AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039950.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039950.01.T01 MTR_7g082140 80.476 210 5 2 13 213 31 213 4.86e-109 313
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039950.01.T01 AT1G67060 69.524 210 27 3 13 213 33 214 1.23e-91 268
MsG0780039950.01.T01 AT1G67060 77.027 148 24 2 75 213 1 147 2.11e-72 217
MsG0780039950.01.T01 AT1G67060 77.027 148 24 2 75 213 1 147 2.11e-72 217

Find 37 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGATCTTGGTTCATCATTT+TGG 0.061517 7:-71013478 MsG0780039950.01.T01:CDS
TCAAAACCTCAGAGAATTTC+TGG 0.140832 7:-71015131 MsG0780039950.01.T01:intron
CCTTGCCCTTGTAATGGTTT+TGG 0.181287 7:-71012726 MsG0780039950.01.T01:CDS
AACACAGTGATGAGCTTAAA+AGG 0.297704 7:+71015362 None:intergenic
CCAATAGGTGGAGGGAATTC+AGG 0.313772 7:-71014093 MsG0780039950.01.T01:intron
GAATGACATAGCGAAGGATA+TGG 0.348587 7:+71013077 None:intergenic
TGGTTGCTTTCTTGCTGCTC+TGG 0.389334 7:-71013402 MsG0780039950.01.T01:CDS
CAAAACCTCAGAGAATTTCT+GGG 0.412105 7:-71015130 MsG0780039950.01.T01:intron
AGACGCGTGGTGGCATATAC+TGG 0.420519 7:-71014043 MsG0780039950.01.T01:CDS
TACTGGTTGATCTTGCCTGC+TGG 0.424141 7:-71014026 MsG0780039950.01.T01:CDS
TCTGGTTATTGTGCTCTTTG+TGG 0.424444 7:-71013384 MsG0780039950.01.T01:CDS
GTCTGCCCTTGCCCTTGTAA+TGG 0.430059 7:-71012732 MsG0780039950.01.T01:CDS
CGCTATGTCATTCTCTTCAT+CGG 0.432806 7:-71013067 MsG0780039950.01.T01:intron
AACAGCAATAAGAGCCACTT+TGG 0.474675 7:+71015106 None:intergenic
CTTACTGCAAGGATTGCTGC+TGG 0.492007 7:-71013422 MsG0780039950.01.T01:CDS
CCCCACCCAAAACCATTACA+AGG 0.500731 7:+71012720 None:intergenic
ATTGCCTGTTTGCTCACTTG+TGG 0.516164 7:-71015317 MsG0780039950.01.T01:CDS
CTGTTTGCTCACTTGTGGCA+AGG 0.521314 7:-71015312 MsG0780039950.01.T01:intron
GGTTCATGCAAACGAGGGAG+GGG 0.535060 7:-71014072 MsG0780039950.01.T01:CDS
CTTGCCACAAGTGAGCAAAC+AGG 0.537453 7:+71015313 None:intergenic
CTACAAATATTCTTACTGCA+AGG 0.548085 7:-71013433 MsG0780039950.01.T01:CDS
AGGTTCATGCAAACGAGGGA+GGG 0.551598 7:-71014073 MsG0780039950.01.T01:CDS
GAAAATGCATTACATCCAGC+AGG 0.556016 7:+71014011 None:intergenic
CCAAAACCATTACAAGGGCA+AGG 0.586840 7:+71012726 None:intergenic
GAGAATTTCTGGGACCAAAG+TGG 0.592252 7:-71015120 MsG0780039950.01.T01:CDS
AGTTGCTAGTGAACAATGGT+TGG 0.599367 7:+71015063 None:intergenic
CAGGTTCATGCAAACGAGGG+AGG 0.605633 7:-71014074 MsG0780039950.01.T01:CDS
ACTAAGTTGCTAGTGAACAA+TGG 0.617282 7:+71015059 None:intergenic
GGGGTAACACAGACGCGTGG+TGG 0.619279 7:-71014053 MsG0780039950.01.T01:CDS
AATTCAGGTTCATGCAAACG+AGG 0.624880 7:-71014078 MsG0780039950.01.T01:CDS
GTTTGATGCCAATAGGTGGA+GGG 0.627009 7:-71014101 MsG0780039950.01.T01:intron
TGAAGAGAATGACATAGCGA+AGG 0.629946 7:+71013071 None:intergenic
CAAAACCATTACAAGGGCAA+GGG 0.650178 7:+71012727 None:intergenic
CCCACCCAAAACCATTACAA+GGG 0.672104 7:+71012721 None:intergenic
TGTGGTGATTACAGCTATGG+AGG 0.679407 7:-71015400 MsG0780039950.01.T01:intron
GGAGGGGTAACACAGACGCG+TGG 0.683153 7:-71014056 MsG0780039950.01.T01:CDS
ATTCAGGTTCATGCAAACGA+GGG 0.703449 7:-71014077 MsG0780039950.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATGATATTTTTTTTTTGA+AGG - Chr7:71013034-71013053 MsG0780039950.01.T01:intron 10.0%
!!! ATTTTACAATTAAAATAATC+AGG + Chr7:71016238-71016257 None:intergenic 10.0%
