Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024566.01.T01 | XP_003611369.1 | 91.96 | 398 | 4 | 1 | 1 | 370 | 151 | 548 | 0 | 752 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024566.01.T01 | O23522 | 56.489 | 393 | 130 | 5 | 1 | 370 | 143 | 517 | 7.68E-149 | 433 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024566.01.T01 | G7JXH0 | 91.960 | 398 | 4 | 1 | 1 | 370 | 151 | 548 | 0.0 | 752 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001053.01 | MsG0580024566.01 | 0.800082 | 1.702649e-48 | 7.856729e-46 |
| MsG0280011105.01 | MsG0580024566.01 | 0.804977 | 1.667206e-49 | 8.716740e-47 |
| MsG0580024566.01 | MsG0580025045.01 | 0.806109 | 9.648629e-50 | 5.193309e-47 |
| MsG0580024566.01 | MsG0780039913.01 | 0.802423 | 5.650484e-49 | 2.766956e-46 |
| MsG0280006586.01 | MsG0580024566.01 | 0.800977 | 1.118823e-48 | 5.281649e-46 |
| MsG0280009509.01 | MsG0580024566.01 | 0.801076 | 1.067710e-48 | 5.052916e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024566.01.T01 | MTR_5g013230 | 91.960 | 398 | 4 | 1 | 1 | 370 | 151 | 548 | 0.0 | 752 |
| MsG0580024566.01.T01 | MTR_4g099510 | 66.667 | 396 | 85 | 4 | 1 | 368 | 145 | 521 | 0.0 | 528 |
| MsG0580024566.01.T01 | MTR_7g081620 | 43.597 | 367 | 153 | 6 | 1 | 316 | 85 | 448 | 3.17e-99 | 301 |
| MsG0580024566.01.T01 | MTR_7g081645 | 41.808 | 354 | 145 | 8 | 1 | 316 | 91 | 421 | 2.14e-90 | 278 |
| MsG0580024566.01.T01 | MTR_4g077070 | 35.359 | 362 | 172 | 6 | 1 | 317 | 116 | 460 | 1.14e-67 | 223 |
| MsG0580024566.01.T01 | MTR_7g096120 | 36.538 | 364 | 168 | 10 | 1 | 317 | 90 | 437 | 3.96e-65 | 215 |
| MsG0580024566.01.T01 | MTR_7g096140 | 35.989 | 364 | 170 | 10 | 1 | 317 | 90 | 437 | 2.16e-64 | 212 |
| MsG0580024566.01.T01 | MTR_2g015690 | 32.609 | 368 | 163 | 9 | 1 | 317 | 36 | 369 | 8.43e-51 | 175 |
| MsG0580024566.01.T01 | MTR_1995s0010 | 40.928 | 237 | 114 | 7 | 75 | 299 | 1 | 223 | 5.09e-47 | 160 |
| MsG0580024566.01.T01 | MTR_7g006400 | 33.053 | 357 | 175 | 12 | 1 | 324 | 121 | 446 | 1.69e-46 | 166 |
| MsG0580024566.01.T01 | MTR_4g080100 | 28.421 | 380 | 178 | 10 | 1 | 317 | 44 | 392 | 1.55e-40 | 148 |
| MsG0580024566.01.T01 | MTR_4g087810 | 29.919 | 371 | 168 | 10 | 1 | 319 | 29 | 359 | 5.28e-40 | 146 |
| MsG0580024566.01.T01 | MTR_4g087830 | 30.458 | 371 | 166 | 11 | 1 | 319 | 20 | 350 | 9.85e-40 | 145 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024566.01.T01 | AT4G16820 | 56.489 | 393 | 130 | 5 | 1 | 370 | 143 | 517 | 7.83e-150 | 433 |
| MsG0580024566.01.T01 | AT2G44810 | 46.875 | 352 | 147 | 6 | 1 | 318 | 12 | 357 | 1.14e-105 | 315 |
| MsG0580024566.01.T01 | AT2G44810 | 46.875 | 352 | 147 | 6 | 1 | 318 | 102 | 447 | 2.47e-104 | 315 |
| MsG0580024566.01.T01 | AT1G51440 | 38.028 | 355 | 150 | 8 | 2 | 305 | 104 | 439 | 9.66e-69 | 225 |
