AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023571.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023571.01.T01 MTR_8g099900 62.500 240 40 4 1 203 1 227 1.79e-92 281
MsG0480023571.01.T01 MTR_8g099900 77.778 153 21 1 51 203 29 168 1.02e-80 249
MsG0480023571.01.T01 MTR_3g498785 62.500 144 40 3 51 194 91 220 2.38e-58 192
MsG0480023571.01.T01 MTR_3g498785 62.500 144 40 3 51 194 113 242 3.37e-58 193
MsG0480023571.01.T01 MTR_5g023810 41.379 145 69 4 54 194 93 225 2.51e-27 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023571.01.T01 AT5G23690 58.621 145 46 3 51 194 95 226 6.29e-50 171
MsG0480023571.01.T01 AT3G48830 54.248 153 57 2 51 203 90 229 1.02e-49 170
MsG0480023571.01.T01 AT1G28090 51.389 144 56 3 51 194 113 242 1.73e-47 160
MsG0480023571.01.T01 AT1G28090 51.389 144 56 3 51 194 50 179 6.58e-47 161
MsG0480023571.01.T01 AT1G28090 51.389 144 56 3 51 194 77 206 1.02e-46 161
MsG0480023571.01.T01 AT1G28090 51.389 144 56 3 51 194 77 206 1.26e-46 161
MsG0480023571.01.T01 AT1G28090 51.389 144 56 3 51 194 113 242 2.15e-46 161
MsG0480023571.01.T01 AT2G17580 44.444 153 71 4 51 194 90 237 8.12e-35 131

Find 53 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGTCTTTCTTCCTCAATT+TGG 0.193186 4:-87036381 MsG0480023571.01.T01:intron
ATCCATATGACGTGACATAT+TGG 0.283444 4:+87038387 None:intergenic
GTTAAAATATCAAAATCTTT+TGG 0.298570 4:+87039293 None:intergenic
CATGTAATCATATACAATTT+TGG 0.303365 4:+87037936 None:intergenic
TCCTCAATTTGGATAACCTT+TGG 0.326197 4:-87036370 MsG0480023571.01.T01:CDS
TATTGAACAGGTCCGAACTA+TGG 0.344805 4:-87037806 MsG0480023571.01.T01:intron
GGGTATAATGTTTACCTTGT+AGG 0.375547 4:-87039350 MsG0480023571.01.T01:CDS
ACCTTGTAGGAGGTTGTGTC+CGG 0.377122 4:-87039337 MsG0480023571.01.T01:CDS
TCCCAATATGTCACGTCATA+TGG 0.389445 4:-87038389 MsG0480023571.01.T01:CDS
AGGACGAAGATGAAGAAGAT+TGG 0.395083 4:+87039902 None:intergenic
GTCCTCCTTGTCACATCCCT+TGG 0.404839 4:+87038165 None:intergenic
AGATACCTTGCGGGCACATT+GGG 0.406728 4:+87039872 None:intergenic
TTCCGTGTCATAGCAGCTTA+TGG 0.409908 4:-87036336 MsG0480023571.01.T01:CDS
TCCATATGACGTGACATATT+GGG 0.413462 4:+87038388 None:intergenic
CAAAATTGTATATGATTACA+TGG 0.423212 4:-87037935 MsG0480023571.01.T01:CDS
TCCTCCTTGTCACATCCCTT+GGG 0.437891 4:+87038166 None:intergenic
GGACGAAGATGAAGAAGATT+GGG 0.458027 4:+87039903 None:intergenic
GGTGTGAGATAGTTGGTAAA+AGG 0.459123 4:-87038413 MsG0480023571.01.T01:CDS
AACACTGCCAAATGCAAGCC+TGG 0.468222 4:-87038217 MsG0480023571.01.T01:CDS
GTGTCTACCAGGCTTGCATT+TGG 0.479365 4:+87038210 None:intergenic
TGCTATGACACGGAACTGTT+AGG 0.479800 4:+87036344 None:intergenic
AAGATACCTTGCGGGCACAT+TGG 0.494296 4:+87039871 None:intergenic
AAATAAGTAAGATACCTTGC+GGG 0.513988 4:+87039863 None:intergenic
CGGGCACATTGGGATGGGAT+AGG 0.518264 4:+87039882 None:intergenic
TAAAACAGATTGAGAAACAT+AGG 0.523052 4:+87038338 None:intergenic
TAGCTGCAGGAACCATAGTT+CGG 0.526127 4:+87037794 None:intergenic
ACACTTTGCTCATGATATTG+AGG 0.529024 4:-87038191 MsG0480023571.01.T01:CDS
CCCGGACACAACCTCCTACA+AGG 0.532402 4:+87039336 None:intergenic
GCCAAAGGTTATCCAAATTG+AGG 0.535706 4:+87036369 None:intergenic
ACCTTGCGGGCACATTGGGA+TGG 0.537304 4:+87039876 None:intergenic
CCTTGTAGGAGGTTGTGTCC+GGG 0.543635 4:-87039336 MsG0480023571.01.T01:CDS
TATAATGTTTACCTTGTAGG+AGG 0.544774 4:-87039347 MsG0480023571.01.T01:CDS
CCTTGCGGGCACATTGGGAT+GGG 0.546748 4:+87039877 None:intergenic
ATATGATTACATGGGAGGAA+TGG 0.547366 4:-87037926 MsG0480023571.01.T01:CDS
