AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280011105.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011105.01.T01 MTR_2g098890 100.000 152 0 0 1 152 60 211 1.13e-107 305
MsG0280011105.01.T01 MTR_4g067270 83.553 152 23 1 1 152 1 150 4.00e-87 251
MsG0280011105.01.T01 MTR_7g089760 69.333 150 44 1 1 150 1 148 1.38e-62 189
MsG0280011105.01.T01 MTR_4g115170 47.771 157 68 2 5 147 64 220 1.86e-38 130
MsG0280011105.01.T01 MTR_5g079340 40.714 140 78 2 4 143 3 137 1.66e-31 110
MsG0280011105.01.T01 MTR_8g107110 42.958 142 76 2 2 143 21 157 4.79e-31 109
MsG0280011105.01.T01 MTR_3g067610 39.161 143 79 2 1 143 1 135 6.91e-30 106
MsG0280011105.01.T01 MTR_3g067610 42.466 73 40 1 77 149 2 72 5.46e-12 60.1
MsG0280011105.01.T01 MTR_1g032070 40.816 147 83 2 5 151 46 188 1.31e-29 107
MsG0280011105.01.T01 MTR_1g046950 41.429 140 80 1 4 143 3 140 1.63e-29 105
MsG0280011105.01.T01 MTR_7g075040 40.667 150 82 3 3 146 45 193 3.92e-29 105
MsG0280011105.01.T01 MTR_8g066630 34.247 146 93 2 4 148 16 159 3.71e-28 102
MsG0280011105.01.T01 MTR_7g074240 40.816 147 79 2 6 144 25 171 9.05e-28 102
MsG0280011105.01.T01 MTR_7g087610 42.143 140 77 2 4 143 11 146 9.50e-28 100
MsG0280011105.01.T01 MTR_6g025320 42.143 140 77 2 4 143 11 146 1.60e-27 100
MsG0280011105.01.T01 MTR_5g088320 42.143 140 77 2 4 143 11 146 1.63e-27 100
MsG0280011105.01.T01 MTR_5g088320 43.478 69 37 1 75 143 7 73 4.93e-11 57.8
MsG0280011105.01.T01 MTR_8g105230 40.845 142 80 2 5 146 36 173 4.70e-27 100
MsG0280011105.01.T01 MTR_1g047100 39.286 140 82 2 4 143 3 139 4.29e-26 96.7
MsG0280011105.01.T01 MTR_5g017510 40.000 145 79 4 4 146 47 185 6.06e-26 97.4
MsG0280011105.01.T01 MTR_5g017560 40.000 145 79 4 4 146 47 185 6.06e-26 97.4
MsG0280011105.01.T01 MTR_8g036075 39.456 147 83 3 5 146 49 194 8.64e-26 97.4
MsG0280011105.01.T01 MTR_5g017550 38.462 143 83 2 4 146 47 184 1.46e-25 96.7
MsG0280011105.01.T01 MTR_1g076650 39.568 139 80 2 5 143 12 146 8.96e-25 93.2
MsG0280011105.01.T01 MTR_1g076650 46.377 69 35 1 75 143 7 73 7.93e-12 59.7
MsG0280011105.01.T01 MTR_6g079570 37.931 145 84 3 2 145 23 162 1.20e-24 93.6
MsG0280011105.01.T01 MTR_1g041285 39.161 143 83 2 5 147 12 150 1.28e-24 92.8
MsG0280011105.01.T01 MTR_7g090450 37.589 141 85 3 5 143 73 212 1.62e-23 92.0
MsG0280011105.01.T01 MTR_4g086260 37.143 140 82 2 4 143 56 189 1.01e-22 89.4
MsG0280011105.01.T01 MTR_6g023460 34.559 136 84 2 8 143 11 141 1.34e-22 87.4
MsG0280011105.01.T01 MTR_4g103655 36.691 139 83 2 5 143 6 139 8.03e-22 85.5
MsG0280011105.01.T01 MTR_1g030440 36.424 151 80 3 1 143 18 160 1.74e-21 85.5
MsG0280011105.01.T01 MTR_4g103650 35.971 139 84 2 5 143 2 135 5.15e-21 83.2
MsG0280011105.01.T01 MTR_1g071150 38.129 139 81 2 5 143 12 145 8.81e-21 83.2
MsG0280011105.01.T01 MTR_4g103630 35.252 139 85 2 5 143 6 139 1.65e-20 82.0
MsG0280011105.01.T01 MTR_4g112460 34.028 144 87 3 4 144 10 148 5.66e-20 81.6
