AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023652.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023652.01.T01 MTR_8g098345 70.588 170 21 3 30 170 390 559 1.90e-58 199
MsG0480023652.01.T01 MTR_8g098345 62.727 110 17 3 164 257 648 749 4.43e-33 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023652.01.T01 AT1G63680 57.627 177 41 3 28 170 396 572 1.87e-48 171
MsG0480023652.01.T01 AT1G63680 61.667 120 22 3 164 267 661 772 5.46e-39 144
MsG0480023652.01.T01 AT1G63680 57.627 177 41 3 28 170 396 572 1.87e-48 171
MsG0480023652.01.T01 AT1G63680 61.667 120 22 3 164 267 661 772 5.46e-39 144
MsG0480023652.01.T01 AT1G63680 57.627 177 41 3 28 170 396 572 1.87e-48 171
MsG0480023652.01.T01 AT1G63680 61.667 120 22 3 164 267 661 772 5.46e-39 144

Find 75 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAGTTGGATTCGTCTTA+TGG 0.216741 4:+88095233 MsG0480023652.01.T01:CDS
CTTCTATTTGATATGTTTCA+TGG 0.262320 4:-88097655 None:intergenic
CATTGCTGTTGGGGCACCCT+TGG 0.269688 4:+88095719 MsG0480023652.01.T01:CDS
TATGGGGTTGGATGCTGTTT+TGG 0.292220 4:+88095251 MsG0480023652.01.T01:CDS
TCAAATAGAAGGTGAGAAAA+AGG 0.297061 4:+88097667 MsG0480023652.01.T01:CDS
TGGCAGTTGGCATTGCTGTT+GGG 0.297200 4:+88095709 MsG0480023652.01.T01:CDS
ATGCAAGAGTATCTGAAATA+TGG 0.320054 4:+88096398 MsG0480023652.01.T01:CDS
TGCGCCTTTGTTCGTTTCAA+TGG 0.326884 4:+88095508 MsG0480023652.01.T01:CDS
GCGCCTTTGTTCGTTTCAAT+GGG 0.352036 4:+88095509 MsG0480023652.01.T01:CDS
TAATACACCTGCTGGGATAC+TGG 0.353461 4:+88095632 MsG0480023652.01.T01:CDS
ATCAGTTGGATTCGTCTTAT+GGG 0.358561 4:+88095234 MsG0480023652.01.T01:CDS
TTCTTCGCGCGGATTGGCTC+AGG 0.360852 4:+88095332 MsG0480023652.01.T01:CDS
CCCTTGGAGGATATTGTTAG+AGG 0.378411 4:+88095735 MsG0480023652.01.T01:CDS
GTGGCAGTTGGCATTGCTGT+TGG 0.380126 4:+88095708 MsG0480023652.01.T01:CDS
TGAGGCTTCTTCGCGCGGAT+TGG 0.380295 4:+88095326 MsG0480023652.01.T01:CDS
AAGCCTCCCTGCACTCTTCT+CGG 0.384444 4:-88097703 None:intergenic
ATGGCTAAGATGCTTCATAA+TGG 0.390726 4:+88095285 MsG0480023652.01.T01:CDS
TGCTGTTGGGGCACCCTTGG+AGG 0.395991 4:+88095722 MsG0480023652.01.T01:CDS
CATGAAACATATCAAATAGA+AGG 0.403779 4:+88097656 MsG0480023652.01.T01:CDS
GAAATTTCGTCCGGTTTACT+AGG 0.429518 4:+88095654 MsG0480023652.01.T01:CDS
GGATGAGGAGGACGAGGAAG+AGG 0.435631 4:+88095404 MsG0480023652.01.T01:CDS
TCGATTGCTAGTTATGTTCA+TGG 0.437145 4:+88095206 MsG0480023652.01.T01:CDS
TGCATGGTGCAGGTGATTGC+TGG 0.441426 4:+88097626 MsG0480023652.01.T01:intron
CTTAGGTATCAGTGGCTCTC+TGG 0.444019 4:-88097942 None:intergenic
TTGGATTCGTCTTATGGGGT+TGG 0.444911 4:+88095239 MsG0480023652.01.T01:CDS
ATTCTTGCTGCTGTGGCAGT+TGG 0.464613 4:+88095696 MsG0480023652.01.T01:CDS
TCTTCGCGCGGATTGGCTCA+GGG 0.472077 4:+88095333 MsG0480023652.01.T01:CDS
CTCCTCTTTCAAATGGTCCC+AGG 0.474304 4:+88096437 MsG0480023652.01.T01:CDS
GAAACGAACAAAGGCGCACT+TGG 0.476109 4:-88095503 None:intergenic
GGCAGTTGGCATTGCTGTTG+GGG 0.477281 4:+88095710 MsG0480023652.01.T01:CDS
AGGTTTGGTAATACACCTGC+TGG 0.479302 4:+88095624 MsG0480023652.01.T01:intron
CGATTGCTAGTTATGTTCAT+GGG 0.481862 4:+88095207 MsG0480023652.01.T01:CDS
TACTATCCTCCTCTTTCAAA+TGG 0.483577 4:+88096430 MsG0480023652.01.T01:CDS
TAAAAGTATGTATGAAGCGA+TGG 0.489181 4:+88095160 None:intergenic
TCGATGACCGAGAAGAGTGC+AGG 0.490095 4:+88097696 MsG0480023652.01.T01:CDS
AAGCGATGGGTTTACGTACC+GGG 0.504543 4:+88095174 MsG0480023652.01.T01:CDS
AACAACTTTCCTATGCGCTC+AGG 0.508888 4:-88095468 None:intergenic