CCCATCCCAATGTGCCCGCA+AGG 0.552957 4:-87039877 MsG0480023571.01.T01:CDS
ACAAGGAGGACTATCTTCGC+TGG 0.554427 4:-87038153 MsG0480023571.01.T01:CDS
TCTTGAAAAGAAGTAGCTGC+AGG 0.561352 4:+87037781 None:intergenic
TCATGATATTGAGGCACCCA+AGG 0.567579 4:-87038182 MsG0480023571.01.T01:CDS
TTTGCTTTAGTATCATGTCC+CGG 0.572529 4:+87039318 None:intergenic
TCATGAGCAAAGTGTCTACC+AGG 0.574024 4:+87038199 None:intergenic
ATTGTATATGATTACATGGG+AGG 0.582051 4:-87037931 MsG0480023571.01.T01:CDS
AACTTCAGCGGATCTTAGAG+AGG 0.608695 4:-87039273 MsG0480023571.01.T01:intron
AATATGTCACGTCATATGGA+TGG 0.608886 4:-87038385 MsG0480023571.01.T01:CDS
GATGGTATCATCGTTGAGGT+TGG 0.616180 4:-87038367 MsG0480023571.01.T01:CDS
TACCATAAGCTGCTATGACA+CGG 0.617563 4:+87036334 None:intergenic
GGCACCCAAGGGATGTGACA+AGG 0.623953 4:-87038170 MsG0480023571.01.T01:CDS
GAAATAAGTAAGATACCTTG+CGG 0.633338 4:+87039862 None:intergenic
CATGATATTGAGGCACCCAA+GGG 0.636305 4:-87038181 MsG0480023571.01.T01:CDS
TATGGATGGTATCATCGTTG+AGG 0.639643 4:-87038371 MsG0480023571.01.T01:CDS
AGGAGGACTATCTTCGCTGG+AGG 0.648114 4:-87038150 MsG0480023571.01.T01:CDS
AAAATTGTATATGATTACAT+GGG 0.668677 4:-87037934 MsG0480023571.01.T01:CDS
CGGAACTGTTAGGAAGCCAA+AGG 0.678941 4:+87036354 None:intergenic
ACCCAAGGGATGTGACAAGG+AGG 0.730284 4:-87038167 MsG0480023571.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCTTTAAATAATATGTT+GGG + Chr4:87037469-87037488 None:intergenic 10.0%
!! ATTTATATTTATCTATATGT+TGG - Chr4:87036671-87036690 MsG0480023571.01.T01:intron 10.0%
!! TATATCTTTAAATAATATGT+TGG + Chr4:87037470-87037489 None:intergenic 10.0%
!!! ATTTAAAATAAGATAGAAAT+AGG + Chr4:87037034-87037053 None:intergenic 10.0%
!!! TTTTAAATTATTTGTTTAGA+TGG - Chr4:87037046-87037065 MsG0480023571.01.T01:intron 10.0%
!! AAAATTGTATATGATTACAT+GGG - Chr4:87038335-87038354 MsG0480023571.01.T01:CDS 15.0%
!! GATTATTATTATCAGTATTA+TGG - Chr4:87037302-87037321 MsG0480023571.01.T01:intron 15.0%
!! TTCGTGTTAATATTTATTAA+AGG - Chr4:87036611-87036630 MsG0480023571.01.T01:intron 15.0%
!!! AATAGAGATTTTACAATTAA+TGG - Chr4:87038151-87038170 MsG0480023571.01.T01:CDS 15.0%
!!! ATAGAGATTTTACAATTAAT+GGG - Chr4:87038152-87038171 MsG0480023571.01.T01:CDS 15.0%
!!! GTTAAAATATCAAAATCTTT+TGG + Chr4:87036979-87036998 None:intergenic 15.0%
!!! TAAGAAAATTGTTTTTTGTA+TGG + Chr4:87039174-87039193 None:intergenic 15.0%
!!! TATTTTTACGAAATGAATTA+CGG + Chr4:87039324-87039343 None:intergenic 15.0%
!! AAGCTAAAATTTAGACTTTA+AGG - Chr4:87037681-87037700 MsG0480023571.01.T01:intron 20.0%
!! AATTGATCAAGTAAATAAGA+AGG - Chr4:87036702-87036721 MsG0480023571.01.T01:intron 20.0%
!! AGCTAAAATTTAGACTTTAA+GGG - Chr4:87037682-87037701 MsG0480023571.01.T01:intron 20.0%
!! ATATGCCTTTATATATGTAT+AGG - Chr4:87037181-87037200 MsG0480023571.01.T01:intron 20.0%
!! CAAAATTGTATATGATTACA+TGG - Chr4:87038334-87038353 MsG0480023571.01.T01:CDS 20.0%
!! TATGCCTTTATATATGTATA+GGG - Chr4:87037182-87037201 MsG0480023571.01.T01:intron 20.0%
!! TATTATCAGTATTATGGAAT+GGG - Chr4:87037308-87037327 MsG0480023571.01.T01:intron 20.0%
!! TTAAAGGGAAAAATTAAAAG+AGG + Chr4:87037564-87037583 None:intergenic 20.0%
!! TTATTATCAGTATTATGGAA+TGG - Chr4:87037307-87037326 MsG0480023571.01.T01:intron 20.0%
!!! ATTTTTACGAAATGAATTAC+GGG + Chr4:87039323-87039342 None:intergenic 20.0%
!!! ATTTTTTGTTTCTAATCCAA+TGG + Chr4:87037407-87037426 None:intergenic 20.0%
!!! CATGTAATCATATACAATTT+TGG + Chr4:87038336-87038355 None:intergenic 20.0%
!!! GAATTATTTTTCCTAATGTA+TGG - Chr4:87039762-87039781 MsG0480023571.01.T01:intron 20.0%
