AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041747.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041747.01.T01 MTR_7g117270 91.509 530 39 2 1 524 1 530 0.0 895
MsG0780041747.01.T01 MTR_3g083350 39.329 328 178 5 100 414 71 390 9.47e-65 220
MsG0780041747.01.T01 MTR_3g105530 33.248 391 218 8 109 480 60 426 6.73e-52 182
MsG0780041747.01.T01 MTR_1g072550 36.152 343 201 8 80 414 30 362 6.09e-48 171
MsG0780041747.01.T01 MTR_1g032040 35.756 344 203 8 80 415 30 363 7.84e-48 171
MsG0780041747.01.T01 MTR_1g032380 35.756 344 203 8 80 415 30 363 7.84e-48 171
MsG0780041747.01.T01 MTR_3g074730 34.731 334 199 6 91 416 63 385 4.46e-47 169
MsG0780041747.01.T01 MTR_6g033595 31.178 433 260 14 73 477 36 458 6.73e-44 162
MsG0780041747.01.T01 MTR_8g089370 30.914 372 236 6 64 425 16 376 5.74e-43 157
MsG0780041747.01.T01 MTR_7g088530 31.157 337 219 6 85 418 46 372 8.43e-38 144
MsG0780041747.01.T01 MTR_2g067960 30.549 419 236 15 106 491 34 430 1.26e-37 144
MsG0780041747.01.T01 MTR_1g019170 33.688 282 161 6 133 410 71 330 3.69e-37 142
MsG0780041747.01.T01 MTR_0153s0070 29.799 349 210 7 46 375 3 335 9.74e-37 139
MsG0780041747.01.T01 MTR_3g029990 33.000 300 173 7 115 410 55 330 1.30e-36 144
MsG0780041747.01.T01 MTR_3g029990 33.000 300 173 7 115 410 55 330 1.38e-36 144
MsG0780041747.01.T01 MTR_0153s0070 30.390 385 195 9 109 473 37 368 4.08e-36 138
MsG0780041747.01.T01 MTR_7g107280 27.228 404 268 8 83 475 30 418 2.93e-35 137
MsG0780041747.01.T01 MTR_3g030020 33.088 272 156 6 143 410 38 287 1.05e-34 134
MsG0780041747.01.T01 MTR_1g098960 32.979 282 163 6 133 410 73 332 3.14e-34 134
MsG0780041747.01.T01 MTR_4g053720 29.360 344 211 9 72 398 10 338 2.88e-30 121
MsG0780041747.01.T01 MTR_3g063230 26.316 399 265 11 74 457 41 425 1.08e-29 121
MsG0780041747.01.T01 MTR_7g018630 27.177 379 235 10 47 414 27 375 2.86e-27 114
MsG0780041747.01.T01 MTR_3g448960 29.787 282 147 7 133 410 73 307 3.27e-24 105
MsG0780041747.01.T01 MTR_6g043850 26.894 264 180 4 140 399 82 336 1.18e-23 105
MsG0780041747.01.T01 MTR_3g063230 25.189 397 248 11 74 457 41 401 2.97e-23 102
MsG0780041747.01.T01 MTR_8g102038 29.146 199 113 6 161 344 53 238 1.68e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041747.01.T01 AT4G01037 63.974 458 154 3 78 524 71 528 0.0 555
MsG0780041747.01.T01 AT5G62990 39.118 340 179 6 91 414 65 392 5.11e-72 238
MsG0780041747.01.T01 AT3G63090 35.079 382 222 11 42 415 3 366 8.37e-50 176
MsG0780041747.01.T01 AT5G48040 30.100 402 250 6 79 472 33 411 8.93e-49 174
MsG0780041747.01.T01 AT4G08940 34.650 329 199 8 92 416 72 388 1.45e-44 162
MsG0780041747.01.T01 AT5G21970 33.228 316 190 4 104 410 74 377 1.20e-43 160
MsG0780041747.01.T01 AT5G21970 33.228 316 190 4 104 410 74 377 1.20e-43 160
MsG0780041747.01.T01 AT4G33495 32.320 362 212 12 91 431 52 401 5.32e-43 158
MsG0780041747.01.T01 AT1G79120 29.851 335 217 5 91 414 68 395 8.78e-41 152
MsG0780041747.01.T01 AT1G79120 29.851 335 217 5 91 414 68 395 8.78e-41 152
MsG0780041747.01.T01 AT2G31290 30.030 333 209 7 86 414 29 341 9.23e-40 149