TTTCGTCCGGTTTACTAGGA+AGG 0.513445 4:+88095658 MsG0480023652.01.T01:CDS
TGTTCATGGGGATAATCAGT+TGG 0.516920 4:+88095220 MsG0480023652.01.T01:CDS
ATTGTGCCTTCCTAGTAAAC+CGG 0.517946 4:-88095664 None:intergenic
GGGATACTGGAAATTTCGTC+CGG 0.527829 4:+88095645 MsG0480023652.01.T01:CDS
CCCTCTAACAATATCCTCCA+AGG 0.528483 4:-88095736 None:intergenic
GTTGACGAGCTTCATCAAGC+TGG 0.530037 4:+88097734 MsG0480023652.01.T01:CDS
AACATTTGACATTACCGCCA+TGG 0.539836 4:-88097776 None:intergenic
ATATTGTTAGAGGGATGAAG+AGG 0.540329 4:+88095745 MsG0480023652.01.T01:CDS
ATATGTTGGCTGGGGTAGGA+TGG 0.546203 4:+88096372 MsG0480023652.01.T01:CDS
CTTCGCGCGGATTGGCTCAG+GGG 0.552284 4:+88095334 MsG0480023652.01.T01:CDS
TACGAATTTGATGGATGAGG+AGG 0.554797 4:+88095392 MsG0480023652.01.T01:CDS
GAAGCGATGGGTTTACGTAC+CGG 0.555215 4:+88095173 MsG0480023652.01.T01:CDS
TCAGTTGGATTCGTCTTATG+GGG 0.562088 4:+88095235 MsG0480023652.01.T01:CDS
CAGCTACCCTCCTAATGTCA+TGG 0.562556 4:-88096468 None:intergenic
TAGATACAAGTGAATTTCCA+TGG 0.572678 4:+88097759 MsG0480023652.01.T01:CDS
GTGCAGGTGATTGCTGGTAA+AGG 0.573284 4:+88097632 MsG0480023652.01.T01:intron
TTACAACATTCTTGCTGCTG+TGG 0.577487 4:+88095689 MsG0480023652.01.T01:CDS
GGAAGAGGATAGAGATGCGA+AGG 0.577527 4:+88095419 MsG0480023652.01.T01:CDS
AAAAGTATGTATGAAGCGAT+GGG 0.584741 4:+88095161 None:intergenic
CGATGACCGAGAAGAGTGCA+GGG 0.586317 4:+88097697 MsG0480023652.01.T01:CDS
GACGATATGTTGGCTGGGGT+AGG 0.590280 4:+88096368 MsG0480023652.01.T01:CDS
CCTTGGAGGATATTGTTAGA+GGG 0.591465 4:+88095736 MsG0480023652.01.T01:CDS
TTTGATGGATGAGGAGGACG+AGG 0.591487 4:+88095398 MsG0480023652.01.T01:CDS
AGCCTGGGACCATTTGAAAG+AGG 0.595018 4:-88096439 None:intergenic
CGCCTTTGTTCGTTTCAATG+GGG 0.598646 4:+88095510 MsG0480023652.01.T01:CDS
GAAATTTCCAGTATCCCAGC+AGG 0.601448 4:-88095639 None:intergenic
CTCCCCATTGAAACGAACAA+AGG 0.607522 4:-88095512 None:intergenic
CCTCTAACAATATCCTCCAA+GGG 0.619291 4:-88095735 None:intergenic
TTTGGACGATATGTTGGCTG+GGG 0.620608 4:+88096364 MsG0480023652.01.T01:CDS
AGCAATCGAGTTAAACATCC+CGG 0.622878 4:-88095192 None:intergenic
CTGGGACCATTTGAAAGAGG+AGG 0.635027 4:-88096436 None:intergenic
TCATAATGGAACTGAATCTG+TGG 0.641742 4:+88095299 MsG0480023652.01.T01:CDS
GATTGCTAGTTATGTTCATG+GGG 0.647011 4:+88095208 MsG0480023652.01.T01:CDS
GGCTCAGGGGAAATATGATG+AGG 0.665665 4:+88095347 MsG0480023652.01.T01:CDS
GGTTTGGTAATACACCTGCT+GGG 0.673388 4:+88095625 MsG0480023652.01.T01:intron
ATGGTGGATCCTGAGCGCAT+AGG 0.686122 4:+88095459 MsG0480023652.01.T01:CDS
TGACCGAGAAGAGTGCAGGG+AGG 0.749733 4:+88097700 MsG0480023652.01.T01:CDS
ATACAAGTGAATTTCCATGG+CGG 0.800600 4:+88097762 MsG0480023652.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATCTTTTTTTTTTTTTTTT+TGG + Chr4:88097467-88097486 MsG0480023652.01.T01:intron 10.0%
!! AAAAAAAAAAAAAGATGAGT+TGG - Chr4:88097464-88097483 None:intergenic 15.0%
!! AACAAATTCTGAATATTTAT+AGG + Chr4:88096847-88096866 MsG0480023652.01.T01:intron 15.0%
!! ACAAATTCTGAATATTTATA+GGG + Chr4:88096848-88096867 MsG0480023652.01.T01:intron 15.0%
!! ATGAAATTCTGAATATTTAT+AGG - Chr4:88096689-88096708 None:intergenic 15.0%
!! TGAAATTCTGAATATTTATA+GGG - Chr4:88096688-88096707 None:intergenic 15.0%
!!! AAAAGTGTAATTTATTTTGT+AGG + Chr4:88096817-88096836 MsG0480023652.01.T01:intron 15.0%
!!! AAAGTGTAATTTATTTTGTA+GGG + Chr4:88096818-88096837 MsG0480023652.01.T01:intron 15.0%
!! ATAGTGGTTAATTAAGTAAA+TGG + Chr4:88096661-88096680 MsG0480023652.01.T01:intron 20.0%