!!! TTCTTATTCGAGTATTTTTA+GGG - Chr4:87039650-87039669 MsG0480023571.01.T01:intron 20.0%
!!! TTTTGATATTTTAACTTCAG+CGG - Chr4:87036984-87037003 MsG0480023571.01.T01:intron 20.0%
! AACTCAATATCATGCATATT+CGG + Chr4:87039556-87039575 None:intergenic 25.0%
! AAGATAGAAATAGGAAATGA+AGG + Chr4:87037025-87037044 None:intergenic 25.0%
! AATAATGCAGCATCATTAAA+GGG + Chr4:87037579-87037598 None:intergenic 25.0%
! ACAACAACAACAACAAAAAA+AGG + Chr4:87036889-87036908 None:intergenic 25.0%
! ATAATCATAATCTAGACTGT+TGG + Chr4:87037288-87037307 None:intergenic 25.0%
! ATTCAGTATAAGACTTGATA+AGG - Chr4:87038746-87038765 MsG0480023571.01.T01:intron 25.0%
! ATTTGCAGCAAAAAAGAAAA+GGG + Chr4:87038222-87038241 None:intergenic 25.0%
! GACTACTTATCATCATAATT+AGG - Chr4:87039624-87039643 MsG0480023571.01.T01:intron 25.0%
! TAAAACAGATTGAGAAACAT+AGG + Chr4:87037934-87037953 None:intergenic 25.0%
! TACTTATCATCATAATTAGG+TGG - Chr4:87039627-87039646 MsG0480023571.01.T01:intron 25.0%
! TATGAAAATGGTGACAAAAT+AGG + Chr4:87038554-87038573 None:intergenic 25.0%
! TATTTGCAAGGATTATGTAA+AGG + Chr4:87039524-87039543 None:intergenic 25.0%
! TCTATCGTAATTTATTGAAC+AGG - Chr4:87038451-87038470 MsG0480023571.01.T01:intron 25.0%
! TTTAAGGGAAATTGAGTTAT+AGG - Chr4:87037697-87037716 MsG0480023571.01.T01:intron 25.0%
!! ATGTTGAGAACCTTTTTAAT+TGG + Chr4:87036790-87036809 None:intergenic 25.0%
!! GTTCTTATTCGAGTATTTTT+AGG - Chr4:87039649-87039668 MsG0480023571.01.T01:intron 25.0%
!! TATTTTTCCTAATGTATGGT+TGG - Chr4:87039766-87039785 MsG0480023571.01.T01:intron 25.0%
!! TGAATCTTGACTCAATTTTT+AGG - Chr4:87037815-87037834 MsG0480023571.01.T01:intron 25.0%
!! TGTCACCATTTTCATATTTT+GGG - Chr4:87038558-87038577 MsG0480023571.01.T01:intron 25.0%
!! TTAAGAATTTTGTGACACAA+TGG + Chr4:87037366-87037385 None:intergenic 25.0%
!! TTGTCACCATTTTCATATTT+TGG - Chr4:87038557-87038576 MsG0480023571.01.T01:intron 25.0%
!!! AAGTATTTTTATATGGCATC+TGG - Chr4:87037137-87037156 MsG0480023571.01.T01:intron 25.0%
!!! CTAATTCTAAAGCTTAATCA+TGG - Chr4:87038991-87039010 MsG0480023571.01.T01:intron 25.0%
!!! GCACATTGTTATTTTACTTT+TGG - Chr4:87039855-87039874 MsG0480023571.01.T01:CDS 25.0%
!!! GCTTTTAAAATTGAAAGAAC+AGG + Chr4:87038185-87038204 None:intergenic 25.0%
!!! GGGTATCAAGTATTTTTATA+TGG - Chr4:87037130-87037149 MsG0480023571.01.T01:intron 25.0%
!!! TAAATTTTAGCTTCTGTGAA+TGG + Chr4:87037674-87037693 None:intergenic 25.0%
!!! TCATATACAATTTTGGCAAA+TGG + Chr4:87038329-87038348 None:intergenic 25.0%
!!! TTAACTGTTTTAGCCTTTTA+GGG - Chr4:87038842-87038861 MsG0480023571.01.T01:intron 25.0%
!!! TTTAACTGTTTTAGCCTTTT+AGG - Chr4:87038841-87038860 MsG0480023571.01.T01:intron 25.0%
AAAAGACTAAAGATTAGGGA+TGG - Chr4:87039456-87039475 MsG0480023571.01.T01:intron 30.0%
AAAGACCGTAGAAAAAGAAA+CGG + Chr4:87037536-87037555 None:intergenic 30.0%
AAAGGCTAAAACAGTTAAAG+AGG + Chr4:87038840-87038859 None:intergenic 30.0%
AAATAAGTAAGATACCTTGC+GGG + Chr4:87036409-87036428 None:intergenic 30.0%
AACCAAATTTACACTCTTTC+AGG - Chr4:87038291-87038310 MsG0480023571.01.T01:intron 30.0%
AAGATGAATTCAAAAGAGCT+TGG - Chr4:87036739-87036758 MsG0480023571.01.T01:intron 30.0%
AAGATTCACTTAGCAAAGTT+AGG + Chr4:87037803-87037822 None:intergenic 30.0%
ACTTAAATTCCAAGCTTTCT+AGG - Chr4:87036856-87036875 MsG0480023571.01.T01:intron 30.0%
AGCCTAAAAGACTAAAGATT+AGG - Chr4:87039451-87039470 MsG0480023571.01.T01:intron 30.0%
AGTTATCATGAAAAGAGAGT+AGG + Chr4:87038001-87038020 None:intergenic 30.0%
