTTCGGCAACTCCAATTCGCAGCCCAATTTCATCAATGCCTTCAACTCCTAGGAGAGGTGCACCAGCTCCTACGCCTTTGGGCTACACAACCGATGAGGATCCACAGTTTCGAAATGAAAACAGTAGAAAGCAATTGTCCGAAGAAGAAATGAAGATAAAGACTAGGAGAGAGATTGCAGCCCTTGGTATGCAGCTTGGGAAAATGAATATTGCGGCGTGGGCAAGTAAAGATGACGAAGAAAGTAAAAAATCTGCTGGCCGCGACACAGATACTAAAGAACAAGAGAGAATTGAATTTGAAAAACGTGCTGCTTTGTGGGAGGAAGCTGAAAAATCTAAACATACTGCAAGATTAAAGCGTGAGGAAATCAAAATTCAAGCATGGGAAAGTCAGCAGAAGGCCAAATTAGAAGCCGAAATGAGAAGAACCGAGGCCAAAGTTGAGCAAATGAGAGCACAGACACATGCAAAAATGGTGAAAAAGATTGCTATGGCGAGGCAAAGATCAGAAGAAAAACGTGCACAAGCTGATTCTAGAAAAAATAGAGAAGCAGAAAGAACTGCAGCTCAAGCAGAATACATACGCCAAACAGGGAAAATGCCCTATTCCAATTACATTACGTGTTGTGGCTGGCTGTGA

Protein sequence

>MsG0480022909.01.T01

MEYERIEKPQTGIISPSKLRMKLLGPRKKDGSNSNSSRTSPSRLEDPEFVNSLLSSNDDNLDYEVTSPSLEVLSSKPFRDAVLDQRLKETVPMENGNTGRVKMQHFHKVDTGSSSTIHPVRTTEDENLDYDSQASSSSFEFDKGERPVSNHVSRSLLRPIPSKWNDAEKWIMNRQHIQTRKNNIHSQANRLPTSMARVVPESGNFDHKLPTSKVAETKRVDYCQPTSHSHMAFEKFSFVPSDAHSVSGQAHGKPPVVESFPQSKDLKEVNEVDLSCTTSIDDQTAFPGIRSVAMRDMGTEMTPLPSQEPSQTTTPVGSATPIRSPISSMPSTPRRGAPAPTPLGYTTDEDPQFRNENSRKQLSEEEMKIKTRREIAALGMQLGKMNIAAWASKDDEESKKSAGRDTDTKEQERIEFEKRAALWEEAEKSKHTARLKREEIKIQAWESQQKAKLEAEMRRTEAKVEQMRAQTHAKMVKKIAMARQRSEEKRAQADSRKNREAERTAAQAEYIRQTGKMPYSNYITCCGWL*