!! ATTAAATCTTACTTAGTGAA+TGG + Chr4:88097369-88097388 MsG0480023652.01.T01:intron 20.0%
!! GCATAATTAATTATATCGTT+TGG + Chr4:88096021-88096040 MsG0480023652.01.T01:intron 20.0%
!!! AAGAAGGAATTGTTTATTTT+TGG + Chr4:88097570-88097589 MsG0480023652.01.T01:intron 20.0%
!!! ACTTTTACTTTTTTATTCAG+TGG + Chr4:88096337-88096356 MsG0480023652.01.T01:intron 20.0%
!!! AGTAAAAGTATGAAAGAATT+AGG - Chr4:88096326-88096345 None:intergenic 20.0%
!!! ATATTTTCCTTTAGCATTTT+AGG - Chr4:88096786-88096805 None:intergenic 20.0%
!!! TAATTTAAACCATTTTGGTT+CGG + Chr4:88096614-88096633 MsG0480023652.01.T01:intron 20.0%
!!! TATTTTCCTTTAGCATTTTA+GGG - Chr4:88096785-88096804 None:intergenic 20.0%
!!! TTTTACGTCAACATTTTTTT+TGG + Chr4:88096758-88096777 MsG0480023652.01.T01:intron 20.0%
!!! TTTTTATTCAGTGGATATTT+TGG + Chr4:88096346-88096365 MsG0480023652.01.T01:intron 20.0%
!!! TTTTTGGGTTACTAATTATA+AGG + Chr4:88095974-88095993 MsG0480023652.01.T01:intron 20.0%
! AATTATCCGAAATGATTAAG+GGG - Chr4:88097533-88097552 None:intergenic 25.0%
! AATTATTATTCGTATTCACG+TGG + Chr4:88097165-88097184 MsG0480023652.01.T01:intron 25.0%
! ACACATCTTAATATTGTTCA+AGG - Chr4:88096892-88096911 None:intergenic 25.0%
! ACCAATATTAATATGCAAGA+AGG + Chr4:88097554-88097573 MsG0480023652.01.T01:intron 25.0%
! AGTTAGACATTGTGAAATTT+GGG - Chr4:88096289-88096308 None:intergenic 25.0%
! ATACGAATAATAATTGTGGA+TGG - Chr4:88097160-88097179 None:intergenic 25.0%
! ATCAAAGTGATATTCAACTA+AGG + Chr4:88096912-88096931 MsG0480023652.01.T01:intron 25.0%
! ATTAGGATTCCAACATTTAA+GGG - Chr4:88097286-88097305 None:intergenic 25.0%
! CACATCTTAATATTGTTCAA+GGG - Chr4:88096891-88096910 None:intergenic 25.0%
! CATGAAACATATCAAATAGA+AGG + Chr4:88097656-88097675 MsG0480023652.01.T01:CDS 25.0%
! CTTCAAAAGAAGAAAAAAGA+CGG - Chr4:88096080-88096099 None:intergenic 25.0%
! CTTCTATTTGATATGTTTCA+TGG - Chr4:88097658-88097677 None:intergenic 25.0%
! GAATTATCCGAAATGATTAA+GGG - Chr4:88097534-88097553 None:intergenic 25.0%
! GTGAATACGAATAATAATTG+TGG - Chr4:88097164-88097183 None:intergenic 25.0%
! GTTCAAAAACAAAATTGAGA+AGG - Chr4:88095945-88095964 None:intergenic 25.0%
! GTTTGACGCATTTAAATTTA+AGG - Chr4:88097118-88097137 None:intergenic 25.0%
! TAGTTAGACATTGTGAAATT+TGG - Chr4:88096290-88096309 None:intergenic 25.0%
! TCAAGGGTTAATTAAGTAAA+TGG - Chr4:88096875-88096894 None:intergenic 25.0%
! TCACTAAGTAAGATTTAATG+AGG - Chr4:88097368-88097387 None:intergenic 25.0%
! TCCTTCTTGCATATTAATAT+TGG - Chr4:88097558-88097577 None:intergenic 25.0%
! TGAATTATCCGAAATGATTA+AGG - Chr4:88097535-88097554 None:intergenic 25.0%
! TGGTTTATGATAGAACATTA+TGG - Chr4:88097024-88097043 None:intergenic 25.0%
! TGTATTTCTCTTAATTGATG+TGG + Chr4:88095913-88095932 MsG0480023652.01.T01:intron 25.0%
!! GTGCTTAATTTAAACCATTT+TGG + Chr4:88096609-88096628 MsG0480023652.01.T01:intron 25.0%
!! GTTGACGTAAAATTTTTACA+GGG - Chr4:88096750-88096769 None:intergenic 25.0%
!! TGTTGACGTAAAATTTTTAC+AGG - Chr4:88096751-88096770 None:intergenic 25.0%
!! TTCCATTGCTACTTAATTTA+GGG - Chr4:88097055-88097074 None:intergenic 25.0%
!! TTTCCATTGCTACTTAATTT+AGG - Chr4:88097056-88097075 None:intergenic 25.0%
!!! AATTTAAACCATTTTGGTTC+GGG + Chr4:88096615-88096634 MsG0480023652.01.T01:intron 25.0%
!!! TCTCAATTTTGTTTTTGAAC+TGG + Chr4:88095945-88095964 MsG0480023652.01.T01:intron 25.0%
!!! TGTTGTTGCAACTTATTTTA+GGG - Chr4:88096943-88096962 None:intergenic 25.0%
!!! TTGAACTGGAGAAATTTTTT+GGG + Chr4:88095959-88095978 MsG0480023652.01.T01:intron 25.0%
