AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005125.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005125.01.T01 MTR_1g094065 99.565 230 1 0 1 230 1 230 2.76e-172 473
MsG0180005125.01.T01 MTR_1g035360 72.489 229 61 2 1 228 1 228 7.96e-120 340
MsG0180005125.01.T01 MTR_2g085075 35.976 164 99 2 71 228 453 616 5.90e-27 108
MsG0180005125.01.T01 MTR_7g105220 33.113 151 95 2 83 227 13 163 9.76e-23 90.9
MsG0180005125.01.T01 MTR_8g036015 33.117 154 95 3 83 229 4 156 1.29e-18 80.1
MsG0180005125.01.T01 MTR_5g015500 34.641 153 92 3 80 225 305 456 4.82e-18 82.8
MsG0180005125.01.T01 MTR_5g015500 34.641 153 92 3 80 225 345 496 5.79e-18 82.4
MsG0180005125.01.T01 MTR_4g086760 36.129 155 80 7 88 224 17 170 8.12e-17 78.2
MsG0180005125.01.T01 MTR_4g086760 36.129 155 80 7 88 224 17 170 9.06e-17 78.2
MsG0180005125.01.T01 MTR_4g086760 36.129 155 80 7 88 224 17 170 9.17e-17 78.6
MsG0180005125.01.T01 MTR_7g110980 34.437 151 82 6 87 224 108 254 3.77e-16 75.5
MsG0180005125.01.T01 MTR_4g075290 35.220 159 77 6 82 219 11 164 5.30e-15 70.9
MsG0180005125.01.T01 MTR_1g117010 35.811 148 72 7 89 219 94 235 2.47e-14 70.5
MsG0180005125.01.T01 MTR_1g117010 35.811 148 72 7 89 219 94 235 2.47e-14 70.5
MsG0180005125.01.T01 MTR_8g079690 33.758 157 81 7 88 224 17 170 4.59e-14 70.9
MsG0180005125.01.T01 MTR_3g117750 35.897 156 66 7 89 219 26 172 6.39e-14 68.2
MsG0180005125.01.T01 MTR_3g463900 32.237 152 84 7 89 223 48 197 5.75e-13 65.9
MsG0180005125.01.T01 MTR_8g040180 33.333 156 87 7 85 224 28 182 9.52e-13 64.7
MsG0180005125.01.T01 MTR_2g023120 27.922 154 101 3 80 224 13 165 4.49e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005125.01.T01 AT3G66654 59.402 234 87 4 1 227 1 233 4.62e-91 268
MsG0180005125.01.T01 AT3G66654 59.402 234 87 4 1 227 1 233 4.62e-91 268
MsG0180005125.01.T01 AT3G66654 59.402 234 87 4 1 227 1 233 4.62e-91 268
MsG0180005125.01.T01 AT3G66654 59.402 234 87 4 1 227 1 233 4.62e-91 268
MsG0180005125.01.T01 AT3G66654 59.402 234 87 4 1 227 1 233 4.62e-91 268
MsG0180005125.01.T01 AT2G47320 53.913 230 102 3 1 228 1 228 2.30e-78 235
MsG0180005125.01.T01 AT3G44600 36.000 175 101 3 60 228 461 630 3.19e-27 109
MsG0180005125.01.T01 AT2G36130 31.333 150 97 2 79 222 9 158 2.65e-21 87.4
MsG0180005125.01.T01 AT1G01940 32.667 150 95 2 83 226 4 153 3.84e-19 81.6
MsG0180005125.01.T01 AT5G67530 33.766 154 94 4 80 226 344 496 1.92e-18 84.0
MsG0180005125.01.T01 AT5G13120 35.762 151 76 6 89 224 103 247 4.64e-16 75.1
MsG0180005125.01.T01 AT5G13120 35.762 151 76 6 89 224 107 251 5.00e-16 75.1
MsG0180005125.01.T01 AT2G16600 35.099 151 80 6 83 216 13 162 1.50e-15 72.4
MsG0180005125.01.T01 AT2G15790 35.484 155 81 7 88 224 17 170 2.82e-15 74.3
MsG0180005125.01.T01 AT4G34870 35.135 148 80 5 86 217 15 162 1.62e-14 69.3
MsG0180005125.01.T01 AT2G29960 33.775 151 77 7 87 223 44 185 4.48e-13 65.9
MsG0180005125.01.T01 AT4G33060 28.966 145 93 3 80 215 13 156 1.05e-12 67.0
MsG0180005125.01.T01 AT3G56070 31.034 145 70 7 89 210 18 155 3.94e-11 60.5
MsG0180005125.01.T01 AT3G56070 31.034 145 70 7 89 210 18 155 3.94e-11 60.5

Find 78 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTACAAAACTGGCCATTT+TGG 0.166485 1:-87349190 None:intergenic
TATGATAGGATTAGGTTAAA+TGG 0.203431 1:+87344771 MsG0180005125.01.T01:intron
TTGTAGGTTGAAAATAGTTT+TGG 0.284508 1:+87346272 MsG0180005125.01.T01:intron
TGATTTGTCTGCAGTCAAAA+AGG 0.285296 1:+87347797 MsG0180005125.01.T01:intron
TACACTCCTAAAATAACTAT+TGG 0.286009 1:+87348715 MsG0180005125.01.T01:CDS
AATGAGAAGCTTATTGTGTT+TGG 0.290264 1:+87348126 MsG0180005125.01.T01:CDS
AGTTTGCTTATAACCTGTTT+TGG 0.308387 1:+87348810 MsG0180005125.01.T01:three_prime_UTR
CTACGCTTTGATTCTTGTCT+TGG 0.316133 1:+87344876 MsG0180005125.01.T01:CDS
CATTTAGCAGTGAGCCAAAA+TGG 0.332046 1:+87349176 MsG0180005125.01.T01:three_prime_UTR
TATTAAGCACTATGTGATTC+AGG 0.332742 1:+87347850 MsG0180005125.01.T01:CDS
AAATATACAATCTTCTATTC+TGG 0.333789 1:+87348955 MsG0180005125.01.T01:three_prime_UTR
TTGACGAATTTATTGACTTA+TGG 0.343573 1:+87346540 MsG0180005125.01.T01:CDS
ATAAATTCGTCAACAGCTTC+AGG 0.351785 1:-87346530 None:intergenic
CATACAGACATTGGTCTAAC+AGG 0.351889 1:+87344920 MsG0180005125.01.T01:CDS
TTTCGTGTAGTTGGAGGCTT+TGG 0.353668 1:-87344220 None:intergenic
TCATCCCTGTACAAAAGATT+TGG 0.360099 1:-87348841 None:intergenic
TTTGTGTATGCTTGTAAGAT+TGG 0.373698 1:+87349042 MsG0180005125.01.T01:three_prime_UTR
TAAAGAGAATATTACAAAAC+TGG 0.381114 1:-87349199 None:intergenic
