AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006226.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006226.01.T01 MTR_1g116280 85.606 264 27 4 35 291 25 284 7.28e-132 375
MsG0180006226.01.T01 MTR_7g005530 72.973 185 50 0 107 291 37 221 3.38e-91 270
MsG0180006226.01.T01 MTR_7g005530 72.826 184 50 0 107 290 37 220 2.66e-90 268
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006226.01.T01 AT2G39290 69.036 197 58 1 95 291 103 296 1.38e-87 263
MsG0180006226.01.T01 AT3G55030 64.734 207 70 1 85 291 29 232 8.31e-86 257

Find 49 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGTGTGCGGATAACTTTC+AGG 0.269679 1:-101596607 None:intergenic
CTTCTGCAGGGCTCGCCTTA+TGG 0.285511 1:+101596372 MsG0180006226.01.T01:CDS
TTGTATATATGAGGAAAATT+TGG 0.305878 1:+101596402 MsG0180006226.01.T01:CDS
GCGTTGCTTTATACTTCTGC+AGG 0.371218 1:+101596359 MsG0180006226.01.T01:CDS
AGGGCTCGCCTTATGGTCAT+TGG 0.390373 1:+101596379 MsG0180006226.01.T01:CDS
CCTCTAAAAGCTTACTATCC+TGG 0.403316 1:-101595841 None:intergenic
CAGGGAATGGGCAGCTTCCC+AGG 0.403525 1:+101595823 MsG0180006226.01.T01:CDS
GGTCATTGGTTGTATATATG+AGG 0.404412 1:+101596393 MsG0180006226.01.T01:CDS
GGCTGTTGCTGTAAATAACT+TGG 0.415831 1:+101595949 MsG0180006226.01.T01:intron
AGATTACCATGTCTGCTGTC+AGG 0.423266 1:+101595804 MsG0180006226.01.T01:CDS
AGTCCCGGGTCGCGAGGAGG+AGG 0.426213 1:-101596009 None:intergenic
TAGCCCTCCTCCTCGCGACC+CGG 0.434469 1:+101596005 MsG0180006226.01.T01:CDS
CTGTAAATAACTTGGGGAAG+TGG 0.438180 1:+101595957 MsG0180006226.01.T01:CDS
GCTGCCTTTGTAGTGGGGTC+TGG 0.448252 1:+101596332 MsG0180006226.01.T01:CDS
CTCTAAAAGCTTACTATCCT+GGG 0.451476 1:-101595840 None:intergenic
CCATGTCTGCTGTCAGGGAA+TGG 0.452876 1:+101595810 MsG0180006226.01.T01:CDS
GCTAGTTGATTCAAGTGTAC+AGG 0.455003 1:-101595877 None:intergenic
GGAGGAGCTGCCTTTGTAGT+GGG 0.469667 1:+101596326 MsG0180006226.01.T01:CDS
GTGGTTACCGACGTCACAAA+AGG 0.473157 1:+101596509 MsG0180006226.01.T01:three_prime_UTR
GCTGTTGCTGTAAATAACTT+GGG 0.480082 1:+101595950 MsG0180006226.01.T01:CDS
CATGTCTGCTGTCAGGGAAT+GGG 0.482501 1:+101595811 MsG0180006226.01.T01:CDS
TAACCACACAACAGGAGAAT+CGG 0.488145 1:-101596493 None:intergenic
TAAATAGATACCTCAAGTCC+CGG 0.490023 1:-101596024 None:intergenic
ACTTTCAGGAATAGTAGAAA+TGG 0.492678 1:-101596593 None:intergenic
GACGTCGGTAACCACACAAC+AGG 0.507865 1:-101596501 None:intergenic
TGGAGGAGCTGCCTTTGTAG+TGG 0.508908 1:+101596325 MsG0180006226.01.T01:CDS
TCCTCGCGACCCGGGACTTG+AGG 0.512133 1:+101596014 MsG0180006226.01.T01:CDS
GATTACCATGTCTGCTGTCA+GGG 0.518665 1:+101595805 MsG0180006226.01.T01:CDS
ATATACAACCAATGACCATA+AGG 0.522448 1:-101596387 None:intergenic
CTAGTTGATTCAAGTGTACA+GGG 0.529672 1:-101595876 None:intergenic
ACCTCAAGTCCCGGGTCGCG+AGG 0.532890 1:-101596015 None:intergenic
CCATTCCCTGACAGCAGACA+TGG 0.547207 1:-101595810 None:intergenic
CGTTGCTTTATACTTCTGCA+GGG 0.549588 1:+101596360 MsG0180006226.01.T01:CDS
AGCCCTCCTCCTCGCGACCC+GGG 0.557384 1:+101596006 MsG0180006226.01.T01:CDS