!!! TTGTTGTTGCAACTTATTTT+AGG - Chr4:88096944-88096963 None:intergenic 25.0%
!!! TTTGAACTGGAGAAATTTTT+TGG + Chr4:88095958-88095977 MsG0480023652.01.T01:intron 25.0%
!!! TTTTCTTCTTTTGAAGTGAT+TGG + Chr4:88096084-88096103 MsG0480023652.01.T01:intron 25.0%
!!! TTTTGTTGTCTTTTTATGAC+TGG + Chr4:88097805-88097824 MsG0480023652.01.T01:intron 25.0%
!!! TTTTTTTTTGGGTATGAACT+TGG + Chr4:88097479-88097498 MsG0480023652.01.T01:intron 25.0%
AAAAGAAGAAAAAAGACGGT+CGG - Chr4:88096076-88096095 None:intergenic 30.0%
AAAGAGAGTTCAAACTTCAA+GGG - Chr4:88095593-88095612 None:intergenic 30.0%
ACTAATCCCCTTAATCATTT+CGG + Chr4:88097524-88097543 MsG0480023652.01.T01:intron 30.0%
AGAATCAAGTAATCTAGACA+AGG - Chr4:88095852-88095871 None:intergenic 30.0%
ATGCTAAAGGAAAATATCAC+AGG + Chr4:88096789-88096808 MsG0480023652.01.T01:intron 30.0%
ATTCAAAGCTGTTGACAAAT+TGG + Chr4:88097087-88097106 MsG0480023652.01.T01:intron 30.0%
ATTCGATATTGCTCTTAACA+AGG - Chr4:88096249-88096268 None:intergenic 30.0%
CCAATGTCAAAATACATACA+TGG - Chr4:88096212-88096231 None:intergenic 30.0%
CTTAATTTAGGGAAATGTGA+TGG - Chr4:88097044-88097063 None:intergenic 30.0%
GATTAGGATTCCAACATTTA+AGG - Chr4:88097287-88097306 None:intergenic 30.0%
TAGATACAAGTGAATTTCCA+TGG + Chr4:88097759-88097778 MsG0480023652.01.T01:CDS 30.0%
TCAAATAGAAGGTGAGAAAA+AGG + Chr4:88097667-88097686 MsG0480023652.01.T01:CDS 30.0%
TGCTAAAGGAAAATATCACA+GGG + Chr4:88096790-88096809 MsG0480023652.01.T01:intron 30.0%
TTAATGAGGAAAAAATCGAC+AGG - Chr4:88097354-88097373 None:intergenic 30.0%
TTAGGATTCCAACATTTAAG+GGG - Chr4:88097285-88097304 None:intergenic 30.0%
TTCCCTAAATTAAGTAGCAA+TGG + Chr4:88097050-88097069 MsG0480023652.01.T01:intron 30.0%
TTTCTCTTAATTGATGTGGA+AGG + Chr4:88095917-88095936 MsG0480023652.01.T01:intron 30.0%
! ATGCTGACGAAAATTTTTAC+AGG - Chr4:88096720-88096739 None:intergenic 30.0%
! GGAATGTGATTTGTCAATAA+GGG + Chr4:88097591-88097610 MsG0480023652.01.T01:intron 30.0%
! TGCTGACGAAAATTTTTACA+GGG - Chr4:88096719-88096738 None:intergenic 30.0%
! TGGAATGTGATTTGTCAATA+AGG + Chr4:88097590-88097609 MsG0480023652.01.T01:intron 30.0%
!! AGGATTAGTTAAAGCTTCAT+AGG - Chr4:88097334-88097353 None:intergenic 30.0%
!! ATGCAAGAGTATCTGAAATA+TGG + Chr4:88096398-88096417 MsG0480023652.01.T01:CDS 30.0%
!! TTTGTCAACAGCTTTGAATA+TGG - Chr4:88097086-88097105 None:intergenic 30.0%
!! TTTTACGAATTTGATGGATG+AGG + Chr4:88095389-88095408 MsG0480023652.01.T01:CDS 30.0%
!!! CCATGTATGTATTTTGACAT+TGG + Chr4:88096209-88096228 MsG0480023652.01.T01:intron 30.0%
!!! TGCTGTTTTTACGAATTTGA+TGG + Chr4:88095383-88095402 MsG0480023652.01.T01:CDS 30.0%
!!! TGTTTTGGTTCAGAATTTGA+TGG + Chr4:88095266-88095285 MsG0480023652.01.T01:CDS 30.0%
AAGAAATACCCGAACCAAAA+TGG - Chr4:88096626-88096645 None:intergenic 35.0%
AATCAGTTGGATTCGTCTTA+TGG + Chr4:88095233-88095252 MsG0480023652.01.T01:CDS 35.0%
AGATAAAAGTGAAGTGACCA+TGG + Chr4:88096159-88096178 MsG0480023652.01.T01:intron 35.0%
ATACAAGTGAATTTCCATGG+CGG + Chr4:88097762-88097781 MsG0480023652.01.T01:CDS 35.0%
ATATTGTTAGAGGGATGAAG+AGG + Chr4:88095745-88095764 MsG0480023652.01.T01:CDS 35.0%
ATCAGTTGGATTCGTCTTAT+GGG + Chr4:88095234-88095253 MsG0480023652.01.T01:CDS 35.0%
ATGGCTAAGATGCTTCATAA+TGG + Chr4:88095285-88095304 MsG0480023652.01.T01:CDS 35.0%
CAAAGAGAGTTCAAACTTCA+AGG - Chr4:88095594-88095613 None:intergenic 35.0%
CGATTGCTAGTTATGTTCAT+GGG + Chr4:88095207-88095226 MsG0480023652.01.T01:CDS 35.0%
CTACTTAAACGAGACAGATT+AGG - Chr4:88097303-88097322 None:intergenic 35.0%