!!! TGAAGTTTTATTTTTTTTAA+TGG - Chr7:71015834-71015853 MsG0780039950.01.T01:intron 10.0%
!!! TTTTCAGTTTTAATAAAATA+AGG + Chr7:71015953-71015972 None:intergenic 10.0%
!! AAAAAATTGCTTATAAGAAA+AGG + Chr7:71013602-71013621 None:intergenic 15.0%
!! ATATTTATAAACCTCATTAT+TGG + Chr7:71016522-71016541 None:intergenic 15.0%
!! ATTTAGTATTTATTCTGATT+AGG + Chr7:71014452-71014471 None:intergenic 15.0%
!! TAAATTGTGTTAATTGAAAA+AGG + Chr7:71013224-71013243 None:intergenic 15.0%
!!! AATTAAAATTTGTTTGAGAT+TGG - Chr7:71014247-71014266 MsG0780039950.01.T01:intron 15.0%
!!! CTCTATTGATTTTTTTTTTT+TGG - Chr7:71014061-71014080 MsG0780039950.01.T01:CDS 15.0%
!!! CTGTATTTTTAATTAATTTG+TGG - Chr7:71015634-71015653 MsG0780039950.01.T01:intron 15.0%
!!! TTTAAAATTGTGTTTCTAAA+TGG - Chr7:71013073-71013092 MsG0780039950.01.T01:CDS 15.0%
!! AATTATATGAACAGATAAAG+GGG - Chr7:71015477-71015496 MsG0780039950.01.T01:intron 20.0%
!! AATTCATCAAATGATATAAG+TGG + Chr7:71017314-71017333 None:intergenic 20.0%
!! AATTCTTATACTGTATGAAT+TGG + Chr7:71013524-71013543 None:intergenic 20.0%
!! AGAATTTCACACAAATTAAT+TGG + Chr7:71013410-71013429 None:intergenic 20.0%
!! ATAGTATATGATAAAGACTT+AGG + Chr7:71014551-71014570 None:intergenic 20.0%
!! ATTCTTATACTGTATGAATT+GGG + Chr7:71013523-71013542 None:intergenic 20.0%
!! CAATAAGTAGTTTCAATATA+TGG + Chr7:71013146-71013165 None:intergenic 20.0%
!! GAAAAAAAAGCTATATAAAG+AGG + Chr7:71012987-71013006 None:intergenic 20.0%
!! GAATTATATGAACAGATAAA+GGG - Chr7:71015476-71015495 MsG0780039950.01.T01:intron 20.0%
!! TGAAAATGAAACGTATAAAA+TGG + Chr7:71017267-71017286 None:intergenic 20.0%
!! TGAATTATATGAACAGATAA+AGG - Chr7:71015475-71015494 MsG0780039950.01.T01:intron 20.0%
!!! AGTATAAGAATTTTTTTGAC+TGG - Chr7:71013532-71013551 MsG0780039950.01.T01:intron 20.0%
!!! ATCATTTGATGAATTTTGTA+TGG - Chr7:71017319-71017338 MsG0780039950.01.T01:intron 20.0%
!!! ATTTTGTTGCATTTTATACA+CGG - Chr7:71015146-71015165 MsG0780039950.01.T01:intron 20.0%
!!! CAATTGAATTTTTCAAAACA+AGG - Chr7:71014519-71014538 MsG0780039950.01.T01:intron 20.0%
!!! CTAATTATGATTTGATTTTC+AGG - Chr7:71017200-71017219 MsG0780039950.01.T01:intron 20.0%
!!! GATGTAGTTTTTTTGTTTTT+GGG - Chr7:71014661-71014680 MsG0780039950.01.T01:intron 20.0%
!!! TACAATCTTCTGAAATAAAA+AGG - Chr7:71016935-71016954 MsG0780039950.01.T01:intron 20.0%
!!! TATAATTCATTTTGATGTCA+AGG + Chr7:71015464-71015483 None:intergenic 20.0%
!!! TATACGTTTCATTTTCAATT+TGG - Chr7:71017270-71017289 MsG0780039950.01.T01:intron 20.0%
!!! TGATGTAGTTTTTTTGTTTT+TGG - Chr7:71014660-71014679 MsG0780039950.01.T01:intron 20.0%
!!! TGTTTTTACATATTGAAAGA+AGG + Chr7:71012941-71012960 None:intergenic 20.0%
!!! TGTTTTTTTTTTTTTGCTGT+TGG + Chr7:71013702-71013721 None:intergenic 20.0%
!!! TTTGAATTTTGTTGAGTTTA+AGG - Chr7:71013736-71013755 MsG0780039950.01.T01:intron 20.0%
! AAACATGAAACATGTTATAG+AGG + Chr7:71014922-71014941 None:intergenic 25.0%
! AAGAAATTTAACACCAAAGT+TGG - Chr7:71013333-71013352 MsG0780039950.01.T01:intron 25.0%
! ACACAATTTATCCTTACAAA+CGG - Chr7:71013234-71013253 MsG0780039950.01.T01:intron 25.0%
! ACCAACTAAAAATTATTAGC+AGG - Chr7:71015187-71015206 MsG0780039950.01.T01:intron 25.0%
! AGAAAAACCAATCAGAAAAA+TGG + Chr7:71016642-71016661 None:intergenic 25.0%
! AGATTGTAAAGTTAGTTAAC+CGG - Chr7:71015225-71015244 MsG0780039950.01.T01:intron 25.0%
