Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029355.01.T01 | RHN57280.1 | 96.089 | 537 | 21 | 0 | 1 | 537 | 83 | 619 | 0 | 1073 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029355.01.T01 | Q9M219 | 25.73 | 548 | 381 | 10 | 3 | 535 | 19 | 555 | 2.04E-51 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029355.01.T01 | A0A396HVA9 | 96.089 | 537 | 21 | 0 | 1 | 537 | 83 | 619 | 0.0 | 1073 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000444.01 | MsG0580029355.01 | 0.811724 | 6.067098e-51 | 3.784087e-48 |
| MsG0180000546.01 | MsG0580029355.01 | 0.843054 | 1.773463e-58 | 2.740970e-55 |
| MsG0180000550.01 | MsG0580029355.01 | 0.807821 | 4.191171e-50 | 2.357784e-47 |
| MsG0180001141.01 | MsG0580029355.01 | 0.815104 | 1.096992e-51 | 7.493715e-49 |
| MsG0180001213.01 | MsG0580029355.01 | 0.826749 | 2.286417e-54 | 2.163347e-51 |
| MsG0180002458.01 | MsG0580029355.01 | 0.805711 | 1.170211e-49 | 6.234895e-47 |
| MsG0180003697.01 | MsG0580029355.01 | 0.823112 | 1.650745e-53 | 1.408388e-50 |
| MsG0180003854.01 | MsG0580029355.01 | 0.816291 | 5.963784e-52 | 4.209232e-49 |
| MsG0180004025.01 | MsG0580029355.01 | 0.806403 | 8.365167e-50 | 4.536261e-47 |
| MsG0180004780.01 | MsG0580029355.01 | 0.812900 | 3.358984e-51 | 2.161842e-48 |
| MsG0180004997.01 | MsG0580029355.01 | 0.844493 | 7.309003e-59 | 1.182049e-55 |
| MsG0180005052.01 | MsG0580029355.01 | 0.841748 | 3.936142e-58 | 5.839307e-55 |
| MsG0180005382.01 | MsG0580029355.01 | 0.814857 | 1.244525e-51 | 8.445347e-49 |
| MsG0180005686.01 | MsG0580029355.01 | 0.801516 | 8.679264e-49 | 4.153069e-46 |
| MsG0180005957.01 | MsG0580029355.01 | 0.829155 | 6.030797e-55 | 6.121267e-52 |
| MsG0180006055.01 | MsG0580029355.01 | 0.818679 | 1.728389e-52 | 1.302356e-49 |
| MsG0180006064.01 | MsG0580029355.01 | -0.801027 | 1.092762e-48 | 5.165155e-46 |
| MsG0180006220.01 | MsG0580029355.01 | 0.809080 | 2.257579e-50 | 1.312897e-47 |
| MsG0280011261.01 | MsG0580029355.01 | 0.820564 | 6.417495e-53 | 5.095459e-50 |
| MsG0280011376.01 | MsG0580029355.01 | 0.805197 | 1.499604e-49 | 7.884694e-47 |
| MsG0380011704.01 | MsG0580029355.01 | 0.810301 | 1.234108e-50 | 7.411698e-48 |
| MsG0380012310.01 | MsG0580029355.01 | 0.820693 | 5.993245e-53 | 4.775547e-50 |
| MsG0380013467.01 | MsG0580029355.01 | 0.815484 | 9.031000e-52 | 6.234699e-49 |
| MsG0380013853.01 | MsG0580029355.01 | 0.802925 | 4.451967e-49 | 2.207994e-46 |
| MsG0380014548.01 | MsG0580029355.01 | 0.812400 | 4.320337e-51 | 2.744384e-48 |
| MsG0480019126.01 | MsG0580029355.01 | 0.817944 | 2.535186e-52 | 1.871995e-49 |
| MsG0480020024.01 | MsG0580029355.01 | 0.804101 | 2.538488e-49 | 1.297594e-46 |
| MsG0480021164.01 | MsG0580029355.01 | 0.822586 | 2.187864e-53 | 1.839180e-50 |
| MsG0480022222.01 | MsG0580029355.01 | 0.829050 | 6.392761e-55 | 6.468101e-52 |
| MsG0480022739.01 | MsG0580029355.01 | -0.818110 | 2.325042e-52 | 1.724685e-49 |
| MsG0480023174.01 | MsG0580029355.01 | 0.812666 | 3.778972e-51 | 2.417232e-48 |
| MsG0480023571.01 | MsG0580029355.01 | 0.808406 | 3.145545e-50 | 1.797117e-47 |
| MsG0480023652.01 | MsG0580029355.01 | 0.852637 | 4.051306e-61 | 8.519596e-58 |
| MsG0480023747.01 | MsG0580029355.01 | 0.832155 | 1.110640e-55 | 1.230939e-52 |