GATCTTATGAAGTCACAACT+TGG + Chr4:88097232-88097251 MsG0480023652.01.T01:intron 35.0%
GATTGCTAGTTATGTTCATG+GGG + Chr4:88095208-88095227 MsG0480023652.01.T01:CDS 35.0%
TACTATCCTCCTCTTTCAAA+TGG + Chr4:88096430-88096449 MsG0480023652.01.T01:CDS 35.0%
TCGATTGCTAGTTATGTTCA+TGG + Chr4:88095206-88095225 MsG0480023652.01.T01:CDS 35.0%
TCTCTTGCATTTATTGTTGC+AGG + Chr4:88097916-88097935 MsG0480023652.01.T01:intron 35.0%
TTAAAGCTTCATAGGAAGCA+AGG - Chr4:88097326-88097345 None:intergenic 35.0%
TTTCACAATGTCTAACTAGC+AGG + Chr4:88096292-88096311 MsG0480023652.01.T01:intron 35.0%
TTTGGTCCCTAAAATGCTAA+AGG + Chr4:88096776-88096795 MsG0480023652.01.T01:intron 35.0%
! AACTGAATCTGTGGTTTTTG+AGG + Chr4:88095308-88095327 MsG0480023652.01.T01:CDS 35.0%
! TCATAATGGAACTGAATCTG+TGG + Chr4:88095299-88095318 MsG0480023652.01.T01:CDS 35.0%
! TTGTCTTTTTATGACTGGCA+TGG + Chr4:88097810-88097829 MsG0480023652.01.T01:intron 35.0%
! TTTTCTCCATGACATTAGGA+GGG + Chr4:88096462-88096481 MsG0480023652.01.T01:CDS 35.0%
! TTTTTCTCCATGACATTAGG+AGG + Chr4:88096461-88096480 MsG0480023652.01.T01:CDS 35.0%
!! GGATATTTTGGACGATATGT+TGG + Chr4:88096358-88096377 MsG0480023652.01.T01:CDS 35.0%
AACATTTGACATTACCGCCA+TGG - Chr4:88097779-88097798 None:intergenic 40.0%
AATGTCACAACAGGAACTTC+AGG - Chr4:88095539-88095558 None:intergenic 40.0%
AATGTCATGGAGAAAAAGCC+TGG - Chr4:88096458-88096477 None:intergenic 40.0%
AATTGACGAGGAACAGCATT+TGG + Chr4:88095796-88095815 MsG0480023652.01.T01:intron 40.0%
AGCAATCGAGTTAAACATCC+CGG - Chr4:88095195-88095214 None:intergenic 40.0%
ATACATGGATCTTCACCCTT+GGG - Chr4:88096197-88096216 None:intergenic 40.0%
ATACCAGTTATAATCCTGCG+AGG - Chr4:88095890-88095909 None:intergenic 40.0%
ATGTCACAACAGGAACTTCA+GGG - Chr4:88095538-88095557 None:intergenic 40.0%
ATGTCATGGAGAAAAAGCCT+GGG - Chr4:88096457-88096476 None:intergenic 40.0%
ATTGACGAGGAACAGCATTT+GGG + Chr4:88095797-88095816 MsG0480023652.01.T01:intron 40.0%
ATTGTGCCTTCCTAGTAAAC+CGG - Chr4:88095667-88095686 None:intergenic 40.0%
CCTCTAACAATATCCTCCAA+GGG - Chr4:88095738-88095757 None:intergenic 40.0%
CCTTGGAGGATATTGTTAGA+GGG + Chr4:88095736-88095755 MsG0480023652.01.T01:CDS 40.0%
CTGTTGCTATCTTGTCATCA+GGG - Chr4:88096141-88096160 None:intergenic 40.0%
GAAATTTCGTCCGGTTTACT+AGG + Chr4:88095654-88095673 MsG0480023652.01.T01:CDS 40.0%
TCAGTTGGATTCGTCTTATG+GGG + Chr4:88095235-88095254 MsG0480023652.01.T01:CDS 40.0%
TCATGCATGAAACTGAACGT+TGG - Chr4:88097203-88097222 None:intergenic 40.0%
TCTGTTGCTATCTTGTCATC+AGG - Chr4:88096142-88096161 None:intergenic 40.0%
TGTGGAAAAGCGAACAATAG+TGG + Chr4:88096645-88096664 MsG0480023652.01.T01:intron 40.0%
TGTTCATGGGGATAATCAGT+TGG + Chr4:88095220-88095239 MsG0480023652.01.T01:CDS 40.0%
TGTTGCTATCTTGTCATCAG+GGG - Chr4:88096140-88096159 None:intergenic 40.0%
TTACAACATTCTTGCTGCTG+TGG + Chr4:88095689-88095708 MsG0480023652.01.T01:CDS 40.0%
TTTGACTGTCAGTCTACACT+TGG + Chr4:88097437-88097456 MsG0480023652.01.T01:intron 40.0%
! ACTCTCTTTGTTTGAGACAC+AGG + Chr4:88095604-88095623 MsG0480023652.01.T01:intron 40.0%
! AGGGTACACTTTTATGTGCA+TGG + Chr4:88097610-88097629 MsG0480023652.01.T01:intron 40.0%
! AGTAATCTAGACAAGGCATC+AGG - Chr4:88095845-88095864 None:intergenic 40.0%
! ATTTTGGACGATATGTTGGC+TGG + Chr4:88096362-88096381 MsG0480023652.01.T01:CDS 40.0%
! CTTTGTTTGAGACACAGGTT+TGG + Chr4:88095609-88095628 MsG0480023652.01.T01:intron 40.0%
! TACGAATTTGATGGATGAGG+AGG + Chr4:88095392-88095411 MsG0480023652.01.T01:CDS 40.0%