ATAAGCAGTTAGAACTTAGA+AGG - Chr4:87037109-87037128 MsG0480023571.01.T01:intron 30.0%
ATCAACTTCATAAAGAGGAA+TGG + Chr4:87039113-87039132 None:intergenic 30.0%
ATGAATTATATGCTGGCATA+TGG - Chr4:87038881-87038900 MsG0480023571.01.T01:intron 30.0%
ATTGTATATGATTACATGGG+AGG - Chr4:87038338-87038357 MsG0480023571.01.T01:CDS 30.0%
CAATAATGCAGCATCATTAA+AGG + Chr4:87037580-87037599 None:intergenic 30.0%
CACTCCCTATACATATATAA+AGG + Chr4:87037189-87037208 None:intergenic 30.0%
CATTTGCAGCAAAAAAGAAA+AGG + Chr4:87038223-87038242 None:intergenic 30.0%
CGGTTTAATACTTATTTGCA+AGG + Chr4:87039536-87039555 None:intergenic 30.0%
CTCAACATGTTGAAGAAAAA+GGG - Chr4:87036802-87036821 MsG0480023571.01.T01:intron 30.0%
CTTCTGAATAGTGAATACAT+AGG - Chr4:87038610-87038629 MsG0480023571.01.T01:intron 30.0%
GAAATAAGTAAGATACCTTG+CGG + Chr4:87036410-87036429 None:intergenic 30.0%
GATGGAAATGAATTATATGC+TGG - Chr4:87038874-87038893 MsG0480023571.01.T01:intron 30.0%
GATTGCTAGTCCAATTAAAA+AGG - Chr4:87036777-87036796 MsG0480023571.01.T01:intron 30.0%
GCCTAAAAGACTAAAGATTA+GGG - Chr4:87039452-87039471 MsG0480023571.01.T01:intron 30.0%
GTTAAAACTTGACACCTAAT+AGG + Chr4:87038035-87038054 None:intergenic 30.0%
GTTATCATGAAAAGAGAGTA+GGG + Chr4:87038000-87038019 None:intergenic 30.0%
GTTCTAACTGCTTATAACTT+TGG + Chr4:87037104-87037123 None:intergenic 30.0%
TAAGCAGTTAGAACTTAGAA+GGG - Chr4:87037110-87037129 MsG0480023571.01.T01:intron 30.0%
TAATCTACCAACCATACATT+AGG + Chr4:87039776-87039795 None:intergenic 30.0%
TATAATGTTTACCTTGTAGG+AGG - Chr4:87036922-87036941 MsG0480023571.01.T01:intron 30.0%
TATTCACTATTCAGAAGAGT+AGG + Chr4:87038607-87038626 None:intergenic 30.0%
TCAGTATCAACTTCATAAAG+AGG + Chr4:87039118-87039137 None:intergenic 30.0%
TCTCAACATGTTGAAGAAAA+AGG - Chr4:87036801-87036820 MsG0480023571.01.T01:intron 30.0%
TGAATGGAAAATACAAGGTT+GGG + Chr4:87037658-87037677 None:intergenic 30.0%
TTATCATGAAAAGAGAGTAG+GGG + Chr4:87037999-87038018 None:intergenic 30.0%
TTCTGTGAATGGAAAATACA+AGG + Chr4:87037663-87037682 None:intergenic 30.0%
TTGAGGCTATTATGGAAATT+TGG - Chr4:87038920-87038939 MsG0480023571.01.T01:intron 30.0%
TTTGCAGCAAAAAAGAAAAG+GGG + Chr4:87038221-87038240 None:intergenic 30.0%
! AACCAAACTTTTACATCACA+TGG - Chr4:87039832-87039851 MsG0480023571.01.T01:CDS 30.0%
! AACCTGAAAGAGTGTAAATT+TGG + Chr4:87038296-87038315 None:intergenic 30.0%
! AATGGTTACCAAAAGCATAT+TGG + Chr4:87039095-87039114 None:intergenic 30.0%
! ACCAAACTTTTACATCACAT+GGG - Chr4:87039833-87039852 MsG0480023571.01.T01:CDS 30.0%
! AGAAGCTCAAATCTAAAACA+AGG - Chr4:87036547-87036566 MsG0480023571.01.T01:intron 30.0%
! AGATTCCGTTTCTTTTTCTA+CGG - Chr4:87037528-87037547 MsG0480023571.01.T01:intron 30.0%
! CAAAAGAACCAATATGCTTT+TGG - Chr4:87039084-87039103 MsG0480023571.01.T01:intron 30.0%
! GTCTTCTGTCTCTTTTTAAT+AGG + Chr4:87039702-87039721 None:intergenic 30.0%
! TCTGGTTAGTTATCTTTACT+GGG - Chr4:87037956-87037975 MsG0480023571.01.T01:CDS 30.0%
! TTAAACTAACTCAGAAGTGT+TGG - Chr4:87039191-87039210 MsG0480023571.01.T01:intron 30.0%
!! TCCCTAATCTTTAGTCTTTT+AGG + Chr4:87039456-87039475 None:intergenic 30.0%
!! TTTAATTGGACTAGCAATCA+TGG + Chr4:87036776-87036795 None:intergenic 30.0%
!!! TGTAATTTTTTTCCGCTTCT+AGG - Chr4:87036480-87036499 MsG0480023571.01.T01:intron 30.0%
AAACTTGACACCTAATAGGA+AGG + Chr4:87038031-87038050 None:intergenic 35.0%
AAATTCCAAGCTTTCTAGGT+CGG - Chr4:87036860-87036879 MsG0480023571.01.T01:intron 35.0%
AACTTGACACCTAATAGGAA+GGG + Chr4:87038030-87038049 None:intergenic 35.0%