| MsG0580024566.01.T01 | AT1G30370 | 36.490 | 359 | 167 | 11 | 1 | 317 | 130 | 469 | 6.09e-66 | 218 |
| MsG0580024566.01.T01 | AT1G06800 | 36.957 | 368 | 163 | 9 | 1 | 317 | 101 | 450 | 3.07e-64 | 213 |
| MsG0580024566.01.T01 | AT1G06800 | 37.607 | 351 | 150 | 9 | 1 | 300 | 101 | 433 | 6.37e-64 | 210 |
| MsG0580024566.01.T01 | AT2G30550 | 37.249 | 349 | 159 | 9 | 1 | 303 | 117 | 451 | 1.30e-63 | 210 |
| MsG0580024566.01.T01 | AT2G30550 | 36.639 | 363 | 170 | 9 | 1 | 317 | 117 | 465 | 1.35e-62 | 209 |
| MsG0580024566.01.T01 | AT2G31690 | 34.211 | 342 | 158 | 12 | 1 | 299 | 104 | 421 | 2.35e-52 | 181 |
| MsG0580024566.01.T01 | AT1G05800 | 33.923 | 339 | 160 | 11 | 1 | 299 | 96 | 410 | 8.51e-52 | 179 |
| MsG0580024566.01.T01 | AT4G18550 | 31.536 | 371 | 164 | 11 | 1 | 317 | 35 | 369 | 3.68e-45 | 160 |
| MsG0580024566.01.T01 | AT4G18550 | 31.536 | 371 | 164 | 11 | 1 | 317 | 52 | 386 | 6.32e-45 | 160 |
| MsG0580024566.01.T01 | AT2G42690 | 30.831 | 373 | 174 | 10 | 1 | 317 | 20 | 364 | 1.29e-40 | 148 |
| MsG0580024566.01.T01 | AT1G06250 | 28.495 | 372 | 174 | 11 | 1 | 317 | 21 | 355 | 6.53e-38 | 141 |
| MsG0580024566.01.T01 | AT1G06250 | 30.797 | 276 | 140 | 7 | 58 | 317 | 1 | 241 | 3.41e-33 | 126 |
| MsG0580024566.01.T01 | AT4G18550 | 33.456 | 272 | 122 | 9 | 1 | 221 | 52 | 315 | 1.50e-31 | 122 |
Find 92 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCGGGTAAATCGACTAAT+TGG | 0.206931 | 5:-6421136 | None:intergenic |
| CTCTTAGCATTAGCTCTAAA+TGG | 0.258178 | 5:-6421764 | None:intergenic |
| CGCCTTTGTAAAGTTCAATA+AGG | 0.276950 | 5:-6421289 | None:intergenic |
| AGAGGCTTATTTACATTTAG+TGG | 0.289753 | 5:+6421718 | MsG0580024566.01.T01:CDS |
| ACTCAACTTTGGGCTTTGAT+TGG | 0.339758 | 5:-6421187 | None:intergenic |
| ACAGCCACGGGTGGCACGTT+TGG | 0.344135 | 5:-6421395 | None:intergenic |
| TAATTTCCTCGGCCACCAAT+AGG | 0.366166 | 5:-6421361 | None:intergenic |
| CGGCGAGAGGTTGTTAGATA+TGG | 0.368122 | 5:+6420790 | MsG0580024566.01.T01:CDS |
| CATAAATCCACACTCAACTT+TGG | 0.371336 | 5:-6421198 | None:intergenic |
| TGGCGCGACACTAGCCCTAT+TGG | 0.385796 | 5:+6421346 | MsG0580024566.01.T01:CDS |
| AACTTCCACTTGTCTTGAAT+GGG | 0.386150 | 5:+6421097 | MsG0580024566.01.T01:CDS |
| GTTGGAAGAGAACACTCCTT+TGG | 0.394244 | 5:+6421604 | MsG0580024566.01.T01:CDS |
| CGTGTTGGTAACAGAGCCTT+TGG | 0.394565 | 5:+6421437 | MsG0580024566.01.T01:CDS |
| TAAAAGAGAGATTGCAAGAA+TGG | 0.395214 | 5:+6421043 | MsG0580024566.01.T01:CDS |
| ATAAATCCACACTCAACTTT+GGG | 0.396883 | 5:-6421197 | None:intergenic |
| GGATGACCCAGCGTTCTAGC+TGG | 0.407435 | 5:+6420994 | MsG0580024566.01.T01:CDS |
| GGTTGTTAGATATGGTGATT+TGG | 0.409569 | 5:+6420798 | MsG0580024566.01.T01:CDS |