! TCCAACATTTAAGGGGTACA+GGG - Chr4:88097278-88097297 None:intergenic 40.0%
! TTCCAACATTTAAGGGGTAC+AGG - Chr4:88097279-88097298 None:intergenic 40.0%
! TTTGAAGTGATTGGTTGCTG+TGG + Chr4:88096093-88096112 MsG0480023652.01.T01:intron 40.0%
!! GGCTTTTTCTCCATGACATT+AGG + Chr4:88096458-88096477 MsG0480023652.01.T01:CDS 40.0%
!! TAAGCTGTTTTCAAGGATGG+TGG + Chr4:88095443-88095462 MsG0480023652.01.T01:CDS 40.0%
!! TTTGGTTCGGGTATTTCTTG+TGG + Chr4:88096627-88096646 MsG0480023652.01.T01:intron 40.0%
!! TTTTGGACGATATGTTGGCT+GGG + Chr4:88096363-88096382 MsG0480023652.01.T01:CDS 40.0%
AACAACTTTCCTATGCGCTC+AGG - Chr4:88095471-88095490 None:intergenic 45.0%
ACAGGGAAGTCAGCTTATCA+TGG - Chr4:88097261-88097280 None:intergenic 45.0%
CAACCTCGCAGGATTATAAC+TGG + Chr4:88095884-88095903 MsG0480023652.01.T01:intron 45.0%
CATACATGGATCTTCACCCT+TGG - Chr4:88096198-88096217 None:intergenic 45.0%
CCCTCTAACAATATCCTCCA+AGG - Chr4:88095739-88095758 None:intergenic 45.0%
CCCTTGGAGGATATTGTTAG+AGG + Chr4:88095735-88095754 MsG0480023652.01.T01:CDS 45.0%
CGCCTTTGTTCGTTTCAATG+GGG + Chr4:88095510-88095529 MsG0480023652.01.T01:CDS 45.0%
CTCCCCATTGAAACGAACAA+AGG - Chr4:88095515-88095534 None:intergenic 45.0%
GAAATTTCCAGTATCCCAGC+AGG - Chr4:88095642-88095661 None:intergenic 45.0%
GAACAGCATTTGGGTCATAG+TGG + Chr4:88095806-88095825 MsG0480023652.01.T01:intron 45.0%
GAGGTGTGAGTTAATTGACG+AGG + Chr4:88095784-88095803 MsG0480023652.01.T01:intron 45.0%
GCGCCTTTGTTCGTTTCAAT+GGG + Chr4:88095509-88095528 MsG0480023652.01.T01:CDS 45.0%
GGGATACTGGAAATTTCGTC+CGG + Chr4:88095645-88095664 MsG0480023652.01.T01:CDS 45.0%
TAATACACCTGCTGGGATAC+TGG + Chr4:88095632-88095651 MsG0480023652.01.T01:CDS 45.0%
TACATGGATCTTCACCCTTG+GGG - Chr4:88096196-88096215 None:intergenic 45.0%
TCAATTAACTCACACCTCCC+AGG - Chr4:88095782-88095801 None:intergenic 45.0%
TCCAACGCAAATGTCACAAC+AGG - Chr4:88095548-88095567 None:intergenic 45.0%
TCCCTGTACCCCTTAAATGT+TGG + Chr4:88097274-88097293 MsG0480023652.01.T01:intron 45.0%
TCCTGTTGTGACATTTGCGT+TGG + Chr4:88095544-88095563 MsG0480023652.01.T01:intron 45.0%
TGCATGAAACTGAACGTTGG+TGG - Chr4:88097200-88097219 None:intergenic 45.0%
TGCGCCTTTGTTCGTTTCAA+TGG + Chr4:88095508-88095527 MsG0480023652.01.T01:CDS 45.0%
TTGGATTCGTCTTATGGGGT+TGG + Chr4:88095239-88095258 MsG0480023652.01.T01:CDS 45.0%
TTTCGTCCGGTTTACTAGGA+AGG + Chr4:88095658-88095677 MsG0480023652.01.T01:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr4:88096975-88096994 MsG0480023652.01.T01:intron 45.0%
! AGGTTTGGTAATACACCTGC+TGG + Chr4:88095624-88095643 MsG0480023652.01.T01:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr4:88096974-88096993 MsG0480023652.01.T01:intron 45.0%
! CACTTTTATGTGCATGGTGC+AGG + Chr4:88097616-88097635 MsG0480023652.01.T01:intron 45.0%
! GGTTTGGTAATACACCTGCT+GGG + Chr4:88095625-88095644 MsG0480023652.01.T01:intron 45.0%
! TTTGGACGATATGTTGGCTG+GGG + Chr4:88096364-88096383 MsG0480023652.01.T01:CDS 45.0%
!! AAGAGGTTGATGCAGTTCCT+GGG + Chr4:88095762-88095781 MsG0480023652.01.T01:intron 45.0%
!! CGAAGGCTAAGCTGTTTTCA+AGG + Chr4:88095436-88095455 MsG0480023652.01.T01:CDS 45.0%
!! GGCTAAGCTGTTTTCAAGGA+TGG + Chr4:88095440-88095459 MsG0480023652.01.T01:CDS 45.0%
!! TATGGGGTTGGATGCTGTTT+TGG + Chr4:88095251-88095270 MsG0480023652.01.T01:CDS 45.0%
!!! ATCTTTTTTTTTTTTTTTTT+GGG + Chr4:88097468-88097487 MsG0480023652.01.T01:intron 5.0%
ACTAAGTGGGGTCAGCTTCA+TGG + Chr4:88096987-88097006 MsG0480023652.01.T01:intron 50.0%