AAGATGTTTAACAGAACGAG+CGG + Chr4:87038722-87038741 None:intergenic 35.0%
AATATGTCACGTCATATGGA+TGG - Chr4:87037884-87037903 MsG0480023571.01.T01:intron 35.0%
AATGGTAGGTAACAATGAAG+GGG + Chr4:87037348-87037367 None:intergenic 35.0%
ACAATGGTAGGTAACAATGA+AGG + Chr4:87037350-87037369 None:intergenic 35.0%
ACACTTTGCTCATGATATTG+AGG - Chr4:87038078-87038097 MsG0480023571.01.T01:intron 35.0%
ACATTGACGAGGATATTATG+TGG - Chr4:87038806-87038825 MsG0480023571.01.T01:intron 35.0%
ACTTATTCTCCCTTCCTATT+AGG - Chr4:87038018-87038037 MsG0480023571.01.T01:intron 35.0%
AGAATCATCAACTACCTGAA+AGG + Chr4:87038966-87038985 None:intergenic 35.0%
AGATATTCTTCTTCCCTTTC+AGG - Chr4:87038949-87038968 MsG0480023571.01.T01:intron 35.0%
AGTTCTTGCAAGGTTATACA+AGG - Chr4:87039366-87039385 MsG0480023571.01.T01:intron 35.0%
ATATGATTACATGGGAGGAA+TGG - Chr4:87038343-87038362 MsG0480023571.01.T01:CDS 35.0%
ATCCATATGACGTGACATAT+TGG + Chr4:87037885-87037904 None:intergenic 35.0%
ATGCATGATATTGAGTTCCT+TGG - Chr4:87039559-87039578 MsG0480023571.01.T01:intron 35.0%
CAATGGTAGGTAACAATGAA+GGG + Chr4:87037349-87037368 None:intergenic 35.0%
CACTGCCCAAAATATGAAAA+TGG + Chr4:87038566-87038585 None:intergenic 35.0%
CAGTAAAGATAACTAACCAG+AGG + Chr4:87037957-87037976 None:intergenic 35.0%
CTCATTTAACTGGGTCAAAA+TGG + Chr4:87037623-87037642 None:intergenic 35.0%
GAATCATCAACTACCTGAAA+GGG + Chr4:87038965-87038984 None:intergenic 35.0%
GAGCTTCTATAACATTCATC+TGG + Chr4:87036535-87036554 None:intergenic 35.0%
GGGTATAATGTTTACCTTGT+AGG - Chr4:87036919-87036938 MsG0480023571.01.T01:intron 35.0%
GTGAATGGAAAATACAAGGT+TGG + Chr4:87037659-87037678 None:intergenic 35.0%
TACGATATATCCTCAGGTAT+TGG + Chr4:87039587-87039606 None:intergenic 35.0%
TCCATATGACGTGACATATT+GGG + Chr4:87037884-87037903 None:intergenic 35.0%
TCCTCAATTTGGATAACCTT+TGG - Chr4:87039899-87039918 MsG0480023571.01.T01:CDS 35.0%
TCCTTTGCAAACTAAACCAT+TGG - Chr4:87037388-87037407 MsG0480023571.01.T01:intron 35.0%
TTCCATAATAGCCTCAAAGA+AGG + Chr4:87038917-87038936 None:intergenic 35.0%
TTGCAGCAAAAAAGAAAAGG+GGG + Chr4:87038220-87038239 None:intergenic 35.0%
TTTGCTTTAGTATCATGTCC+CGG + Chr4:87036954-87036973 None:intergenic 35.0%
! AGGTGATGAGAACATTTTCA+TGG - Chr4:87037835-87037854 MsG0480023571.01.T01:intron 35.0%
! CTCTGGTTAGTTATCTTTAC+TGG - Chr4:87037955-87037974 MsG0480023571.01.T01:CDS 35.0%
! CTGGTTAGTTATCTTTACTG+GGG - Chr4:87037957-87037976 MsG0480023571.01.T01:CDS 35.0%
! GAATTTTGTGACACAATGGT+AGG + Chr4:87037362-87037381 None:intergenic 35.0%
! GGGTTTGCAGACTAATTTTA+AGG + Chr4:87036349-87036368 None:intergenic 35.0%
! TTCAAGTTACGAACAGCAAA+TGG - Chr4:87039723-87039742 MsG0480023571.01.T01:intron 35.0%
! TTCTCAATCTGTTTTACCTC+TGG - Chr4:87037938-87037957 MsG0480023571.01.T01:CDS 35.0%
! TTTTCATGGTGTGAGATAGT+TGG - Chr4:87037849-87037868 MsG0480023571.01.T01:intron 35.0%
!! AACCTTCTTTGAGGCTATTA+TGG - Chr4:87038912-87038931 MsG0480023571.01.T01:intron 35.0%
!! ACTTCTTTTCAAGAGGATTG+TGG - Chr4:87038497-87038516 MsG0480023571.01.T01:intron 35.0%
!! AGGTTTGTTGCTCATTTAAC+TGG + Chr4:87037633-87037652 None:intergenic 35.0%
!! CAGTTTGCTTTTGACATTAC+AGG - Chr4:87039024-87039043 MsG0480023571.01.T01:intron 35.0%
!! GGTTTGTTGCTCATTTAACT+GGG + Chr4:87037632-87037651 None:intergenic 35.0%
!! TAACTTTGGCTCTTGATCTA+CGG + Chr4:87037090-87037109 None:intergenic 35.0%
!! TCCAATGGTTTAGTTTGCAA+AGG + Chr4:87037392-87037411 None:intergenic 35.0%
!!! ATTCGAGTATTTTTAGGGTC+TGG - Chr4:87039655-87039674 MsG0480023571.01.T01:intron 35.0%