GGATATATATGTGAAATACA+TGG 0.569622 1:-101596456 None:intergenic
TGGTTACCGACGTCACAAAA+GGG 0.573280 1:+101596510 MsG0180006226.01.T01:three_prime_UTR
GAGGAGCTGCCTTTGTAGTG+GGG 0.587924 1:+101596327 MsG0180006226.01.T01:CDS
CACAAAAGGGAGCTGCATAG+TGG 0.600747 1:+101596523 MsG0180006226.01.T01:three_prime_UTR
GTCCCGGGTCGCGAGGAGGA+GGG 0.609652 1:-101596008 None:intergenic
AAATAGATACCTCAAGTCCC+GGG 0.611811 1:-101596023 None:intergenic
GCTCCGATTCTCCTGTTGTG+TGG 0.612904 1:+101596490 MsG0180006226.01.T01:three_prime_UTR
ATATATGAGGAAAATTTGGA+AGG 0.614928 1:+101596406 MsG0180006226.01.T01:CDS
AACACCAGACCCCACTACAA+AGG 0.616087 1:-101596336 None:intergenic
TCAAGTCCCGGGTCGCGAGG+AGG 0.628305 1:-101596012 None:intergenic
AAATTTGGAAGGTGTTGTTG+AGG 0.632998 1:+101596417 MsG0180006226.01.T01:CDS
TTTATTACTTACAGTGACTG+GGG 0.636818 1:-101596635 None:intergenic
CTGTTGCTGTAAATAACTTG+GGG 0.642896 1:+101595951 MsG0180006226.01.T01:CDS
GGCTAACGCAGTCATCTGTG+TGG 0.691702 1:-101595987 None:intergenic
TAGTTGATTCAAGTGTACAG+GGG 0.750625 1:-101595875 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAGAAAAAAATAAAAATA+AGG - Chr1:101595772-101595791 None:intergenic 10.0%
!!! CATATATATCCAATTTTTTT+TGG + Chr1:101596468-101596487 MsG0180006226.01.T01:three_prime_UTR 15.0%
!! AATAAGTTATAAGTAAAGCA+TGG - Chr1:101595267-101595286 None:intergenic 20.0%
!! AATGAATGTGAAATTGTAAT+TGG - Chr1:101594721-101594740 None:intergenic 20.0%
!! ATAAGTTATAAGTAAAGCAT+GGG - Chr1:101595266-101595285 None:intergenic 20.0%
!! ATAATGAAACTTGGTATAAT+AGG + Chr1:101595928-101595947 MsG0180006226.01.T01:intron 20.0%
!! CAAATATCAAACATAGTAAT+AGG - Chr1:101594910-101594929 None:intergenic 20.0%
!! GTAAGTAATAAAAAGAAAGA+AGG + Chr1:101596646-101596665 MsG0180006226.01.T01:three_prime_UTR 20.0%
!! TAAAAATAAGGAATCTGATT+TGG - Chr1:101595760-101595779 None:intergenic 20.0%
!! TATTGTATTGTATATGCAAT+AGG - Chr1:101595017-101595036 None:intergenic 20.0%
!! TTGTATATATGAGGAAAATT+TGG + Chr1:101596402-101596421 MsG0180006226.01.T01:CDS 20.0%
!! TTTGTATATAGCTTTCTATA+TGG + Chr1:101594750-101594769 MsG0180006226.01.T01:intron 20.0%
!!! TATAGAAAAATAACTCCTTT+TGG + Chr1:101596179-101596198 MsG0180006226.01.T01:intron 20.0%
!!! TCTATTTACTTTGTATTTTG+AGG + Chr1:101596039-101596058 MsG0180006226.01.T01:intron 20.0%
!!! TTATTTAACTTGCTTTACTT+TGG - Chr1:101595387-101595406 None:intergenic 20.0%
! AAATTGTAATTGGCATATGA+TGG - Chr1:101594711-101594730 None:intergenic 25.0%
! AACATAGTAATAGGAAAAGT+AGG - Chr1:101594901-101594920 None:intergenic 25.0%
! ACATAGTAATAGGAAAAGTA+GGG - Chr1:101594900-101594919 None:intergenic 25.0%
! ATATATGAGGAAAATTTGGA+AGG + Chr1:101596406-101596425 MsG0180006226.01.T01:CDS 25.0%
! ATTGCTTGATAAACAAACAT+TGG - Chr1:101595463-101595482 None:intergenic 25.0%
! ATTGTATATGCAATAGGAAT+AGG - Chr1:101595011-101595030 None:intergenic 25.0%
! CTTATAAACTCAAATCCAAA+AGG - Chr1:101596197-101596216 None:intergenic 25.0%
! GACTGAAATCCATATTTATA+TGG + Chr1:101595654-101595673 MsG0180006226.01.T01:intron 25.0%