! ATATGATAAAGACTTAGGTA+AGG + Chr7:71014546-71014565 None:intergenic 25.0%
! ATTATATGAACAGATAAAGG+GGG - Chr7:71015478-71015497 MsG0780039950.01.T01:intron 25.0%
! ATTATGGATTCATAGATTCA+AGG - Chr7:71015695-71015714 MsG0780039950.01.T01:intron 25.0%
! CCAACTAAAAATTATTAGCA+GGG - Chr7:71015188-71015207 MsG0780039950.01.T01:intron 25.0%
! CCTCAACAATAAAGAAAAAT+GGG + Chr7:71013890-71013909 None:intergenic 25.0%
! CTACATCACATAAATATCTA+AGG + Chr7:71014648-71014667 None:intergenic 25.0%
! CTCATTTGCAATTAAAATCA+AGG - Chr7:71014107-71014126 MsG0780039950.01.T01:intron 25.0%
! TACAACAATAAAATTCACAG+AGG - Chr7:71012883-71012902 MsG0780039950.01.T01:intron 25.0%
! TAGAAAAGAGCTTATGAATT+TGG - Chr7:71014019-71014038 MsG0780039950.01.T01:intron 25.0%
! TCCTCAACAATAAAGAAAAA+TGG + Chr7:71013891-71013910 None:intergenic 25.0%
! TGTTTGGTAAAATTAATGAG+TGG + Chr7:71016313-71016332 None:intergenic 25.0%
! TTAATAAAATAAGGCTGATG+AGG + Chr7:71015944-71015963 None:intergenic 25.0%
! TTCTTGATCAATGAATATCA+GGG - Chr7:71016992-71017011 MsG0780039950.01.T01:intron 25.0%
! TTTATAAACCTCATTATTGG+CGG + Chr7:71016519-71016538 None:intergenic 25.0%
! TTTATGTGCTACATTGAATT+TGG - Chr7:71014574-71014593 MsG0780039950.01.T01:intron 25.0%
!! TCTCTATTTGGTAAAAGTAT+CGG + Chr7:71016380-71016399 None:intergenic 25.0%
!! TGAATTTTTCTTGATACTTG+TGG - Chr7:71013429-71013448 MsG0780039950.01.T01:CDS 25.0%
!!! AAATCATATGCTTGCTTTTA+AGG + Chr7:71016586-71016605 None:intergenic 25.0%
!!! AACAGTTTGTTTTCAGTTTA+TGG - Chr7:71017230-71017249 MsG0780039950.01.T01:intron 25.0%
!!! AAGTTTTGATTTGACAACTA+GGG - Chr7:71015403-71015422 MsG0780039950.01.T01:intron 25.0%
!!! GTATATTTTGTTTCTGATAC+TGG + Chr7:71013560-71013579 None:intergenic 25.0%
!!! GTATTTACCATTTTTCTGAT+TGG - Chr7:71016632-71016651 MsG0780039950.01.T01:intron 25.0%
!!! TGTCATTTCTTTGAAATGTA+TGG - Chr7:71017159-71017178 MsG0780039950.01.T01:intron 25.0%
!!! TTGTTTTTATTGCTGTGATT+TGG - Chr7:71017018-71017037 MsG0780039950.01.T01:intron 25.0%
AAAGGAAAGACGATATCATT+AGG - Chr7:71016953-71016972 MsG0780039950.01.T01:intron 30.0%
AAGATTCTTGCATGTTTACA+AGG + Chr7:71015594-71015613 None:intergenic 30.0%
AAGGAAAGACGATATCATTA+GGG - Chr7:71016954-71016973 MsG0780039950.01.T01:intron 30.0%
ACTATCCAGCTTACAAATTA+TGG - Chr7:71015679-71015698 MsG0780039950.01.T01:intron 30.0%
AGTAAGACTCAAACTTTGAA+AGG - Chr7:71015323-71015342 MsG0780039950.01.T01:CDS 30.0%
AGTTTGGTAGATAGATCAAT+TGG - Chr7:71014422-71014441 MsG0780039950.01.T01:intron 30.0%
ATATGCGAACTGAAAACTAT+TGG + Chr7:71016157-71016176 None:intergenic 30.0%
ATCTGTATGTTTGTTCTTCA+GGG + Chr7:71014961-71014980 None:intergenic 30.0%
ATTGGATTTCAATCCAACTT+TGG + Chr7:71013349-71013368 None:intergenic 30.0%
CAAGGTAAAACTTTAAACGT+AGG - Chr7:71014847-71014866 MsG0780039950.01.T01:intron 30.0%
CAGAAGATTTAGTCTCTATT+TGG + Chr7:71016392-71016411 None:intergenic 30.0%
CAGCATGCATTGAAATAATA+TGG + Chr7:71016009-71016028 None:intergenic 30.0%
CTACAAATATTCTTACTGCA+AGG - Chr7:71016708-71016727 MsG0780039950.01.T01:intron 30.0%
CTTCTTGATCAATGAATATC+AGG - Chr7:71016991-71017010 MsG0780039950.01.T01:intron 30.0%
GAACTGAAAAACATGTTGAT+TGG - Chr7:71013451-71013470 MsG0780039950.01.T01:CDS 30.0%
GACAATCACTAAGATCATTA+AGG + Chr7:71015285-71015304 None:intergenic 30.0%
GTTATGCTAATACTTTGTTG+TGG - Chr7:71014723-71014742 MsG0780039950.01.T01:intron 30.0%