AACCTTAAAGGACCAAGATC+AGG + Chr4:87039243-87039262 None:intergenic 40.0%
AATTAGAATTGCTGCTCGCT+TGG - Chr4:87038676-87038695 MsG0480023571.01.T01:intron 40.0%
ACGAGGATATTATGTGGCTT+AGG - Chr4:87038812-87038831 MsG0480023571.01.T01:intron 40.0%
AGACTAAAGATTAGGGATGG+AGG - Chr4:87039459-87039478 MsG0480023571.01.T01:intron 40.0%
AGGACGAAGATGAAGAAGAT+TGG + Chr4:87036370-87036389 None:intergenic 40.0%
AGTTACGAACAGCAAATGGA+AGG - Chr4:87039727-87039746 MsG0480023571.01.T01:intron 40.0%
ATCCTGATCTTGGTCCTTTA+AGG - Chr4:87039238-87039257 MsG0480023571.01.T01:intron 40.0%
ATCTTGGTACAACCTAGAAG+CGG + Chr4:87036495-87036514 None:intergenic 40.0%
ATTAGAATTGCTGCTCGCTT+GGG - Chr4:87038677-87038696 MsG0480023571.01.T01:intron 40.0%
CAATGACCAAGTGTTCTCAT+CGG + Chr4:87037215-87037234 None:intergenic 40.0%
GAATTCATCTTCTTCCATGC+TGG + Chr4:87036730-87036749 None:intergenic 40.0%
GACTAAAGATTAGGGATGGA+GGG - Chr4:87039460-87039479 MsG0480023571.01.T01:intron 40.0%
GATGAGTACGATATATCCTC+AGG + Chr4:87039593-87039612 None:intergenic 40.0%
GCAAGGATTATGTAAAGGCT+GGG + Chr4:87039519-87039538 None:intergenic 40.0%
GCAGTCTTTCTTCCTCAATT+TGG - Chr4:87039888-87039907 MsG0480023571.01.T01:CDS 40.0%
GCCAAAGGTTATCCAAATTG+AGG + Chr4:87039903-87039922 None:intergenic 40.0%
GCCCATGTGATGTAAAAGTT+TGG + Chr4:87039837-87039856 None:intergenic 40.0%
GGAAATTGAGTTATAGGCAC+TGG - Chr4:87037703-87037722 MsG0480023571.01.T01:intron 40.0%
GGACGAAGATGAAGAAGATT+GGG + Chr4:87036369-87036388 None:intergenic 40.0%
GTTACGAACAGCAAATGGAA+GGG - Chr4:87039728-87039747 MsG0480023571.01.T01:intron 40.0%
TAAATAAGAAGGCTCCAGCA+TGG - Chr4:87036713-87036732 MsG0480023571.01.T01:intron 40.0%
TACCATAAGCTGCTATGACA+CGG + Chr4:87039938-87039957 None:intergenic 40.0%
TATATGCTGGCATATGGATC+TGG - Chr4:87038887-87038906 MsG0480023571.01.T01:intron 40.0%
TATGGATGGTATCATCGTTG+AGG - Chr4:87037898-87037917 MsG0480023571.01.T01:intron 40.0%
TATGTGCGCTCAAACCTTAA+AGG + Chr4:87039255-87039274 None:intergenic 40.0%
TATTGAACAGGTCCGAACTA+TGG - Chr4:87038463-87038482 MsG0480023571.01.T01:intron 40.0%
TCCCAATATGTCACGTCATA+TGG - Chr4:87037880-87037899 MsG0480023571.01.T01:intron 40.0%
TCTTGAAAAGAAGTAGCTGC+AGG + Chr4:87038491-87038510 None:intergenic 40.0%
TGCAAGGATTATGTAAAGGC+TGG + Chr4:87039520-87039539 None:intergenic 40.0%
TGTTTAGATGGTAGCTTACC+TGG - Chr4:87037058-87037077 MsG0480023571.01.T01:intron 40.0%
TTCGTCATGGATTTCGAAGA+CGG - Chr4:87039059-87039078 MsG0480023571.01.T01:intron 40.0%
! AAGAGGATTGTGGTGAGTTT+TGG - Chr4:87038507-87038526 MsG0480023571.01.T01:intron 40.0%
! CTTTAACTTCGACATTGACG+AGG - Chr4:87038795-87038814 MsG0480023571.01.T01:intron 40.0%
! GCAGAATTCAAGTTATGCAC+TGG - Chr4:87039144-87039163 MsG0480023571.01.T01:intron 40.0%
! TTGTTGTTGTTGCTGCTGTA+GGG - Chr4:87036899-87036918 MsG0480023571.01.T01:intron 40.0%
!! CTATGGCTTTAGTTCTTGCA+AGG - Chr4:87039356-87039375 MsG0480023571.01.T01:intron 40.0%
!! GGTGTGAGATAGTTGGTAAA+AGG - Chr4:87037856-87037875 MsG0480023571.01.T01:intron 40.0%
!! TGCAGCTACTTCTTTTCAAG+AGG - Chr4:87038490-87038509 MsG0480023571.01.T01:intron 40.0%
!!! CTGTTTTAGCCTTTTAGGGT+AGG - Chr4:87038846-87038865 MsG0480023571.01.T01:intron 40.0%
AACTTCAGCGGATCTTAGAG+AGG - Chr4:87036996-87037015 MsG0480023571.01.T01:intron 45.0%
ATGCGAGCTGCAGAAAGAAA+TGG + Chr4:87038647-87038666 None:intergenic 45.0%
CATCAGAAGCCTACCCTAAA+AGG + Chr4:87038858-87038877 None:intergenic 45.0%
CTTGATCTACGGAGTAATCC+AGG + Chr4:87037079-87037098 None:intergenic 45.0%