! GGATATATATGTGAAATACA+TGG - Chr1:101596459-101596478 None:intergenic 25.0%
! GGCTAATTACCATATAAATA+TGG - Chr1:101595666-101595685 None:intergenic 25.0%
! TATATAGCTTTCTATATGGA+TGG + Chr1:101594754-101594773 MsG0180006226.01.T01:intron 25.0%
! TCAAAAGCTTCATTGTTTAA+TGG + Chr1:101595632-101595651 MsG0180006226.01.T01:intron 25.0%
! TTCTTTCTCAGACAAATTAT+GGG + Chr1:101594531-101594550 MsG0180006226.01.T01:CDS 25.0%
!! TGCTTAAAACACAATTTTCA+GGG - Chr1:101596255-101596274 None:intergenic 25.0%
!! TTTTATTACTTACAGTGACT+GGG - Chr1:101596639-101596658 None:intergenic 25.0%
!! TTTTTATTACTTACAGTGAC+TGG - Chr1:101596640-101596659 None:intergenic 25.0%
!!! AATAATTTGCTCTAAACTTC+AGG + Chr1:101596133-101596152 MsG0180006226.01.T01:intron 25.0%
!!! ATCATTTTTCTCTGATTTAC+TGG + Chr1:101595720-101595739 MsG0180006226.01.T01:intron 25.0%
AAGAGGAAGAAGAAGAAATT+GGG - Chr1:101594513-101594532 None:intergenic 30.0%
AATTAAGCCAGACAATTTGT+TGG + Chr1:101595538-101595557 MsG0180006226.01.T01:intron 30.0%
ACTTTCAGGAATAGTAGAAA+TGG - Chr1:101596596-101596615 None:intergenic 30.0%
AGTACATAATAAGACCAATG+TGG - Chr1:101595141-101595160 None:intergenic 30.0%
ATATACAACCAATGACCATA+AGG - Chr1:101596390-101596409 None:intergenic 30.0%
CTTCTTTCTCAGACAAATTA+TGG + Chr1:101594530-101594549 MsG0180006226.01.T01:CDS 30.0%
GATCTAAGAATGCACAAAAT+GGG - Chr1:101594961-101594980 None:intergenic 30.0%
GCAAAGCAAAATACAATTAC+AGG - Chr1:101595579-101595598 None:intergenic 30.0%
TATATGCAATAGGAATAGGT+AGG - Chr1:101595007-101595026 None:intergenic 30.0%
TGAGCTTGTATAATGAAACT+TGG + Chr1:101595919-101595938 MsG0180006226.01.T01:intron 30.0%
TTAACTATGCATAATGACCA+TGG - Chr1:101595601-101595620 None:intergenic 30.0%
TTTATTACTTACAGTGACTG+GGG - Chr1:101596638-101596657 None:intergenic 30.0%
! AATGATGTCTCAAAAGCATA+AGG - Chr1:101595706-101595725 None:intergenic 30.0%
! AATTGTATTTTGCTTTGCCA+TGG + Chr1:101595581-101595600 MsG0180006226.01.T01:intron 30.0%
! GCTTAAAACACAATTTTCAG+GGG - Chr1:101596254-101596273 None:intergenic 30.0%
! GTGCTTAAAACACAATTTTC+AGG - Chr1:101596256-101596275 None:intergenic 30.0%
! TAATTTGTCTGAGAAAGAAG+AGG - Chr1:101594530-101594549 None:intergenic 30.0%
!!! TGTTTTAATCTAGAATGCTC+TGG + Chr1:101595494-101595513 MsG0180006226.01.T01:intron 30.0%
AAGACTTACTAGCAACAAGA+AGG - Chr1:101594672-101594691 None:intergenic 35.0%
AAGGAAAATACACGAGAGTA+TGG - Chr1:101595687-101595706 None:intergenic 35.0%
ACAGATAGAAGAAGAAGAAG+CGG - Chr1:101594387-101594406 None:intergenic 35.0%
ACATAATAAGACCAATGTGG+CGG - Chr1:101595138-101595157 None:intergenic 35.0%
AGACTTACTAGCAACAAGAA+GGG - Chr1:101594671-101594690 None:intergenic 35.0%
AGCAATGAAAATTGTGGTAC+TGG - Chr1:101594797-101594816 None:intergenic 35.0%
ATAAGGGATAGAGATGAAGA+TGG - Chr1:101594449-101594468 None:intergenic 35.0%
CTCCATGACTGAAGAAAAAT+GGG - Chr1:101596310-101596329 None:intergenic 35.0%
CTGTTGCTGTAAATAACTTG+GGG + Chr1:101595951-101595970 MsG0180006226.01.T01:CDS 35.0%
CTTATTATGTACTAGACCCT+TGG + Chr1:101595148-101595167 MsG0180006226.01.T01:CDS 35.0%