AATGAGAAATTTCGTGTAGT+TGG 0.381441 1:-87344229 None:intergenic
CAAGGGAGAGGATGTTGTTC+AGG 0.390816 1:+87348158 MsG0180005125.01.T01:CDS
AAAGAATAAGAAAACCTTGC+AGG 0.393868 1:-87347926 None:intergenic
GCAGGGGATGGTCAAGGAAC+AGG 0.397526 1:+87347872 MsG0180005125.01.T01:CDS
TAGGTCTTAAATACATCTAA+AGG 0.399050 1:+87346473 MsG0180005125.01.T01:intron
TTTGTTGGTGTGTTTGCCCT+TGG 0.409985 1:-87348061 None:intergenic
GCTTTGATTCTTGTCTTGGT+TGG 0.410038 1:+87344880 MsG0180005125.01.T01:CDS
ACACTCCTAAAATAACTATT+GGG 0.416681 1:+87348716 MsG0180005125.01.T01:CDS
ATAAGCTTCTCATTTAGATC+TGG 0.424089 1:-87348117 None:intergenic
TTTGGCCGGAGCACCAAAAC+AGG 0.432282 1:-87348823 None:intergenic
CAACATCAAGGCTCAAAAGC+TGG 0.462158 1:-87348896 None:intergenic
AAGGAACAGGAGCAGCTGAT+TGG 0.463623 1:+87347885 MsG0180005125.01.T01:CDS
TGACGACAATGTTGGAAAAC+TGG 0.466885 1:+87344196 None:intergenic
GAAAAGATCAAATCCTTTGT+TGG 0.478754 1:-87348076 None:intergenic
TTCTCATTTAGATCTGGAAT+CGG 0.478846 1:-87348111 None:intergenic
GAGAAATTTCGTGTAGTTGG+AGG 0.480954 1:-87344226 None:intergenic
AGGTCTTAAATACATCTAAA+GGG 0.486599 1:+87346474 MsG0180005125.01.T01:intron
CTCTGTTACAACAAAGCAAA+AGG 0.489993 1:+87344812 MsG0180005125.01.T01:CDS
GCAGCTGATTGGAACTTAAG+AGG 0.490971 1:+87347896 MsG0180005125.01.T01:CDS
AAAGGAAGAAGGGACCTTCT+CGG 0.493022 1:+87344830 MsG0180005125.01.T01:CDS
AAAAGCTGGATCGAAGCAAC+AGG 0.496153 1:-87348882 None:intergenic
TTAGTTATGAACAGTGATGC+AGG 0.496818 1:+87348932 MsG0180005125.01.T01:three_prime_UTR
AATTATAAAGTAACAGAAAG+AGG 0.499364 1:-87348978 None:intergenic
AGCAACAGGTGAACTTCTAA+AGG 0.515316 1:-87348868 None:intergenic
ACAACAAAGCAAAAGGAAGA+AGG 0.520495 1:+87344819 MsG0180005125.01.T01:CDS
GAAAGAGAGAAGTGAAGTAG+AGG 0.523624 1:-87344359 None:intergenic
AATGTCTGTATGTAGCCAAA+AGG 0.524194 1:-87344909 None:intergenic
AAGCACTATGTGATTCAGGC+AGG 0.525167 1:+87347854 MsG0180005125.01.T01:CDS
TCGAAGAAATCTGAGCTACC+TGG 0.535071 1:+87346299 MsG0180005125.01.T01:CDS
CTTTGTTGTAACAGAGCCTG+AGG 0.536853 1:-87344805 None:intergenic
AATGGCTAGGATCAAACCTC+AGG 0.537124 1:+87344789 MsG0180005125.01.T01:exon
AAACATGAAGCATTCATGCT+TGG 0.537837 1:+87348033 MsG0180005125.01.T01:CDS
ATGAAACTTACAGCATATCC+AGG 0.544358 1:-87346317 None:intergenic
ATTCCAGGAAATCGAAGAAG+TGG 0.550139 1:+87348678 MsG0180005125.01.T01:intron
GCACTATGTGATTCAGGCAG+GGG 0.552477 1:+87347856 MsG0180005125.01.T01:CDS
CCCTGTACAAAAGATTTGGC+CGG 0.555331 1:-87348837 None:intergenic
GTGTTTGGACAAGTCGTCAA+GGG 0.558972 1:+87348141 MsG0180005125.01.T01:CDS
TGGACAAGTCGTCAAGGGAG+AGG 0.559232 1:+87348146 MsG0180005125.01.T01:CDS
CTCTCAAACAGAAGGTCTGA+AGG 0.559435 1:+87348752 MsG0180005125.01.T01:CDS
GTAGAGGATGATGCAGTGAA+TGG 0.563983 1:-87344343 None:intergenic
TAGGATTAGGTTAAATGGCT+AGG 0.565103 1:+87344776 MsG0180005125.01.T01:intron
TCTCTCTTTCAACATCTCGC+AGG 0.565112 1:+87344372 MsG0180005125.01.T01:five_prime_UTR
TTAAAGTGTGACGACAATGT+TGG 0.571996 1:+87344188 None:intergenic
ATTCATGCTTGGAACATCCA+AGG 0.573047 1:+87348044 MsG0180005125.01.T01:CDS
ATTCAGGCAGGGGATGGTCA+AGG 0.591509 1:+87347866 MsG0180005125.01.T01:CDS
AACTAACTTGTCAGTCTCTG+AGG 0.593575 1:+87346025 MsG0180005125.01.T01:CDS
TATGTGATTCAGGCAGGGGA+TGG 0.596403 1:+87347860 MsG0180005125.01.T01:CDS
CAACAAAGCAAAAGGAAGAA+GGG 0.596730 1:+87344820 MsG0180005125.01.T01:CDS
TTCATGCTTGGAACATCCAA+GGG 0.601739 1:+87348045 MsG0180005125.01.T01:CDS
TATAATAGTAGAACTGTACA+AGG 0.602132 1:+87346499 MsG0180005125.01.T01:CDS
AGCACTATGTGATTCAGGCA+GGG 0.602224 1:+87347855 MsG0180005125.01.T01:CDS
GATGCAGTGAATGGATCGTA+CGG 0.604667 1:-87344334 None:intergenic
AAGGGCAAACACACCAACAA+AGG 0.607399 1:+87348063 MsG0180005125.01.T01:CDS
TGTGTTTGGACAAGTCGTCA+AGG 0.618995 1:+87348140 MsG0180005125.01.T01:CDS
TGATGTGACTCTCAAACAGA+AGG 0.625289 1:+87348744 MsG0180005125.01.T01:CDS
TAAGAGGAAAGCAACCTGCA+AGG 0.628079 1:+87347912 MsG0180005125.01.T01:CDS
CTAGCCGCGCTAATCCGAGA+AGG 0.659399 1:-87344844 None:intergenic
TAACTTGTCAGTCTCTGAGG+AGG 0.699675 1:+87346028 MsG0180005125.01.T01:CDS
GGGACCTTCTCGGATTAGCG+CGG 0.730312 1:+87344840 MsG0180005125.01.T01:CDS
GCAGTGAATGGATCGTACGG+CGG 0.736862 1:-87344331 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTTAATTGAAATTATTATA+TGG + Chr1:87346412-87346431 MsG0180005125.01.T01:intron 10.0%
!! ATATAATAATTTCAATTAAC+TGG - Chr1:87346413-87346432 None:intergenic 10.0%
!!! TTATATTGATTGAAAATAAA+TGG - Chr1:87348338-87348357 None:intergenic 10.0%