| MsG0580024494.01 | MsG0580029355.01 | 0.839016 | 2.038245e-57 | 2.778445e-54 |
| MsG0580024495.01 | MsG0580029355.01 | 0.864193 | 1.450348e-64 | 4.514527e-61 |
| MsG0580025448.01 | MsG0580029355.01 | 0.813799 | 2.131658e-51 | 1.405750e-48 |
| MsG0380015216.01 | MsG0580029355.01 | 0.827142 | 1.842266e-54 | 1.763196e-51 |
| MsG0380015533.01 | MsG0580029355.01 | 0.828094 | 1.088459e-54 | 1.071126e-51 |
| MsG0380015703.01 | MsG0580029355.01 | 0.829796 | 4.211256e-55 | 4.356224e-52 |
| MsG0380015964.01 | MsG0580029355.01 | 0.882937 | 6.846521e-71 | 4.253206e-67 |
| MsG0380015965.01 | MsG0580029355.01 | 0.892418 | 1.616848e-74 | 1.476973e-70 |
| MsG0380016182.01 | MsG0580029355.01 | 0.804735 | 1.872903e-49 | 9.731785e-47 |
| MsG0380016992.01 | MsG0580029355.01 | 0.817165 | 3.798332e-52 | 2.745563e-49 |
| MsG0380017022.01 | MsG0580029355.01 | 0.808089 | 3.676442e-50 | 2.082886e-47 |
| MsG0380017023.01 | MsG0580029355.01 | 0.837838 | 4.105058e-57 | 5.398925e-54 |
| MsG0380017866.01 | MsG0580029355.01 | 0.812271 | 4.611764e-51 | 2.919190e-48 |
| MsG0480018426.01 | MsG0580029355.01 | 0.820846 | 5.526139e-53 | 4.422568e-50 |
| MsG0580028901.01 | MsG0580029355.01 | 0.820555 | 6.449119e-53 | 5.119356e-50 |
| MsG0580029355.01 | MsG0580029549.01 | 0.800602 | 1.334274e-48 | 6.238674e-46 |
| MsG0580029355.01 | MsG0680030320.01 | 0.808148 | 3.571176e-50 | 2.026455e-47 |
| MsG0580029355.01 | MsG0680030636.01 | 0.854987 | 8.531433e-62 | 1.940344e-58 |
| MsG0580029355.01 | MsG0680031334.01 | 0.804648 | 1.953002e-49 | 1.012452e-46 |
| MsG0580029355.01 | MsG0680031700.01 | 0.846235 | 2.467840e-59 | 4.219538e-56 |
| MsG0580029355.01 | MsG0680035278.01 | 0.804636 | 1.964375e-49 | 1.018002e-46 |
| MsG0580029355.01 | MsG0780036705.01 | 0.852396 | 4.745107e-61 | 9.901697e-58 |
| MsG0580029355.01 | MsG0780037082.01 | 0.802345 | 5.862312e-49 | 2.864977e-46 |
| MsG0580029355.01 | MsG0780037105.01 | 0.807337 | 5.309928e-50 | 2.949826e-47 |
| MsG0580029355.01 | MsG0780038906.01 | 0.800290 | 1.544783e-48 | 7.166122e-46 |
| MsG0580029355.01 | MsG0780039258.01 | 0.817644 | 2.963799e-52 | 2.170534e-49 |
| MsG0580029355.01 | MsG0780040867.01 | 0.801052 | 1.079872e-48 | 5.107454e-46 |
| MsG0580029355.01 | MsG0780041137.01 | 0.801106 | 1.052666e-48 | 4.985550e-46 |
| MsG0580029355.01 | MsG0780041555.01 | 0.817033 | 4.068201e-52 | 2.930066e-49 |
| MsG0580029355.01 | MsG0780041729.01 | -0.806629 | 7.498048e-50 | 4.089357e-47 |
| MsG0580029355.01 | MsG0780041747.01 | 0.838640 | 2.550323e-57 | 3.437304e-54 |
| MsG0580029355.01 | MsG0880042794.01 | 0.839094 | 1.945909e-57 | 2.659086e-54 |
| MsG0580029355.01 | MsG0880046321.01 | 0.829403 | 5.248230e-55 | 5.366372e-52 |
| MsG0580029355.01 | MsG0880046536.01 | 0.812683 | 3.747902e-51 | 2.398428e-48 |
| MsG0580029355.01 | MsG0880046930.01 | 0.868570 | 5.917483e-66 | 2.150967e-62 |
| MsG0280007763.01 | MsG0580029355.01 | 0.831740 | 1.406257e-55 | 1.539958e-52 |
| MsG0280009230.01 | MsG0580029355.01 | 0.804399 | 2.201064e-49 | 1.133703e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029355.01.T01 | MTR_5g084810 | 96.089 | 537 | 21 | 0 | 1 | 537 | 51 | 587 | 0.0 | 1071 |
| MsG0580029355.01.T01 | MTR_7g093000 | 36.122 | 526 | 326 | 4 | 13 | 529 | 39 | 563 | 3.06e-107 | 332 |