GAAGAGGAAGAAGAAGAAAT+TGG - Chr1:101594514-101594533 None:intergenic 35.0%
GAATCGGAGCCAAAAAAAAT+TGG - Chr1:101596480-101596499 None:intergenic 35.0%
GAATTCATATTTCCCTTGTC+TGG + Chr1:101595433-101595452 MsG0180006226.01.T01:intron 35.0%
GCTGTTGCTGTAAATAACTT+GGG + Chr1:101595950-101595969 MsG0180006226.01.T01:CDS 35.0%
GGATCTAAGAATGCACAAAA+TGG - Chr1:101594962-101594981 None:intergenic 35.0%
TAAATAGATACCTCAAGTCC+CGG - Chr1:101596027-101596046 None:intergenic 35.0%
TAAGGGATAGAGATGAAGAT+GGG - Chr1:101594448-101594467 None:intergenic 35.0%
TAGCTTTCTATATGGATGGT+TGG + Chr1:101594758-101594777 MsG0180006226.01.T01:intron 35.0%
TCAGACAAATTATGGGTTTC+TGG + Chr1:101594538-101594557 MsG0180006226.01.T01:CDS 35.0%
! AAAAGTAGGGTTAGTAAGTG+TGG - Chr1:101594887-101594906 None:intergenic 35.0%
! AAAGTAGGGTTAGTAAGTGT+GGG - Chr1:101594886-101594905 None:intergenic 35.0%
! AATGAAAATTGTGGTACTGG+CGG - Chr1:101594794-101594813 None:intergenic 35.0%
! AATTTGGAAGGTTCAGGTTT+AGG - Chr1:101594601-101594620 None:intergenic 35.0%
! CTAGTTGATTCAAGTGTACA+GGG - Chr1:101595879-101595898 None:intergenic 35.0%
! CTCTAAAAGCTTACTATCCT+GGG - Chr1:101595843-101595862 None:intergenic 35.0%
! GGTCATTGGTTGTATATATG+AGG + Chr1:101596393-101596412 MsG0180006226.01.T01:CDS 35.0%
! GGTGGTGAATGTTTCTATAA+GGG - Chr1:101594465-101594484 None:intergenic 35.0%
! TAATCAGTTTTCCTGTGTGT+TGG + Chr1:101595404-101595423 MsG0180006226.01.T01:intron 35.0%
! TAGTTGATTCAAGTGTACAG+GGG - Chr1:101595878-101595897 None:intergenic 35.0%
! TGGTGGTGAATGTTTCTATA+AGG - Chr1:101594466-101594485 None:intergenic 35.0%
! TGTAATTGGCATATGATGGA+TGG - Chr1:101594707-101594726 None:intergenic 35.0%
!! AAATTTGGAAGGTGTTGTTG+AGG + Chr1:101596417-101596436 MsG0180006226.01.T01:CDS 35.0%
!! TTCCCATTTTTCTTCAGTCA+TGG + Chr1:101596305-101596324 MsG0180006226.01.T01:intron 35.0%
AAACATTGGAGATCCAGACA+AGG - Chr1:101595449-101595468 None:intergenic 40.0%
AAATAGATACCTCAAGTCCC+GGG - Chr1:101596026-101596045 None:intergenic 40.0%
AACATTGGAGATCCAGACAA+GGG - Chr1:101595448-101595467 None:intergenic 40.0%
AATTCTCCAATCCAACACAC+AGG - Chr1:101595418-101595437 None:intergenic 40.0%
ACTTACTAGCAACAAGAAGG+GGG - Chr1:101594669-101594688 None:intergenic 40.0%
AGAAACATTCACCACCAACA+TGG + Chr1:101594469-101594488 MsG0180006226.01.T01:CDS 40.0%
AGCAGACATGGTAATCTACT+TGG - Chr1:101595801-101595820 None:intergenic 40.0%
CAATAGGAATAGGTAGGTAC+AGG - Chr1:101595001-101595020 None:intergenic 40.0%
CCTCCATGACTGAAGAAAAA+TGG - Chr1:101596311-101596330 None:intergenic 40.0%
CGATATGCCAACAAATTGTC+TGG - Chr1:101595548-101595567 None:intergenic 40.0%
CTGTAAATAACTTGGGGAAG+TGG + Chr1:101595957-101595976 MsG0180006226.01.T01:CDS 40.0%
CTTCATGTATCACCACTTGT+GGG + Chr1:101595327-101595346 MsG0180006226.01.T01:intron 40.0%
CTTCTACTCATTGCAGCTTA+TGG + Chr1:101595109-101595128 MsG0180006226.01.T01:intron 40.0%
GACATCATCAACCAATTCAC+CGG - Chr1:101594344-101594363 None:intergenic 40.0%
GACTTACTAGCAACAAGAAG+GGG - Chr1:101594670-101594689 None:intergenic 40.0%