!! AAAAATGCTAAAAAATTCAA+TGG - Chr1:87345819-87345838 None:intergenic 15.0%
!! AATTTCAAACTTTATGTTAA+TGG + Chr1:87344602-87344621 MsG0180005125.01.T01:intron 15.0%
!! ATTGAAAATAAATGGAAAAA+TGG - Chr1:87348330-87348349 None:intergenic 15.0%
!! ATTTCAAACTTTATGTTAAT+GGG + Chr1:87344603-87344622 MsG0180005125.01.T01:intron 15.0%
!! GGAGTAAAAAAAAAAAAAAA+AGG - Chr1:87346078-87346097 None:intergenic 15.0%
!! TAATTAATAGAATCCAAAAA+TGG - Chr1:87344438-87344457 None:intergenic 15.0%
!! TATCACTTTATATGTAATTA+TGG + Chr1:87348400-87348419 MsG0180005125.01.T01:intron 15.0%
!! TGATCAAAAAAATAAAGATT+TGG + Chr1:87344634-87344653 MsG0180005125.01.T01:intron 15.0%
!! TTTATGTTGGAAAATAAAAA+GGG + Chr1:87345493-87345512 MsG0180005125.01.T01:intron 15.0%
!!! AGAGAAAATATTTTTTATGT+TGG + Chr1:87345480-87345499 MsG0180005125.01.T01:intron 15.0%
!!! TCACATTTCTTTTTTTATTT+TGG + Chr1:87349070-87349089 MsG0180005125.01.T01:three_prime_UTR 15.0%
!!! TCTATTTTTCTCATATAAAT+AGG + Chr1:87345919-87345938 MsG0180005125.01.T01:intron 15.0%
!!! TTTTATGTTGGAAAATAAAA+AGG + Chr1:87345492-87345511 MsG0180005125.01.T01:intron 15.0%
!!! TTTTCAATCAATATAAATCA+AGG + Chr1:87348342-87348361 MsG0180005125.01.T01:intron 15.0%
!! AAATATACAATCTTCTATTC+TGG + Chr1:87348955-87348974 MsG0180005125.01.T01:three_prime_UTR 20.0%
!! AAGTTAATTAAGAACGAAAA+AGG - Chr1:87344484-87344503 None:intergenic 20.0%
!! AATAAAGATTTGGATGATAT+TGG + Chr1:87344644-87344663 MsG0180005125.01.T01:intron 20.0%
!! AATCAAGAGTTTCAATATTA+AGG + Chr1:87348630-87348649 MsG0180005125.01.T01:intron 20.0%
!! AATTATAAAGTAACAGAAAG+AGG - Chr1:87348981-87349000 None:intergenic 20.0%
!! ACCTATAATAATGAAGAAAT+AGG - Chr1:87346458-87346477 None:intergenic 20.0%
!! AGTGATAAATCAACAAAAAT+TGG - Chr1:87348387-87348406 None:intergenic 20.0%
!! ATATATTTCAGCTAAGATTA+TGG - Chr1:87346763-87346782 None:intergenic 20.0%
!! ATTTGTGCTATATATAAGAT+TGG - Chr1:87347276-87347295 None:intergenic 20.0%
!! CACCAAAAAAAAAAAAAAAG+AGG - Chr1:87346815-87346834 None:intergenic 20.0%
!! GCCAATTTATAAATAAAACA+CGG + Chr1:87345636-87345655 MsG0180005125.01.T01:intron 20.0%
!! TTCCATATTAAAAACTTTGT+TGG - Chr1:87346581-87346600 None:intergenic 20.0%
!! TTTGTATAAGTAAGAATACT+AGG + Chr1:87347250-87347269 MsG0180005125.01.T01:intron 20.0%
!!! AATTTTGACATCTGTATAAA+TGG + Chr1:87348485-87348504 MsG0180005125.01.T01:intron 20.0%
!!! ACCGTGTTTTATTTATAAAT+TGG - Chr1:87345640-87345659 None:intergenic 20.0%
!!! ATCTTAGCTGAAATATATTT+TGG + Chr1:87346765-87346784 MsG0180005125.01.T01:intron 20.0%
!!! ATTTTGGTTTATTAACTAAC+TGG + Chr1:87344743-87344762 MsG0180005125.01.T01:intron 20.0%
!!! CAGTTATATGATTTTAAAGA+AGG + Chr1:87345869-87345888 MsG0180005125.01.T01:intron 20.0%
!!! CTTTAAAATCATATAACTGA+TGG - Chr1:87345868-87345887 None:intergenic 20.0%
!!! GTCCTCTTTTTTTTTTTTTT+TGG + Chr1:87346810-87346829 MsG0180005125.01.T01:intron 20.0%
!!! TGAAATGCTTGATAATTTTT+GGG + Chr1:87345102-87345121 MsG0180005125.01.T01:intron 20.0%
!!! TTCATTTGATTTTTGAGAAA+GGG + Chr1:87349015-87349034 MsG0180005125.01.T01:three_prime_UTR 20.0%
!!! TTCCAACAAAGTTTTTAATA+TGG + Chr1:87346576-87346595 MsG0180005125.01.T01:intron 20.0%
!!! TTTCATTTGATTTTTGAGAA+AGG + Chr1:87349014-87349033 MsG0180005125.01.T01:three_prime_UTR 20.0%
!!! TTTTATTTATAAATTGGCCA+TGG - Chr1:87345634-87345653 None:intergenic 20.0%
!!! TTTTGATTCAGTAGAATTTT+TGG + Chr1:87344707-87344726 MsG0180005125.01.T01:intron 20.0%
!!! TTTTGGTTTATTAACTAACT+GGG + Chr1:87344744-87344763 MsG0180005125.01.T01:intron 20.0%
! AAAAGCAAAAAACAACATCA+AGG - Chr1:87348911-87348930 None:intergenic 25.0%
! AAAGTAAGAAATGAATGGTT+AGG - Chr1:87345975-87345994 None:intergenic 25.0%
! AAGATGTATAAACTGTTACA+CGG - Chr1:87347392-87347411 None:intergenic 25.0%
! AAGCATCATGATGATTATAA+TGG - Chr1:87344684-87344703 None:intergenic 25.0%
! AAGTTAAGATCCAACAAATT+GGG - Chr1:87344543-87344562 None:intergenic 25.0%
! AATTATGCAAAAAACCTTCA+TGG - Chr1:87348281-87348300 None:intergenic 25.0%
! ACACTCCTAAAATAACTATT+GGG + Chr1:87348716-87348735 MsG0180005125.01.T01:CDS 25.0%
! ACAGATGTCAAAATTAGTAT+GGG - Chr1:87348480-87348499 None:intergenic 25.0%
! AGAATCCAAAAATGGAATAA+AGG - Chr1:87344430-87344449 None:intergenic 25.0%
! AGGTCTTAAATACATCTAAA+GGG + Chr1:87346474-87346493 MsG0180005125.01.T01:intron 25.0%
! AGTAGTCTGTTCATTATAAA+TGG + Chr1:87347725-87347744 MsG0180005125.01.T01:intron 25.0%
! AGTGATAGAGAGATAATATA+GGG + Chr1:87345431-87345450 MsG0180005125.01.T01:intron 25.0%