MsG0780041747.01.T01 AT2G31290 30.030 333 209 7 86 414 29 341 9.23e-40 149
MsG0780041747.01.T01 AT3G58520 29.191 346 228 5 91 426 41 379 1.56e-37 143
MsG0780041747.01.T01 AT1G06440 29.589 365 231 11 82 432 31 383 1.72e-37 142
MsG0780041747.01.T01 AT5G45790 29.819 332 222 6 85 414 68 390 2.20e-33 132
MsG0780041747.01.T01 AT3G58520 30.717 293 188 4 144 426 80 367 2.22e-33 131
MsG0780041747.01.T01 AT5G45790 29.470 302 203 5 114 414 13 305 4.07e-29 118
MsG0780041747.01.T01 AT4G24320 29.167 360 230 9 79 427 19 364 4.65e-29 119
MsG0780041747.01.T01 AT1G71850 25.542 415 280 10 67 474 13 405 9.61e-29 119
MsG0780041747.01.T01 AT2G39120 27.485 342 231 6 79 414 25 355 1.46e-27 114

Find 105 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCAAATTGGTTCCCAAAAT+TGG 0.029340 7:-94667447 None:intergenic
CTCTTCACAACAGCACTTAT+TGG 0.167023 7:-94667525 None:intergenic
GTGAAGTTTGAGAGAAAATT+TGG 0.186340 7:-94667408 None:intergenic
GGGCATTTGGCGAATGATTT+AGG 0.190368 7:+94667915 MsG0780041747.01.T01:CDS
CGATTGAAACAAACGCAAAT+TGG 0.251560 7:-94667460 None:intergenic
GTTATGTCTCTTCAGGAATT+AGG 0.265530 7:+94667645 MsG0780041747.01.T01:CDS
AAAGAAATATAAAACATATC+AGG 0.269809 7:-94668407 None:intergenic
AGGTAAGTATAGAAGAGAAT+TGG 0.310601 7:+94667665 MsG0780041747.01.T01:CDS
TCAAGATTACCACCGTTCTC+TGG 0.326785 7:-94668852 None:intergenic
TACTCAGATTTCTCTATGAT+TGG 0.332939 7:+94668230 MsG0780041747.01.T01:CDS
GTTAGAGAAAATTGGGCATT+TGG 0.343668 7:+94667902 MsG0780041747.01.T01:CDS
ACAGGGATTCTGTGTTCCTT+AGG 0.353477 7:+94668438 MsG0780041747.01.T01:CDS
TCTGAGTAAGGCGATATATA+AGG 0.364252 7:-94668215 None:intergenic
TAGTAGGGTTATGTCTCTTC+AGG 0.364761 7:+94667638 MsG0780041747.01.T01:CDS
CGTTCTCTGGGACGACCATC+AGG 0.372597 7:-94668839 None:intergenic
GGTAAGTATAGAAGAGAATT+GGG 0.380116 7:+94667666 MsG0780041747.01.T01:CDS
GCAAATTGGTTCCCAAAATT+GGG 0.384407 7:-94667446 None:intergenic
AGCAGAATTTAATTATAGAT+AGG 0.391261 7:+94668105 MsG0780041747.01.T01:CDS
GAAGTAAGAGATAATTGTTT+AGG 0.403841 7:-94667300 None:intergenic
TACTAGTGAGTAAGCCTAGT+AGG 0.410002 7:+94667622 MsG0780041747.01.T01:CDS
GCCTCCTCGTCATCAAAATC+TGG 0.415372 7:-94668728 None:intergenic
TTCGCGACACCATTTGTCAT+AGG 0.422027 7:+94667952 MsG0780041747.01.T01:CDS
AAAGTTGTTCAGACTGAAAG+AGG 0.431002 7:+94667990 MsG0780041747.01.T01:CDS
GTGTTTGAGATTGTGGAAGA+TGG 0.438846 7:+94667738 MsG0780041747.01.T01:CDS
TGCACTTGAATTAACACATT+GGG 0.442420 7:+94668016 MsG0780041747.01.T01:CDS
AGCTTTATCTTGAAGAATTG+AGG 0.442851 7:+94667802 MsG0780041747.01.T01:CDS
GGACAGATTGTTACTTGTAA+AGG 0.447014 7:+94668493 MsG0780041747.01.T01:CDS
TTTGAAAGATTAAGACCCTT+AGG 0.447819 7:-94668155 None:intergenic
CAGGGATTCTGTGTTCCTTA+GGG 0.456981 7:+94668439 MsG0780041747.01.T01:CDS
CGACCGGCACCCCTACCCTT+AGG 0.457781 7:-94668551 None:intergenic
TCCTGGTGTGTTTGAGATTG+TGG 0.459381 7:+94667731 MsG0780041747.01.T01:CDS
TGATATTCCACGATTTCCTA+AGG 0.460152 7:+94668535 MsG0780041747.01.T01:CDS
ATCTTGAAGAATTGAGGGTT+AGG 0.461053 7:+94667808 MsG0780041747.01.T01:CDS