GCAAAGATACCAACATCCAA+GGG - Chr1:101595167-101595186 None:intergenic 40.0%
GCATTACCTCTCTTCAATGA+TGG - Chr1:101595224-101595243 None:intergenic 40.0%
GGCTGTTGCTGTAAATAACT+TGG + Chr1:101595949-101595968 MsG0180006226.01.T01:intron 40.0%
GTACACTTGAATCAACTAGC+TGG + Chr1:101595880-101595899 MsG0180006226.01.T01:intron 40.0%
TAACCACACAACAGGAGAAT+CGG - Chr1:101596496-101596515 None:intergenic 40.0%
TCTTCATGTATCACCACTTG+TGG + Chr1:101595326-101595345 MsG0180006226.01.T01:intron 40.0%
! AGTTTTCCTGTGTGTTGGAT+TGG + Chr1:101595409-101595428 MsG0180006226.01.T01:intron 40.0%
! CACAATTTTCATTGCTGCCT+CGG + Chr1:101594801-101594820 MsG0180006226.01.T01:CDS 40.0%
! CCAGGATAGTAAGCTTTTAG+AGG + Chr1:101595841-101595860 MsG0180006226.01.T01:CDS 40.0%
! CCTCTAAAAGCTTACTATCC+TGG - Chr1:101595844-101595863 None:intergenic 40.0%
! CGTTGCTTTATACTTCTGCA+GGG + Chr1:101596360-101596379 MsG0180006226.01.T01:CDS 40.0%
! GATAGAGATGAAGATGGGTT+TGG - Chr1:101594443-101594462 None:intergenic 40.0%
! GCTAGTTGATTCAAGTGTAC+AGG - Chr1:101595880-101595899 None:intergenic 40.0%
!! ATTGGCATATGATGGATGGA+AGG - Chr1:101594703-101594722 None:intergenic 40.0%
!! CCATTTTTCTTCAGTCATGG+AGG + Chr1:101596308-101596327 MsG0180006226.01.T01:intron 40.0%
!! GGTGAATTGGTTGATGATGT+CGG + Chr1:101594343-101594362 MsG0180006226.01.T01:CDS 40.0%
AACGTGTGCGGATAACTTTC+AGG - Chr1:101596610-101596629 None:intergenic 45.0%
AAGAAGCAACCTCACATGGT+TGG - Chr1:101595310-101595329 None:intergenic 45.0%
AGATTACCATGTCTGCTGTC+AGG + Chr1:101595804-101595823 MsG0180006226.01.T01:CDS 45.0%
ATCAAGCCAATCAGTAACCG+AGG - Chr1:101594821-101594840 None:intergenic 45.0%
ATGATGGCAATGGCAGGTAT+AGG - Chr1:101595208-101595227 None:intergenic 45.0%
CATGAAGAAGCAACCTCACA+TGG - Chr1:101595314-101595333 None:intergenic 45.0%
CCATTGCCATCATTGAAGAG+AGG + Chr1:101595215-101595234 MsG0180006226.01.T01:CDS 45.0%
CCTCTCTTCAATGATGGCAA+TGG - Chr1:101595218-101595237 None:intergenic 45.0%
CGAGGCAGCAATGAAAATTG+TGG - Chr1:101594803-101594822 None:intergenic 45.0%
CTTAGATCCTGTTGCTGACA+AGG + Chr1:101594973-101594992 MsG0180006226.01.T01:CDS 45.0%
GATTACCATGTCTGCTGTCA+GGG + Chr1:101595805-101595824 MsG0180006226.01.T01:CDS 45.0%
GGCAAAGATACCAACATCCA+AGG - Chr1:101595168-101595187 None:intergenic 45.0%
GTATCACCACTTGTGGGATA+AGG + Chr1:101595333-101595352 MsG0180006226.01.T01:intron 45.0%
GTGAGCAATTTGGAAGGTTC+AGG - Chr1:101594607-101594626 None:intergenic 45.0%
TCTTCAATGATGGCAATGGC+AGG - Chr1:101595214-101595233 None:intergenic 45.0%
TGATGGCAATGGCAGGTATA+GGG - Chr1:101595207-101595226 None:intergenic 45.0%
TGATGGCTATATTGCTCGCA+AGG + Chr1:101594837-101594856 MsG0180006226.01.T01:CDS 45.0%
TGGTTACCGACGTCACAAAA+GGG + Chr1:101596510-101596529 MsG0180006226.01.T01:three_prime_UTR 45.0%
TGTACTAGACCCTTGGATGT+TGG + Chr1:101595155-101595174 MsG0180006226.01.T01:CDS 45.0%
TTCTATATGGATGGTTGGCG+TGG + Chr1:101594763-101594782 MsG0180006226.01.T01:CDS 45.0%
! AAGCACTGTCATTGACTGAG+AGG + Chr1:101596270-101596289 MsG0180006226.01.T01:intron 45.0%