MsG0280011105.01.T01 MTR_3g089090 34.286 140 85 3 6 144 6 139 1.48e-19 79.7
MsG0280011105.01.T01 MTR_3g089070 34.286 140 85 3 6 144 7 140 1.58e-19 79.7
MsG0280011105.01.T01 MTR_0168s0120 41.228 114 63 2 30 143 1 110 1.88e-19 78.6
MsG0280011105.01.T01 MTR_6g025320 41.228 114 63 2 30 143 1 110 1.88e-19 78.6
MsG0280011105.01.T01 MTR_3g088655 34.395 157 83 3 1 143 4 154 3.32e-19 79.3
MsG0280011105.01.T01 MTR_1g096490 34.752 141 85 3 6 146 336 469 4.58e-19 82.8
MsG0280011105.01.T01 MTR_4g066660 33.099 142 89 2 6 147 378 513 6.14e-19 82.8
MsG0280011105.01.T01 MTR_5g008705 33.333 132 84 2 12 143 1 128 2.10e-18 76.3
MsG0280011105.01.T01 MTR_1g026190 31.206 141 91 2 6 146 388 522 5.38e-18 80.1
MsG0280011105.01.T01 MTR_5g092810 33.333 141 88 2 6 146 398 532 6.37e-18 79.7
MsG0280011105.01.T01 MTR_7g074020 31.250 144 95 2 5 148 30 169 8.16e-18 75.9
MsG0280011105.01.T01 MTR_7g115040 41.007 139 78 2 5 143 12 146 9.58e-18 75.1
MsG0280011105.01.T01 MTR_1g054865 31.655 139 88 2 6 144 467 598 1.84e-17 78.6
MsG0280011105.01.T01 MTR_3g051770 31.724 145 92 2 6 146 389 530 1.84e-17 78.6
MsG0280011105.01.T01 MTR_8g069915 30.070 143 92 3 5 144 12 149 2.89e-17 74.3
MsG0280011105.01.T01 MTR_5g009830 34.043 141 87 2 6 146 372 506 3.16e-17 77.8
MsG0280011105.01.T01 MTR_6g007613 31.944 144 94 2 5 148 29 168 3.98e-17 74.3
MsG0280011105.01.T01 MTR_4g132070 31.915 141 90 2 6 146 397 531 5.45e-17 77.0
MsG0280011105.01.T01 MTR_5g089320 32.624 141 89 2 6 146 374 508 5.45e-17 77.0
MsG0280011105.01.T01 MTR_3g098090 31.206 141 90 2 6 146 338 471 7.45e-17 76.6
MsG0280011105.01.T01 MTR_8g095440 32.624 141 88 2 6 146 336 469 1.84e-16 75.5
MsG0280011105.01.T01 MTR_7g091890 33.333 141 89 2 6 146 364 499 1.93e-16 75.5
MsG0280011105.01.T01 MTR_4g127560 49.315 73 37 0 72 144 122 194 2.76e-16 72.4
MsG0280011105.01.T01 MTR_8g099095 33.333 141 88 2 6 146 372 506 3.28e-16 74.7
MsG0280011105.01.T01 MTR_0028s0170 31.915 141 90 2 6 146 384 518 3.51e-16 74.7
MsG0280011105.01.T01 MTR_3g098070 30.496 141 91 2 6 146 335 468 7.80e-16 73.6
MsG0280011105.01.T01 MTR_1g041150 31.915 141 89 2 6 146 424 557 9.29e-16 73.6
MsG0280011105.01.T01 MTR_7g011010 34.375 128 70 3 17 144 85 198 1.64e-15 70.5
MsG0280011105.01.T01 MTR_3g083470 31.944 144 84 3 4 147 92 221 2.49e-15 70.5
MsG0280011105.01.T01 MTR_8g078270 32.168 143 91 3 2 143 50 187 3.31e-15 69.7
MsG0280011105.01.T01 MTR_6g007613 34.286 105 67 1 5 109 29 131 4.03e-15 68.6
MsG0280011105.01.T01 MTR_4g132040 29.787 141 93 2 6 146 401 535 5.62e-15 71.2
MsG0280011105.01.T01 MTR_5g099240 34.043 141 86 3 6 146 402 535 8.90e-15 70.9
MsG0280011105.01.T01 MTR_5g099240 33.333 141 87 2 6 146 330 463 9.12e-15 70.9
MsG0280011105.01.T01 MTR_4g082050 51.515 66 30 1 79 144 76 139 1.02e-14 67.4
MsG0280011105.01.T01 MTR_1g055255 31.206 141 90 2 6 146 430 563 1.03e-14 70.5