CTCTGGATACCTATGACAAA+TGG 0.461089 7:-94667961 None:intergenic
AAGGGTCTTAATCTTTCAAA+AGG 0.467749 7:+94668158 MsG0780041747.01.T01:CDS
GCTTTATCTTGAAGAATTGA+GGG 0.468992 7:+94667803 MsG0780041747.01.T01:CDS
ATATTTCTTTGAAAGGAGAC+AGG 0.471443 7:+94668420 MsG0780041747.01.T01:CDS
TCCACGATTTCCTAAGGGTA+GGG 0.472983 7:+94668541 MsG0780041747.01.T01:CDS
AGCTTTACTCTATTAAACTT+AGG 0.478690 7:-94668131 None:intergenic
TTTCCTAAGGGTAGGGGTGC+CGG 0.484180 7:+94668548 MsG0780041747.01.T01:CDS
GCAGAATTTAATTATAGATA+GGG 0.485320 7:+94668106 MsG0780041747.01.T01:CDS
CAAGATTACCACCGTTCTCT+GGG 0.485705 7:-94668851 None:intergenic
TAATAGAGTAAAGCTTCCTA+AGG 0.486104 7:+94668139 MsG0780041747.01.T01:CDS
ATTGAGGGTTAGGAATGAAA+TGG 0.486805 7:+94667818 MsG0780041747.01.T01:CDS
CGCAAAACAGAATAATGAAA+AGG 0.489822 7:+94668799 MsG0780041747.01.T01:CDS
GTATAGAAGAGAATTGGGTT+TGG 0.491370 7:+94667671 MsG0780041747.01.T01:CDS
AATTGAGAGGGATGTTGATA+AGG 0.491946 7:+94668381 MsG0780041747.01.T01:CDS
TGTTTGAGATTGTGGAAGAT+GGG 0.492902 7:+94667739 MsG0780041747.01.T01:CDS
CACTAGAGATGGAGATGGGA+TGG 0.495270 7:+94668574 MsG0780041747.01.T01:CDS
ATCATAGAGAAATCTGAGTA+AGG 0.496079 7:-94668227 None:intergenic
CAATCGAATTCATCACATGT+TGG 0.496950 7:+94667477 MsG0780041747.01.T01:CDS
TGAAGAGACATAACCCTACT+AGG 0.498867 7:-94667636 None:intergenic
GGAGATGGGATGGGAGAGAG+TGG 0.498956 7:+94668584 MsG0780041747.01.T01:CDS
ATGTTGTTGTTACTAAGCTT+AGG 0.506899 7:+94667844 MsG0780041747.01.T01:CDS
ATCGGAAATTGAAAAGAGAA+AGG 0.507965 7:+94668757 MsG0780041747.01.T01:CDS
GAGTGGTATTGATAGCAGAC+AGG 0.519479 7:+94668601 MsG0780041747.01.T01:CDS
CGATTCTCACAGCAATTGAG+AGG 0.523207 7:+94668368 MsG0780041747.01.T01:CDS
AAGAAATATAAAACATATCA+GGG 0.531896 7:-94668406 None:intergenic
CAATGTGTTAATTCAAGTGC+AGG 0.536567 7:-94668014 None:intergenic
CTTGTTCCATCATTCCCTGA+TGG 0.538863 7:+94668824 MsG0780041747.01.T01:CDS
GAAATTGTTGATGATGCCGT+TGG 0.539200 7:+94667866 MsG0780041747.01.T01:CDS
GGACGACCATCAGGGAATGA+TGG 0.544132 7:-94668830 None:intergenic
GATAGCAGACAGGGTGAAAG+TGG 0.546366 7:+94668611 MsG0780041747.01.T01:CDS
TGAAATTTGTTCTCAAAGTG+AGG 0.546830 7:+94667595 MsG0780041747.01.T01:CDS
GAAATTTAGAATGACTTCTG+AGG 0.553098 7:+94667773 MsG0780041747.01.T01:CDS
TGCGGCCGAGCTGTCTGCGG+AGG 0.560311 7:+94668058 MsG0780041747.01.T01:CDS
ATCTCCATCTCTAGTGCGAC+CGG 0.562041 7:-94668567 None:intergenic
CTGATGGTCGTCCCAGAGAA+CGG 0.562404 7:+94668840 MsG0780041747.01.T01:CDS
CCACGATTTCCTAAGGGTAG+GGG 0.563389 7:+94668542 MsG0780041747.01.T01:CDS
GGTGCCGGTCGCACTAGAGA+TGG 0.563534 7:+94668563 MsG0780041747.01.T01:CDS
AGCTTATCGAGATTCTCAGT+TGG 0.565019 7:+94668463 MsG0780041747.01.T01:CDS
TTCTGCGGCCGAGCTGTCTG+CGG 0.565854 7:+94668055 MsG0780041747.01.T01:CDS
ACGTTGATATCGATGATGAC+TGG 0.572623 7:+94668666 MsG0780041747.01.T01:CDS
ACTAGTGAGTAAGCCTAGTA+GGG 0.573985 7:+94667623 MsG0780041747.01.T01:CDS
GGTCGCACTAGAGATGGAGA+TGG 0.574172 7:+94668569 MsG0780041747.01.T01:CDS
CTGCACTTGAATTAACACAT+TGG 0.577423 7:+94668015 MsG0780041747.01.T01:CDS