! AGATGAAGATGGGTTTGGTC+TGG - Chr1:101594438-101594457 None:intergenic 45.0%
! GAAGGTTCAGGTTTAGGTTC+TGG - Chr1:101594595-101594614 None:intergenic 45.0%
! GCGTTGCTTTATACTTCTGC+AGG + Chr1:101596359-101596378 MsG0180006226.01.T01:CDS 45.0%
! TCAGGTTTAGGTTCTGGTTG+TGG - Chr1:101594589-101594608 None:intergenic 45.0%
!! TCGGTTACTGATTGGCTTGA+TGG + Chr1:101594820-101594839 MsG0180006226.01.T01:CDS 45.0%
AACACCAGACCCCACTACAA+AGG - Chr1:101596339-101596358 None:intergenic 50.0%
ACAGGTACCTTGTCAGCAAC+AGG - Chr1:101594983-101595002 None:intergenic 50.0%
ACATCAACGCCAACCATGTG+AGG + Chr1:101595298-101595317 MsG0180006226.01.T01:intron 50.0%
ACCACTTGTGGGATAAGGCT+TGG + Chr1:101595338-101595357 MsG0180006226.01.T01:intron 50.0%
ACGACCAAGTGTGAGAATGG+TGG - Chr1:101594635-101594654 None:intergenic 50.0%
ACTGGGGACAAAAACGTGTG+CGG - Chr1:101596622-101596641 None:intergenic 50.0%
CACAAAAGGGAGCTGCATAG+TGG + Chr1:101596523-101596542 MsG0180006226.01.T01:three_prime_UTR 50.0%
CATGTCTGCTGTCAGGGAAT+GGG + Chr1:101595811-101595830 MsG0180006226.01.T01:CDS 50.0%
CGACCAAGTGTGAGAATGGT+GGG - Chr1:101594634-101594653 None:intergenic 50.0%
GACACGACCAAGTGTGAGAA+TGG - Chr1:101594638-101594657 None:intergenic 50.0%
GGCAGAGTGAGCAATTTGGA+AGG - Chr1:101594613-101594632 None:intergenic 50.0%
GTGGTTACCGACGTCACAAA+AGG + Chr1:101596509-101596528 MsG0180006226.01.T01:three_prime_UTR 50.0%
TAGTTGTGACGCGTCCATGT+TGG - Chr1:101594486-101594505 None:intergenic 50.0%
TTGCTGCCTCGGTTACTGAT+TGG + Chr1:101594812-101594831 MsG0180006226.01.T01:CDS 50.0%
! ACCAAGCCTTATCCCACAAG+TGG - Chr1:101595342-101595361 None:intergenic 50.0%
! AGATGGGTTTGGTCTGGACT+TGG - Chr1:101594432-101594451 None:intergenic 50.0%
! GGTTTAGGTTCTGGTTGTGG+TGG - Chr1:101594586-101594605 None:intergenic 50.0%
! GTGGGATAAGGCTTGGTTGT+TGG + Chr1:101595345-101595364 MsG0180006226.01.T01:intron 50.0%
AGCAACAAGAAGGGGGACTG+CGG - Chr1:101594662-101594681 None:intergenic 55.0%
AGCGGTTGCGCTCAGTTTCA+AGG - Chr1:101594369-101594388 None:intergenic 55.0%
AGGGCTCGCCTTATGGTCAT+TGG + Chr1:101596379-101596398 MsG0180006226.01.T01:CDS 55.0%
ATAGGGAGTAGCCAGGGTAG+TGG - Chr1:101595190-101595209 None:intergenic 55.0%
CCATGTCTGCTGTCAGGGAA+TGG + Chr1:101595810-101595829 MsG0180006226.01.T01:CDS 55.0%
CCATTCCCTGACAGCAGACA+TGG - Chr1:101595813-101595832 None:intergenic 55.0%
CTGCCCACCATTCTCACACT+TGG + Chr1:101594628-101594647 MsG0180006226.01.T01:CDS 55.0%
GACGTCGGTAACCACACAAC+AGG - Chr1:101596504-101596523 None:intergenic 55.0%
GAGGAGCTGCCTTTGTAGTG+GGG + Chr1:101596327-101596346 MsG0180006226.01.T01:CDS 55.0%
GCAGGTATAGGGAGTAGCCA+GGG - Chr1:101595196-101595215 None:intergenic 55.0%
GCTCCGATTCTCCTGTTGTG+TGG + Chr1:101596490-101596509 MsG0180006226.01.T01:three_prime_UTR 55.0%
GCTTATGGTTGCCGCCACAT+TGG + Chr1:101595124-101595143 MsG0180006226.01.T01:intron 55.0%
GGAGGAGCTGCCTTTGTAGT+GGG + Chr1:101596326-101596345 MsG0180006226.01.T01:CDS 55.0%
GGCTAACGCAGTCATCTGTG+TGG - Chr1:101595990-101596009 None:intergenic 55.0%