MsG0280011105.01.T01 MTR_5g008695 34.513 113 72 1 30 142 2 112 1.17e-14 66.2
MsG0280011105.01.T01 MTR_7g074020 30.894 123 81 2 5 127 30 148 2.76e-14 66.6
MsG0280011105.01.T01 MTR_1g052530 33.333 141 89 2 6 146 358 493 4.49e-14 68.6
MsG0280011105.01.T01 MTR_7g106710 29.787 141 92 2 6 146 441 574 1.13e-13 67.8
MsG0280011105.01.T01 MTR_4g107490 33.099 142 88 4 6 146 379 514 2.06e-13 67.0
MsG0280011105.01.T01 MTR_5g025690 33.594 128 71 3 17 144 83 196 2.26e-13 64.7
MsG0280011105.01.T01 MTR_5g027000 27.407 135 94 2 6 140 23 153 1.54e-12 62.0
MsG0280011105.01.T01 MTR_7g068710 30.822 146 88 4 5 146 361 497 4.00e-12 63.2
MsG0280011105.01.T01 MTR_3g055480 48.485 66 31 2 86 150 51 114 5.20e-12 59.3
MsG0280011105.01.T01 MTR_5g011850 30.714 140 91 3 4 143 11 144 5.58e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280011105.01.T01 AT2G43290 71.242 153 41 1 1 150 61 213 3.09e-75 223
MsG0280011105.01.T01 AT1G05990 75.497 151 36 1 1 151 1 150 5.08e-74 218
MsG0280011105.01.T01 AT3G07490 76.316 152 34 1 1 152 1 150 8.85e-71 210
MsG0280011105.01.T01 AT3G59440 69.333 150 43 1 3 152 49 195 1.33e-66 201
MsG0280011105.01.T01 AT4G03290 66.883 154 49 2 1 152 1 154 1.26e-64 194
MsG0280011105.01.T01 AT4G12860 63.816 152 53 1 1 152 1 150 1.15e-59 182
MsG0280011105.01.T01 AT1G18210 40.141 142 77 2 2 143 20 153 1.11e-31 111
MsG0280011105.01.T01 AT1G18210 40.141 142 77 2 2 143 20 153 1.11e-31 111
MsG0280011105.01.T01 AT1G24620 44.366 142 75 2 5 146 37 174 4.64e-30 108
MsG0280011105.01.T01 AT1G73630 39.716 141 77 2 5 145 20 152 2.88e-29 105
MsG0280011105.01.T01 AT5G37770 39.041 146 85 2 4 147 16 159 3.25e-29 105
MsG0280011105.01.T01 AT5G37770 39.041 146 85 2 4 147 16 159 3.25e-29 105
MsG0280011105.01.T01 AT5G37780 42.143 140 77 2 4 143 11 146 5.60e-28 101
MsG0280011105.01.T01 AT5G37780 43.478 69 37 1 75 143 7 73 4.65e-11 57.8
MsG0280011105.01.T01 AT1G66410 42.143 140 77 2 4 143 11 146 5.60e-28 101
MsG0280011105.01.T01 AT1G66410 43.478 69 37 1 75 143 7 73 4.65e-11 57.8
MsG0280011105.01.T01 AT1G66400 37.762 143 87 1 5 147 15 155 1.09e-27 101
MsG0280011105.01.T01 AT3G56800 42.143 140 77 2 4 143 11 146 1.20e-27 100
MsG0280011105.01.T01 AT2G27030 42.143 140 77 2 4 143 11 146 1.20e-27 100
MsG0280011105.01.T01 AT2G41110 42.143 140 77 2 4 143 11 146 1.20e-27 100
MsG0280011105.01.T01 AT3G43810 42.143 140 77 2 4 143 11 146 1.67e-27 100
MsG0280011105.01.T01 AT2G27030 42.143 140 77 2 4 143 11 146 3.73e-27 100
MsG0280011105.01.T01 AT5G21274 41.429 140 78 2 4 143 11 146 6.06e-27 99.0
MsG0280011105.01.T01 AT3G43810 42.143 140 77 2 4 143 11 146 9.49e-27 100
MsG0280011105.01.T01 AT4G20780 36.774 155 82 1 6 144 30 184 9.55e-25 94.4
MsG0280011105.01.T01 AT5G44460 40.000 150 76 4 6 144 29 175 1.43e-24 94.0
MsG0280011105.01.T01 AT2G41110 38.816 152 77 3 4 143 11 158 1.90e-24 92.8
MsG0280011105.01.T01 AT3G22930 39.860 143 82 2 5 147 35 173 2.30e-24 93.2