GTTTGGTAGATAGATCAATT+GGG - Chr7:71014423-71014442 MsG0780039950.01.T01:intron 30.0%
TAAAAATTATTAGCAGGGCA+TGG - Chr7:71015193-71015212 MsG0780039950.01.T01:intron 30.0%
TAACATGAAGCAGAATGTAT+TGG + Chr7:71015891-71015910 None:intergenic 30.0%
TATACTGTATGAATTGGGTA+AGG + Chr7:71013518-71013537 None:intergenic 30.0%
TATCTGTATGTTTGTTCTTC+AGG + Chr7:71014962-71014981 None:intergenic 30.0%
TCAATGCTATAAACCTTGAA+TGG - Chr7:71016543-71016562 MsG0780039950.01.T01:intron 30.0%
TCACATTAATACCGTTTGTA+AGG + Chr7:71013248-71013267 None:intergenic 30.0%
TTAATTGGATGACACGATAA+CGG + Chr7:71013395-71013414 None:intergenic 30.0%
TTATAAACCTCATTATTGGC+GGG + Chr7:71016518-71016537 None:intergenic 30.0%
TTGTCCATTGCAGATTTAAT+CGG + Chr7:71013314-71013333 None:intergenic 30.0%
! AAACTACGAAGTTTAAGATC+TGG + Chr7:71014213-71014232 None:intergenic 30.0%
! AGATCTTGGTTCATCATTTT+GGG - Chr7:71016664-71016683 MsG0780039950.01.T01:intron 30.0%
! ATTGTTAGTTTGATGCCAAT+AGG - Chr7:71016033-71016052 MsG0780039950.01.T01:intron 30.0%
! CAGATTGAATTTGAAGTGTT+TGG + Chr7:71016329-71016348 None:intergenic 30.0%
! TGAATCCATAATTTGTAAGC+TGG + Chr7:71015687-71015706 None:intergenic 30.0%
! TTGCTGTTGGTAGATAAAAA+GGG + Chr7:71013689-71013708 None:intergenic 30.0%
! TTTCGGTTAAACAGAAGTAT+TGG + Chr7:71013367-71013386 None:intergenic 30.0%
!! AAACTCTTCATTGCTTTTGT+TGG - Chr7:71013812-71013831 MsG0780039950.01.T01:intron 30.0%
!! CCCATTTTTCTTTATTGTTG+AGG - Chr7:71013887-71013906 MsG0780039950.01.T01:intron 30.0%
!! TTCTGAAGCCAATTTGAAAT+GGG - Chr7:71016407-71016426 MsG0780039950.01.T01:intron 30.0%
!! TTTGCTGTTGGTAGATAAAA+AGG + Chr7:71013690-71013709 None:intergenic 30.0%
!!! ATATGCTTGCTTTTAAGGTT+TGG + Chr7:71016581-71016600 None:intergenic 30.0%
!!! CCCTGCTAATAATTTTTAGT+TGG + Chr7:71015191-71015210 None:intergenic 30.0%
!!! GAAGTTTTGATTTGACAACT+AGG - Chr7:71015402-71015421 MsG0780039950.01.T01:intron 30.0%
!!! TATGCTTGCTTTTAAGGTTT+GGG + Chr7:71016580-71016599 None:intergenic 30.0%
AAATGACACATATACCAACC+AGG + Chr7:71017147-71017166 None:intergenic 35.0%
AACACAGTGATGAGCTTAAA+AGG + Chr7:71014782-71014801 None:intergenic 35.0%
AAGAACTTGTAGTACTGTCA+TGG + Chr7:71015534-71015553 None:intergenic 35.0%
AAGGGGGAAAACACAAAAAA+AGG - Chr7:71015494-71015513 MsG0780039950.01.T01:intron 35.0%
AATGACACATATACCAACCA+GGG + Chr7:71017146-71017165 None:intergenic 35.0%
ACATACCCTTATCCAAAAAG+TGG - Chr7:71016879-71016898 MsG0780039950.01.T01:intron 35.0%
ACTAAGTTGCTAGTGAACAA+TGG + Chr7:71015085-71015104 None:intergenic 35.0%
AGGGGTTATAGAACTATTCT+TGG - Chr7:71015347-71015366 MsG0780039950.01.T01:CDS 35.0%
ATGTTAGCGAGACAGAAAAA+GGG + Chr7:71016863-71016882 None:intergenic 35.0%
CAAAACCTCAGAGAATTTCT+GGG - Chr7:71015011-71015030 MsG0780039950.01.T01:intron 35.0%
CAAAAGCAATGAAGAGTTTC+TGG + Chr7:71013811-71013830 None:intergenic 35.0%
CAAAATGATGAACCAAGATC+TGG + Chr7:71016665-71016684 None:intergenic 35.0%
CATAAAGCCCCATTTCAAAT+TGG + Chr7:71016418-71016437 None:intergenic 35.0%
TACTGTCATGGAATACAAAC+AGG + Chr7:71015522-71015541 None:intergenic 35.0%
TATGTTAGCGAGACAGAAAA+AGG + Chr7:71016864-71016883 None:intergenic 35.0%
TATTTGAAGAACACGTGAAG+AGG + Chr7:71017111-71017130 None:intergenic 35.0%
TCAAAACCTCAGAGAATTTC+TGG - Chr7:71015010-71015029 MsG0780039950.01.T01:intron 35.0%