GGAGAATCGAATTAGAGAAG+TGG 0.581481 7:+94668079 MsG0780041747.01.T01:CDS
ATCTTTCAAAAGGTGAGATG+AGG 0.582454 7:+94668168 MsG0780041747.01.T01:CDS
TCCTCAGCTTGCAGTTTCTG+CGG 0.583709 7:+94668040 MsG0780041747.01.T01:CDS
CGAATTCATCACATGTTGGT+GGG 0.587576 7:+94667481 MsG0780041747.01.T01:CDS
ACAGGGTGAAAGTGGTGAAG+AGG 0.591661 7:+94668619 MsG0780041747.01.T01:CDS
ACTAGAGATGGAGATGGGAT+GGG 0.598288 7:+94668575 MsG0780041747.01.T01:CDS
TCCTCGTCATCAAAATCTGG+TGG 0.598862 7:-94668725 None:intergenic
CCCCTACCCTTAGGAAATCG+TGG 0.600344 7:-94668542 None:intergenic
GCCGCAGAAACTGCAAGCTG+AGG 0.600466 7:-94668041 None:intergenic
GTCGCACTAGAGATGGAGAT+GGG 0.602787 7:+94668570 MsG0780041747.01.T01:CDS
GATTCTCACAGCAATTGAGA+GGG 0.608241 7:+94668369 MsG0780041747.01.T01:CDS
TATTTCTTTGAAAGGAGACA+GGG 0.614001 7:+94668421 MsG0780041747.01.T01:CDS
AATAGAGTAAAGCTTCCTAA+GGG 0.615219 7:+94668140 MsG0780041747.01.T01:CDS
ATTCTCCTCCGCAGACAGCT+CGG 0.615702 7:-94668063 None:intergenic
TCGAATTCATCACATGTTGG+TGG 0.617506 7:+94667480 MsG0780041747.01.T01:CDS
TGACGAGGAGGCAGAAACAT+CGG 0.622570 7:+94668739 MsG0780041747.01.T01:CDS
AATCTCGATAAGCTTCCCTA+AGG 0.627558 7:-94668454 None:intergenic
GATATTCCACGATTTCCTAA+GGG 0.627966 7:+94668536 MsG0780041747.01.T01:CDS
AGTGGTATTGATAGCAGACA+GGG 0.632538 7:+94668602 MsG0780041747.01.T01:CDS
GTGGTGAAGAGGAACAAGAA+TGG 0.632592 7:+94668630 MsG0780041747.01.T01:CDS
CATCAGGGAATGATGGAACA+AGG 0.636284 7:-94668823 None:intergenic
AGATTCTCAGTTGGTAGACA+AGG 0.639646 7:+94668472 MsG0780041747.01.T01:CDS
TGATGATGCCGTTGGAAAAG+CGG 0.641358 7:+94667874 MsG0780041747.01.T01:CDS
GTTCTCTGGGACGACCATCA+GGG 0.643365 7:-94668838 None:intergenic
TCCACAATCTCAAACACACC+AGG 0.645713 7:-94667732 None:intergenic
TATGATTGGTTTGAACACGC+CGG 0.658259 7:+94668244 MsG0780041747.01.T01:CDS
TTCCACGATTTCCTAAGGGT+AGG 0.664321 7:+94668540 MsG0780041747.01.T01:CDS
ATGGTGTCGCGAAATTCTCG+AGG 0.669888 7:-94667942 None:intergenic
ATGGTCGTCCCAGAGAACGG+TGG 0.738040 7:+94668843 MsG0780041747.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAAATATAAAACATATC+AGG - Chr7:94668410-94668429 None:intergenic 15.0%
!! AAGAAATATAAAACATATCA+GGG - Chr7:94668409-94668428 None:intergenic 15.0%
!!! ATGTTTTATATTTCTTTGAA+AGG + Chr7:94668413-94668432 MsG0780041747.01.T01:CDS 15.0%
!!! GAAAATTAATTGTAATTTTG+AGG + Chr7:94667703-94667722 MsG0780041747.01.T01:CDS 15.0%
!!! GGTATAATTTTATTAAATCT+GGG - Chr7:94667507-94667526 None:intergenic 15.0%
!!! TGGTATAATTTTATTAAATC+TGG - Chr7:94667508-94667527 None:intergenic 15.0%
!! AGCAGAATTTAATTATAGAT+AGG + Chr7:94668105-94668124 MsG0780041747.01.T01:CDS 20.0%
!! GCAGAATTTAATTATAGATA+GGG + Chr7:94668106-94668125 MsG0780041747.01.T01:CDS 20.0%
!!! AGTTTATTTGAGATGAAAAA+AGG - Chr7:94667372-94667391 None:intergenic 20.0%
!!! TTTTGAATCACATTATCAAA+TGG - Chr7:94667564-94667583 None:intergenic 20.0%
! AGCTTTACTCTATTAAACTT+AGG - Chr7:94668134-94668153 None:intergenic 25.0%
! GAAGTAAGAGATAATTGTTT+AGG - Chr7:94667303-94667322 None:intergenic 25.0%
! TTGAGATGAAAAAAGGTAAA+GGG - Chr7:94667365-94667384 None:intergenic 25.0%