! ATATTACATAACACTATTCC+AGG + Chr1:87348663-87348682 MsG0180005125.01.T01:intron 25.0%
! CAGTTAAAGTAAGAAATGAA+TGG - Chr1:87345980-87345999 None:intergenic 25.0%
! GTAGTCTGTTCATTATAAAT+GGG + Chr1:87347726-87347745 MsG0180005125.01.T01:intron 25.0%
! TAAGTTAAGATCCAACAAAT+TGG - Chr1:87344544-87344563 None:intergenic 25.0%
! TACACTCCTAAAATAACTAT+TGG + Chr1:87348715-87348734 MsG0180005125.01.T01:CDS 25.0%
! TACAGATGTCAAAATTAGTA+TGG - Chr1:87348481-87348500 None:intergenic 25.0%
! TAGAAAATTATACAACTCAC+TGG - Chr1:87347982-87348001 None:intergenic 25.0%
! TAGGTCTTAAATACATCTAA+AGG + Chr1:87346473-87346492 MsG0180005125.01.T01:intron 25.0%
! TATAATAGTAGAACTGTACA+AGG + Chr1:87346499-87346518 MsG0180005125.01.T01:CDS 25.0%
! TATGATAGGATTAGGTTAAA+TGG + Chr1:87344771-87344790 MsG0180005125.01.T01:intron 25.0%
! TATGATGTGAAATGTTGTTA+TGG - Chr1:87346863-87346882 None:intergenic 25.0%
! TATTTGTGTCTGAGAAATAA+TGG + Chr1:87348582-87348601 MsG0180005125.01.T01:intron 25.0%
!! AAGTGCTGTAAATATTACTT+GGG - Chr1:87346728-87346747 None:intergenic 25.0%
!! ACAAATTTGTACTTTTGATC+TGG + Chr1:87347424-87347443 MsG0180005125.01.T01:intron 25.0%
!! ATATTCGATTTTCTGTATTC+TGG + Chr1:87345525-87345544 MsG0180005125.01.T01:intron 25.0%
!! CAAAACCTTTATTCCATTTT+TGG + Chr1:87344422-87344441 MsG0180005125.01.T01:intron 25.0%
!! GCCTATTTCTTCATTATTAT+AGG + Chr1:87346454-87346473 MsG0180005125.01.T01:intron 25.0%
!! TCATATCTTGTTTCTTTGTT+AGG + Chr1:87346878-87346897 MsG0180005125.01.T01:intron 25.0%
!! TGGAATTTTATCTTATTACC+TGG + Chr1:87346432-87346451 MsG0180005125.01.T01:intron 25.0%
!! TTCTTACTTTAACTGTTTTC+AGG + Chr1:87345985-87346004 MsG0180005125.01.T01:intron 25.0%
!!! AAAGTGCTGTAAATATTACT+TGG - Chr1:87346729-87346748 None:intergenic 25.0%
!!! AGTATCCCAATAGTTATTTT+AGG - Chr1:87348724-87348743 None:intergenic 25.0%
!!! ATTTTAAAGAAGGCTGTTAT+TGG + Chr1:87345879-87345898 MsG0180005125.01.T01:intron 25.0%
!!! CTGAAATGCTTGATAATTTT+TGG + Chr1:87345101-87345120 MsG0180005125.01.T01:intron 25.0%
!!! TAAATTGAGCTTTATTGCTT+TGG + Chr1:87345058-87345077 MsG0180005125.01.T01:intron 25.0%
!!! TCATTTGATTTTTGAGAAAG+GGG + Chr1:87349016-87349035 MsG0180005125.01.T01:three_prime_UTR 25.0%
!!! TGTAGGTTGAAAATAGTTTT+GGG + Chr1:87346273-87346292 MsG0180005125.01.T01:intron 25.0%
!!! TTGACGAATTTATTGACTTA+TGG + Chr1:87346540-87346559 MsG0180005125.01.T01:CDS 25.0%
!!! TTGTAGGTTGAAAATAGTTT+TGG + Chr1:87346272-87346291 MsG0180005125.01.T01:intron 25.0%
!!! TTTGTTTTGCTAAAAAACAG+AGG - Chr1:87345687-87345706 None:intergenic 25.0%
AAAAACCTTCATGGCTAAAA+CGG - Chr1:87348272-87348291 None:intergenic 30.0%
AAAAGGAGTAACAAAAGGAA+AGG - Chr1:87348242-87348261 None:intergenic 30.0%
AAAGAATAAGAAAACCTTGC+AGG - Chr1:87347929-87347948 None:intergenic 30.0%
AAAGGAGTAACAAAAGGAAA+GGG - Chr1:87348241-87348260 None:intergenic 30.0%
AAGAAATGAATGGTTAGGTA+AGG - Chr1:87345970-87345989 None:intergenic 30.0%
AATGAGAAATTTCGTGTAGT+TGG - Chr1:87344232-87344251 None:intergenic 30.0%
AATGAGAAGCTTATTGTGTT+TGG + Chr1:87348126-87348145 MsG0180005125.01.T01:CDS 30.0%
ACATTTCTGATTTCGCTTAT+AGG - Chr1:87347324-87347343 None:intergenic 30.0%
ACTAACTGGGAATTTATGAT+AGG + Chr1:87344757-87344776 MsG0180005125.01.T01:intron 30.0%
AGATAACATGAAACTACAGA+AGG - Chr1:87346106-87346125 None:intergenic 30.0%
AGGATAAAAGGAGTAACAAA+AGG - Chr1:87348247-87348266 None:intergenic 30.0%
AGTTAAGATCCAACAAATTG+GGG - Chr1:87344542-87344561 None:intergenic 30.0%
AGTTGTATCCAGTAAGATTA+GGG - Chr1:87344517-87344536 None:intergenic 30.0%
ATAACTGACATTCAAACAGT+TGG - Chr1:87348556-87348575 None:intergenic 30.0%
ATAAGCTTCTCATTTAGATC+TGG - Chr1:87348120-87348139 None:intergenic 30.0%
ATAGAAGGCCTTTAGATAAA+AGG - Chr1:87346153-87346172 None:intergenic 30.0%
ATCTCAATCAAGTATAGATG+TGG - Chr1:87347228-87347247 None:intergenic 30.0%
CAGATGTCAAAATTAGTATG+GGG - Chr1:87348479-87348498 None:intergenic 30.0%
GAAAAGATCAAATCCTTTGT+TGG - Chr1:87348079-87348098 None:intergenic 30.0%
GAAAATGAATTATAGCAGTG+TGG - Chr1:87346346-87346365 None:intergenic 30.0%
GAGTGATAGAGAGATAATAT+AGG + Chr1:87345430-87345449 MsG0180005125.01.T01:intron 30.0%
GATAACATGAAACTACAGAA+GGG - Chr1:87346105-87346124 None:intergenic 30.0%
GCAAATTTCCTTTGTCATAT+AGG + Chr1:87347149-87347168 MsG0180005125.01.T01:intron 30.0%
GTAGAAGTTCAATATTTGCT+AGG + Chr1:87346691-87346710 MsG0180005125.01.T01:intron 30.0%
GTGAAATGTTGTTATGGATA+TGG - Chr1:87346857-87346876 None:intergenic 30.0%
TAAATTGATGCCAAAAAACG+TGG - Chr1:87347702-87347721 None:intergenic 30.0%