TCACTAGCAACTTAGTAAGA+TGG - Chr7:71015089-71015108 MsG0780039950.01.T01:CDS 35.0%
TCGCATATTAACTCTGAGTT+AGG - Chr7:71016169-71016188 MsG0780039950.01.T01:intron 35.0%
TCGGATAAGTTAGCAGATAA+AGG + Chr7:71016361-71016380 None:intergenic 35.0%
TGCTTCATGTTAGCATTATG+TGG - Chr7:71015899-71015918 MsG0780039950.01.T01:intron 35.0%
TGTTGTTAAAACAGTGAGGT+TGG - Chr7:71014599-71014618 MsG0780039950.01.T01:intron 35.0%
TTAGTGATTGCATGGTCATA+TGG - Chr7:71014172-71014191 MsG0780039950.01.T01:intron 35.0%
! AATCTCAGATTAGTTGTGAC+TGG - Chr7:71014394-71014413 MsG0780039950.01.T01:intron 35.0%
! ACTCAAACTTTGAAAGGTAG+GGG - Chr7:71015329-71015348 MsG0780039950.01.T01:CDS 35.0%
! AGACTCAAACTTTGAAAGGT+AGG - Chr7:71015327-71015346 MsG0780039950.01.T01:CDS 35.0%
! AGTCACAACTAATCTGAGAT+TGG + Chr7:71014395-71014414 None:intergenic 35.0%
! CAGATCTTGGTTCATCATTT+TGG - Chr7:71016663-71016682 MsG0780039950.01.T01:intron 35.0%
! CATAGTTCCTAAGAGTATGA+AGG + Chr7:71015571-71015590 None:intergenic 35.0%
! GACTCAAACTTTGAAAGGTA+GGG - Chr7:71015328-71015347 MsG0780039950.01.T01:CDS 35.0%
! GATCTTGGTTCATCATTTTG+GGG - Chr7:71016665-71016684 MsG0780039950.01.T01:intron 35.0%
! GGATTGTTGTTAAAACAGTG+AGG - Chr7:71014595-71014614 MsG0780039950.01.T01:intron 35.0%
! TCTGAAGCCAATTTGAAATG+GGG - Chr7:71016408-71016427 MsG0780039950.01.T01:intron 35.0%
! TGCATTTTATACACGGATGA+TGG - Chr7:71015153-71015172 MsG0780039950.01.T01:intron 35.0%
!! AAATATTTTGAACCTGTCCC+TGG - Chr7:71017126-71017145 MsG0780039950.01.T01:intron 35.0%
!! CTTCTGAAGCCAATTTGAAA+TGG - Chr7:71016406-71016425 MsG0780039950.01.T01:intron 35.0%
!! GATACGACACGATTTTGATA+CGG - Chr7:71012721-71012740 MsG0780039950.01.T01:CDS 35.0%
!! GTGGTGTTGTTAGTATCAAA+AGG + Chr7:71016447-71016466 None:intergenic 35.0%
!!! AGTGTCCACTTTTTGGATAA+GGG + Chr7:71016887-71016906 None:intergenic 35.0%
!!! ATTGGTTTTTCTCCAGATCT+TGG - Chr7:71016650-71016669 MsG0780039950.01.T01:intron 35.0%
!!! TAAAAAGGGAGCGGTTTTTT+TGG + Chr7:71013675-71013694 None:intergenic 35.0%
!!! TTACGCTCTTTTGAAGCTAT+TGG - Chr7:71015380-71015399 MsG0780039950.01.T01:CDS 35.0%
AAAGGTGAGAGAAAGTTGCA+AGG + Chr7:71013637-71013656 None:intergenic 40.0%
AACAGCAATAAGAGCCACTT+TGG + Chr7:71015038-71015057 None:intergenic 40.0%
AATGTGTGAACTCAACAACC+AGG - Chr7:71014480-71014499 MsG0780039950.01.T01:intron 40.0%
ACAATCTGATCAAGACCAGA+CGG + Chr7:71014274-71014293 None:intergenic 40.0%
AGATCATTAAGGCAAAACCC+TGG + Chr7:71015274-71015293 None:intergenic 40.0%
AGTTGCTAGTGAACAATGGT+TGG + Chr7:71015081-71015100 None:intergenic 40.0%
CAAAACCATTACAAGGGCAA+GGG + Chr7:71017417-71017436 None:intergenic 40.0%
CATGGTCATATGGTCAAGAT+CGG - Chr7:71014182-71014201 MsG0780039950.01.T01:intron 40.0%
CGCTATGTCATTCTCTTCAT+CGG - Chr7:71017074-71017093 MsG0780039950.01.T01:intron 40.0%
CTAAATTCCCGCCAATAATG+AGG - Chr7:71016508-71016527 MsG0780039950.01.T01:intron 40.0%
CTCATTATTGGCGGGAATTT+AGG + Chr7:71016510-71016529 None:intergenic 40.0%
GAAAATGCATTACATCCAGC+AGG + Chr7:71016133-71016152 None:intergenic 40.0%
GAATGACATAGCGAAGGATA+TGG + Chr7:71017067-71017086 None:intergenic 40.0%
GATCATTAAGGCAAAACCCT+GGG + Chr7:71015273-71015292 None:intergenic 40.0%
GTTGTGACTGGATCAAAGTT+TGG - Chr7:71014406-71014425 MsG0780039950.01.T01:intron 40.0%
GTTGTTGAGTTCACACATTC+AGG + Chr7:71014479-71014498 None:intergenic 40.0%