| MsG0580029355.01.T01 | MTR_8g005155 | 26.515 | 528 | 367 | 10 | 15 | 525 | 29 | 552 | 1.70e-53 | 190 |
| MsG0580029355.01.T01 | MTR_7g080620 | 24.494 | 543 | 387 | 9 | 1 | 525 | 35 | 572 | 5.11e-45 | 169 |
| MsG0580029355.01.T01 | MTR_8g080990 | 20.376 | 319 | 234 | 7 | 206 | 521 | 62 | 363 | 1.88e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029355.01.T01 | AT4G19650 | 46.705 | 516 | 273 | 2 | 18 | 533 | 79 | 592 | 4.10e-169 | 492 |
| MsG0580029355.01.T01 | AT4G19650 | 44.595 | 518 | 283 | 3 | 18 | 533 | 60 | 575 | 1.01e-155 | 457 |
| MsG0580029355.01.T01 | AT5G45113 | 42.823 | 418 | 233 | 2 | 118 | 533 | 1 | 414 | 3.28e-114 | 345 |
| MsG0580029355.01.T01 | AT5G06810 | 35.161 | 529 | 341 | 2 | 3 | 531 | 55 | 581 | 2.23e-105 | 328 |
| MsG0580029355.01.T01 | AT5G06811 | 36.452 | 513 | 319 | 3 | 26 | 531 | 65 | 577 | 8.59e-101 | 316 |
| MsG0580029355.01.T01 | AT3G60400 | 25.730 | 548 | 381 | 10 | 3 | 535 | 19 | 555 | 2.08e-52 | 187 |
| MsG0580029355.01.T01 | AT5G45115 | 47.692 | 65 | 34 | 0 | 7 | 71 | 58 | 122 | 3.25e-11 | 61.2 |
| MsG0580029355.01.T01 | AT5G45115 | 47.692 | 65 | 34 | 0 | 7 | 71 | 58 | 122 | 3.25e-11 | 61.2 |
Find 88 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGAGAAAGAGCGGGAATT+TGG | 0.207920 | 5:+95915390 | None:intergenic |
| TTGAGCAAACATTCGATAAA+AGG | 0.208563 | 5:-95914450 | MsG0580029355.01.T01:CDS |
| TTGTGACCCGCTTATTAAAT+TGG | 0.211062 | 5:-95914298 | MsG0580029355.01.T01:CDS |
| AAAAGGTTCAAATTCGTTAA+TGG | 0.216359 | 5:+95915163 | None:intergenic |
| ATTTCAAGATTATGAAGATT+TGG | 0.259240 | 5:-95914943 | MsG0580029355.01.T01:CDS |
| CTTGCTGAAACTAGGGTATA+TGG | 0.266036 | 5:-95914262 | MsG0580029355.01.T01:CDS |
| TTTGAATTACATTTCTCTTC+AGG | 0.267697 | 5:+95914094 | None:intergenic |
| GAATTGGGATTGAGAGTAAA+TGG | 0.269440 | 5:-95914818 | MsG0580029355.01.T01:CDS |
| ATTCTGCATAAATCAGCTTT+TGG | 0.277612 | 5:+95914396 | None:intergenic |
| CTTGATTGGTTGAAAAGAAT+TGG | 0.282428 | 5:-95914834 | MsG0580029355.01.T01:CDS |
| CTCTTCAGGATTAGAATCTT+AGG | 0.284996 | 5:+95914108 | None:intergenic |
| TGCCAGATTGTTGGACCTTC+AGG | 0.287973 | 5:+95913856 | None:intergenic |
| TCCATTGGAGCTTATTAGTT+TGG | 0.288063 | 5:-95914361 | MsG0580029355.01.T01:CDS |
| TTTCAAGATTATGAAGATTT+GGG | 0.302755 | 5:-95914942 | MsG0580029355.01.T01:CDS |
| AAAGGTTCAAATTCGTTAAT+GGG | 0.316048 | 5:+95915164 | None:intergenic |
| GTGGCGCGTTTGATGTAAAT+TGG | 0.317940 | 5:+95915368 | None:intergenic |
| AGGAATTAATCACACGGAAT+TGG | 0.320142 | 5:-95915129 | MsG0580029355.01.T01:CDS |
| AGGAAGCTGTTCTTGTTTCT+AGG | 0.327574 | 5:-95914648 | MsG0580029355.01.T01:CDS |
| ATCGTCAGGGATGTTGATTT+TGG | 0.327979 | 5:+95915229 | None:intergenic |
| TGTTTGTTGTCCTTTGCTTT+TGG | 0.333098 | 5:-95914889 | MsG0580029355.01.T01:CDS |
| TGGAGAAAGAGCGGGAATTT+GGG | 0.341540 | 5:+95915391 | None:intergenic |
| AGAGCGGTTTGTAAGGAGTT+AGG | 0.349298 | 5:-95914423 | MsG0580029355.01.T01:CDS |
| AGTTTGTTGTTGTTCTTGAT+TGG | 0.351137 | 5:-95914848 | MsG0580029355.01.T01:CDS |
| TTTAATAAGCGGGTCACAAT+AGG | 0.351904 | 5:+95914302 | None:intergenic |
| TTTCATGTATTGTGTTATCA+TGG | 0.353729 | 5:-95915047 | MsG0580029355.01.T01:CDS |
| AGGGAGAGGTGATCAGTTAC+AGG | 0.358936 | 5:-95914199 | MsG0580029355.01.T01:CDS |
| TTGATTGGTTGAAAAGAATT+GGG | 0.361761 | 5:-95914833 | MsG0580029355.01.T01:CDS |