TAATAATGAAGAAATAGGCC+AGG - Chr1:87346453-87346472 None:intergenic 30.0%
TAGAAGGCCTTTAGATAAAA+GGG - Chr1:87346152-87346171 None:intergenic 30.0%
TATCAGATATATGTAGAGCT+TGG + Chr1:87346969-87346988 MsG0180005125.01.T01:intron 30.0%
TATTAAGCACTATGTGATTC+AGG + Chr1:87347850-87347869 MsG0180005125.01.T01:CDS 30.0%
TCAAACACACACATAATAGA+AGG - Chr1:87346168-87346187 None:intergenic 30.0%
TCAGCTAAGATTATGGAAAA+AGG - Chr1:87346756-87346775 None:intergenic 30.0%
TGAGAGAGATCAATTGATAT+AGG - Chr1:87345195-87345214 None:intergenic 30.0%
TGGGAATTTATGATAGGATT+AGG + Chr1:87344763-87344782 MsG0180005125.01.T01:intron 30.0%
TTAATATGGAAGCTGCTTAA+TGG + Chr1:87346590-87346609 MsG0180005125.01.T01:intron 30.0%
TTAGTGTGAGAAATGATACA+CGG + Chr1:87344989-87345008 MsG0180005125.01.T01:intron 30.0%
TTTGTGTATGCTTGTAAGAT+TGG + Chr1:87349042-87349061 MsG0180005125.01.T01:three_prime_UTR 30.0%
! AAGTTGTTATTCGTATCAAG+CGG - Chr1:87347636-87347655 None:intergenic 30.0%
! AATTTGTACTTTTGATCTGG+AGG + Chr1:87347427-87347446 MsG0180005125.01.T01:intron 30.0%
! AGTTAATGCAGCAATTTTCA+AGG - Chr1:87347117-87347136 None:intergenic 30.0%
! ATCTTGTTTCTTTGTTAGGT+TGG + Chr1:87346882-87346901 MsG0180005125.01.T01:intron 30.0%
! GATAAAAGGGAGTATACATT+AGG - Chr1:87346139-87346158 None:intergenic 30.0%
! GCAAGGTTTTCTTATTCTTT+TGG + Chr1:87347929-87347948 MsG0180005125.01.T01:intron 30.0%
! GTATACTCCCTTTTATCTAA+AGG + Chr1:87346142-87346161 MsG0180005125.01.T01:intron 30.0%
! TTCTCATTTAGATCTGGAAT+CGG - Chr1:87348114-87348133 None:intergenic 30.0%
! TTGCATAATTTTTCATGTGC+TGG + Chr1:87348291-87348310 MsG0180005125.01.T01:intron 30.0%
! TTTTCGAATCTAGAAACTCA+TGG - Chr1:87344584-87344603 None:intergenic 30.0%
!! AATCGTATTTTGTTGGCTAA+AGG + Chr1:87345157-87345176 MsG0180005125.01.T01:intron 30.0%
!! AGTTTGCTTATAACCTGTTT+TGG + Chr1:87348810-87348829 MsG0180005125.01.T01:three_prime_UTR 30.0%
!! ATTTGATTTTTGAGAAAGGG+GGG + Chr1:87349018-87349037 MsG0180005125.01.T01:three_prime_UTR 30.0%
!! CATTTGATTTTTGAGAAAGG+GGG + Chr1:87349017-87349036 MsG0180005125.01.T01:three_prime_UTR 30.0%
!! CTCAGACAATTTACTTTTGT+AGG + Chr1:87346256-87346275 MsG0180005125.01.T01:intron 30.0%
!! GTAGGTTGAAAATAGTTTTG+GGG + Chr1:87346274-87346293 MsG0180005125.01.T01:intron 30.0%
!! GTTATTTTGTGATAGACAAC+AGG + Chr1:87346669-87346688 MsG0180005125.01.T01:intron 30.0%
!! GTTTGGTAATACAGCTTTTT+GGG + Chr1:87347660-87347679 MsG0180005125.01.T01:intron 30.0%
!! TGTCTGAAATCGTATTTTGT+TGG + Chr1:87345150-87345169 MsG0180005125.01.T01:intron 30.0%
!! TGTTTGGTAATACAGCTTTT+TGG + Chr1:87347659-87347678 MsG0180005125.01.T01:intron 30.0%
AATGTCTGTATGTAGCCAAA+AGG - Chr1:87344912-87344931 None:intergenic 35.0%
ACAACAAAGCAAAAGGAAGA+AGG + Chr1:87344819-87344838 MsG0180005125.01.T01:CDS 35.0%
AGACAAATCATAGGTTAGGT+TGG - Chr1:87347787-87347806 None:intergenic 35.0%
ATAAATTCGTCAACAGCTTC+AGG - Chr1:87346533-87346552 None:intergenic 35.0%
ATAATCTGCTAGTGTTTGTG+TGG - Chr1:87347068-87347087 None:intergenic 35.0%
ATGAAACTTACAGCATATCC+AGG - Chr1:87346320-87346339 None:intergenic 35.0%
ATGCTATTGCTATAGGATAG+AGG + Chr1:87345125-87345144 MsG0180005125.01.T01:intron 35.0%
ATGTTGTTATGGATATGGAG+AGG - Chr1:87346852-87346871 None:intergenic 35.0%
ATTCGACACCTATATGACAA+AGG - Chr1:87347160-87347179 None:intergenic 35.0%
CAACAAAGCAAAAGGAAGAA+GGG + Chr1:87344820-87344839 MsG0180005125.01.T01:CDS 35.0%
CACTAACATAGCAATTCTAC+TGG - Chr1:87347484-87347503 None:intergenic 35.0%
CAGTTGTATCCAGTAAGATT+AGG - Chr1:87344518-87344537 None:intergenic 35.0%
CGAATAACAACTTCTGTGTT+TGG + Chr1:87347643-87347662 MsG0180005125.01.T01:intron 35.0%
CTCTGTTACAACAAAGCAAA+AGG + Chr1:87344812-87344831 MsG0180005125.01.T01:CDS 35.0%
GAATGCTTCATGTTTCATAC+TGG - Chr1:87348028-87348047 None:intergenic 35.0%
GACAAAAACTTGTCTCATCA+TGG + Chr1:87345547-87345566 MsG0180005125.01.T01:intron 35.0%
GAGTACTAGGATTATTAGTG+TGG + Chr1:87347187-87347206 MsG0180005125.01.T01:intron 35.0%
GATTTGTCTGCAGTCAAAAA+GGG + Chr1:87347798-87347817 MsG0180005125.01.T01:intron 35.0%
GCTAAAACGGAAAGGATAAA+AGG - Chr1:87348259-87348278 None:intergenic 35.0%
TAAAAAACAGAGGACTGTAC+TGG - Chr1:87345677-87345696 None:intergenic 35.0%
TAGGATTAGGTTAAATGGCT+AGG + Chr1:87344776-87344795 MsG0180005125.01.T01:intron 35.0%
TCATCCCTGTACAAAAGATT+TGG - Chr1:87348844-87348863 None:intergenic 35.0%
TCTTTATGCCCTAATCTTAC+TGG + Chr1:87344506-87344525 MsG0180005125.01.T01:intron 35.0%