TACAATGTCATGTGTCTCAG+TGG - Chr7:71014684-71014703 MsG0780039950.01.T01:intron 40.0%
TATCCAAAAAGTGGACACTG+CGG - Chr7:71016888-71016907 MsG0780039950.01.T01:intron 40.0%
TCTGGTTATTGTGCTCTTTG+TGG - Chr7:71016757-71016776 MsG0780039950.01.T01:intron 40.0%
TGAAGAGAATGACATAGCGA+AGG + Chr7:71017073-71017092 None:intergenic 40.0%
TGAGCCGATTAAATCTGCAA+TGG - Chr7:71013307-71013326 MsG0780039950.01.T01:intron 40.0%
TGTCAAATGTGAAGTCAACC+TGG + Chr7:71014501-71014520 None:intergenic 40.0%
TGTCTTGCCTTCATACTCTT+AGG - Chr7:71015561-71015580 MsG0780039950.01.T01:intron 40.0%
TGTTGTGGTGATTACAGCTA+TGG - Chr7:71014738-71014757 MsG0780039950.01.T01:intron 40.0%
TTTAGAGAGAGAGAGAGAGA+GGG + Chr7:71013867-71013886 None:intergenic 40.0%
! AATTCAGGTTCATGCAAACG+AGG - Chr7:71016063-71016082 MsG0780039950.01.T01:intron 40.0%
! ATTATGTGGTTTTCTGCTGC+TGG - Chr7:71015913-71015932 MsG0780039950.01.T01:intron 40.0%
! ATTCAGGTTCATGCAAACGA+GGG - Chr7:71016064-71016083 MsG0780039950.01.T01:intron 40.0%
! CACTGATGCATTTGGAATTC+AGG + Chr7:71015796-71015815 None:intergenic 40.0%
! CTTGCCCTTGTAATGGTTTT+GGG - Chr7:71017416-71017435 MsG0780039950.01.T01:intron 40.0%
! GTTAGTTTGATGCCAATAGG+TGG - Chr7:71016036-71016055 MsG0780039950.01.T01:intron 40.0%
! GTTGGTAGATAAAAAGGGAG+CGG + Chr7:71013684-71013703 None:intergenic 40.0%
! TTGATTTGACAACTAGGGAC+AGG - Chr7:71015408-71015427 MsG0780039950.01.T01:intron 40.0%
! TTGCAGATTTAATCGGCTCA+AGG + Chr7:71013307-71013326 None:intergenic 40.0%
!! ACACGATAACGGATCTCTTT+CGG + Chr7:71013384-71013403 None:intergenic 40.0%
!! AGCTTTGAAAGCTCGTCTAT+TGG - Chr7:71015116-71015135 MsG0780039950.01.T01:CDS 40.0%
!! TGGTTCATCATTTTGGGGAA+TGG - Chr7:71016670-71016689 MsG0780039950.01.T01:intron 40.0%
!!! CAGTGTCCACTTTTTGGATA+AGG + Chr7:71016888-71016907 None:intergenic 40.0%
!!! CGGTTTTTTTGGTTTAGGGT+GGG + Chr7:71013664-71013683 None:intergenic 40.0%
!!! GGAGCGGTTTTTTTGGTTTA+GGG + Chr7:71013668-71013687 None:intergenic 40.0%
!!! TTTTTTTGGTTTAGGGTGGG+TGG + Chr7:71013661-71013680 None:intergenic 40.0%
AAAATAAGGCTGATGAGGCC+CGG + Chr7:71015939-71015958 None:intergenic 45.0%
AGACTGTAGCAATGCCAAAC+TGG - Chr7:71013759-71013778 MsG0780039950.01.T01:intron 45.0%
AGTTTGATGCCAATAGGTGG+AGG - Chr7:71016039-71016058 MsG0780039950.01.T01:intron 45.0%
ATCCAAAAAGTGGACACTGC+GGG - Chr7:71016889-71016908 MsG0780039950.01.T01:intron 45.0%
ATTGCCTGTTTGCTCACTTG+TGG - Chr7:71014824-71014843 MsG0780039950.01.T01:intron 45.0%
CACGCGATTGAATAGCTTAG+AGG - Chr7:71014338-71014357 MsG0780039950.01.T01:intron 45.0%
CAGTTCTTAAGCTCCCAGTT+TGG + Chr7:71013776-71013795 None:intergenic 45.0%
CCAAAACCATTACAAGGGCA+AGG + Chr7:71017418-71017437 None:intergenic 45.0%
CCCACCCAAAACCATTACAA+GGG + Chr7:71017423-71017442 None:intergenic 45.0%
CTCTAAGCTATTCAATCGCG+TGG + Chr7:71014340-71014359 None:intergenic 45.0%
GACTGTAGCAATGCCAAACT+GGG - Chr7:71013760-71013779 MsG0780039950.01.T01:intron 45.0%
GGTGTCTGTGTTTCCATTCA+AGG + Chr7:71016559-71016578 None:intergenic 45.0%
GTCATATGGTCAAGATCGGA+CGG - Chr7:71014186-71014205 MsG0780039950.01.T01:intron 45.0%
GTTTAGAGAGAGAGAGAGAG+AGG + Chr7:71013868-71013887 None:intergenic 45.0%
GTTTGATGCCAATAGGTGGA+GGG - Chr7:71016040-71016059 MsG0780039950.01.T01:intron 45.0%
TCAATGACTGCACGGAATCT+CGG + Chr7:71014134-71014153 None:intergenic 45.0%
TGTGGTGATTACAGCTATGG+AGG - Chr7:71014741-71014760 MsG0780039950.01.T01:intron 45.0%