GAAAAATAATTCCCCCACCC+TGG + Chr4:87039754-87039773 None:intergenic 45.0%
GATCTGGTGAACCTTCTTTG+AGG - Chr4:87038903-87038922 MsG0480023571.01.T01:intron 45.0%
GATGGTATCATCGTTGAGGT+TGG - Chr4:87037902-87037921 MsG0480023571.01.T01:CDS 45.0%
GGAAAATACAAGGTTGGGAG+AGG + Chr4:87037653-87037672 None:intergenic 45.0%
TAGCTGCAGGAACCATAGTT+CGG + Chr4:87038478-87038497 None:intergenic 45.0%
TCGCTCTATCATCCTGATCT+TGG - Chr4:87039228-87039247 MsG0480023571.01.T01:intron 45.0%
TCGTCATGGATTTCGAAGAC+GGG - Chr4:87039060-87039079 MsG0480023571.01.T01:intron 45.0%
TCTTTACTGGGGTGATTGCT+AGG - Chr4:87037968-87037987 MsG0480023571.01.T01:intron 45.0%
TGCTATGACACGGAACTGTT+AGG + Chr4:87039928-87039947 None:intergenic 45.0%
TTAGAATTGCTGCTCGCTTG+GGG - Chr4:87038678-87038697 MsG0480023571.01.T01:intron 45.0%
TTCCGTGTCATAGCAGCTTA+TGG - Chr4:87039933-87039952 MsG0480023571.01.T01:CDS 45.0%
TTCCTTGGTTCCAATACCTG+AGG - Chr4:87039574-87039593 MsG0480023571.01.T01:intron 45.0%
TTGGGCAGTGTAAACTTCCT+CGG - Chr4:87038576-87038595 MsG0480023571.01.T01:intron 45.0%
! ATCTGGCTCAACAGAAGGTA+CGG + Chr4:87036518-87036537 None:intergenic 45.0%
! CATGATATTGAGGCACCCAA+GGG - Chr4:87038088-87038107 MsG0480023571.01.T01:intron 45.0%
! CATTCATCTGGCTCAACAGA+AGG + Chr4:87036523-87036542 None:intergenic 45.0%
! GCTCGTTACTTTGTTCGTCA+TGG - Chr4:87039046-87039065 MsG0480023571.01.T01:intron 45.0%
! GTTGTTGTTGTTGCTGCTGT+AGG - Chr4:87036898-87036917 MsG0480023571.01.T01:intron 45.0%
! TCAACAGAAGGTACGGATCT+TGG + Chr4:87036511-87036530 None:intergenic 45.0%
! TCATGAGCAAAGTGTCTACC+AGG + Chr4:87038073-87038092 None:intergenic 45.0%
! TCATGATATTGAGGCACCCA+AGG - Chr4:87038087-87038106 MsG0480023571.01.T01:intron 45.0%
!! ATCCTCAGGTATTGGAACCA+AGG + Chr4:87039579-87039598 None:intergenic 45.0%
!!! CTTTTAGGGTAGGCTTCTGA+TGG - Chr4:87038856-87038875 MsG0480023571.01.T01:intron 45.0%
!! AAATAAATTTATTAAATCTA+TGG - Chr4:87039339-87039358 MsG0480023571.01.T01:CDS 5.0%
AACACTGCCAAATGCAAGCC+TGG - Chr4:87038052-87038071 MsG0480023571.01.T01:intron 50.0%
AACAGCAAATGGAAGGGCCA+GGG - Chr4:87039734-87039753 MsG0480023571.01.T01:intron 50.0%
AAGATACCTTGCGGGCACAT+TGG + Chr4:87036401-87036420 None:intergenic 50.0%
ACAAGGAGGACTATCTTCGC+TGG - Chr4:87038116-87038135 MsG0480023571.01.T01:intron 50.0%
ACCTTGTAGGAGGTTGTGTC+CGG - Chr4:87036932-87036951 MsG0480023571.01.T01:intron 50.0%
AGATACCTTGCGGGCACATT+GGG + Chr4:87036400-87036419 None:intergenic 50.0%
CAGAAGAGTAGGTATGTCCG+AGG + Chr4:87038596-87038615 None:intergenic 50.0%
CGAGCTGCAGAAAGAAATGG+AGG + Chr4:87038644-87038663 None:intergenic 50.0%
CGGAACTGTTAGGAAGCCAA+AGG + Chr4:87039918-87039937 None:intergenic 50.0%
GGTAGGTAACAATGAAGGGG+AGG + Chr4:87037345-87037364 None:intergenic 50.0%
GGTTACCGACCTAGAAAGCT+TGG + Chr4:87036868-87036887 None:intergenic 50.0%
GTGACTCCGATGAGAACACT+TGG - Chr4:87037206-87037225 MsG0480023571.01.T01:intron 50.0%
GTGTCTACCAGGCTTGCATT+TGG + Chr4:87038062-87038081 None:intergenic 50.0%
TCCTCCTTGTCACATCCCTT+GGG + Chr4:87038106-87038125 None:intergenic 50.0%
! GGATGGAGGGAGTATGTGTT+TGG - Chr4:87039473-87039492 MsG0480023571.01.T01:intron 50.0%
ACCCAAGGGATGTGACAAGG+AGG - Chr4:87038102-87038121 MsG0480023571.01.T01:intron 55.0%
AGGAGGACTATCTTCGCTGG+AGG - Chr4:87038119-87038138 MsG0480023571.01.T01:CDS 55.0%
CCTTGTAGGAGGTTGTGTCC+GGG - Chr4:87036933-87036952 MsG0480023571.01.T01:intron 55.0%
GAACAGCAAATGGAAGGGCC+AGG - Chr4:87039733-87039752 MsG0480023571.01.T01:intron 55.0%
GTCCTCCTTGTCACATCCCT+TGG + Chr4:87038107-87038126 None:intergenic 55.0%