!! GGATTTTGTTAGAGAAAATT+GGG + Chr7:94667895-94667914 MsG0780041747.01.T01:CDS 25.0%
!! TGAACAACTTTAAAAAACTC+TGG - Chr7:94667981-94668000 None:intergenic 25.0%
!! TTTGAGATGAAAAAAGGTAA+AGG - Chr7:94667366-94667385 None:intergenic 25.0%
AAGGGTCTTAATCTTTCAAA+AGG + Chr7:94668158-94668177 MsG0780041747.01.T01:CDS 30.0%
AATAGAGTAAAGCTTCCTAA+GGG + Chr7:94668140-94668159 MsG0780041747.01.T01:CDS 30.0%
AGGTAAGTATAGAAGAGAAT+TGG + Chr7:94667665-94667684 MsG0780041747.01.T01:CDS 30.0%
ATCATAGAGAAATCTGAGTA+AGG - Chr7:94668230-94668249 None:intergenic 30.0%
ATCGGAAATTGAAAAGAGAA+AGG + Chr7:94668757-94668776 MsG0780041747.01.T01:CDS 30.0%
CGCAAAACAGAATAATGAAA+AGG + Chr7:94668799-94668818 MsG0780041747.01.T01:CDS 30.0%
GAAGATGAAAAAGAGAGTTT+GGG - Chr7:94667327-94667346 None:intergenic 30.0%
GCTTTATCTTGAAGAATTGA+GGG + Chr7:94667803-94667822 MsG0780041747.01.T01:CDS 30.0%
GGTAAGTATAGAAGAGAATT+GGG + Chr7:94667666-94667685 MsG0780041747.01.T01:CDS 30.0%
GTGAAGTTTGAGAGAAAATT+TGG - Chr7:94667411-94667430 None:intergenic 30.0%
TAATAGAGTAAAGCTTCCTA+AGG + Chr7:94668139-94668158 MsG0780041747.01.T01:CDS 30.0%
TACTCAGATTTCTCTATGAT+TGG + Chr7:94668230-94668249 MsG0780041747.01.T01:CDS 30.0%
TGAAGATGAAAAAGAGAGTT+TGG - Chr7:94667328-94667347 None:intergenic 30.0%
TGAGATGAAAAAAGGTAAAG+GGG - Chr7:94667364-94667383 None:intergenic 30.0%
TGCACTTGAATTAACACATT+GGG + Chr7:94668016-94668035 MsG0780041747.01.T01:CDS 30.0%
TTTGAAAGATTAAGACCCTT+AGG - Chr7:94668158-94668177 None:intergenic 30.0%
! AGCTTTATCTTGAAGAATTG+AGG + Chr7:94667802-94667821 MsG0780041747.01.T01:CDS 30.0%
! ATATTTCTTTGAAAGGAGAC+AGG + Chr7:94668420-94668439 MsG0780041747.01.T01:CDS 30.0%
! ATGTTGTTGTTACTAAGCTT+AGG + Chr7:94667844-94667863 MsG0780041747.01.T01:CDS 30.0%
! CCAAAATTGGGATTTTTGAA+GGG - Chr7:94667437-94667456 None:intergenic 30.0%
! CCTTCAAAAATCCCAATTTT+GGG + Chr7:94667435-94667454 MsG0780041747.01.T01:CDS 30.0%
! CGGATTTTGTTAGAGAAAAT+TGG + Chr7:94667894-94667913 MsG0780041747.01.T01:CDS 30.0%
! GAAATTTAGAATGACTTCTG+AGG + Chr7:94667773-94667792 MsG0780041747.01.T01:CDS 30.0%
! TATTTCTTTGAAAGGAGACA+GGG + Chr7:94668421-94668440 MsG0780041747.01.T01:CDS 30.0%
! TGAAATTTGTTCTCAAAGTG+AGG + Chr7:94667595-94667614 MsG0780041747.01.T01:CDS 30.0%
AAAGGAAAAACTTCGTTCGT+TGG + Chr7:94668511-94668530 MsG0780041747.01.T01:CDS 35.0%
AAAGTTGTTCAGACTGAAAG+AGG + Chr7:94667990-94668009 MsG0780041747.01.T01:CDS 35.0%
AATTGAGAGGGATGTTGATA+AGG + Chr7:94668381-94668400 MsG0780041747.01.T01:CDS 35.0%
ATCTTGAAGAATTGAGGGTT+AGG + Chr7:94667808-94667827 MsG0780041747.01.T01:CDS 35.0%
ATCTTTCAAAAGGTGAGATG+AGG + Chr7:94668168-94668187 MsG0780041747.01.T01:CDS 35.0%
ATTGAGGGTTAGGAATGAAA+TGG + Chr7:94667818-94667837 MsG0780041747.01.T01:CDS 35.0%
CAATCGAATTCATCACATGT+TGG + Chr7:94667477-94667496 MsG0780041747.01.T01:CDS 35.0%
CAATGTGTTAATTCAAGTGC+AGG - Chr7:94668017-94668036 None:intergenic 35.0%
CGATTGAAACAAACGCAAAT+TGG - Chr7:94667463-94667482 None:intergenic 35.0%