TTAGAGAGAGAGAGAGAGAG+GGG + Chr7:71013866-71013885 None:intergenic 45.0%
TTGGTCCCAGAAATTCTCTG+AGG + Chr7:71015019-71015038 None:intergenic 45.0%
! ATTTTGAACCTGTCCCTGGT+TGG - Chr7:71017130-71017149 MsG0780039950.01.T01:intron 45.0%
! CCTTGCCCTTGTAATGGTTT+TGG - Chr7:71017415-71017434 MsG0780039950.01.T01:intron 45.0%
! TTGTTTGAGATTGGACCGTC+TGG - Chr7:71014256-71014275 MsG0780039950.01.T01:intron 45.0%
!! ACATGCAGCACTGATGCATT+TGG + Chr7:71015804-71015823 None:intergenic 45.0%
!! GAGAATTTCTGGGACCAAAG+TGG - Chr7:71015021-71015040 MsG0780039950.01.T01:intron 45.0%
!! GTTTTGGGTGGGGAGTTATT+TGG - Chr7:71017431-71017450 MsG0780039950.01.T01:CDS 45.0%
!!! CCCTTGTAATGGTTTTGGGT+GGG - Chr7:71017420-71017439 MsG0780039950.01.T01:intron 45.0%
!!! CCTTGTAATGGTTTTGGGTG+GGG - Chr7:71017421-71017440 MsG0780039950.01.T01:CDS 45.0%
!!! GCGGTTTTTTTGGTTTAGGG+TGG + Chr7:71013665-71013684 None:intergenic 45.0%
!!! GGGAGCGGTTTTTTTGGTTT+AGG + Chr7:71013669-71013688 None:intergenic 45.0%
AACCGGTGAGTTGCTTCTGA+TGG - Chr7:71015242-71015261 MsG0780039950.01.T01:intron 50.0%
AGCCATAGCAGTGCAACTTG+TGG + Chr7:71016466-71016485 None:intergenic 50.0%
AGGTTCATGCAAACGAGGGA+GGG - Chr7:71016068-71016087 MsG0780039950.01.T01:intron 50.0%
CACATATACCAACCAGGGAC+AGG + Chr7:71017141-71017160 None:intergenic 50.0%
CACCACAAGTTGCACTGCTA+TGG - Chr7:71016461-71016480 MsG0780039950.01.T01:intron 50.0%
CCAATAGGTGGAGGGAATTC+AGG - Chr7:71016048-71016067 MsG0780039950.01.T01:intron 50.0%
CCCCACCCAAAACCATTACA+AGG + Chr7:71017424-71017443 None:intergenic 50.0%
CCTGAATTCCCTCCACCTAT+TGG + Chr7:71016051-71016070 None:intergenic 50.0%
CTCCATCAGAAGCAACTCAC+CGG + Chr7:71015247-71015266 None:intergenic 50.0%
CTGTTTGCTCACTTGTGGCA+AGG - Chr7:71014829-71014848 MsG0780039950.01.T01:intron 50.0%
CTTACTGCAAGGATTGCTGC+TGG - Chr7:71016719-71016738 MsG0780039950.01.T01:intron 50.0%
CTTGCCACAAGTGAGCAAAC+AGG + Chr7:71014831-71014850 None:intergenic 50.0%
GAAGAACACGTGAAGAGGAC+AGG + Chr7:71017106-71017125 None:intergenic 50.0%
TCCAAAAAGTGGACACTGCG+GGG - Chr7:71016890-71016909 MsG0780039950.01.T01:intron 50.0%
TCGCGCAGTTAGTGATTGCA+TGG - Chr7:71014164-71014183 MsG0780039950.01.T01:intron 50.0%
! TACTGGTTGATCTTGCCTGC+TGG - Chr7:71016115-71016134 MsG0780039950.01.T01:intron 50.0%
! TGGTTGCTTTCTTGCTGCTC+TGG - Chr7:71016739-71016758 MsG0780039950.01.T01:intron 50.0%
! TGGTTTAGGGTGGGTGGAAA+AGG + Chr7:71013655-71013674 None:intergenic 50.0%
!!! GCCCTTGTAATGGTTTTGGG+TGG - Chr7:71017419-71017438 MsG0780039950.01.T01:intron 50.0%
ACACTGCGGGGACTCTGTAT+CGG - Chr7:71016902-71016921 MsG0780039950.01.T01:intron 55.0%
AGACGCGTGGTGGCATATAC+TGG - Chr7:71016098-71016117 MsG0780039950.01.T01:intron 55.0%
CAGGTTCATGCAAACGAGGG+AGG - Chr7:71016067-71016086 MsG0780039950.01.T01:intron 55.0%
GCGTGCAGTCAATGACTGCA+CGG + Chr7:71014142-71014161 None:intergenic 55.0%
GCTTCTGATGGAGAGTCCCA+GGG - Chr7:71015254-71015273 MsG0780039950.01.T01:intron 55.0%
GGGTACGAGGAGGATGACAA+CGG + Chr7:71013846-71013865 None:intergenic 55.0%
GGTTCATGCAAACGAGGGAG+GGG - Chr7:71016069-71016088 MsG0780039950.01.T01:intron 55.0%
GTCTGCCCTTGCCCTTGTAA+TGG - Chr7:71017409-71017428 MsG0780039950.01.T01:intron 55.0%
TGCTTCTGATGGAGAGTCCC+AGG - Chr7:71015253-71015272 MsG0780039950.01.T01:intron 55.0%