AAATGGAAGGGCCAGGGTGG+GGG - Chr4:87039740-87039759 MsG0480023571.01.T01:intron 60.0%
ACCTTGCGGGCACATTGGGA+TGG + Chr4:87036396-87036415 None:intergenic 60.0%
AGCAAATGGAAGGGCCAGGG+TGG - Chr4:87039737-87039756 MsG0480023571.01.T01:intron 60.0%
CAAATGGAAGGGCCAGGGTG+GGG - Chr4:87039739-87039758 MsG0480023571.01.T01:intron 60.0%
CCCGGACACAACCTCCTACA+AGG + Chr4:87036936-87036955 None:intergenic 60.0%
CCTTGCGGGCACATTGGGAT+GGG + Chr4:87036395-87036414 None:intergenic 60.0%
CGGGCACATTGGGATGGGAT+AGG + Chr4:87036390-87036409 None:intergenic 60.0%
GCAAATGGAAGGGCCAGGGT+GGG - Chr4:87039738-87039757 MsG0480023571.01.T01:intron 60.0%
GGCACCCAAGGGATGTGACA+AGG - Chr4:87038099-87038118 MsG0480023571.01.T01:intron 60.0%
CCCATCCCAATGTGCCCGCA+AGG - Chr4:87036392-87036411 MsG0480023571.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 87036333 87039958 87036333 ID=MsG0480023571.01;Name=MsG0480023571.01
Chr4 mRNA 87036333 87039958 87036333 ID=MsG0480023571.01.T01;Parent=MsG0480023571.01;Name=MsG0480023571.01.T01;_AED=0.48;_eAED=0.53;_QI=0|0.33|0.42|1|0.33|0.28|7|0|230
Chr4 exon 87039811 87039958 87039811 ID=MsG0480023571.01.T01:exon:3211;Parent=MsG0480023571.01.T01
Chr4 exon 87039274 87039371 87039274 ID=MsG0480023571.01.T01:exon:3210;Parent=MsG0480023571.01.T01
Chr4 exon 87038332 87038454 87038332 ID=MsG0480023571.01.T01:exon:3209;Parent=MsG0480023571.01.T01
Chr4 exon 87038118 87038251 87038118 ID=MsG0480023571.01.T01:exon:3208;Parent=MsG0480023571.01.T01
Chr4 exon 87037902 87037978 87037902 ID=MsG0480023571.01.T01:exon:3207;Parent=MsG0480023571.01.T01
Chr4 exon 87037773 87037818 87037773 ID=MsG0480023571.01.T01:exon:3206;Parent=MsG0480023571.01.T01
Chr4 exon 87036333 87036399 87036333 ID=MsG0480023571.01.T01:exon:3205;Parent=MsG0480023571.01.T01
Chr4 CDS 87039811 87039958 87039811 ID=MsG0480023571.01.T01:cds;Parent=MsG0480023571.01.T01
Chr4 CDS 87039274 87039371 87039274 ID=MsG0480023571.01.T01:cds;Parent=MsG0480023571.01.T01
Chr4 CDS 87038332 87038454 87038332 ID=MsG0480023571.01.T01:cds;Parent=MsG0480023571.01.T01
Chr4 CDS 87038118 87038251 87038118 ID=MsG0480023571.01.T01:cds;Parent=MsG0480023571.01.T01
Chr4 CDS 87037902 87037978 87037902 ID=MsG0480023571.01.T01:cds;Parent=MsG0480023571.01.T01
Chr4 CDS 87037773 87037818 87037773 ID=MsG0480023571.01.T01:cds;Parent=MsG0480023571.01.T01
Chr4 CDS 87036333 87036399 87036333 ID=MsG0480023571.01.T01:cds;Parent=MsG0480023571.01.T01
Gene Sequence

>MsG0480023571.01.T01

ATGGCAATTTCGACCTTAAAATTAGTCTGCAAACCCAATCTTCTTCATCTTCGTCCTATCCCATCCCAATGTGCCCGCAAGGTATCTTACTTATTTCTCAACATTCAACTTAATTCTTCGCATTCATTTTTTTTTTTTGTTGAATTTTGGTATAATGTTTACCTTGTAGGAGGTTGTGTCCGGGACATGATACTAAAGCAAACGCCAAAAGATTTTGATATTTTAACTTCAGCGGATCTTAGAGAGGTGATGAGAACATTTTCATGGTGTGAGATAGTTGGTAAAAGGTTCCCAATATGTCACGTCATATGGATGGTATCATCGTTGAGGTTGGTGTATTCCTATGTTTCTCAATCTGTTTTACCTCTGGTGTCAAGTTTTAACACTGCCAAATGCAAGCCTGGTAGACACTTTGCTCATGATATTGAGGCACCCAAGGGATGTGACAAGGAGGACTATCTTCGCTGGAGGAATTGCTTGAATAGAGATTTTACAATTAATGGGTTCATGTTTGATCCATTTGCCAAAATTGTATATGATTACATGGGAGGAATGGAAGATATTATAAAAGCTAAAGTGCGTCCGAACTATGGTTCCTGCAGCTACTTCTTTTCAAGAGGATTGTGTCTTTCTTCCTCAATTTGGATAACCTTTGGCTTCCTAACAGTTCCGTGTCATAGCAGCTTATGGTAA
Protein sequence

>MsG0480023571.01.T01

MAISTLKLVCKPNLLHLRPIPSQCARKVSYLFLNIQLNSSHSFFFFVEFWYNVYLVGGCVRDMILKQTPKDFDILTSADLREVMRTFSWCEIVGKRFPICHVIWMVSSLRLVYSYVSQSVLPLVSSFNTAKCKPGRHFAHDIEAPKGCDKEDYLRWRNCLNRDFTINGFMFDPFAKIVYDYMGGMEDIIKAKVRPNYGSCSYFFSRGLCLSSSIWITFGFLTVPCHSSLW*