AGCCTGGGACCATTTGAAAG+AGG - Chr4:88096442-88096461 None:intergenic 50.0%
ATCTTCACCCTTGGGGTTGT+CGG - Chr4:88096189-88096208 None:intergenic 50.0%
ATGAAGCTGACCCCACTTAG+TGG - Chr4:88096988-88097007 None:intergenic 50.0%
ATTCTTGCTGCTGTGGCAGT+TGG + Chr4:88095696-88095715 MsG0480023652.01.T01:CDS 50.0%
CAGCTACCCTCCTAATGTCA+TGG - Chr4:88096471-88096490 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - Chr4:88096976-88096995 None:intergenic 50.0%
CTCCTCTTTCAAATGGTCCC+AGG + Chr4:88096437-88096456 MsG0480023652.01.T01:CDS 50.0%
CTGGGACCATTTGAAAGAGG+AGG - Chr4:88096439-88096458 None:intergenic 50.0%
GGAAGAGGATAGAGATGCGA+AGG + Chr4:88095419-88095438 MsG0480023652.01.T01:CDS 50.0%
GGCTCAGGGGAAATATGATG+AGG + Chr4:88095347-88095366 MsG0480023652.01.T01:CDS 50.0%
GTGCAGGTGATTGCTGGTAA+AGG + Chr4:88097632-88097651 MsG0480023652.01.T01:intron 50.0%
GTGCGAGCTTCAGTTGCAAT+GGG + Chr4:88096490-88096509 MsG0480023652.01.T01:intron 50.0%
GTTGACGAGCTTCATCAAGC+TGG + Chr4:88097734-88097753 MsG0480023652.01.T01:CDS 50.0%
TAAGAGAGCTTCAACCTCGC+AGG + Chr4:88095873-88095892 MsG0480023652.01.T01:intron 50.0%
TGAAGCTGACCCCACTTAGT+GGG - Chr4:88096987-88097006 None:intergenic 50.0%
TGACCCCACTTAGTGGGATA+AGG - Chr4:88096981-88097000 None:intergenic 50.0%
TGCGAGCTTCAGTTGCAATG+GGG + Chr4:88096491-88096510 MsG0480023652.01.T01:intron 50.0%
TGTGCGAGCTTCAGTTGCAA+TGG + Chr4:88096489-88096508 MsG0480023652.01.T01:intron 50.0%
TTGCTGTGGTGAGGACGAAA+GGG + Chr4:88096107-88096126 MsG0480023652.01.T01:intron 50.0%
! AAGCGATGGGTTTACGTACC+GGG + Chr4:88095174-88095193 MsG0480023652.01.T01:CDS 50.0%
! AGTGATTGGTTGCTGTGGTG+AGG + Chr4:88096098-88096117 MsG0480023652.01.T01:intron 50.0%
! ATATGTTGGCTGGGGTAGGA+TGG + Chr4:88096372-88096391 MsG0480023652.01.T01:CDS 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + Chr4:88096973-88096992 MsG0480023652.01.T01:intron 50.0%
! GAAACGAACAAAGGCGCACT+TGG - Chr4:88095506-88095525 None:intergenic 50.0%
! GAAGCGATGGGTTTACGTAC+CGG + Chr4:88095173-88095192 MsG0480023652.01.T01:CDS 50.0%
! TGGCAGTTGGCATTGCTGTT+GGG + Chr4:88095709-88095728 MsG0480023652.01.T01:CDS 50.0%
! TTTGATGGATGAGGAGGACG+AGG + Chr4:88095398-88095417 MsG0480023652.01.T01:CDS 50.0%
!! GAAGAGGTTGATGCAGTTCC+TGG + Chr4:88095761-88095780 MsG0480023652.01.T01:intron 50.0%
!!! GTTTTTGAGGCTTCTTCGCG+CGG + Chr4:88095321-88095340 MsG0480023652.01.T01:CDS 50.0%
AAGCCTCCCTGCACTCTTCT+CGG - Chr4:88097706-88097725 None:intergenic 55.0%
AGCTTCAGTTGCAATGGGGG+AGG + Chr4:88096495-88096514 MsG0480023652.01.T01:intron 55.0%
ATGGACATCCGACAACCCCA+AGG + Chr4:88096178-88096197 MsG0480023652.01.T01:intron 55.0%
GCGAGCTTCAGTTGCAATGG+GGG + Chr4:88096492-88096511 MsG0480023652.01.T01:intron 55.0%
GTCTCTACAGTTGCGCGCAA+AGG - Chr4:88097506-88097525 None:intergenic 55.0%
GTGGCAGTTGGCATTGCTGT+TGG + Chr4:88095708-88095727 MsG0480023652.01.T01:CDS 55.0%
GTTGCTGTGGTGAGGACGAA+AGG + Chr4:88096106-88096125 MsG0480023652.01.T01:intron 55.0%
TGCATGGTGCAGGTGATTGC+TGG + Chr4:88097626-88097645 MsG0480023652.01.T01:intron 55.0%
TGCTGTGGTGAGGACGAAAG+GGG + Chr4:88096108-88096127 MsG0480023652.01.T01:intron 55.0%
TGGACATCCGACAACCCCAA+GGG + Chr4:88096179-88096198 MsG0480023652.01.T01:intron 55.0%
TTGGGGTTGTCGGATGTCCA+TGG - Chr4:88096179-88096198 None:intergenic 55.0%
! CGATGACCGAGAAGAGTGCA+GGG + Chr4:88097697-88097716 MsG0480023652.01.T01:CDS 55.0%
! GACGATATGTTGGCTGGGGT+AGG + Chr4:88096368-88096387 MsG0480023652.01.T01:CDS 55.0%
! GGCAGTTGGCATTGCTGTTG+GGG + Chr4:88095710-88095729 MsG0480023652.01.T01:CDS 55.0%