CTGCACTTGAATTAACACAT+TGG + Chr7:94668015-94668034 MsG0780041747.01.T01:CDS 35.0%
GATATTCCACGATTTCCTAA+GGG + Chr7:94668536-94668555 MsG0780041747.01.T01:CDS 35.0%
GTATAGAAGAGAATTGGGTT+TGG + Chr7:94667671-94667690 MsG0780041747.01.T01:CDS 35.0%
GTTAGAGAAAATTGGGCATT+TGG + Chr7:94667902-94667921 MsG0780041747.01.T01:CDS 35.0%
GTTATGTCTCTTCAGGAATT+AGG + Chr7:94667645-94667664 MsG0780041747.01.T01:CDS 35.0%
TCTGAGTAAGGCGATATATA+AGG - Chr7:94668218-94668237 None:intergenic 35.0%
TGATATTCCACGATTTCCTA+AGG + Chr7:94668535-94668554 MsG0780041747.01.T01:CDS 35.0%
! CCCAAAATTGGGATTTTTGA+AGG - Chr7:94667438-94667457 None:intergenic 35.0%
! CCCTTCAAAAATCCCAATTT+TGG + Chr7:94667434-94667453 MsG0780041747.01.T01:CDS 35.0%
! GCAAATTGGTTCCCAAAATT+GGG - Chr7:94667449-94667468 None:intergenic 35.0%
! GGACAGATTGTTACTTGTAA+AGG + Chr7:94668493-94668512 MsG0780041747.01.T01:CDS 35.0%
! TGTTTGAGATTGTGGAAGAT+GGG + Chr7:94667739-94667758 MsG0780041747.01.T01:CDS 35.0%
!! AACAAAATCCGCTTTTCCAA+CGG - Chr7:94667885-94667904 None:intergenic 35.0%
!! AATTGGGATTTTTGAAGGGA+AGG - Chr7:94667433-94667452 None:intergenic 35.0%
!! GTAATTTTGAGGAGATTTCC+TGG + Chr7:94667714-94667733 MsG0780041747.01.T01:CDS 35.0%
!! TAACTTCACTCATTTTCGAG+AGG + Chr7:94668340-94668359 MsG0780041747.01.T01:CDS 35.0%
AATCTCGATAAGCTTCCCTA+AGG - Chr7:94668457-94668476 None:intergenic 40.0%
ACGTTGATATCGATGATGAC+TGG + Chr7:94668666-94668685 MsG0780041747.01.T01:CDS 40.0%
ACTAGTGAGTAAGCCTAGTA+GGG + Chr7:94667623-94667642 MsG0780041747.01.T01:CDS 40.0%
AGCTTATCGAGATTCTCAGT+TGG + Chr7:94668463-94668482 MsG0780041747.01.T01:CDS 40.0%
CGAATTCATCACATGTTGGT+GGG + Chr7:94667481-94667500 MsG0780041747.01.T01:CDS 40.0%
CTCTGGATACCTATGACAAA+TGG - Chr7:94667964-94667983 None:intergenic 40.0%
CTCTTCACAACAGCACTTAT+TGG - Chr7:94667528-94667547 None:intergenic 40.0%
GATTCTCACAGCAATTGAGA+GGG + Chr7:94668369-94668388 MsG0780041747.01.T01:CDS 40.0%
GGAGAATCGAATTAGAGAAG+TGG + Chr7:94668079-94668098 MsG0780041747.01.T01:CDS 40.0%
TACTAGTGAGTAAGCCTAGT+AGG + Chr7:94667622-94667641 MsG0780041747.01.T01:CDS 40.0%
TAGTAGGGTTATGTCTCTTC+AGG + Chr7:94667638-94667657 MsG0780041747.01.T01:CDS 40.0%
TCGAATTCATCACATGTTGG+TGG + Chr7:94667480-94667499 MsG0780041747.01.T01:CDS 40.0%
TGAAGAGACATAACCCTACT+AGG - Chr7:94667639-94667658 None:intergenic 40.0%
! CAAGCATGCTTCTCTTTTTC+CGG - Chr7:94668266-94668285 None:intergenic 40.0%
! CGCAAATTGGTTCCCAAAAT+TGG - Chr7:94667450-94667469 None:intergenic 40.0%
! GAAAAAGAGAAGCATGCTTG+TGG + Chr7:94668266-94668285 MsG0780041747.01.T01:CDS 40.0%
! GTGTTTGAGATTGTGGAAGA+TGG + Chr7:94667738-94667757 MsG0780041747.01.T01:CDS 40.0%
!! AGATTCTCAGTTGGTAGACA+AGG + Chr7:94668472-94668491 MsG0780041747.01.T01:CDS 40.0%
!! AGTGGTATTGATAGCAGACA+GGG + Chr7:94668602-94668621 MsG0780041747.01.T01:CDS 40.0%
!! GAAATTGTTGATGATGCCGT+TGG + Chr7:94667866-94667885 MsG0780041747.01.T01:CDS 40.0%
!! TATGATTGGTTTGAACACGC+CGG + Chr7:94668244-94668263 MsG0780041747.01.T01:CDS 40.0%
ACAGGGATTCTGTGTTCCTT+AGG + Chr7:94668438-94668457 MsG0780041747.01.T01:CDS 45.0%