| GAACTTCCACTTGTCTTGAA+TGG | 0.412888 | 5:+6421096 | MsG0580024566.01.T01:CDS |
| AATTTCCTCGGCCACCAATA+GGG | 0.421437 | 5:-6421360 | None:intergenic |
| ATGAGCTTGTACAAGACAAA+AGG | 0.423174 | 5:+6421218 | MsG0580024566.01.T01:CDS |
| TTGGAAGAGAACACTCCTTT+GGG | 0.425192 | 5:+6421605 | MsG0580024566.01.T01:CDS |
| GAATTAAGCATAACCGTTAC+CGG | 0.425326 | 5:+6421314 | MsG0580024566.01.T01:CDS |
| AAGAATTCCAAGGTTGTTAG+TGG | 0.426321 | 5:+6421569 | MsG0580024566.01.T01:CDS |
| ACATTTAGTGGATGGATACA+TGG | 0.441165 | 5:+6421730 | MsG0580024566.01.T01:CDS |
| GATGAGGTGGCACCAGATCT+TGG | 0.447657 | 5:+6420969 | MsG0580024566.01.T01:intron |
| CCCGCACGTGCTAATTTCCT+CGG | 0.448005 | 5:-6421372 | None:intergenic |
| TAGACAGGGATCCATGTCTA+TGG | 0.450095 | 5:+6421904 | MsG0580024566.01.T01:CDS |
| CACTTCTTCAACAACGGACT+CGG | 0.454486 | 5:-6421261 | None:intergenic |
| CTTGTCTAATCTTAGTAGAC+AGG | 0.459042 | 5:+6421889 | MsG0580024566.01.T01:CDS |
| CTAGTGTCGCGCCAAGGCTA+TGG | 0.467757 | 5:-6421337 | None:intergenic |
| GTCTGAGTCTGAGCGTCCTC+GGG | 0.477426 | 5:-6421152 | None:intergenic |
| TCGCCGGAGGTTGTCATCCA+AGG | 0.480124 | 5:-6420773 | None:intergenic |
| GAAGGGGATGTTAGATCCCT+TGG | 0.480349 | 5:+6420756 | None:intergenic |
| TGGGTCATCCAACCAAGATC+TGG | 0.480411 | 5:-6420981 | None:intergenic |
| GCTTCAGTTGTTGACATGGC+AGG | 0.485069 | 5:-6420853 | None:intergenic |
| AGTCTGAGTCTGAGCGTCCT+CGG | 0.490474 | 5:-6421153 | None:intergenic |
| AAAAGAGAGATTGCAAGAAT+GGG | 0.490721 | 5:+6421044 | MsG0580024566.01.T01:CDS |
| ACACACAAGACGTGATTACA+AGG | 0.492272 | 5:+6421504 | MsG0580024566.01.T01:CDS |
| CAACGACACCTCTTGATGAT+GGG | 0.496077 | 5:-6420878 | None:intergenic |
| CTCGGGTAAATCGACTAATT+GGG | 0.499666 | 5:-6421135 | None:intergenic |
| AACAACTCCACTAACAACCT+TGG | 0.499945 | 5:-6421576 | None:intergenic |
| GCAACGACACCTCTTGATGA+TGG | 0.502309 | 5:-6420879 | None:intergenic |
| TGAGCTTGTACAAGACAAAA+GGG | 0.503559 | 5:+6421219 | MsG0580024566.01.T01:CDS |
| CCTTTGGGATATTCACATGT+TGG | 0.504000 | 5:+6421620 | MsG0580024566.01.T01:CDS |
| CTTCAACAACGGACTCGGAT+AGG | 0.508893 | 5:-6421256 | None:intergenic |
| TCAGCATCGGGCTTCAAGTA+AGG | 0.510052 | 5:-6421674 | None:intergenic |
| CAACAAGCTATGTCAGCATC+GGG | 0.515189 | 5:-6421686 | None:intergenic |
| GCTTATTTACATTTAGTGGA+TGG | 0.516513 | 5:+6421722 | MsG0580024566.01.T01:CDS |
| GATGACCCAGCGTTCTAGCT+GGG | 0.518537 | 5:+6420995 | MsG0580024566.01.T01:CDS |
| ACCCAGCGTTCTAGCTGGGT+TGG | 0.519887 | 5:+6420999 | MsG0580024566.01.T01:CDS |
| TTGTATACTAGTAAGGCTAA+AGG | 0.526986 | 5:+6421833 | MsG0580024566.01.T01:CDS |
| ATCCCTTGGATGACAACCTC+CGG | 0.528647 | 5:+6420770 | MsG0580024566.01.T01:CDS |
| ATCCAACCCAGCTAGAACGC+TGG | 0.529696 | 5:-6421001 | None:intergenic |