| CAAAGAAAATAACAACCTTT+AGG | 0.370775 | 5:+95915095 | None:intergenic |
| TATCTCACAAGACATTCTAT+TGG | 0.371889 | 5:+95914036 | None:intergenic |
| GAAGCAGTAAAATTGTTTCC+AGG | 0.374900 | 5:-95914219 | MsG0580029355.01.T01:CDS |
| CTGCCTCGTAGAAGCTGGTT+TGG | 0.378167 | 5:-95914166 | MsG0580029355.01.T01:CDS |
| TTTATACGTTGCCAGATTGT+TGG | 0.388911 | 5:+95913847 | None:intergenic |
| TGGGTATGGAAATGGAGTTT+TGG | 0.409236 | 5:-95914973 | MsG0580029355.01.T01:CDS |
| ATCCTGAAGGTCCAACAATC+TGG | 0.424676 | 5:-95913858 | MsG0580029355.01.T01:CDS |
| TCTAGGTCGGTTTATTAAGT+CGG | 0.428427 | 5:-95914631 | MsG0580029355.01.T01:CDS |
| ATCTCACAAGACATTCTATT+GGG | 0.431195 | 5:+95914037 | None:intergenic |
| AGGTTATAGAGCGGTTTGTA+AGG | 0.431374 | 5:-95914430 | MsG0580029355.01.T01:CDS |
| CGGCTTTCTTGCTGAAACTA+GGG | 0.439594 | 5:-95914269 | MsG0580029355.01.T01:CDS |
| GCTTATTAAATTGGAGAAAA+CGG | 0.440222 | 5:-95914289 | MsG0580029355.01.T01:CDS |
| CTAGGTCGGTTTATTAAGTC+GGG | 0.441636 | 5:-95914630 | MsG0580029355.01.T01:CDS |
| TGATCAGTTACAGGAGAGAT+TGG | 0.453405 | 5:-95914190 | MsG0580029355.01.T01:CDS |
| TTCATGTATTGTGTTATCAT+GGG | 0.455291 | 5:-95915046 | MsG0580029355.01.T01:CDS |
| AGACCTTCCAACAACAAATT+CGG | 0.457193 | 5:+95914675 | None:intergenic |
| ACACTTACTCGACAATATAT+CGG | 0.459640 | 5:+95914566 | None:intergenic |
| CATATGTATGATTTGTTCAA+GGG | 0.474363 | 5:-95914702 | MsG0580029355.01.T01:CDS |
| ACGGCTTTCTTGCTGAAACT+AGG | 0.474798 | 5:-95914270 | MsG0580029355.01.T01:CDS |
| ATCTTCGCCATTCGATTCCT+CGG | 0.482527 | 5:+95915020 | None:intergenic |
| TTCAATGTATGAGTGGTTGA+AGG | 0.494343 | 5:-95913968 | MsG0580029355.01.T01:CDS |
| ACATATGTATGATTTGTTCA+AGG | 0.498470 | 5:-95914703 | MsG0580029355.01.T01:CDS |
| GATCCGAATTTGTTGTTGGA+AGG | 0.498949 | 5:-95914678 | MsG0580029355.01.T01:CDS |
| AGCTGTTCTTGTTTCTAGGT+CGG | 0.500050 | 5:-95914644 | MsG0580029355.01.T01:CDS |
| TTGGACTGCCTCGTAGAAGC+TGG | 0.500999 | 5:-95914171 | MsG0580029355.01.T01:CDS |
| CTAGTTCTAGCACTTATAGC+TGG | 0.504313 | 5:-95914779 | MsG0580029355.01.T01:CDS |
| TGTATGAGTGGTTGAAGGAA+AGG | 0.504426 | 5:-95913963 | MsG0580029355.01.T01:CDS |
| ATTTGTTGTTGGAAGGTCTA+GGG | 0.509859 | 5:-95914671 | MsG0580029355.01.T01:CDS |
| TATGGAAAACTCTGAGGAGA+TGG | 0.511741 | 5:-95914244 | MsG0580029355.01.T01:CDS |
| AATTTGTTGTTGGAAGGTCT+AGG | 0.516290 | 5:-95914672 | MsG0580029355.01.T01:CDS |
| GTAAAATTGTTTCCAGGGAG+AGG | 0.518160 | 5:-95914213 | MsG0580029355.01.T01:CDS |
| GTAAATTGGTGGAGAAAGAG+CGG | 0.528173 | 5:+95915382 | None:intergenic |
| TCATGTATTGTGTTATCATG+GGG | 0.535058 | 5:-95915045 | MsG0580029355.01.T01:CDS |
| AAGCAGTAAAATTGTTTCCA+GGG | 0.543083 | 5:-95914218 | MsG0580029355.01.T01:CDS |
| ATGAGGAAATTGATGAAATG+TGG | 0.545861 | 5:+95915254 | None:intergenic |
| AATCATAAACGATAATCCAT+TGG | 0.550790 | 5:-95914376 | MsG0580029355.01.T01:CDS |
| GCCAAACTAATAAGCTCCAA+TGG | 0.553232 | 5:+95914360 | None:intergenic |
| ATATGAAACTATGGTACTCA+AGG | 0.555816 | 5:+95913918 | None:intergenic |
| AGAAAGAGCGGGAATTTGGG+TGG | 0.556121 | 5:+95915394 | None:intergenic |
| TTGTAGCACTGCGATTAGAA+TGG | 0.562098 | 5:-95914142 | MsG0580029355.01.T01:CDS |
| TGTAACTGATCACCTCTCCC+TGG | 0.577413 | 5:+95914201 | None:intergenic |