ACTAGAGATGGAGATGGGAT+GGG + Chr7:94668575-94668594 MsG0780041747.01.T01:CDS 45.0%
CAGGGATTCTGTGTTCCTTA+GGG + Chr7:94668439-94668458 MsG0780041747.01.T01:CDS 45.0%
CGATTCTCACAGCAATTGAG+AGG + Chr7:94668368-94668387 MsG0780041747.01.T01:CDS 45.0%
CTTGTTCCATCATTCCCTGA+TGG + Chr7:94668824-94668843 MsG0780041747.01.T01:CDS 45.0%
GGGCATTTGGCGAATGATTT+AGG + Chr7:94667915-94667934 MsG0780041747.01.T01:CDS 45.0%
GTGGTGAAGAGGAACAAGAA+TGG + Chr7:94668630-94668649 MsG0780041747.01.T01:CDS 45.0%
TCCACAATCTCAAACACACC+AGG - Chr7:94667735-94667754 None:intergenic 45.0%
TCCACGATTTCCTAAGGGTA+GGG + Chr7:94668541-94668560 MsG0780041747.01.T01:CDS 45.0%
TCCTCGTCATCAAAATCTGG+TGG - Chr7:94668728-94668747 None:intergenic 45.0%
TTCCACGATTTCCTAAGGGT+AGG + Chr7:94668540-94668559 MsG0780041747.01.T01:CDS 45.0%
TTCGCGACACCATTTGTCAT+AGG + Chr7:94667952-94667971 MsG0780041747.01.T01:CDS 45.0%
! CATCAGGGAATGATGGAACA+AGG - Chr7:94668826-94668845 None:intergenic 45.0%
! TCCTGGTGTGTTTGAGATTG+TGG + Chr7:94667731-94667750 MsG0780041747.01.T01:CDS 45.0%
! TGATGATGCCGTTGGAAAAG+CGG + Chr7:94667874-94667893 MsG0780041747.01.T01:CDS 45.0%
!! GAGTGGTATTGATAGCAGAC+AGG + Chr7:94668601-94668620 MsG0780041747.01.T01:CDS 45.0%
!!! ACCACCAGATTTTGATGACG+AGG + Chr7:94668724-94668743 MsG0780041747.01.T01:CDS 45.0%
!!! ACCAGATTTTGATGACGAGG+AGG + Chr7:94668727-94668746 MsG0780041747.01.T01:CDS 45.0%
ACAGGGTGAAAGTGGTGAAG+AGG + Chr7:94668619-94668638 MsG0780041747.01.T01:CDS 50.0%
ATCTCCATCTCTAGTGCGAC+CGG - Chr7:94668570-94668589 None:intergenic 50.0%
CACTAGAGATGGAGATGGGA+TGG + Chr7:94668574-94668593 MsG0780041747.01.T01:CDS 50.0%
CCACGATTTCCTAAGGGTAG+GGG + Chr7:94668542-94668561 MsG0780041747.01.T01:CDS 50.0%
GATAGCAGACAGGGTGAAAG+TGG + Chr7:94668611-94668630 MsG0780041747.01.T01:CDS 50.0%
GCCTCCTCGTCATCAAAATC+TGG - Chr7:94668731-94668750 None:intergenic 50.0%
GTCGCACTAGAGATGGAGAT+GGG + Chr7:94668570-94668589 MsG0780041747.01.T01:CDS 50.0%
TCCTCAGCTTGCAGTTTCTG+CGG + Chr7:94668040-94668059 MsG0780041747.01.T01:CDS 50.0%
TGACGAGGAGGCAGAAACAT+CGG + Chr7:94668739-94668758 MsG0780041747.01.T01:CDS 50.0%
!! ATGGTGTCGCGAAATTCTCG+AGG - Chr7:94667945-94667964 None:intergenic 50.0%
ATTCTCCTCCGCAGACAGCT+CGG - Chr7:94668066-94668085 None:intergenic 55.0%
CCCCTACCCTTAGGAAATCG+TGG - Chr7:94668545-94668564 None:intergenic 55.0%
CTGATGGTCGTCCCAGAGAA+CGG + Chr7:94668840-94668859 MsG0780041747.01.T01:CDS 55.0%
GGACGACCATCAGGGAATGA+TGG - Chr7:94668833-94668852 None:intergenic 55.0%
GGTCGCACTAGAGATGGAGA+TGG + Chr7:94668569-94668588 MsG0780041747.01.T01:CDS 55.0%
! TTTCCTAAGGGTAGGGGTGC+CGG + Chr7:94668548-94668567 MsG0780041747.01.T01:CDS 55.0%
!! GTTCTCTGGGACGACCATCA+GGG - Chr7:94668841-94668860 None:intergenic 55.0%
ATGGTCGTCCCAGAGAACGG+TGG + Chr7:94668843-94668862 MsG0780041747.01.T01:CDS 60.0%
GCCGCAGAAACTGCAAGCTG+AGG - Chr7:94668044-94668063 None:intergenic 60.0%
GGAGATGGGATGGGAGAGAG+TGG + Chr7:94668584-94668603 MsG0780041747.01.T01:CDS 60.0%
!! CGTTCTCTGGGACGACCATC+AGG - Chr7:94668842-94668861 None:intergenic 60.0%