MsG0280011105.01.T01 AT4G14640 39.286 140 81 2 4 143 12 147 4.32e-24 91.7
MsG0280011105.01.T01 AT2G15680 38.571 140 80 2 4 143 49 182 7.51e-24 92.0
MsG0280011105.01.T01 AT5G37780 38.065 155 77 3 4 143 11 161 1.02e-23 91.3
MsG0280011105.01.T01 AT2G36180 39.568 139 81 2 6 143 1 137 1.25e-22 87.8
MsG0280011105.01.T01 AT3G03400 34.559 136 87 1 1 136 1 134 1.37e-22 87.4
MsG0280011105.01.T01 AT5G37780 42.400 125 68 2 19 143 13 133 1.54e-22 87.4
MsG0280011105.01.T01 AT5G17470 35.714 140 84 3 6 143 3 138 1.88e-22 87.4
MsG0280011105.01.T01 AT1G66410 42.400 125 68 2 19 143 36 156 1.99e-22 87.8
MsG0280011105.01.T01 AT2G41100 33.766 154 86 2 4 143 11 162 2.05e-22 91.3
MsG0280011105.01.T01 AT2G41100 35.404 161 79 4 4 145 100 254 4.36e-22 90.1
MsG0280011105.01.T01 AT2G41100 33.766 154 86 2 4 143 11 162 2.05e-22 91.3
MsG0280011105.01.T01 AT2G41100 35.404 161 79 4 4 145 100 254 4.36e-22 90.1
MsG0280011105.01.T01 AT1G32250 32.886 149 94 2 4 148 15 161 2.12e-22 87.8
MsG0280011105.01.T01 AT2G41100 35.404 161 79 4 4 145 65 219 2.66e-22 90.1
MsG0280011105.01.T01 AT2G41100 33.058 121 64 3 38 143 9 127 9.82e-14 67.0
MsG0280011105.01.T01 AT2G41100 35.404 161 79 4 4 145 65 219 2.66e-22 90.1
MsG0280011105.01.T01 AT2G41100 33.058 121 64 3 38 143 9 127 9.82e-14 67.0
MsG0280011105.01.T01 AT2G41100 35.404 161 79 4 4 145 65 219 2.66e-22 90.1
MsG0280011105.01.T01 AT2G41100 33.058 121 64 3 38 143 9 127 9.82e-14 67.0
MsG0280011105.01.T01 AT5G37780 42.400 125 68 2 19 143 52 172 2.75e-22 87.8
MsG0280011105.01.T01 AT3G10190 36.364 143 80 4 5 143 70 205 5.08e-22 87.8
MsG0280011105.01.T01 AT1G21550 36.842 152 78 5 3 143 8 152 3.43e-21 84.3
MsG0280011105.01.T01 AT5G42380 35.417 144 90 2 1 144 45 185 1.29e-20 83.6
MsG0280011105.01.T01 AT3G50770 34.932 146 82 4 5 143 64 203 3.25e-20 83.2
MsG0280011105.01.T01 AT1G76040 34.752 141 86 2 6 146 179 313 4.66e-20 84.7
MsG0280011105.01.T01 AT1G76040 34.752 141 86 2 6 146 179 313 4.66e-20 84.7
MsG0280011105.01.T01 AT1G66410 41.228 114 63 2 30 143 1 110 7.08e-20 79.7
MsG0280011105.01.T01 AT1G66410 41.228 114 63 2 30 143 1 110 7.08e-20 79.7
MsG0280011105.01.T01 AT1G76640 34.286 140 90 1 5 144 22 159 7.86e-20 80.9
MsG0280011105.01.T01 AT2G41090 33.571 140 86 2 4 143 11 143 8.71e-20 81.6
MsG0280011105.01.T01 AT1G76040 34.752 141 86 2 6 146 417 551 1.12e-19 84.7
MsG0280011105.01.T01 AT3G43810 41.228 114 63 2 30 143 1 110 1.97e-19 78.6
MsG0280011105.01.T01 AT3G43810 41.228 114 63 2 30 143 1 110 1.97e-19 78.6
MsG0280011105.01.T01 AT4G14640 39.200 125 72 2 19 143 9 129 2.38e-19 79.0
MsG0280011105.01.T01 AT1G76650 34.286 140 87 2 5 144 43 177 6.05e-19 79.0
MsG0280011105.01.T01 AT1G76650 34.286 140 87 2 5 144 43 177 6.05e-19 79.0
MsG0280011105.01.T01 AT3G20410 33.333 141 88 2 6 146 397 531 1.39e-18 81.6
MsG0280011105.01.T01 AT3G20410 33.333 141 88 2 6 146 397 531 1.39e-18 81.6