| GACGTGATTACAAGGGTGCC+AGG | 0.535150 | 5:+6421512 | MsG0580024566.01.T01:CDS |
| CGCGACACTAGCCCTATTGG+TGG | 0.536052 | 5:+6421349 | MsG0580024566.01.T01:CDS |
| TAGTGGAGTTGTTGATATGT+TGG | 0.537325 | 5:+6421586 | MsG0580024566.01.T01:CDS |
| ACCGTTACCGGCCATAGCCT+TGG | 0.539736 | 5:+6421326 | MsG0580024566.01.T01:CDS |
| ACTAGCCCTATTGGTGGCCG+AGG | 0.548502 | 5:+6421355 | MsG0580024566.01.T01:CDS |
| ATTCATGAAGATGATGGACT+AGG | 0.548753 | 5:-6421938 | None:intergenic |
| GATATTGTGATATCTCTTCG+TGG | 0.549518 | 5:+6421074 | MsG0580024566.01.T01:CDS |
| TCCAACCCAGCTAGAACGCT+GGG | 0.550701 | 5:-6421000 | None:intergenic |
| TTCAGCCCATTCAAGACAAG+TGG | 0.553127 | 5:-6421102 | None:intergenic |
| GGACGCTCAGACTCAGACTC+AGG | 0.556991 | 5:+6421157 | MsG0580024566.01.T01:CDS |
| CGCCGGAGGTTGTCATCCAA+GGG | 0.557417 | 5:-6420772 | None:intergenic |
| ACAACAAGCTATGTCAGCAT+CGG | 0.563181 | 5:-6421687 | None:intergenic |
| CGGGCCAAACGTGCCACCCG+TGG | 0.563469 | 5:+6421391 | MsG0580024566.01.T01:CDS |
| CGCCTTATTGAACTTTACAA+AGG | 0.564214 | 5:+6421287 | MsG0580024566.01.T01:CDS |
| AGCTTGTTGTCATGATCTAG+AGG | 0.571065 | 5:+6421700 | MsG0580024566.01.T01:CDS |
| GCCGAGGAAATTAGCACGTG+CGG | 0.571449 | 5:+6421371 | MsG0580024566.01.T01:CDS |
| GGGTGCTTCAGTTGTTGACA+TGG | 0.576279 | 5:-6420857 | None:intergenic |
| CCGAGGAAATTAGCACGTGC+GGG | 0.576932 | 5:+6421372 | MsG0580024566.01.T01:CDS |
| TCATTTGGCGGACCTCGTGT+TGG | 0.577348 | 5:+6421422 | MsG0580024566.01.T01:CDS |
| CATATCTAACAACCTCTCGC+CGG | 0.581786 | 5:-6420789 | None:intergenic |
| GCCAAGGCTATGGCCGGTAA+CGG | 0.591069 | 5:-6421327 | None:intergenic |
| AACGACACCTCTTGATGATG+GGG | 0.596360 | 5:-6420877 | None:intergenic |
| AGGTGGCACCAGATCTTGGT+TGG | 0.618491 | 5:+6420973 | MsG0580024566.01.T01:intron |
| GGATGACAACCTCCGGCGAG+AGG | 0.618831 | 5:+6420777 | MsG0580024566.01.T01:CDS |
| CAGACTCAGACTCAGGCACA+AGG | 0.619166 | 5:+6421164 | MsG0580024566.01.T01:CDS |
| TCAAAGCCCAAAGTTGAGTG+TGG | 0.627127 | 5:+6421191 | MsG0580024566.01.T01:CDS |
| ACAACAAGCAGCCATAGACA+TGG | 0.628855 | 5:-6421915 | None:intergenic |
| GCGTCGCACTTCTTCAACAA+CGG | 0.630718 | 5:-6421267 | None:intergenic |
| TTGTCTAATCTTAGTAGACA+GGG | 0.632883 | 5:+6421890 | MsG0580024566.01.T01:CDS |
| ATCTAACAACCTCTCGCCGG+AGG | 0.634684 | 5:-6420786 | None:intergenic |
| TGAAGCACCCCATCATCAAG+AGG | 0.635362 | 5:+6420870 | MsG0580024566.01.T01:CDS |
| TGTCGCGCCAAGGCTATGGC+CGG | 0.642253 | 5:-6421333 | None:intergenic |
| TCTGTTAATCTTAATAGACA+AGG | 0.646433 | 5:+6421860 | MsG0580024566.01.T01:CDS |
| ATAGGGCTAGTGTCGCGCCA+AGG | 0.667674 | 5:-6421343 | None:intergenic |
| CCAATTAGTCGATTTACCCG+AGG | 0.667868 | 5:+6421136 | MsG0580024566.01.T01:CDS |
| CCAACATGTGAATATCCCAA+AGG | 0.681313 | 5:-6421620 | None:intergenic |