TTCTGCGGCCGAGCTGTCTG+CGG + Chr7:94668055-94668074 MsG0780041747.01.T01:CDS 65.0%
!! GGTGCCGGTCGCACTAGAGA+TGG + Chr7:94668563-94668582 MsG0780041747.01.T01:CDS 65.0%
CGACCGGCACCCCTACCCTT+AGG - Chr7:94668554-94668573 None:intergenic 70.0%
TGCGGCCGAGCTGTCTGCGG+AGG + Chr7:94668058-94668077 MsG0780041747.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr7 gene 94667294 94668868 94667294 ID=MsG0780041747.01;Name=MsG0780041747.01
Chr7 mRNA 94667294 94668868 94667294 ID=MsG0780041747.01.T01;Parent=MsG0780041747.01;Name=MsG0780041747.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|524
Chr7 exon 94667294 94668868 94667294 ID=MsG0780041747.01.T01:exon:22600;Parent=MsG0780041747.01.T01
Chr7 CDS 94667294 94668868 94667294 ID=MsG0780041747.01.T01:cds;Parent=MsG0780041747.01.T01
Gene Sequence

>MsG0780041747.01.T01

ATGGATCCTAAACAATTATCTCTTACTTCACCCAAACTCTCTTTTTCATCTTCATCTTCATCTTTTACCCCTTTACCTTTTTTCATCTCAAATAAACTTCAATTTCTTCAAAAACCAAATTTTCTCTCAAACTTCACCTTCCCTTCAAAAATCCCAATTTTGGGAACCAATTTGCGTTTGTTTCAATCGAATTCATCACATGTTGGTGGGCCCAGATTTAATAAAATTATACCAATAAGTGCTGTTGTGAAGAGAAGAAAAGAACTTCCATTTGATAATGTGATTCAAAAAGATAAGAAGCTGAAATTTGTTCTCAAAGTGAGGAAAATACTAGTGAGTAAGCCTAGTAGGGTTATGTCTCTTCAGGAATTAGGTAAGTATAGAAGAGAATTGGGTTTGGATAAAAAGAGAAAATTAATTGTAATTTTGAGGAGATTTCCTGGTGTGTTTGAGATTGTGGAAGATGGGTGCTACTCTTTGAAATTTAGAATGACTTCTGAGGCTGAAAAGCTTTATCTTGAAGAATTGAGGGTTAGGAATGAAATGGAAGATGTTGTTGTTACTAAGCTTAGGAAATTGTTGATGATGCCGTTGGAAAAGCGGATTTTGTTAGAGAAAATTGGGCATTTGGCGAATGATTTAGGACTTCCTCGAGAATTTCGCGACACCATTTGTCATAGGTATCCAGAGTTTTTTAAAGTTGTTCAGACTGAAAGAGGTCCTGCACTTGAATTAACACATTGGGATCCTCAGCTTGCAGTTTCTGCGGCCGAGCTGTCTGCGGAGGAGAATCGAATTAGAGAAGTGGAAGAGCAGAATTTAATTATAGATAGGGCTCCTAAGTTTAATAGAGTAAAGCTTCCTAAGGGTCTTAATCTTTCAAAAGGTGAGATGAGGAAGATAATGCAGTTTAGAGACATTCCTTATATATCGCCTTACTCAGATTTCTCTATGATTGGTTTGAACACGCCGGAAAAAGAGAAGCATGCTTGTGGAGTTATTCATGAGATTTTGAGTCTTACACTTGAGAAGCGAACTCTTGTTGATAACTTCACTCATTTTCGAGAGGAATTTCGATTCTCACAGCAATTGAGAGGGATGTTGATAAGGCACCCTGATATGTTTTATATTTCTTTGAAAGGAGACAGGGATTCTGTGTTCCTTAGGGAAGCTTATCGAGATTCTCAGTTGGTAGACAAGGACAGATTGTTACTTGTAAAGGAAAAACTTCGTTCGTTGGTTGATATTCCACGATTTCCTAAGGGTAGGGGTGCCGGTCGCACTAGAGATGGAGATGGGATGGGAGAGAGTGGTATTGATAGCAGACAGGGTGAAAGTGGTGAAGAGGAACAAGAATGGTCAGATGCTGATGACGTTGATATCGATGATGACTGGATTGATGATGAAGATGATGATGATGATGATGATACACCACCAGATTTTGATGACGAGGAGGCAGAAACATCGGAAATTGAAAAGAGAAAGGCAACTACACGAGTTCAAGACGCAAAACAGAATAATGAAAAGGTCCTTGTTCCATCATTCCCTGATGGTCGTCCCAGAGAACGGTGGTAA

Protein sequence

>MsG0780041747.01.T01

MDPKQLSLTSPKLSFSSSSSSFTPLPFFISNKLQFLQKPNFLSNFTFPSKIPILGTNLRLFQSNSSHVGGPRFNKIIPISAVVKRRKELPFDNVIQKDKKLKFVLKVRKILVSKPSRVMSLQELGKYRRELGLDKKRKLIVILRRFPGVFEIVEDGCYSLKFRMTSEAEKLYLEELRVRNEMEDVVVTKLRKLLMMPLEKRILLEKIGHLANDLGLPREFRDTICHRYPEFFKVVQTERGPALELTHWDPQLAVSAAELSAEENRIREVEEQNLIIDRAPKFNRVKLPKGLNLSKGEMRKIMQFRDIPYISPYSDFSMIGLNTPEKEKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDMFYISLKGDRDSVFLREAYRDSQLVDKDRLLLVKEKLRSLVDIPRFPKGRGAGRTRDGDGMGESGIDSRQGESGEEEQEWSDADDVDIDDDWIDDEDDDDDDDTPPDFDDEEAETSEIEKRKATTRVQDAKQNNEKVLVPSFPDGRPRERW*