GGTATCTTTGCCCACTACCC+TGG + Chr1:101595176-101595195 MsG0180006226.01.T01:CDS 55.0%
GGTGGGCAGAGTGAGCAATT+TGG - Chr1:101594617-101594636 None:intergenic 55.0%
TAGGGAGTAGCCAGGGTAGT+GGG - Chr1:101595189-101595208 None:intergenic 55.0%
TGGAGGAGCTGCCTTTGTAG+TGG + Chr1:101596325-101596344 MsG0180006226.01.T01:CDS 55.0%
TTGTGACGCGTCCATGTTGG+TGG - Chr1:101594483-101594502 None:intergenic 55.0%
! GCAGCTCCCTTTTGTGACGT+CGG - Chr1:101596519-101596538 None:intergenic 55.0%
! TGGGTTTGGTCTGGACTTGG+CGG - Chr1:101594429-101594448 None:intergenic 55.0%
ACTTGGCGGCAGTGGCTGAA+CGG - Chr1:101594415-101594434 None:intergenic 60.0%
CTTCTGCAGGGCTCGCCTTA+TGG + Chr1:101596372-101596391 MsG0180006226.01.T01:CDS 60.0%
GGCAGGTATAGGGAGTAGCC+AGG - Chr1:101595197-101595216 None:intergenic 60.0%
! GCTGCCTTTGTAGTGGGGTC+TGG + Chr1:101596332-101596351 MsG0180006226.01.T01:CDS 60.0%
CAGGGAATGGGCAGCTTCCC+AGG + Chr1:101595823-101595842 MsG0180006226.01.T01:CDS 65.0%
TGGTCTGGACTTGGCGGCAG+TGG - Chr1:101594423-101594442 None:intergenic 65.0%
ACCTCAAGTCCCGGGTCGCG+AGG - Chr1:101596018-101596037 None:intergenic 70.0%
TAGCCCTCCTCCTCGCGACC+CGG + Chr1:101596005-101596024 MsG0180006226.01.T01:CDS 70.0%
TCAAGTCCCGGGTCGCGAGG+AGG - Chr1:101596015-101596034 None:intergenic 70.0%
TCCTCGCGACCCGGGACTTG+AGG + Chr1:101596014-101596033 MsG0180006226.01.T01:CDS 70.0%
AGCCCTCCTCCTCGCGACCC+GGG + Chr1:101596006-101596025 MsG0180006226.01.T01:CDS 75.0%
AGTCCCGGGTCGCGAGGAGG+AGG - Chr1:101596012-101596031 None:intergenic 75.0%
GTCCCGGGTCGCGAGGAGGA+GGG - Chr1:101596011-101596030 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 101594334 101596669 101594334 ID=MsG0180006226.01;Name=MsG0180006226.01
Chr1 mRNA 101594334 101596669 101594334 ID=MsG0180006226.01.T01;Parent=MsG0180006226.01;Name=MsG0180006226.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0.66|0.71|1|0|0|7|227|291
Chr1 exon 101595804 101595862 101595804 ID=MsG0180006226.01.T01:exon:15063;Parent=MsG0180006226.01.T01
Chr1 exon 101595950 101596035 101595950 ID=MsG0180006226.01.T01:exon:15064;Parent=MsG0180006226.01.T01
Chr1 exon 101596322 101596669 101596322 ID=MsG0180006226.01.T01:exon:15065;Parent=MsG0180006226.01.T01
Chr1 CDS 101594334 101594682 101594334 ID=MsG0180006226.01.T01:cds;Parent=MsG0180006226.01.T01
Chr1 CDS 101594761 101594859 101594761 ID=MsG0180006226.01.T01:cds;Parent=MsG0180006226.01.T01
Chr1 CDS 101594945 101594994 101594945 ID=MsG0180006226.01.T01:cds;Parent=MsG0180006226.01.T01
Chr1 CDS 101595125 101595236 101595125 ID=MsG0180006226.01.T01:cds;Parent=MsG0180006226.01.T01
Chr1 CDS 101595804 101595862 101595804 ID=MsG0180006226.01.T01:cds;Parent=MsG0180006226.01.T01
Chr1 CDS 101595950 101596035 101595950 ID=MsG0180006226.01.T01:cds;Parent=MsG0180006226.01.T01
Chr1 CDS 101596322 101596442 101596322 ID=MsG0180006226.01.T01:cds;Parent=MsG0180006226.01.T01
Chr1 three_prime_UTR 101596443 101596669 101596443 ID=MsG0180006226.01.T01:three_prime_utr;Parent=MsG0180006226.01.T01