! TCGATGACCGAGAAGAGTGC+AGG + Chr4:88097696-88097715 MsG0480023652.01.T01:CDS 55.0%
!! AGGTTGATGCAGTTCCTGGG+AGG + Chr4:88095765-88095784 MsG0480023652.01.T01:intron 55.0%
!! ATGGTGGATCCTGAGCGCAT+AGG + Chr4:88095459-88095478 MsG0480023652.01.T01:CDS 55.0%
CAGTTGCAATGGGGGAGGAG+AGG + Chr4:88096500-88096519 MsG0480023652.01.T01:intron 60.0%
GGATGAGGAGGACGAGGAAG+AGG + Chr4:88095404-88095423 MsG0480023652.01.T01:CDS 60.0%
TGAGGCTTCTTCGCGCGGAT+TGG + Chr4:88095326-88095345 MsG0480023652.01.T01:CDS 60.0%
! CATTGCTGTTGGGGCACCCT+TGG + Chr4:88095719-88095738 MsG0480023652.01.T01:CDS 60.0%
! TGACCGAGAAGAGTGCAGGG+AGG + Chr4:88097700-88097719 MsG0480023652.01.T01:CDS 60.0%
!! TCTTCGCGCGGATTGGCTCA+GGG + Chr4:88095333-88095352 MsG0480023652.01.T01:CDS 60.0%
!! TTCTTCGCGCGGATTGGCTC+AGG + Chr4:88095332-88095351 MsG0480023652.01.T01:CDS 60.0%
! TGCTGTTGGGGCACCCTTGG+AGG + Chr4:88095722-88095741 MsG0480023652.01.T01:CDS 65.0%
!! CTTCGCGCGGATTGGCTCAG+GGG + Chr4:88095334-88095353 MsG0480023652.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 88095171 88097956 88095171 ID=MsG0480023652.01;Name=MsG0480023652.01
Chr4 mRNA 88095171 88097956 88095171 ID=MsG0480023652.01.T01;Parent=MsG0480023652.01;Name=MsG0480023652.01.T01;_AED=0.50;_eAED=0.57;_QI=0|0|0|1|1|1|5|0|267
Chr4 exon 88095171 88095541 88095171 ID=MsG0480023652.01.T01:exon:6224;Parent=MsG0480023652.01.T01
Chr4 exon 88095626 88095766 88095626 ID=MsG0480023652.01.T01:exon:6225;Parent=MsG0480023652.01.T01
Chr4 exon 88096357 88096483 88096357 ID=MsG0480023652.01.T01:exon:6226;Parent=MsG0480023652.01.T01
Chr4 exon 88097638 88097783 88097638 ID=MsG0480023652.01.T01:exon:6227;Parent=MsG0480023652.01.T01
Chr4 exon 88097938 88097956 88097938 ID=MsG0480023652.01.T01:exon:6228;Parent=MsG0480023652.01.T01
Chr4 CDS 88095171 88095541 88095171 ID=MsG0480023652.01.T01:cds;Parent=MsG0480023652.01.T01
Chr4 CDS 88095626 88095766 88095626 ID=MsG0480023652.01.T01:cds;Parent=MsG0480023652.01.T01
Chr4 CDS 88096357 88096483 88096357 ID=MsG0480023652.01.T01:cds;Parent=MsG0480023652.01.T01
Chr4 CDS 88097638 88097783 88097638 ID=MsG0480023652.01.T01:cds;Parent=MsG0480023652.01.T01
Chr4 CDS 88097938 88097956 88097938 ID=MsG0480023652.01.T01:cds;Parent=MsG0480023652.01.T01
Gene Sequence

>MsG0480023652.01.T01

ATGAAGCGATGGGTTTACGTACCGGGATGTTTAACTCGATTGCTAGTTATGTTCATGGGGATAATCAGTTGGATTCGTCTTATGGGGTTGGATGCTGTTTTGGTTCAGAATTTGATGGCTAAGATGCTTCATAATGGAACTGAATCTGTGGTTTTTGAGGCTTCTTCGCGCGGATTGGCTCAGGGGAAATATGATGAGGTTGATTTTGATGTTGCTGTTTTTACGAATTTGATGGATGAGGAGGACGAGGAAGAGGATAGAGATGCGAAGGCTAAGCTGTTTTCAAGGATGGTGGATCCTGAGCGCATAGGAAAGTTGTTAACATTGACGATCCAAGTGCGCCTTTGTTCGTTTCAATGGGGAGCCCTGAAGTTTGGTAATACACCTGCTGGGATACTGGAAATTTCGTCCGGTTTACTAGGAAGGCACAATGTTTACAACATTCTTGCTGCTGTGGCAGTTGGCATTGCTGTTGGGGCACCCTTGGAGGATATTGTTAGAGGGATGAAGAGTGGATATTTTGGACGATATGTTGGCTGGGGTAGGATGGACAATGCAAGAGTATCTGAAATATGGAGAGATGACTACTATCCTCCTCTTTCAAATGGTCCCAGGCTTTTTCTCCATGACATTAGGAGGGTGATTGCTGGTAAAGGCCATGAAACATATCAAATAGAAGGTGAGAAAAAGGATTTCTTCGATGACCGAGAAGAGTGCAGGGAGGCTTTGCAGTATGTTGACGAGCTTCATCAAGCTGGAATAGATACAAGTGAATTTCCATGGCGGTTACCAGAGAGCCACTGA

Protein sequence

>MsG0480023652.01.T01

MKRWVYVPGCLTRLLVMFMGIISWIRLMGLDAVLVQNLMAKMLHNGTESVVFEASSRGLAQGKYDEVDFDVAVFTNLMDEEDEEEDRDAKAKLFSRMVDPERIGKLLTLTIQVRLCSFQWGALKFGNTPAGILEISSGLLGRHNVYNILAAVAVGIAVGAPLEDIVRGMKSGYFGRYVGWGRMDNARVSEIWRDDYYPPLSNGPRLFLHDIRRVIAGKGHETYQIEGEKKDFFDDREECREALQYVDELHQAGIDTSEFPWRLPESH*