TGGTTAACTGGACATGATAT+AGG + Chr1:87347037-87347056 MsG0180005125.01.T01:intron 35.0%
TTAGTGAGGGACAAGAATTT+CGG + Chr1:87345571-87345590 MsG0180005125.01.T01:intron 35.0%
TTAGTTATGAACAGTGATGC+AGG + Chr1:87348932-87348951 MsG0180005125.01.T01:three_prime_UTR 35.0%
TTTGACTGCAGACAAATCAT+AGG - Chr1:87347796-87347815 None:intergenic 35.0%
! AAACATGAAGCATTCATGCT+TGG + Chr1:87348033-87348052 MsG0180005125.01.T01:CDS 35.0%
! ACTTTGGTTTACTGCACTTA+CGG + Chr1:87347452-87347471 MsG0180005125.01.T01:intron 35.0%
! AGCATCGAGCTAATATCTAT+GGG - Chr1:87346995-87347014 None:intergenic 35.0%
! CTTGGTTGGATTTTTCCTTT+TGG + Chr1:87344894-87344913 MsG0180005125.01.T01:CDS 35.0%
! TGATTTGTCTGCAGTCAAAA+AGG + Chr1:87347797-87347816 MsG0180005125.01.T01:intron 35.0%
! TTTGGTTTATGCTCTAGTTC+TGG + Chr1:87345735-87345754 MsG0180005125.01.T01:intron 35.0%
! TTTTGATCTGGAGGTTACTT+TGG + Chr1:87347436-87347455 MsG0180005125.01.T01:intron 35.0%
!! AAGCATCGAGCTAATATCTA+TGG - Chr1:87346996-87347015 None:intergenic 35.0%
!! TGGTTTGTGACTCTTGATTT+TGG + Chr1:87344727-87344746 MsG0180005125.01.T01:intron 35.0%
!! TGTCATATAGGTGTCGAATT+CGG + Chr1:87347161-87347180 MsG0180005125.01.T01:intron 35.0%
!! TTTTGGCTACATACAGACAT+TGG + Chr1:87344911-87344930 MsG0180005125.01.T01:CDS 35.0%
!!! GTAAGTACTCCTGTCTTTTT+TGG + Chr1:87345263-87345282 MsG0180005125.01.T01:intron 35.0%
!!! TGGTTTTTTACAGTCAATCC+TGG + Chr1:87347949-87347968 MsG0180005125.01.T01:intron 35.0%
!!! TTTTGGGATGCTATTGCTAT+AGG + Chr1:87345118-87345137 MsG0180005125.01.T01:intron 35.0%
AGCAACAGGTGAACTTCTAA+AGG - Chr1:87348871-87348890 None:intergenic 40.0%
ATGGAACTAGACAAAACAGG+CGG - Chr1:87345615-87345634 None:intergenic 40.0%
ATGGAAGCTGCTTAATGGTT+TGG + Chr1:87346595-87346614 MsG0180005125.01.T01:intron 40.0%
ATTCATGCTTGGAACATCCA+AGG + Chr1:87348044-87348063 MsG0180005125.01.T01:CDS 40.0%
ATTCCAGGAAATCGAAGAAG+TGG + Chr1:87348678-87348697 MsG0180005125.01.T01:intron 40.0%
CAAGTATAGATGTGGTACAG+CGG - Chr1:87347220-87347239 None:intergenic 40.0%
CATTTAGCAGTGAGCCAAAA+TGG + Chr1:87349176-87349195 MsG0180005125.01.T01:three_prime_UTR 40.0%
CTACGCTTTGATTCTTGTCT+TGG + Chr1:87344876-87344895 MsG0180005125.01.T01:CDS 40.0%
CTGCAGACAAATCATAGGTT+AGG - Chr1:87347791-87347810 None:intergenic 40.0%
GAAAGAGAGAAGTGAAGTAG+AGG - Chr1:87344362-87344381 None:intergenic 40.0%
GAGAAATTTCGTGTAGTTGG+AGG - Chr1:87344229-87344248 None:intergenic 40.0%
GCTTTGATTCTTGTCTTGGT+TGG + Chr1:87344880-87344899 MsG0180005125.01.T01:CDS 40.0%
GTCTCATCATGGTTTAGTGA+GGG + Chr1:87345558-87345577 MsG0180005125.01.T01:intron 40.0%
GTGAATCAAACGCTCTCTAA+TGG - Chr1:87345297-87345316 None:intergenic 40.0%
GTGACATCAGAACAAAGCTA+AGG - Chr1:87345715-87345734 None:intergenic 40.0%
GTTCTACCACCAAAAAAGAC+AGG - Chr1:87345275-87345294 None:intergenic 40.0%
TACAACTGTCCCCAATTTGT+TGG + Chr1:87344530-87344549 MsG0180005125.01.T01:intron 40.0%
TATCCACTTCTTCGATTTCC+TGG - Chr1:87348684-87348703 None:intergenic 40.0%
TATTCGTATCAAGCGGTTGT+TGG - Chr1:87347629-87347648 None:intergenic 40.0%
TGATGTGACTCTCAAACAGA+AGG + Chr1:87348744-87348763 MsG0180005125.01.T01:CDS 40.0%
TGGAAGCTGCTTAATGGTTT+GGG + Chr1:87346596-87346615 MsG0180005125.01.T01:intron 40.0%
TGGAATAGTGCATGGTTAAC+TGG + Chr1:87347025-87347044 MsG0180005125.01.T01:intron 40.0%
TGTCTCATCATGGTTTAGTG+AGG + Chr1:87345557-87345576 MsG0180005125.01.T01:intron 40.0%
TTCATGCTTGGAACATCCAA+GGG + Chr1:87348045-87348064 MsG0180005125.01.T01:CDS 40.0%
TTGAGGTGGTAGAACCTTTA+GGG + Chr1:87345220-87345239 MsG0180005125.01.T01:intron 40.0%
TTGTCATGTCTGCAATTGTC+TGG + Chr1:87348204-87348223 MsG0180005125.01.T01:intron 40.0%
! AAAGGGAGTATACATTAGGC+AGG - Chr1:87346135-87346154 None:intergenic 40.0%
! AACTAACTTGTCAGTCTCTG+AGG + Chr1:87346025-87346044 MsG0180005125.01.T01:CDS 40.0%
! CATACAGACATTGGTCTAAC+AGG + Chr1:87344920-87344939 MsG0180005125.01.T01:CDS 40.0%
! GCTTTGTTCTGATGTCACTT+TGG + Chr1:87345717-87345736 MsG0180005125.01.T01:intron 40.0%
! GGTTTGGTTAGACTTGATGT+TGG + Chr1:87346617-87346636 MsG0180005125.01.T01:intron 40.0%
! TCGAATTCGGTTAGAGTACT+AGG + Chr1:87347174-87347193 MsG0180005125.01.T01:intron 40.0%
! TGATCTCTCTCAGTCTTTTG+AGG + Chr1:87345203-87345222 MsG0180005125.01.T01:intron 40.0%
! TGGAGTTGCTATTCTGTGAT+TGG + Chr1:87348505-87348524 MsG0180005125.01.T01:intron 40.0%
! TTTGAGGTGGTAGAACCTTT+AGG + Chr1:87345219-87345238 MsG0180005125.01.T01:intron 40.0%
!! AGTCAAAAAGGGCACTTCAA+AGG + Chr1:87347809-87347828 MsG0180005125.01.T01:intron 40.0%