| TAAATTGGTGGAGAAAGAGC+GGG | 0.577774 | 5:+95915383 | None:intergenic |
| CAGAAACATAAGAGGAGTGG+AGG | 0.579021 | 5:-95914330 | MsG0580029355.01.T01:CDS |
| TGTGTTATCATGGGGTTCCG+AGG | 0.589302 | 5:-95915037 | MsG0580029355.01.T01:CDS |
| CTTGTAAACAGAAACATAAG+AGG | 0.603544 | 5:-95914338 | MsG0580029355.01.T01:CDS |
| TGTTGTTGGAAGGTCTAGGG+AGG | 0.611420 | 5:-95914668 | MsG0580029355.01.T01:CDS |
| GCGCGTTTGATGTAAATTGG+TGG | 0.612365 | 5:+95915371 | None:intergenic |
| TTCGATAAAAGGTTATAGAG+CGG | 0.623688 | 5:-95914439 | MsG0580029355.01.T01:CDS |
| AAACAGAAACATAAGAGGAG+TGG | 0.623881 | 5:-95914333 | MsG0580029355.01.T01:CDS |
| TGGGGTTCCGAGGAATCGAA+TGG | 0.633090 | 5:-95915027 | MsG0580029355.01.T01:CDS |
| AGAAACATAAGAGGAGTGGA+GGG | 0.636056 | 5:-95914329 | MsG0580029355.01.T01:CDS |
| ATATGTATGATTTGTTCAAG+GGG | 0.636636 | 5:-95914701 | MsG0580029355.01.T01:CDS |
| ACATCACCAACCAAAAGCAA+AGG | 0.637648 | 5:+95914879 | None:intergenic |
| CAAGAGTTTCAATGTATGAG+TGG | 0.645039 | 5:-95913975 | MsG0580029355.01.T01:CDS |
| AAAATCAACATCCCTGACGA+TGG | 0.646277 | 5:-95915227 | MsG0580029355.01.T01:CDS |
| TATATTGTCGAGTAAGTGTG+TGG | 0.647992 | 5:-95914562 | MsG0580029355.01.T01:CDS |
| TTTGTGAATATGCATCCTGA+AGG | 0.654931 | 5:-95913871 | MsG0580029355.01.T01:CDS |
| AGGGTATATGGAAAACTCTG+AGG | 0.686033 | 5:-95914250 | MsG0580029355.01.T01:CDS |
| TATGTATGATTTGTTCAAGG+GGG | 0.703088 | 5:-95914700 | MsG0580029355.01.T01:CDS |
| GAGTTTAGGAATTAATCACA+CGG | 0.713083 | 5:-95915135 | MsG0580029355.01.T01:CDS |
| AATCCAAACCAGCTTCTACG+AGG | 0.736492 | 5:+95914163 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTTTCATATAATGAAAAA+CGG | - | Chr5:95915323-95915342 | MsG0580029355.01.T01:CDS | 15.0% |
| !!! | TTTTTCATTATATGAAACTA+TGG | + | Chr5:95915323-95915342 | None:intergenic | 15.0% |
| !!! | TTTTTTGTATAATATTCGAA+TGG | - | Chr5:95914712-95914731 | MsG0580029355.01.T01:CDS | 15.0% |
| !! | ATTTCAAGATTATGAAGATT+TGG | - | Chr5:95914286-95914305 | MsG0580029355.01.T01:CDS | 20.0% |
| !! | GATTTCTTAAAAAACACTTT+AGG | - | Chr5:95915166-95915185 | MsG0580029355.01.T01:CDS | 20.0% |
| !! | TTTCAAGATTATGAAGATTT+GGG | - | Chr5:95914287-95914306 | MsG0580029355.01.T01:CDS | 20.0% |
| ! | AAAAGGTTCAAATTCGTTAA+TGG | + | Chr5:95914069-95914088 | None:intergenic | 25.0% |
| ! | AAAGGTTCAAATTCGTTAAT+GGG | + | Chr5:95914068-95914087 | None:intergenic | 25.0% |
| ! | AATCATAAACGATAATCCAT+TGG | - | Chr5:95914853-95914872 | MsG0580029355.01.T01:CDS | 25.0% |
| ! | CAAAGAAAATAACAACCTTT+AGG | + | Chr5:95914137-95914156 | None:intergenic | 25.0% |
| ! | GCTTATTAAATTGGAGAAAA+CGG | - | Chr5:95914940-95914959 | MsG0580029355.01.T01:CDS | 25.0% |
| ! | TTCATGTATTGTGTTATCAT+GGG | - | Chr5:95914183-95914202 | MsG0580029355.01.T01:CDS | 25.0% |
| ! | TTGGAAAAATTTCTACCTAA+AGG | - | Chr5:95914119-95914138 | MsG0580029355.01.T01:CDS | 25.0% |
| ! | TTTCATGTATTGTGTTATCA+TGG | - | Chr5:95914182-95914201 | MsG0580029355.01.T01:CDS | 25.0% |
| ! | TTTGAATTACATTTCTCTTC+AGG | + | Chr5:95915138-95915157 | None:intergenic | 25.0% |
| !! | ATTCCTAAACTCTCTAAAAA+AGG | + | Chr5:95914086-95914105 | None:intergenic | 25.0% |
| !! | GTTTTCTCCAATTTAATAAG+CGG | + | Chr5:95914941-95914960 | None:intergenic | 25.0% |