MsG0280011105.01.T01 AT1G50700 33.333 141 88 2 6 146 379 513 1.47e-18 81.6
MsG0280011105.01.T01 AT5G12180 33.333 141 88 2 6 146 379 513 1.96e-18 81.3
MsG0280011105.01.T01 AT2G41410 34.043 141 90 3 4 143 69 207 2.37e-18 78.6
MsG0280011105.01.T01 AT1G35670 32.624 141 88 3 6 146 332 465 3.74e-18 80.5
MsG0280011105.01.T01 AT3G51920 30.345 145 97 2 4 148 11 151 8.22e-18 75.5
MsG0280011105.01.T01 AT3G03000 33.333 144 93 2 5 148 20 160 9.00e-18 75.9
MsG0280011105.01.T01 AT3G03000 41.538 65 38 0 4 68 93 157 8.41e-11 57.4
MsG0280011105.01.T01 AT1G18530 32.867 143 88 3 5 144 7 144 1.28e-17 75.1
MsG0280011105.01.T01 AT4G09570 32.624 141 88 3 6 146 331 464 1.71e-17 78.6
MsG0280011105.01.T01 AT4G21940 33.333 141 88 2 6 146 407 541 1.79e-17 78.6
MsG0280011105.01.T01 AT4G21940 33.333 141 88 2 6 146 407 541 2.02e-17 78.6
MsG0280011105.01.T01 AT5G19360 33.333 141 88 2 6 146 374 508 4.19e-17 77.4
MsG0280011105.01.T01 AT5G12480 34.752 141 88 2 6 146 271 407 4.64e-17 77.4
MsG0280011105.01.T01 AT3G25600 32.168 143 89 3 5 144 12 149 5.79e-17 73.6
MsG0280011105.01.T01 AT5G12480 34.752 141 88 2 6 146 365 501 6.91e-17 77.0
MsG0280011105.01.T01 AT3G57530 35.036 137 83 2 10 146 373 503 8.16e-17 76.6
MsG0280011105.01.T01 AT2G41860 33.803 142 87 3 6 146 360 495 1.04e-16 76.3
MsG0280011105.01.T01 AT2G41860 33.803 142 87 3 6 146 360 495 1.05e-16 76.3
MsG0280011105.01.T01 AT2G31500 34.667 150 88 5 3 146 365 510 1.07e-16 76.3
MsG0280011105.01.T01 AT3G50360 30.556 144 96 2 5 148 27 166 1.15e-16 72.8
MsG0280011105.01.T01 AT4G35310 34.043 141 86 3 6 146 403 536 2.24e-16 75.5
MsG0280011105.01.T01 AT4G35310 34.043 141 86 3 6 146 403 536 2.24e-16 75.5
MsG0280011105.01.T01 AT3G10660 31.469 143 91 2 6 148 492 627 2.42e-16 75.5
MsG0280011105.01.T01 AT3G10660 31.469 143 91 2 6 148 492 627 2.42e-16 75.5
MsG0280011105.01.T01 AT2G38910 32.867 143 89 3 6 148 440 575 2.62e-16 75.1
MsG0280011105.01.T01 AT5G04870 31.250 144 92 2 6 149 456 592 2.97e-16 75.1
MsG0280011105.01.T01 AT1G74740 33.803 142 87 3 6 146 365 500 3.22e-16 75.1
MsG0280011105.01.T01 AT4G38230 32.624 141 88 2 6 146 186 319 3.81e-16 74.3
MsG0280011105.01.T01 AT4G23650 31.915 141 90 2 6 146 384 518 4.85e-16 74.3
MsG0280011105.01.T01 AT5G23580 31.655 139 88 2 6 144 328 459 5.17e-16 74.3
MsG0280011105.01.T01 AT2G17290 33.333 141 87 3 6 146 391 524 5.59e-16 74.3
MsG0280011105.01.T01 AT2G17290 33.333 141 87 3 6 146 391 524 5.59e-16 74.3
MsG0280011105.01.T01 AT4G37010 29.167 144 98 2 5 148 27 166 5.61e-16 71.2
MsG0280011105.01.T01 AT4G37010 29.167 144 98 2 5 148 31 170 6.42e-16 71.2
MsG0280011105.01.T01 AT1G76650 33.571 140 78 4 5 144 43 167 7.24e-16 70.9
MsG0280011105.01.T01 AT4G38230 32.624 141 88 2 6 146 360 493 8.11e-16 73.9
MsG0280011105.01.T01 AT4G38230 32.624 141 88 2 6 146 330 463 8.42e-16 73.6
MsG0280011105.01.T01 AT4G38230 32.624 141 88 2 6 146 330 463 8.42e-16 73.6