!! AGTTTCTCTGGAATAGTGCA+TGG + Chr1:87347017-87347036 MsG0180005125.01.T01:intron 40.0%
!! CTGTGATTGGTTGACTTGTT+CGG + Chr1:87348518-87348537 MsG0180005125.01.T01:intron 40.0%
!! GGCTGTTATTGGTTTGTAAC+AGG + Chr1:87345890-87345909 MsG0180005125.01.T01:intron 40.0%
!! GTCAAAAAGGGCACTTCAAA+GGG + Chr1:87347810-87347829 MsG0180005125.01.T01:intron 40.0%
!! TGGTAATACAGCTTTTTGGG+TGG + Chr1:87347663-87347682 MsG0180005125.01.T01:intron 40.0%
!! TGTGATTGGTTGACTTGTTC+GGG + Chr1:87348519-87348538 MsG0180005125.01.T01:intron 40.0%
!! TTTCATGTGCTGGCTGTTTA+TGG + Chr1:87348301-87348320 MsG0180005125.01.T01:intron 40.0%
!!! AGTACTCCTGTCTTTTTTGG+TGG + Chr1:87345266-87345285 MsG0180005125.01.T01:intron 40.0%
!!! CATTTTGGCTCACTGCTAAA+TGG - Chr1:87349178-87349197 None:intergenic 40.0%
!!! GATGTTTCTGCCACGTTTTT+TGG + Chr1:87347689-87347708 MsG0180005125.01.T01:intron 40.0%
!!! TATAACCTGTTTTGGTGCTC+CGG + Chr1:87348818-87348837 MsG0180005125.01.T01:three_prime_UTR 40.0%
AAAAGCTGGATCGAAGCAAC+AGG - Chr1:87348885-87348904 None:intergenic 45.0%
AAAGGAAGAAGGGACCTTCT+CGG + Chr1:87344830-87344849 MsG0180005125.01.T01:CDS 45.0%
AAGCACTATGTGATTCAGGC+AGG + Chr1:87347854-87347873 MsG0180005125.01.T01:CDS 45.0%
AAGGGCAAACACACCAACAA+AGG + Chr1:87348063-87348082 MsG0180005125.01.T01:CDS 45.0%
AATGGCTAGGATCAAACCTC+AGG + Chr1:87344789-87344808 MsG0180005125.01.T01:exon 45.0%
AGCACTATGTGATTCAGGCA+GGG + Chr1:87347855-87347874 MsG0180005125.01.T01:CDS 45.0%
ATGAAACTACAGAAGGGCTG+AGG - Chr1:87346099-87346118 None:intergenic 45.0%
CAACATCAAGGCTCAAAAGC+TGG - Chr1:87348899-87348918 None:intergenic 45.0%
CAGAAAGTCCTCGTCTCAAT+GGG - Chr1:87346196-87346215 None:intergenic 45.0%
CCCTGTACAAAAGATTTGGC+CGG - Chr1:87348840-87348859 None:intergenic 45.0%
CCTGAAATAAACACACCCTC+TGG + Chr1:87347576-87347595 MsG0180005125.01.T01:intron 45.0%
CCTTCATGGCTAAAACGGAA+AGG - Chr1:87348267-87348286 None:intergenic 45.0%
CTCTCAAACAGAAGGTCTGA+AGG + Chr1:87348752-87348771 MsG0180005125.01.T01:CDS 45.0%
GATGCAGTGAATGGATCGTA+CGG - Chr1:87344337-87344356 None:intergenic 45.0%
GCAGCTGATTGGAACTTAAG+AGG + Chr1:87347896-87347915 MsG0180005125.01.T01:CDS 45.0%
GCCATGGAACTAGACAAAAC+AGG - Chr1:87345618-87345637 None:intergenic 45.0%
GTAGAGGATGATGCAGTGAA+TGG - Chr1:87344346-87344365 None:intergenic 45.0%
GTGAATCAAACGCTCCCTAA+AGG - Chr1:87345237-87345256 None:intergenic 45.0%
GTGTTTGGACAAGTCGTCAA+GGG + Chr1:87348141-87348160 MsG0180005125.01.T01:CDS 45.0%
TAAGAGGAAAGCAACCTGCA+AGG + Chr1:87347912-87347931 MsG0180005125.01.T01:CDS 45.0%
TCGAAGAAATCTGAGCTACC+TGG + Chr1:87346299-87346318 MsG0180005125.01.T01:CDS 45.0%
TCTCTCTTTCAACATCTCGC+AGG + Chr1:87344372-87344391 MsG0180005125.01.T01:five_prime_UTR 45.0%
TGTGTTTGGACAAGTCGTCA+AGG + Chr1:87348140-87348159 MsG0180005125.01.T01:CDS 45.0%
TTTCGTGTAGTTGGAGGCTT+TGG - Chr1:87344223-87344242 None:intergenic 45.0%
TTTGTTGGTGTGTTTGCCCT+TGG - Chr1:87348064-87348083 None:intergenic 45.0%
! CCAGAGGGTGTGTTTATTTC+AGG - Chr1:87347579-87347598 None:intergenic 45.0%
! CCGGCCAAATCTTTTGTACA+GGG + Chr1:87348837-87348856 MsG0180005125.01.T01:three_prime_UTR 45.0%
! CTTTGTTGTAACAGAGCCTG+AGG - Chr1:87344808-87344827 None:intergenic 45.0%
! GCTCGATGCTTTAGTTTCTC+TGG + Chr1:87347005-87347024 MsG0180005125.01.T01:intron 45.0%
! GCTGCTTAATGGTTTGGGTT+TGG + Chr1:87346601-87346620 MsG0180005125.01.T01:intron 45.0%
! TAACTTGTCAGTCTCTGAGG+AGG + Chr1:87346028-87346047 MsG0180005125.01.T01:CDS 45.0%
! TCCGGCCAAATCTTTTGTAC+AGG + Chr1:87348836-87348855 MsG0180005125.01.T01:three_prime_UTR 45.0%
! TGAGTTTTCCCATTGAGACG+AGG + Chr1:87346185-87346204 MsG0180005125.01.T01:intron 45.0%
!! CCTTTCCGTTTTAGCCATGA+AGG + Chr1:87348264-87348283 MsG0180005125.01.T01:intron 45.0%
!! GCCTGTTTTGTCTAGTTCCA+TGG + Chr1:87345614-87345633 MsG0180005125.01.T01:intron 45.0%
!! TCTCTCTCAGTCTTTTGAGG+TGG + Chr1:87345206-87345225 MsG0180005125.01.T01:intron 45.0%
!!! GCTCTAGTTCTGGCAGATTT+TGG + Chr1:87345745-87345764 MsG0180005125.01.T01:intron 45.0%
AAGGAACAGGAGCAGCTGAT+TGG + Chr1:87347885-87347904 MsG0180005125.01.T01:CDS 50.0%
ACTAGACAAAACAGGCGGCA+AGG - Chr1:87345610-87345629 None:intergenic 50.0%
CAACTCACTGGATCATCACC+AGG - Chr1:87347970-87347989 None:intergenic 50.0%
CAAGGGAGAGGATGTTGTTC+AGG + Chr1:87348158-87348177 MsG0180005125.01.T01:CDS 50.0%
CTAGACAAAACAGGCGGCAA+GGG - Chr1:87345609-87345628 None:intergenic 50.0%
GCACTATGTGATTCAGGCAG+GGG + Chr1:87347856-87347875 MsG0180005125.01.T01:CDS 50.0%