| !! | TTGATTGGTTGAAAAGAATT+GGG | - | Chr5:95914396-95914415 | MsG0580029355.01.T01:CDS | 25.0% |
| !! | TTTTCTCCAATTTAATAAGC+GGG | + | Chr5:95914940-95914959 | None:intergenic | 25.0% |
| !!! | ACATATGTATGATTTGTTCA+AGG | - | Chr5:95914526-95914545 | MsG0580029355.01.T01:CDS | 25.0% |
| !!! | ATATGTATGATTTGTTCAAG+GGG | - | Chr5:95914528-95914547 | MsG0580029355.01.T01:CDS | 25.0% |
| !!! | CATATGTATGATTTGTTCAA+GGG | - | Chr5:95914527-95914546 | MsG0580029355.01.T01:CDS | 25.0% |
| !!! | TTAGAGTTTTTTCATCAAGT+GGG | - | Chr5:95914491-95914510 | MsG0580029355.01.T01:CDS | 25.0% |
| !!! | TTTAGAGTTTTTTCATCAAG+TGG | - | Chr5:95914490-95914509 | MsG0580029355.01.T01:CDS | 25.0% |
| AAGCAGTAAAATTGTTTCCA+GGG | - | Chr5:95915011-95915030 | MsG0580029355.01.T01:CDS | 30.0% | |
| ACACTTACTCGACAATATAT+CGG | + | Chr5:95914666-95914685 | None:intergenic | 30.0% | |
| ATATGAAACTATGGTACTCA+AGG | + | Chr5:95915314-95915333 | None:intergenic | 30.0% | |
| ATCTCACAAGACATTCTATT+GGG | + | Chr5:95915195-95915214 | None:intergenic | 30.0% | |
| ATGAGGAAATTGATGAAATG+TGG | + | Chr5:95913978-95913997 | None:intergenic | 30.0% | |
| CTTGTAAACAGAAACATAAG+AGG | - | Chr5:95914891-95914910 | MsG0580029355.01.T01:CDS | 30.0% | |
| GAGTTTAGGAATTAATCACA+CGG | - | Chr5:95914094-95914113 | MsG0580029355.01.T01:CDS | 30.0% | |
| TATCTCACAAGACATTCTAT+TGG | + | Chr5:95915196-95915215 | None:intergenic | 30.0% | |
| TCATGTATTGTGTTATCATG+GGG | - | Chr5:95914184-95914203 | MsG0580029355.01.T01:CDS | 30.0% | |
| TTCGATAAAAGGTTATAGAG+CGG | - | Chr5:95914790-95914809 | MsG0580029355.01.T01:CDS | 30.0% | |
| TTGAGCAAACATTCGATAAA+AGG | - | Chr5:95914779-95914798 | MsG0580029355.01.T01:CDS | 30.0% | |
| ! | ATTCTGCATAAATCAGCTTT+TGG | + | Chr5:95914836-95914855 | None:intergenic | 30.0% |
| ! | CTTGATTGGTTGAAAAGAAT+TGG | - | Chr5:95914395-95914414 | MsG0580029355.01.T01:CDS | 30.0% |
| !! | AGTTTGTTGTTGTTCTTGAT+TGG | - | Chr5:95914381-95914400 | MsG0580029355.01.T01:CDS | 30.0% |
| !! | ATACCCAACATACTTTTTAC+AGG | - | Chr5:95915213-95915232 | MsG0580029355.01.T01:CDS | 30.0% |
| !! | TATGTATGATTTGTTCAAGG+GGG | - | Chr5:95914529-95914548 | MsG0580029355.01.T01:CDS | 30.0% |
| !!! | GAAATTTTTGGGTATGGAAA+TGG | - | Chr5:95914248-95914267 | MsG0580029355.01.T01:CDS | 30.0% |
| !!! | GAACCTTTTTTAGAGAGTTT+AGG | - | Chr5:95914080-95914099 | MsG0580029355.01.T01:CDS | 30.0% |
| AAACAGAAACATAAGAGGAG+TGG | - | Chr5:95914896-95914915 | MsG0580029355.01.T01:CDS | 35.0% | |
| AGACCTTCCAACAACAAATT+CGG | + | Chr5:95914557-95914576 | None:intergenic | 35.0% | |
| AGGAATTAATCACACGGAAT+TGG | - | Chr5:95914100-95914119 | MsG0580029355.01.T01:CDS | 35.0% | |
| CAAGAGTTTCAATGTATGAG+TGG | - | Chr5:95915254-95915273 | MsG0580029355.01.T01:CDS | 35.0% | |
| CCCAAAAATTTCTCTTGCTT+CGG | + | Chr5:95914240-95914259 | None:intergenic | 35.0% | |
| CTCTTCAGGATTAGAATCTT+AGG | + | Chr5:95915124-95915143 | None:intergenic | 35.0% | |
| GAAGCAGTAAAATTGTTTCC+AGG | - | Chr5:95915010-95915029 | MsG0580029355.01.T01:CDS | 35.0% | |
| GAATTGGGATTGAGAGTAAA+TGG | - | Chr5:95914411-95914430 | MsG0580029355.01.T01:CDS | 35.0% | |
| TATATTGTCGAGTAAGTGTG+TGG | - | Chr5:95914667-95914686 | MsG0580029355.01.T01:CDS | 35.0% | |
| TCCATTGGAGCTTATTAGTT+TGG | - | Chr5:95914868-95914887 | MsG0580029355.01.T01:CDS | 35.0% | |