MsG0280011105.01.T01 AT4G04720 31.915 141 90 2 6 146 385 519 1.49e-15 73.2
MsG0280011105.01.T01 AT4G04720 31.915 141 90 2 6 146 385 519 1.49e-15 73.2
MsG0280011105.01.T01 AT1G61950 33.571 140 87 2 6 145 405 538 5.91e-15 71.2
MsG0280011105.01.T01 AT4G04740 30.496 141 92 2 6 146 374 508 5.94e-15 71.2
MsG0280011105.01.T01 AT4G04740 30.496 141 92 2 6 146 374 508 5.94e-15 71.2
MsG0280011105.01.T01 AT4G04740 30.496 141 92 2 6 146 374 508 5.94e-15 71.2
MsG0280011105.01.T01 AT4G04740 30.496 141 92 2 6 146 374 508 5.94e-15 71.2
MsG0280011105.01.T01 AT4G04740 30.496 141 92 2 6 146 374 508 5.94e-15 71.2
MsG0280011105.01.T01 AT4G04740 30.496 141 92 2 6 146 374 508 5.94e-15 71.2
MsG0280011105.01.T01 AT4G04695 31.206 141 91 2 6 146 337 471 6.67e-15 71.2
MsG0280011105.01.T01 AT1G18890 33.099 142 88 3 6 146 369 504 2.41e-14 69.7
MsG0280011105.01.T01 AT1G50700 28.144 167 88 3 6 146 379 539 5.07e-14 68.6
MsG0280011105.01.T01 AT2G41100 33.871 124 57 4 41 145 12 129 6.61e-14 66.2
MsG0280011105.01.T01 AT4G14640 37.374 99 60 1 4 102 12 108 8.87e-14 64.3
MsG0280011105.01.T01 AT3G29000 30.709 127 72 1 22 148 84 194 2.34e-13 64.7
MsG0280011105.01.T01 AT4G04710 30.496 141 92 2 6 146 338 472 2.85e-13 66.6
MsG0280011105.01.T01 AT4G04710 30.496 141 92 2 6 146 324 458 2.85e-13 66.2
MsG0280011105.01.T01 AT4G04700 30.216 139 91 2 6 144 337 469 2.93e-13 66.2
MsG0280011105.01.T01 AT4G04710 30.496 141 92 2 6 146 351 485 3.31e-13 66.2
MsG0280011105.01.T01 AT5G19450 32.394 142 90 3 6 146 363 499 6.48e-13 65.5
MsG0280011105.01.T01 AT5G19450 32.394 142 90 3 6 146 363 499 6.48e-13 65.5
MsG0280011105.01.T01 AT5G39670 42.105 76 44 0 68 143 124 199 1.15e-12 63.2
MsG0280011105.01.T01 AT3G22930 36.735 98 60 1 5 102 35 130 1.56e-12 61.2
MsG0280011105.01.T01 AT3G03410 28.777 139 86 2 7 145 4 129 3.60e-12 60.5
MsG0280011105.01.T01 AT4G04710 30.070 143 92 3 6 146 351 487 5.79e-12 62.8
MsG0280011105.01.T01 AT2G17890 29.167 144 90 5 5 144 415 550 7.01e-12 62.4
MsG0280011105.01.T01 AT2G41100 45.312 64 33 1 82 145 14 75 8.21e-12 59.7
MsG0280011105.01.T01 AT1G62820 30.000 140 92 3 4 143 12 145 2.31e-11 58.5
MsG0280011105.01.T01 AT1G12310 29.286 140 93 3 4 143 12 145 6.12e-11 57.4
MsG0280011105.01.T01 AT3G51850 28.873 142 96 2 5 146 359 495 6.13e-11 59.7

Find 33 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGATTCCTTGGAGAATTT+AGG 0.247504 2:-79638787 MsG0280011105.01.T01:CDS
TCAACTCTTTCTTTGTTATA+CGG 0.252007 2:+79638809 None:intergenic
AAATGGTTTGGTTGATTATA+AGG 0.252764 2:-79638476 MsG0280011105.01.T01:CDS
CGTCGTTGCGGTCAAACATT+TGG 0.299949 2:+79638836 None:intergenic
TGATGAGTTGAGATCGGTTT+TGG 0.312846 2:-79638572 MsG0280011105.01.T01:CDS
AAAACACGTTTGAGTTCATT+TGG 0.342285 2:+79638859 None:intergenic
GAAGACTGTAAGAAGATGAT+AGG 0.350621 2:-79638517 MsG0280011105.01.T01:CDS
ATTTGACTCAGCTCTTTGTC+AGG 0.382764 2:+79638754 None:intergenic
GAAAGAGTTGAATGATTCCT+TGG 0.417781 2:-79638797 MsG0280011105.01.T01:CDS