! TGTGGTTTTCTGCTGCTGGC+CGG - Chr7:71015917-71015936 MsG0780039950.01.T01:intron 55.0%
!! TCCCCGCAGTGTCCACTTTT+TGG + Chr7:71016894-71016913 None:intergenic 55.0%
! AGAGAGAGAGGGGTACGAGG+AGG + Chr7:71013856-71013875 None:intergenic 60.0%
! GAGAGAGAGAGAGGGGTACG+AGG + Chr7:71013859-71013878 None:intergenic 60.0%
! GTGGTTTTCTGCTGCTGGCC+GGG - Chr7:71015918-71015937 MsG0780039950.01.T01:intron 60.0%
GGAGGGGTAACACAGACGCG+TGG - Chr7:71016085-71016104 MsG0780039950.01.T01:intron 65.0%
GGGGTAACACAGACGCGTGG+TGG - Chr7:71016088-71016107 MsG0780039950.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 71012707 71017456 71012707 ID=MsG0780039950.01;Name=MsG0780039950.01
Chr7 mRNA 71012707 71017456 71012707 ID=MsG0780039950.01.T01;Parent=MsG0780039950.01;Name=MsG0780039950.01.T01;_AED=0.50;_eAED=0.57;_QI=0|0|0|0.87|1|1|8|0|213
Chr7 exon 71017421 71017456 71017421 ID=MsG0780039950.01.T01:exon:13612;Parent=MsG0780039950.01.T01
Chr7 exon 71015313 71015408 71015313 ID=MsG0780039950.01.T01:exon:13611;Parent=MsG0780039950.01.T01
Chr7 exon 71015061 71015141 71015061 ID=MsG0780039950.01.T01:exon:13610;Parent=MsG0780039950.01.T01
Chr7 exon 71014024 71014108 71014024 ID=MsG0780039950.01.T01:exon:13609;Parent=MsG0780039950.01.T01
Chr7 exon 71013377 71013497 71013377 ID=MsG0780039950.01.T01:exon:13608;Parent=MsG0780039950.01.T01
Chr7 exon 71013068 71013150 71013068 ID=MsG0780039950.01.T01:exon:13607;Parent=MsG0780039950.01.T01
Chr7 exon 71012912 71012941 71012912 ID=MsG0780039950.01.T01:exon:13606;Parent=MsG0780039950.01.T01
Chr7 exon 71012707 71012816 71012707 ID=MsG0780039950.01.T01:exon:13605;Parent=MsG0780039950.01.T01
Chr7 CDS 71017421 71017456 71017421 ID=MsG0780039950.01.T01:cds;Parent=MsG0780039950.01.T01
Chr7 CDS 71015313 71015408 71015313 ID=MsG0780039950.01.T01:cds;Parent=MsG0780039950.01.T01
Chr7 CDS 71015061 71015141 71015061 ID=MsG0780039950.01.T01:cds;Parent=MsG0780039950.01.T01
Chr7 CDS 71014024 71014108 71014024 ID=MsG0780039950.01.T01:cds;Parent=MsG0780039950.01.T01
Chr7 CDS 71013377 71013497 71013377 ID=MsG0780039950.01.T01:cds;Parent=MsG0780039950.01.T01
Chr7 CDS 71013068 71013150 71013068 ID=MsG0780039950.01.T01:cds;Parent=MsG0780039950.01.T01
Chr7 CDS 71012912 71012941 71012912 ID=MsG0780039950.01.T01:cds;Parent=MsG0780039950.01.T01
Chr7 CDS 71012707 71012816 71012707 ID=MsG0780039950.01.T01:cds;Parent=MsG0780039950.01.T01
Gene Sequence

>MsG0780039950.01.T01

ATGGACACGAGTGTGATACGACACGATTTTGATACGCTATGGAGGACTTTTCTGCTTACACCTTTTAAGCTCATCACTGTGTTTCTTCACGAAGCGAGTCATGCAATTGCCTGTTTGCTCACTTGTGGCAAGAGAATTTCTGGGACCAAAGTGGCTCTTATTGCTGTTATTTATAAGCAACTATGCGACCAACCATTGTTCACTAGCAACTTAGTGGAGGGAATTCAGGTTCATGCAAACGAGGGAGGGGTAACACAGACGCGTGGTGGCATATACTGGTTGATCTTGCCTGCTGGATATCTTGGTTCATCATTTTGGGGAATGGCTTTGATTCTTGCTTCTACAAATATTCTTACTGCAAGGATTGCTGCTGGTTGCTTTCTTGCTGCTCTGGTTATTGTGCTCTTTGTGGCTAAAATGGTTATTGTTTTTATTGCTGTGATTTGGCTTCTGCAAGAGAAGACGAAAGTCCATATCCTTCGCTATGTCATTCTCTTCATCGGAGTTATGAACAGTTTGTTTTCAGTTTATGATATTTATGATGATTTAATATCTAGAAGAGTCAACTCTAGTGATGCTGAGAAGTTTGCAGAAGTCTGCCCTTGCCCTTGTAATGGTTTTGGGTGGGGAGTTATTTGGTGA

Protein sequence

>MsG0780039950.01.T01

MDTSVIRHDFDTLWRTFLLTPFKLITVFLHEASHAIACLLTCGKRISGTKVALIAVIYKQLCDQPLFTSNLVEGIQVHANEGGVTQTRGGIYWLILPAGYLGSSFWGMALILASTNILTARIAAGCFLAALVIVLFVAKMVIVFIAVIWLLQEKTKVHILRYVILFIGVMNSLFSVYDIYDDLISRRVNSSDAEKFAEVCPCPCNGFGWGVIW*