| TTCAATGTATGAGTGGTTGA+AGG | - | Chr5:95915261-95915280 | MsG0580029355.01.T01:CDS | 35.0% | |
| TTGTGACCCGCTTATTAAAT+TGG | - | Chr5:95914931-95914950 | MsG0580029355.01.T01:CDS | 35.0% | |
| TTTAATAAGCGGGTCACAAT+AGG | + | Chr5:95914930-95914949 | None:intergenic | 35.0% | |
| TTTATACGTTGCCAGATTGT+TGG | + | Chr5:95915385-95915404 | None:intergenic | 35.0% | |
| TTTGTGAATATGCATCCTGA+AGG | - | Chr5:95915358-95915377 | MsG0580029355.01.T01:CDS | 35.0% | |
| ! | ACCGAAGCAAGAGAAATTTT+TGG | - | Chr5:95914236-95914255 | MsG0580029355.01.T01:CDS | 35.0% |
| ! | ACGTCCTGTAAAAAGTATGT+TGG | + | Chr5:95915220-95915239 | None:intergenic | 35.0% |
| ! | CCGAAGCAAGAGAAATTTTT+GGG | - | Chr5:95914237-95914256 | MsG0580029355.01.T01:CDS | 35.0% |
| ! | CGTCCTGTAAAAAGTATGTT+GGG | + | Chr5:95915219-95915238 | None:intergenic | 35.0% |
| ! | GATGAAATGTGGAGAGTTTT+TGG | + | Chr5:95913967-95913986 | None:intergenic | 35.0% |
| ! | TCTAGGTCGGTTTATTAAGT+CGG | - | Chr5:95914598-95914617 | MsG0580029355.01.T01:CDS | 35.0% |
| !! | AACATACTTTTTACAGGACG+TGG | - | Chr5:95915219-95915238 | MsG0580029355.01.T01:CDS | 35.0% |
| !! | AATTTGTTGTTGGAAGGTCT+AGG | - | Chr5:95914557-95914576 | MsG0580029355.01.T01:CDS | 35.0% |
| !! | ATTTGTTGTTGGAAGGTCTA+GGG | - | Chr5:95914558-95914577 | MsG0580029355.01.T01:CDS | 35.0% |
| !!! | GCAAGAGAAATTTTTGGGTA+TGG | - | Chr5:95914242-95914261 | MsG0580029355.01.T01:CDS | 35.0% |
| !!! | TGTAGTTTTGTGTGTAGTGA+AGG | + | Chr5:95913920-95913939 | None:intergenic | 35.0% |
| !!! | TGTTTGTTGTCCTTTGCTTT+TGG | - | Chr5:95914340-95914359 | MsG0580029355.01.T01:CDS | 35.0% |
| AAAATCAACATCCCTGACGA+TGG | - | Chr5:95914002-95914021 | MsG0580029355.01.T01:CDS | 40.0% | |
| ACATCACCAACCAAAAGCAA+AGG | + | Chr5:95914353-95914372 | None:intergenic | 40.0% | |
| AGAAACATAAGAGGAGTGGA+GGG | - | Chr5:95914900-95914919 | MsG0580029355.01.T01:CDS | 40.0% | |
| AGGGTATATGGAAAACTCTG+AGG | - | Chr5:95914979-95914998 | MsG0580029355.01.T01:CDS | 40.0% | |
| AGGTTATAGAGCGGTTTGTA+AGG | - | Chr5:95914799-95914818 | MsG0580029355.01.T01:CDS | 40.0% | |
| CTTGCTGAAACTAGGGTATA+TGG | - | Chr5:95914967-95914986 | MsG0580029355.01.T01:CDS | 40.0% | |
| GCCAAACTAATAAGCTCCAA+TGG | + | Chr5:95914872-95914891 | None:intergenic | 40.0% | |
| GTAAAATTGTTTCCAGGGAG+AGG | - | Chr5:95915016-95915035 | MsG0580029355.01.T01:CDS | 40.0% | |
| GTAAATTGGTGGAGAAAGAG+CGG | + | Chr5:95913850-95913869 | None:intergenic | 40.0% | |
| TAAATTGGTGGAGAAAGAGC+GGG | + | Chr5:95913849-95913868 | None:intergenic | 40.0% | |
| TGATCAGTTACAGGAGAGAT+TGG | - | Chr5:95915039-95915058 | MsG0580029355.01.T01:CDS | 40.0% | |
| TGTATGAGTGGTTGAAGGAA+AGG | - | Chr5:95915266-95915285 | MsG0580029355.01.T01:CDS | 40.0% | |
| TTGTAGCACTGCGATTAGAA+TGG | - | Chr5:95915087-95915106 | MsG0580029355.01.T01:CDS | 40.0% | |
| ! | ACGTTGTGCTTCAATTTTCG+TGG | + | Chr5:95913883-95913902 | None:intergenic | 40.0% |
| ! | AGGAAGCTGTTCTTGTTTCT+AGG | - | Chr5:95914581-95914600 | MsG0580029355.01.T01:CDS | 40.0% |
| ! | CTAGGTCGGTTTATTAAGTC+GGG | - | Chr5:95914599-95914618 | MsG0580029355.01.T01:CDS | 40.0% |
| ! | TATGGAAAACTCTGAGGAGA+TGG | - | Chr5:95914985-95915004 | MsG0580029355.01.T01:CDS | 40.0% |
| ! | TGGGTATGGAAATGGAGTTT+TGG | - | Chr5:95914256-95914275 | MsG0580029355.01.T01:CDS | 40.0% |