AAGAGGAGGAAGAAGATATG+AGG 0.424538 2:-79638642 MsG0280011105.01.T01:CDS
GGAGTTTAAGCAAATGATGA+AGG 0.441958 2:-79638455 MsG0280011105.01.T01:CDS
ATAGGGACTGTTGATGTTGA+TGG 0.445399 2:-79638499 MsG0280011105.01.T01:CDS
TGATGTTGATGGAAATGGTT+TGG 0.447188 2:-79638488 MsG0280011105.01.T01:CDS
ACTGTTGATGTTGATGGAAA+TGG 0.457780 2:-79638493 MsG0280011105.01.T01:CDS
AGAGGAGGAAGAAGATATGA+GGG 0.472178 2:-79638641 MsG0280011105.01.T01:CDS
GTGTTTGATCAGAACGGTGA+TGG 0.513651 2:-79638607 MsG0280011105.01.T01:CDS
GAGTGAACGTGATGAAGAGG+AGG 0.519722 2:-79638656 MsG0280011105.01.T01:CDS
AAGCAAATGATGAAGGGTGG+TGG 0.523305 2:-79638448 MsG0280011105.01.T01:CDS
TTTGACTCAGCTCTTTGTCA+GGG 0.541354 2:+79638755 None:intergenic
TAGCGTTGATGAGTTGAGAT+CGG 0.560869 2:-79638578 MsG0280011105.01.T01:CDS
AAGACTGTAAGAAGATGATA+GGG 0.560997 2:-79638516 MsG0280011105.01.T01:CDS
CAATATCCACACATCCATCT+CGG 0.578574 2:+79638710 None:intergenic
TATGAGTGAACGTGATGAAG+AGG 0.579424 2:-79638659 MsG0280011105.01.T01:CDS
AAGATTGATGTGAACCGAGA+TGG 0.581296 2:-79638724 MsG0280011105.01.T01:CDS
AGATGGATGTGTGGATATTG+AGG 0.593221 2:-79638707 MsG0280011105.01.T01:CDS
TTATACGGCCATCGTCGTTG+CGG 0.593300 2:+79638824 None:intergenic
ATGTTTGACCGCAACGACGA+TGG 0.596739 2:-79638832 MsG0280011105.01.T01:CDS
GAAGATTCCTAAATTCTCCA+AGG 0.608715 2:+79638780 None:intergenic
GTTTCGTTGGGATTGAAACA+AGG 0.613024 2:-79638550 MsG0280011105.01.T01:CDS
GAGTTTAAGCAAATGATGAA+GGG 0.617670 2:-79638454 MsG0280011105.01.T01:CDS
TTTAAGCAAATGATGAAGGG+TGG 0.643324 2:-79638451 MsG0280011105.01.T01:CDS
TTCAACGTGTTTGATCAGAA+CGG 0.663829 2:-79638613 MsG0280011105.01.T01:CDS
TGTGAACCGAGATGGATGTG+TGG 0.734567 2:-79638716 MsG0280011105.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACTCTTTCTTTGTTATA+CGG + Chr2:79638488-79638507 None:intergenic 25.0%
!!! AAATGGTTTGGTTGATTATA+AGG - Chr2:79638818-79638837 MsG0280011105.01.T01:CDS 25.0%
AAGACTGTAAGAAGATGATA+GGG - Chr2:79638778-79638797 MsG0280011105.01.T01:CDS 30.0%
AATGATTCCTTGGAGAATTT+AGG - Chr2:79638507-79638526 MsG0280011105.01.T01:CDS 30.0%
GAGTTTAAGCAAATGATGAA+GGG - Chr2:79638840-79638859 MsG0280011105.01.T01:CDS 30.0%
! AAAACACGTTTGAGTTCATT+TGG + Chr2:79638438-79638457 None:intergenic 30.0%
GAAAGAGTTGAATGATTCCT+TGG - Chr2:79638497-79638516 MsG0280011105.01.T01:CDS 35.0%
GAAGACTGTAAGAAGATGAT+AGG - Chr2:79638777-79638796 MsG0280011105.01.T01:CDS 35.0%
GAAGATTCCTAAATTCTCCA+AGG + Chr2:79638517-79638536 None:intergenic 35.0%
GGAGTTTAAGCAAATGATGA+AGG - Chr2:79638839-79638858 MsG0280011105.01.T01:CDS 35.0%
TTCAACGTGTTTGATCAGAA+CGG - Chr2:79638681-79638700 MsG0280011105.01.T01:CDS 35.0%
TTTAAGCAAATGATGAAGGG+TGG - Chr2:79638843-79638862 MsG0280011105.01.T01:CDS 35.0%
! ACTGTTGATGTTGATGGAAA+TGG - Chr2:79638801-79638820 MsG0280011105.01.T01:CDS 35.0%
! TGATGTTGATGGAAATGGTT+TGG - Chr2:79638806-79638825 MsG0280011105.01.T01:CDS 35.0%