| GAGCTTGTACAAGACAAAAG+GGG | 0.708452 | 5:+6421220 | MsG0580024566.01.T01:CDS |
| CACACAAGACGTGATTACAA+GGG | 0.729372 | 5:+6421505 | MsG0580024566.01.T01:CDS |
| AAGGCTCTGTTACCAACACG+AGG | 0.743509 | 5:-6421434 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGTTGTATACTAGTA+AGG | + | Chr5:6421826-6421845 | MsG0580024566.01.T01:CDS | 20.0% |
| !! | AGAAAAAATTAAGAATTCCA+AGG | + | Chr5:6421559-6421578 | MsG0580024566.01.T01:CDS | 20.0% |
| ! | ATCAATTGGATTACCTAAAT+GGG | + | Chr5:6420944-6420963 | MsG0580024566.01.T01:intron | 25.0% |
| ! | TCTGTTAATCTTAATAGACA+AGG | + | Chr5:6421860-6421879 | MsG0580024566.01.T01:CDS | 25.0% |
| AAAAGAGAGATTGCAAGAAT+GGG | + | Chr5:6421044-6421063 | MsG0580024566.01.T01:CDS | 30.0% | |
| AGAGGCTTATTTACATTTAG+TGG | + | Chr5:6421718-6421737 | MsG0580024566.01.T01:CDS | 30.0% | |
| ATAAATCCACACTCAACTTT+GGG | - | Chr5:6421200-6421219 | None:intergenic | 30.0% | |
| CATCAATTGGATTACCTAAA+TGG | + | Chr5:6420943-6420962 | MsG0580024566.01.T01:intron | 30.0% | |
| GCTTATTTACATTTAGTGGA+TGG | + | Chr5:6421722-6421741 | MsG0580024566.01.T01:CDS | 30.0% | |
| TAAAAGAGAGATTGCAAGAA+TGG | + | Chr5:6421043-6421062 | MsG0580024566.01.T01:CDS | 30.0% | |
| TTGTATACTAGTAAGGCTAA+AGG | + | Chr5:6421833-6421852 | MsG0580024566.01.T01:CDS | 30.0% | |
| TTGTCTAATCTTAGTAGACA+GGG | + | Chr5:6421890-6421909 | MsG0580024566.01.T01:CDS | 30.0% | |
| ! | GGTTACTTTATAAGATCTTC+CGG | - | Chr5:6420904-6420923 | None:intergenic | 30.0% |
| AACTTCCACTTGTCTTGAAT+GGG | + | Chr5:6421097-6421116 | MsG0580024566.01.T01:CDS | 35.0% | |
| AAGAATTCCAAGGTTGTTAG+TGG | + | Chr5:6421569-6421588 | MsG0580024566.01.T01:CDS | 35.0% | |
| ATGAGCTTGTACAAGACAAA+AGG | + | Chr5:6421218-6421237 | MsG0580024566.01.T01:CDS | 35.0% | |
| CATAAATCCACACTCAACTT+TGG | - | Chr5:6421201-6421220 | None:intergenic | 35.0% | |
| CGCCTTTGTAAAGTTCAATA+AGG | - | Chr5:6421292-6421311 | None:intergenic | 35.0% | |
| CTTGTCTAATCTTAGTAGAC+AGG | + | Chr5:6421889-6421908 | MsG0580024566.01.T01:CDS | 35.0% | |
| GAATTAAGCATAACCGTTAC+CGG | + | Chr5:6421314-6421333 | MsG0580024566.01.T01:CDS | 35.0% | |
| GATATTGTGATATCTCTTCG+TGG | + | Chr5:6421074-6421093 | MsG0580024566.01.T01:CDS | 35.0% | |
| GGTTGTTAGATATGGTGATT+TGG | + | Chr5:6420798-6420817 | MsG0580024566.01.T01:CDS | 35.0% | |
| TAGTGGAGTTGTTGATATGT+TGG | + | Chr5:6421586-6421605 | MsG0580024566.01.T01:CDS | 35.0% | |
| TCCTCGCTTAAAAATATTCC+TGG | - | Chr5:6421533-6421552 | None:intergenic | 35.0% | |
| TGAGCTTGTACAAGACAAAA+GGG | + | Chr5:6421219-6421238 | MsG0580024566.01.T01:CDS | 35.0% | |
| ! | ACATTTAGTGGATGGATACA+TGG | + | Chr5:6421730-6421749 | MsG0580024566.01.T01:CDS | 35.0% |
| ! | CGCCTTATTGAACTTTACAA+AGG | + | Chr5:6421287-6421306 | MsG0580024566.01.T01:CDS | 35.0% |