GCAGAAAGTCCTCGTCTCAA+TGG - Chr1:87346197-87346216 None:intergenic 50.0%
TATGTGATTCAGGCAGGGGA+TGG + Chr1:87347860-87347879 MsG0180005125.01.T01:CDS 50.0%
TGAGACGAGGACTTTCTGCA+AGG + Chr1:87346198-87346217 MsG0180005125.01.T01:intron 50.0%
ATTCAGGCAGGGGATGGTCA+AGG + Chr1:87347866-87347885 MsG0180005125.01.T01:CDS 55.0%
CAAAACAGGCGGCAAGGGAT+CGG - Chr1:87345604-87345623 None:intergenic 55.0%
CCCACAAACAGTTGCGCTTG+CGG - Chr1:87347605-87347624 None:intergenic 55.0%
CCGCAAGCGCAACTGTTTGT+GGG + Chr1:87347602-87347621 MsG0180005125.01.T01:intron 55.0%
CGCAAGCGCAACTGTTTGTG+GGG + Chr1:87347603-87347622 MsG0180005125.01.T01:intron 55.0%
GCAGTGAATGGATCGTACGG+CGG - Chr1:87344334-87344353 None:intergenic 55.0%
TCCGCAAGCGCAACTGTTTG+TGG + Chr1:87347601-87347620 MsG0180005125.01.T01:intron 55.0%
TGGACAAGTCGTCAAGGGAG+AGG + Chr1:87348146-87348165 MsG0180005125.01.T01:CDS 55.0%
! TTTGGCCGGAGCACCAAAAC+AGG - Chr1:87348826-87348845 None:intergenic 55.0%
CTAGCCGCGCTAATCCGAGA+AGG - Chr1:87344847-87344866 None:intergenic 60.0%
GCAGGGGATGGTCAAGGAAC+AGG + Chr1:87347872-87347891 MsG0180005125.01.T01:CDS 60.0%
TTGCGCTTGCGGACACCAGA+GGG - Chr1:87347594-87347613 None:intergenic 60.0%
!! GGGACCTTCTCGGATTAGCG+CGG + Chr1:87344840-87344859 MsG0180005125.01.T01:CDS 60.0%
GTTGCGCTTGCGGACACCAG+AGG - Chr1:87347595-87347614 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 87344198 87349206 87344198 ID=MsG0180005125.01;Name=MsG0180005125.01
Chr1 mRNA 87344198 87349206 87344198 ID=MsG0180005125.01.T01;Parent=MsG0180005125.01;Name=MsG0180005125.01.T01;_AED=0.38;_eAED=0.38;_QI=207|1|1|1|0.85|0.75|8|435|230
Chr1 exon 87344198 87344393 87344198 ID=MsG0180005125.01.T01:exon:16956;Parent=MsG0180005125.01.T01
Chr1 exon 87344779 87344941 87344779 ID=MsG0180005125.01.T01:exon:16957;Parent=MsG0180005125.01.T01
Chr1 exon 87346007 87346049 87346007 ID=MsG0180005125.01.T01:exon:16958;Parent=MsG0180005125.01.T01
Chr1 exon 87346278 87346328 87346278 ID=MsG0180005125.01.T01:exon:16959;Parent=MsG0180005125.01.T01
Chr1 exon 87346476 87346561 87346476 ID=MsG0180005125.01.T01:exon:16960;Parent=MsG0180005125.01.T01
Chr1 exon 87347811 87347933 87347811 ID=MsG0180005125.01.T01:exon:16961;Parent=MsG0180005125.01.T01
Chr1 exon 87348029 87348179 87348029 ID=MsG0180005125.01.T01:exon:16962;Parent=MsG0180005125.01.T01
Chr1 exon 87348685 87349206 87348685 ID=MsG0180005125.01.T01:exon:16963;Parent=MsG0180005125.01.T01
Chr1 five_prime_UTR 87344198 87344393 87344198 ID=MsG0180005125.01.T01:five_prime_utr;Parent=MsG0180005125.01.T01
Chr1 five_prime_UTR 87344779 87344789 87344779 ID=MsG0180005125.01.T01:five_prime_utr;Parent=MsG0180005125.01.T01
Chr1 CDS 87344790 87344941 87344790 ID=MsG0180005125.01.T01:cds;Parent=MsG0180005125.01.T01
Chr1 CDS 87346007 87346049 87346007 ID=MsG0180005125.01.T01:cds;Parent=MsG0180005125.01.T01
Chr1 CDS 87346278 87346328 87346278 ID=MsG0180005125.01.T01:cds;Parent=MsG0180005125.01.T01
Chr1 CDS 87346476 87346561 87346476 ID=MsG0180005125.01.T01:cds;Parent=MsG0180005125.01.T01
Chr1 CDS 87347811 87347933 87347811 ID=MsG0180005125.01.T01:cds;Parent=MsG0180005125.01.T01
Chr1 CDS 87348029 87348179 87348029 ID=MsG0180005125.01.T01:cds;Parent=MsG0180005125.01.T01
Chr1 CDS 87348685 87348771 87348685 ID=MsG0180005125.01.T01:cds;Parent=MsG0180005125.01.T01
Chr1 three_prime_UTR 87348772 87349206 87348772 ID=MsG0180005125.01.T01:three_prime_utr;Parent=MsG0180005125.01.T01
Gene Sequence

>MsG0180005125.01.T01

ATGGCTAGGATCAAACCTCAGGCTCTGTTACAACAAAGCAAAAGGAAGAAGGGACCTTCTCGGATTAGCGCGGCTAGTATTATATTCTACGCTTTGATTCTTGTCTTGGTTGGATTTTTCCTTTTGGCTACATACAGACATTGGTCTAACAGGTCAAGATTGCAATCAGAAACTAACTTGTCAGTCTCTGAGGAGGTTGAAAATAGTTTTGGGGACTCGAAGAAATCTGAGCTACCTGGATATGCTGTCTTAAATACATCTAAAGGGTCTATAATAGTAGAACTGTACAAGGAAAGTGCTCCTGAAGCTGTTGACGAATTTATTGACTTATGTCAAAAAGGGCACTTCAAAGGGATGCTTTTTCAGCGTGTTATTAAGCACTATGTGATTCAGGCAGGGGATGGTCAAGGAACAGGAGCAGCTGATTGGAACTTAAGAGGAAAGCAACCTGCAAGTATGAAACATGAAGCATTCATGCTTGGAACATCCAAGGGCAAACACACCAACAAAGGATTTGATCTTTTCATCACAACTGCACCGATTCCAGATCTAAATGAGAAGCTTATTGTGTTTGGACAAGTCGTCAAGGGAGAGGATGTTGTTCAGGAAATCGAAGAAGTGGATACAGATGAACATTACACTCCTAAAATAACTATTGGGATACTTGATGTGACTCTCAAACAGAAGGTCTGA

Protein sequence

>MsG0180005125.01.T01

MARIKPQALLQQSKRKKGPSRISAASIIFYALILVLVGFFLLATYRHWSNRSRLQSETNLSVSEEVENSFGDSKKSELPGYAVLNTSKGSIIVELYKESAPEAVDEFIDLCQKGHFKGMLFQRVIKHYVIQAGDGQGTGAADWNLRGKQPASMKHEAFMLGTSKGKHTNKGFDLFITTAPIPDLNEKLIVFGQVVKGEDVVQEIEEVDTDEHYTPKITIGILDVTLKQKV*