| !! | AGCTGTTCTTGTTTCTAGGT+CGG | - | Chr5:95914585-95914604 | MsG0580029355.01.T01:CDS | 40.0% |
| !! | CTAGTTCTAGCACTTATAGC+TGG | - | Chr5:95914450-95914469 | MsG0580029355.01.T01:CDS | 40.0% |
| !! | GATCCGAATTTGTTGTTGGA+AGG | - | Chr5:95914551-95914570 | MsG0580029355.01.T01:CDS | 40.0% |
| !! | TGTTGTCCTTTGCTTTTGGT+TGG | - | Chr5:95914344-95914363 | MsG0580029355.01.T01:CDS | 40.0% |
| !!! | ATCGTCAGGGATGTTGATTT+TGG | + | Chr5:95914003-95914022 | None:intergenic | 40.0% |
| !!! | GGATGTTGATTTTGGAGATG+AGG | + | Chr5:95913995-95914014 | None:intergenic | 40.0% |
| AATCCAAACCAGCTTCTACG+AGG | + | Chr5:95915069-95915088 | None:intergenic | 45.0% | |
| ACGGCTTTCTTGCTGAAACT+AGG | - | Chr5:95914959-95914978 | MsG0580029355.01.T01:CDS | 45.0% | |
| AGAGCGGTTTGTAAGGAGTT+AGG | - | Chr5:95914806-95914825 | MsG0580029355.01.T01:CDS | 45.0% | |
| ATCCTGAAGGTCCAACAATC+TGG | - | Chr5:95915371-95915390 | MsG0580029355.01.T01:CDS | 45.0% | |
| ATCTTCGCCATTCGATTCCT+CGG | + | Chr5:95914212-95914231 | None:intergenic | 45.0% | |
| CAGAAACATAAGAGGAGTGG+AGG | - | Chr5:95914899-95914918 | MsG0580029355.01.T01:CDS | 45.0% | |
| CGGCTTTCTTGCTGAAACTA+GGG | - | Chr5:95914960-95914979 | MsG0580029355.01.T01:CDS | 45.0% | |
| GCGCGTTTGATGTAAATTGG+TGG | + | Chr5:95913861-95913880 | None:intergenic | 45.0% | |
| GTGGCGCGTTTGATGTAAAT+TGG | + | Chr5:95913864-95913883 | None:intergenic | 45.0% | |
| TGGAGAAAGAGCGGGAATTT+GGG | + | Chr5:95913841-95913860 | None:intergenic | 45.0% | |
| AGAAAGAGCGGGAATTTGGG+TGG | + | Chr5:95913838-95913857 | None:intergenic | 50.0% | |
| AGGGAGAGGTGATCAGTTAC+AGG | - | Chr5:95915030-95915049 | MsG0580029355.01.T01:CDS | 50.0% | |
| GAAAAACGTCGCCATCGTCA+GGG | + | Chr5:95914016-95914035 | None:intergenic | 50.0% | |
| GTGGAGAAAGAGCGGGAATT+TGG | + | Chr5:95913842-95913861 | None:intergenic | 50.0% | |
| TGCCAGATTGTTGGACCTTC+AGG | + | Chr5:95915376-95915395 | None:intergenic | 50.0% | |
| TGTAACTGATCACCTCTCCC+TGG | + | Chr5:95915031-95915050 | None:intergenic | 50.0% | |
| TGTGTTATCATGGGGTTCCG+AGG | - | Chr5:95914192-95914211 | MsG0580029355.01.T01:CDS | 50.0% | |
| TGTTGTTGGAAGGTCTAGGG+AGG | - | Chr5:95914561-95914580 | MsG0580029355.01.T01:CDS | 50.0% | |
| !! | GGGGGATCCGAATTTGTTGT+TGG | - | Chr5:95914547-95914566 | MsG0580029355.01.T01:CDS | 50.0% |
| CGAAAAACGTCGCCATCGTC+AGG | + | Chr5:95914017-95914036 | None:intergenic | 55.0% | |
| CTGCCTCGTAGAAGCTGGTT+TGG | - | Chr5:95915063-95915082 | MsG0580029355.01.T01:CDS | 55.0% | |
| TGGGGTTCCGAGGAATCGAA+TGG | - | Chr5:95914202-95914221 | MsG0580029355.01.T01:CDS | 55.0% | |
| TTGGACTGCCTCGTAGAAGC+TGG | - | Chr5:95915058-95915077 | MsG0580029355.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 95913819 | 95915432 | 95913819 | ID=MsG0580029355.01;Name=MsG0580029355.01 |
| Chr5 | mRNA | 95913819 | 95915432 | 95913819 | ID=MsG0580029355.01.T01;Parent=MsG0580029355.01;Name=MsG0580029355.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|537 |
| Chr5 | exon | 95913819 | 95915432 | 95913819 | ID=MsG0580029355.01.T01:exon:36075;Parent=MsG0580029355.01.T01 |
| Chr5 | CDS | 95913819 | 95915432 | 95913819 | ID=MsG0580029355.01.T01:cds;Parent=MsG0580029355.01.T01 |
| Gene Sequence |
| Protein sequence |