AAGAGGAGGAAGAAGATATG+AGG - Chr2:79638652-79638671 MsG0280011105.01.T01:CDS 40.0%
AAGATTGATGTGAACCGAGA+TGG - Chr2:79638570-79638589 MsG0280011105.01.T01:CDS 40.0%
AGAGGAGGAAGAAGATATGA+GGG - Chr2:79638653-79638672 MsG0280011105.01.T01:CDS 40.0%
AGATGGATGTGTGGATATTG+AGG - Chr2:79638587-79638606 MsG0280011105.01.T01:CDS 40.0%
ATAGGGACTGTTGATGTTGA+TGG - Chr2:79638795-79638814 MsG0280011105.01.T01:CDS 40.0%
ATTTGACTCAGCTCTTTGTC+AGG + Chr2:79638543-79638562 None:intergenic 40.0%
CAATATCCACACATCCATCT+CGG + Chr2:79638587-79638606 None:intergenic 40.0%
GTTTCGTTGGGATTGAAACA+AGG - Chr2:79638744-79638763 MsG0280011105.01.T01:CDS 40.0%
TATGAGTGAACGTGATGAAG+AGG - Chr2:79638635-79638654 MsG0280011105.01.T01:CDS 40.0%
TTTGACTCAGCTCTTTGTCA+GGG + Chr2:79638542-79638561 None:intergenic 40.0%
!! TAGCGTTGATGAGTTGAGAT+CGG - Chr2:79638716-79638735 MsG0280011105.01.T01:CDS 40.0%
!! TGATGAGTTGAGATCGGTTT+TGG - Chr2:79638722-79638741 MsG0280011105.01.T01:CDS 40.0%
!!! AGATCGGTTTTGGTTTCGTT+GGG - Chr2:79638732-79638751 MsG0280011105.01.T01:CDS 40.0%
AAGCAAATGATGAAGGGTGG+TGG - Chr2:79638846-79638865 MsG0280011105.01.T01:CDS 45.0%
GTGTTTGATCAGAACGGTGA+TGG - Chr2:79638687-79638706 MsG0280011105.01.T01:CDS 45.0%
!!! GAGATCGGTTTTGGTTTCGT+TGG - Chr2:79638731-79638750 MsG0280011105.01.T01:CDS 45.0%
ATGTTTGACCGCAACGACGA+TGG - Chr2:79638462-79638481 MsG0280011105.01.T01:CDS 50.0%
CGTCGTTGCGGTCAAACATT+TGG + Chr2:79638461-79638480 None:intergenic 50.0%
GAGTGAACGTGATGAAGAGG+AGG - Chr2:79638638-79638657 MsG0280011105.01.T01:CDS 50.0%
TGTGAACCGAGATGGATGTG+TGG - Chr2:79638578-79638597 MsG0280011105.01.T01:CDS 50.0%
TTATACGGCCATCGTCGTTG+CGG + Chr2:79638473-79638492 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
Chr2 gene 79638429 79638887 79638429 ID=MsG0280011105.01;Name=MsG0280011105.01
Chr2 mRNA 79638429 79638887 79638429 ID=MsG0280011105.01.T01;Parent=MsG0280011105.01;Name=MsG0280011105.01.T01;_AED=0.49;_eAED=0.49;_QI=0|-1|0|1|-1|1|1|0|152
Chr2 exon 79638429 79638887 79638429 ID=MsG0280011105.01.T01:exon:38056;Parent=MsG0280011105.01.T01
Chr2 CDS 79638429 79638887 79638429 ID=MsG0280011105.01.T01:cds;Parent=MsG0280011105.01.T01
Gene Sequence

>MsG0280011105.01.T01

ATGGATCCAAATGAACTCAAACGTGTTTTCCAAATGTTTGACCGCAACGACGATGGCCGTATAACAAAGAAAGAGTTGAATGATTCCTTGGAGAATTTAGGAATCTTCATCCCTGACAAAGAGCTGAGTCAAATGATCGAGAAGATTGATGTGAACCGAGATGGATGTGTGGATATTGAGGAATTTAGAGAGTTGTATGAGTCAATTATGAGTGAACGTGATGAAGAGGAGGAAGAAGATATGAGGGAAGCATTCAACGTGTTTGATCAGAACGGTGATGGATTCATTAGCGTTGATGAGTTGAGATCGGTTTTGGTTTCGTTGGGATTGAAACAAGGAAGAACAGTTGAAGACTGTAAGAAGATGATAGGGACTGTTGATGTTGATGGAAATGGTTTGGTTGATTATAAGGAGTTTAAGCAAATGATGAAGGGTGGTGGATTCACTGCTCTCAGTTAG

Protein sequence

>MsG0280011105.01.T01

MDPNELKRVFQMFDRNDDGRITKKELNDSLENLGIFIPDKELSQMIEKIDVNRDGCVDIEEFRELYESIMSERDEEEEEDMREAFNVFDQNGDGFISVDELRSVLVSLGLKQGRTVEDCKKMIGTVDVDGNGLVDYKEFKQMMKGGGFTALS*