| !! | AGGTAATCCAATTGATGATG+TGG | - | Chr5:6420940-6420959 | None:intergenic | 35.0% |
| !! | ATTACCTAAATGGGTTGATG+AGG | + | Chr5:6420953-6420972 | MsG0580024566.01.T01:intron | 35.0% |
| !! | CTCTTAGCATTAGCTCTAAA+TGG | - | Chr5:6421767-6421786 | None:intergenic | 35.0% |
| !! | CTTTTCAAGATGTTCTCCAA+AGG | - | Chr5:6421456-6421475 | None:intergenic | 35.0% |
| AACAACTCCACTAACAACCT+TGG | - | Chr5:6421579-6421598 | None:intergenic | 40.0% | |
| ACAACAAGCTATGTCAGCAT+CGG | - | Chr5:6421690-6421709 | None:intergenic | 40.0% | |
| ACACACAAGACGTGATTACA+AGG | + | Chr5:6421504-6421523 | MsG0580024566.01.T01:CDS | 40.0% | |
| CACACAAGACGTGATTACAA+GGG | + | Chr5:6421505-6421524 | MsG0580024566.01.T01:CDS | 40.0% | |
| CCAAATGAAAAAACAGCCAC+GGG | - | Chr5:6421410-6421429 | None:intergenic | 40.0% | |
| CCAACATGTGAATATCCCAA+AGG | - | Chr5:6421623-6421642 | None:intergenic | 40.0% | |
| CTCGGGTAAATCGACTAATT+GGG | - | Chr5:6421138-6421157 | None:intergenic | 40.0% | |
| CTGTATGCCACATCATCAAT+TGG | + | Chr5:6420930-6420949 | MsG0580024566.01.T01:intron | 40.0% | |
| GAACTTCCACTTGTCTTGAA+TGG | + | Chr5:6421096-6421115 | MsG0580024566.01.T01:CDS | 40.0% | |
| GAGCTTGTACAAGACAAAAG+GGG | + | Chr5:6421220-6421239 | MsG0580024566.01.T01:CDS | 40.0% | |
| GCCAAATGAAAAAACAGCCA+CGG | - | Chr5:6421411-6421430 | None:intergenic | 40.0% | |
| TTGGAAGAGAACACTCCTTT+GGG | + | Chr5:6421605-6421624 | MsG0580024566.01.T01:CDS | 40.0% | |
| ! | ACTCAACTTTGGGCTTTGAT+TGG | - | Chr5:6421190-6421209 | None:intergenic | 40.0% |
| !! | AGCTTGTTGTCATGATCTAG+AGG | + | Chr5:6421700-6421719 | MsG0580024566.01.T01:CDS | 40.0% |
| !! | CCTTTGGGATATTCACATGT+TGG | + | Chr5:6421620-6421639 | MsG0580024566.01.T01:CDS | 40.0% |
| !! | GCCAGGAATATTTTTAAGCG+AGG | + | Chr5:6421529-6421548 | MsG0580024566.01.T01:CDS | 40.0% |
| !!! | GTGGCTGTTTTTTCATTTGG+CGG | + | Chr5:6421410-6421429 | MsG0580024566.01.T01:CDS | 40.0% |
| AATGAAAAAACAGCCACGGG+TGG | - | Chr5:6421407-6421426 | None:intergenic | 45.0% | |
| AATTTCCTCGGCCACCAATA+GGG | - | Chr5:6421363-6421382 | None:intergenic | 45.0% | |
| ACAACAAGCAGCCATAGACA+TGG | - | Chr5:6421918-6421937 | None:intergenic | 45.0% | |
| CAACAAGCTATGTCAGCATC+GGG | - | Chr5:6421689-6421708 | None:intergenic | 45.0% | |
| CATATCTAACAACCTCTCGC+CGG | - | Chr5:6420792-6420811 | None:intergenic | 45.0% | |
| CCTCGGGTAAATCGACTAAT+TGG | - | Chr5:6421139-6421158 | None:intergenic | 45.0% | |
| GTTGGAAGAGAACACTCCTT+TGG | + | Chr5:6421604-6421623 | MsG0580024566.01.T01:CDS | 45.0% | |
| TAATTTCCTCGGCCACCAAT+AGG | - | Chr5:6421364-6421383 | None:intergenic | 45.0% | |
| TAGACAGGGATCCATGTCTA+TGG | + | Chr5:6421904-6421923 | MsG0580024566.01.T01:CDS | 45.0% | |