Chr1 mRNA 101594334 101595889 101594334 ID=MsG0180006226.01.T02;Parent=MsG0180006226.01;Name=MsG0180006226.01.T02;_AED=0.49;_eAED=0.51;_QI=22|0.5|0.6|1|0|0|5|215|152
Chr1 exon 101595804 101595889 101595804 ID=MsG0180006226.01.T02:exon:15066;Parent=MsG0180006226.01.T02
Chr1 five_prime_UTR 101594334 101594355 101594334 ID=MsG0180006226.01.T02:five_prime_utr;Parent=MsG0180006226.01.T02
Chr1 CDS 101594356 101594682 101594356 ID=MsG0180006226.01.T02:cds;Parent=MsG0180006226.01.T02
Chr1 CDS 101594761 101594859 101594761 ID=MsG0180006226.01.T02:cds;Parent=MsG0180006226.01.T02
Chr1 CDS 101594945 101594977 101594945 ID=MsG0180006226.01.T02:cds;Parent=MsG0180006226.01.T02
Chr1 three_prime_UTR 101594978 101594994 101594978 ID=MsG0180006226.01.T02:three_prime_utr;Parent=MsG0180006226.01.T02
Chr1 three_prime_UTR 101595125 101595236 101595125 ID=MsG0180006226.01.T02:three_prime_utr;Parent=MsG0180006226.01.T02
Chr1 three_prime_UTR 101595804 101595889 101595804 ID=MsG0180006226.01.T02:three_prime_utr;Parent=MsG0180006226.01.T02
Gene Sequence

>MsG0180006226.01.T01

TGCTTGTCCGGTGAATTGGTTGATGATGTCGGCCTTGAAACTGAGCGCAACCGCTTCTTCTTCTTCTATCTGTTTCGTCCGTTCAGCCACTGCCGCCAAGTCCAGACCAAACCCATCTTCATCTCTATCCCTTATAGAAACATTCACCACCAACATGGACGCGTCACAACTAAATTCCCAATTTCTTCTTCTTCCTCTTCTTTCTCAGACAAATTATGGGTTTCTGGAAAAGCTCTTGTCTCAACACTTCCACCACAACCAGAACCTAAACCTGAACCTTCCAAATTGCTCACTCTGCCCACCATTCTCACACTTGGTCGTGTCGCCGCAGTCCCCCTTCTTGTTGCTACTTTCTATATGGATGGTTGGCGTGGAACAGCCGCCAGTACCACAATTTTCATTGCTGCCTCGGTTACTGATTGGCTTGATGGCTATATTGCTCGCAAGGATGAACTTAAAATCCCATTTTGTGCATTCTTAGATCCTGTTGCTGACAAGCTTATGGTTGCCGCCACATTGGTCTTATTATGTACTAGACCCTTGGATGTTGGTATCTTTGCCCACTACCCTGGCTACTCCCTATACCTGCCATTGCCATCATTGAAGAGAGAGATTACCATGTCTGCTGTCAGGGAATGGGCAGCTTCCCAGGATAGTAAGCTTTTAGAGGCTGTTGCTGTAAATAACTTGGGGAAGTGGAAAACAGCCACACAGATGACTGCGTTAGCCCTCCTCCTCGCGACCCGGGACTTGAGTCATGGAGGAGCTGCCTTTGTAGTGGGGTCTGGTGTTGCGTTGCTTTATACTTCTGCAGGGCTCGCCTTATGGTCATTGGTTGTATATATGAGGAAAATTTGGAAGGTGTTGTTGAGGTAG

>MsG0180006226.01.T02

ATGATGTCGGCCTTGAAACTGAGCGCAACCGCTTCTTCTTCTTCTATCTGTTTCGTCCGTTCAGCCACTGCCGCCAAGTCCAGACCAAACCCATCTTCATCTCTATCCCTTATAGAAACATTCACCACCAACATGGACGCGTCACAACTAAATTCCCAATTTCTTCTTCTTCCTCTTCTTTCTCAGACAAATTATGGGTTTCTGGAAAAGCTCTTGTCTCAACACTTCCACCACAACCAGAACCTAAACCTGAACCTTCCAAATTGCTCACTCTGCCCACCATTCTCACACTTGGTCGTGTCGCCGCAGTCCCCCTTCTTGTTGCTACTTTCTATATGGATGGTTGGCGTGGAACAGCCGCCAGTACCACAATTTTCATTGCTGCCTCGGTTACTGATTGGCTTGATGGCTATATTGCTCGCAAGGATGAACTTAAAATCCCATTTTGTGCATTCTTAG

Protein sequence

>MsG0180006226.01.T01

CLSGELVDDVGLETERNRFFFFYLFRPFSHCRQVQTKPIFISIPYRNIHHQHGRVTTKFPISSSSSSFSDKLWVSGKALVSTLPPQPEPKPEPSKLLTLPTILTLGRVAAVPLLVATFYMDGWRGTAASTTIFIAASVTDWLDGYIARKDELKIPFCAFLDPVADKLMVAATLVLLCTRPLDVGIFAHYPGYSLYLPLPSLKREITMSAVREWAASQDSKLLEAVAVNNLGKWKTATQMTALALLLATRDLSHGGAAFVVGSGVALLYTSAGLALWSLVVYMRKIWKVLLR*

>MsG0180006226.01.T02

MMSALKLSATASSSSICFVRSATAAKSRPNPSSSLSLIETFTTNMDASQLNSQFLLLPLLSQTNYGFLEKLLSQHFHHNQNLNLNLPNCSLCPPFSHLVVSPQSPFLLLLSIWMVGVEQPPVPQFSLLPRLLIGLMAILLARMNLKSHFVHS*