| TCAAAGCCCAAAGTTGAGTG+TGG | + | Chr5:6421191-6421210 | MsG0580024566.01.T01:CDS | 45.0% | |
| TGATGTGGCATACAGACTCT+TGG | - | Chr5:6420925-6420944 | None:intergenic | 45.0% | |
| TTCAGCCCATTCAAGACAAG+TGG | - | Chr5:6421105-6421124 | None:intergenic | 45.0% | |
| ! | CAACGACACCTCTTGATGAT+GGG | - | Chr5:6420881-6420900 | None:intergenic | 45.0% |
| ! | CACTTCTTCAACAACGGACT+CGG | - | Chr5:6421264-6421283 | None:intergenic | 45.0% |
| ! | CCAATTAGTCGATTTACCCG+AGG | + | Chr5:6421136-6421155 | MsG0580024566.01.T01:CDS | 45.0% |
| !! | AACGACACCTCTTGATGATG+GGG | - | Chr5:6420880-6420899 | None:intergenic | 45.0% |
| !! | ACCTAAATGGGTTGATGAGG+TGG | + | Chr5:6420956-6420975 | MsG0580024566.01.T01:intron | 45.0% |
| !!! | CCCGTGGCTGTTTTTTCATT+TGG | + | Chr5:6421407-6421426 | MsG0580024566.01.T01:CDS | 45.0% |
| AAGGCTCTGTTACCAACACG+AGG | - | Chr5:6421437-6421456 | None:intergenic | 50.0% | |
| ATCCCTTGGATGACAACCTC+CGG | + | Chr5:6420770-6420789 | MsG0580024566.01.T01:CDS | 50.0% | |
| CGGCGAGAGGTTGTTAGATA+TGG | + | Chr5:6420790-6420809 | MsG0580024566.01.T01:CDS | 50.0% | |
| GCAACGACACCTCTTGATGA+TGG | - | Chr5:6420882-6420901 | None:intergenic | 50.0% | |
| GCCACCTCATCAACCCATTT+AGG | - | Chr5:6420960-6420979 | None:intergenic | 50.0% | |
| GCGTCGCACTTCTTCAACAA+CGG | - | Chr5:6421270-6421289 | None:intergenic | 50.0% | |
| GCTTCAGTTGTTGACATGGC+AGG | - | Chr5:6420856-6420875 | None:intergenic | 50.0% | |
| GGGTGCTTCAGTTGTTGACA+TGG | - | Chr5:6420860-6420879 | None:intergenic | 50.0% | |
| TGGGTCATCCAACCAAGATC+TGG | - | Chr5:6420984-6421003 | None:intergenic | 50.0% | |
| ! | CTTCAACAACGGACTCGGAT+AGG | - | Chr5:6421259-6421278 | None:intergenic | 50.0% |
| ! | TCAGCATCGGGCTTCAAGTA+AGG | - | Chr5:6421677-6421696 | None:intergenic | 50.0% |
| ! | TGAAGCACCCCATCATCAAG+AGG | + | Chr5:6420870-6420889 | MsG0580024566.01.T01:CDS | 50.0% |
| !! | CGTGTTGGTAACAGAGCCTT+TGG | + | Chr5:6421437-6421456 | MsG0580024566.01.T01:CDS | 50.0% |
| !! | TCATCAAGAGGTGTCGTTGC+CGG | + | Chr5:6420882-6420901 | MsG0580024566.01.T01:intron | 50.0% |
| AGGTGGCACCAGATCTTGGT+TGG | + | Chr5:6420973-6420992 | MsG0580024566.01.T01:intron | 55.0% | |
| AGTCTGAGTCTGAGCGTCCT+CGG | - | Chr5:6421156-6421175 | None:intergenic | 55.0% | |
| ATCCAACCCAGCTAGAACGC+TGG | - | Chr5:6421004-6421023 | None:intergenic | 55.0% | |
| ATCTAACAACCTCTCGCCGG+AGG | - | Chr5:6420789-6420808 | None:intergenic | 55.0% | |
| CAGACTCAGACTCAGGCACA+AGG | + | Chr5:6421164-6421183 | MsG0580024566.01.T01:CDS | 55.0% | |
| CCCGCACGTGCTAATTTCCT+CGG | - | Chr5:6421375-6421394 | None:intergenic | 55.0% | |
| CCGAGGAAATTAGCACGTGC+GGG | + | Chr5:6421372-6421391 | MsG0580024566.01.T01:CDS | 55.0% | |
| GATGAGGTGGCACCAGATCT+TGG | + | Chr5:6420969-6420988 | MsG0580024566.01.T01:intron | 55.0% | |
| GCCGAGGAAATTAGCACGTG+CGG | + | Chr5:6421371-6421390 | MsG0580024566.01.T01:CDS | 55.0% | |
| TCCAACCCAGCTAGAACGCT+GGG | - | Chr5:6421003-6421022 | None:intergenic | 55.0% | |
| ! | GATGACCCAGCGTTCTAGCT+GGG | + | Chr5:6420995-6421014 | MsG0580024566.01.T01:CDS | 55.0% |
| ! | TCATTTGGCGGACCTCGTGT+TGG | + | Chr5:6421422-6421441 | MsG0580024566.01.T01:CDS | 55.0% |
| !! | GACGTGATTACAAGGGTGCC+AGG | + | Chr5:6421512-6421531 | MsG0580024566.01.T01:CDS | 55.0% |
| ACCGTTACCGGCCATAGCCT+TGG | + | Chr5:6421326-6421345 | MsG0580024566.01.T01:CDS | 60.0% | |
| CGCCGGAGGTTGTCATCCAA+GGG | - | Chr5:6420775-6420794 | None:intergenic | 60.0% | |
| CGCGACACTAGCCCTATTGG+TGG | + | Chr5:6421349-6421368 | MsG0580024566.01.T01:CDS | 60.0% | |
| CTAGTGTCGCGCCAAGGCTA+TGG | - | Chr5:6421340-6421359 | None:intergenic | 60.0% | |
| GCCAAGGCTATGGCCGGTAA+CGG | - | Chr5:6421330-6421349 | None:intergenic | 60.0% | |
| GGACGCTCAGACTCAGACTC+AGG | + | Chr5:6421157-6421176 | MsG0580024566.01.T01:CDS | 60.0% | |
| GGATGACCCAGCGTTCTAGC+TGG | + | Chr5:6420994-6421013 | MsG0580024566.01.T01:CDS | 60.0% | |
| GTCTGAGTCTGAGCGTCCTC+GGG | - | Chr5:6421155-6421174 | None:intergenic | 60.0% | |
| TCGCCGGAGGTTGTCATCCA+AGG | - | Chr5:6420776-6420795 | None:intergenic | 60.0% | |
| TGGCGCGACACTAGCCCTAT+TGG | + | Chr5:6421346-6421365 | MsG0580024566.01.T01:CDS | 60.0% | |
| ! | ACCCAGCGTTCTAGCTGGGT+TGG | + | Chr5:6420999-6421018 | MsG0580024566.01.T01:CDS | 60.0% |
| ! | ACTAGCCCTATTGGTGGCCG+AGG | + | Chr5:6421355-6421374 | MsG0580024566.01.T01:CDS | 60.0% |
| ! | ATAGGGCTAGTGTCGCGCCA+AGG | - | Chr5:6421346-6421365 | None:intergenic | 60.0% |
| ACAGCCACGGGTGGCACGTT+TGG | - | Chr5:6421398-6421417 | None:intergenic | 65.0% | |
| GGATGACAACCTCCGGCGAG+AGG | + | Chr5:6420777-6420796 | MsG0580024566.01.T01:CDS | 65.0% | |
| TGTCGCGCCAAGGCTATGGC+CGG | - | Chr5:6421336-6421355 | None:intergenic | 65.0% | |
| CGGGCCAAACGTGCCACCCG+TGG | + | Chr5:6421391-6421410 | MsG0580024566.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 6420763 | 6421958 | 6420763 | ID=MsG0580024566.01;Name=MsG0580024566.01 |
| Chr5 | mRNA | 6420763 | 6421958 | 6420763 | ID=MsG0580024566.01.T01;Parent=MsG0580024566.01;Name=MsG0580024566.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|0|0|2|0|370 |
| Chr5 | exon | 6420763 | 6420891 | 6420763 | ID=MsG0580024566.01.T01:exon:1565;Parent=MsG0580024566.01.T01 |
| Chr5 | exon | 6420975 | 6421958 | 6420975 | ID=MsG0580024566.01.T01:exon:1566;Parent=MsG0580024566.01.T01 |
| Chr5 | CDS | 6420763 | 6420891 | 6420763 | ID=MsG0580024566.01.T01:cds;Parent=MsG0580024566.01.T01 |
| Chr5 | CDS | 6420975 | 6421958 | 6420975 | ID=MsG0580024566.01.T01:cds;Parent=MsG0580024566.01.T01 |
| Gene Sequence |
| Protein sequence |
