AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025327.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025327.01.T01 MTR_5g026530 58.621 116 0 1 1 116 1 68 1.54e-36 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 26 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATAGCTGGTGGCCGTTCT+AGG 0.204038 5:+16974668 MsG0580025327.01.T01:CDS
AGGTTTCTCCTTCGGATGTT+TGG 0.343760 5:-16974915 None:intergenic
TAATGATCAGCAAGTTGGTT+TGG 0.366728 5:-16974887 None:intergenic
GGAAAAGAAAACCTTGCAAA+TGG 0.395436 5:-16971923 None:intergenic
TCTGCTGGAGGTTTCTCCTT+CGG 0.427085 5:-16974923 None:intergenic
GAAAAGAAAACCTTGCAAAT+GGG 0.438063 5:-16971922 None:intergenic
GATCACTAGCTTGACTCTGC+TGG 0.473222 5:-16974938 None:intergenic
TTCAAAGAATCATGTATAGC+TGG 0.474651 5:+16974655 MsG0580025327.01.T01:CDS
GAGAAGAATCAGAAATCAAA+GGG 0.476506 5:+16971856 MsG0580025327.01.T01:CDS
TTTCTCCTTCGGATGTTTGG+AGG 0.480086 5:-16974912 None:intergenic
CAGATTGAAGCTAGAGGTGC+TGG 0.487362 5:+16971883 MsG0580025327.01.T01:CDS
TATAGCTGGTGGCCGTTCTA+GGG 0.492144 5:+16974669 MsG0580025327.01.T01:CDS
GTTGGTTTGGATTTGCAAGT+TGG 0.501756 5:-16974874 None:intergenic
CATGATAGAAGAAGATGAGA+AGG 0.502051 5:-16971944 None:intergenic
AATCACTTGCCCCATTTGCA+AGG 0.541181 5:+16971912 MsG0580025327.01.T01:CDS
AGAGAAGAATCAGAAATCAA+AGG 0.544370 5:+16971855 MsG0580025327.01.T01:CDS
AGGCATAATGATCAGCAAGT+TGG 0.549460 5:-16974892 None:intergenic
CACTAGCTTGACTCTGCTGG+AGG 0.559503 5:-16974935 None:intergenic
AAAAGAAAACCTTGCAAATG+GGG 0.561030 5:-16971921 None:intergenic
ACCATAGTGTCACCCTAGAA+CGG 0.614680 5:-16974681 None:intergenic
TCACAAACACAAGATGACGC+GGG 0.643764 5:+16971798 None:intergenic
AAAGAATCATGTATAGCTGG+TGG 0.657429 5:+16974658 MsG0580025327.01.T01:CDS
CACAAACACAAGATGACGCG+GGG 0.663584 5:+16971799 None:intergenic
TTATGCCTCCAAACATCCGA+AGG 0.664972 5:+16974907 MsG0580025327.01.T01:CDS
ATCACAAACACAAGATGACG+CGG 0.667818 5:+16971797 None:intergenic
GGTTCTCAGATTGAAGCTAG+AGG 0.681237 5:+16971877 MsG0580025327.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTCAAAAAGTAATTAT+GGG - Chr5:16972562-16972581 None:intergenic 10.0%
!!! TTTTTGAATAATGTATTTAA+AGG + Chr5:16972570-16972589 MsG0580025327.01.T01:intron 10.0%
!! AAAGTAAATTATTTCATAGA+AGG - Chr5:16974507-16974526 None:intergenic 15.0%
!! CATTATTCAAAAAGTAATTA+TGG - Chr5:16972563-16972582 None:intergenic 15.0%
!! TGGATATATATTATAATTTG+AGG + Chr5:16972174-16972193 MsG0580025327.01.T01:intron 15.0%
!!! AATTTAAAATCAAATCATCA+TGG - Chr5:16972318-16972337 None:intergenic 15.0%
!!! TATAAGTTATTTCTATAGAA+TGG + Chr5:16973622-16973641 MsG0580025327.01.T01:intron 15.0%
!!! TTTTTTTTCCATTTTGAAAT+TGG + Chr5:16972008-16972027 MsG0580025327.01.T01:intron 15.0%
!! AAAACTAATAGTCAATTTAC+GGG - Chr5:16973125-16973144 None:intergenic 20.0%
!! AAATTTAAGCACAACTTAAA+TGG + Chr5:16972333-16972352 MsG0580025327.01.T01:intron 20.0%
!! AATTTAAGCACAACTTAAAT+GGG + Chr5:16972334-16972353 MsG0580025327.01.T01:intron 20.0%
!! ACTTATCATTCTTAAATTGA+TGG + Chr5:16974542-16974561 MsG0580025327.01.T01:intron 20.0%
!! AGAAAAAAGTCTAAATTGAA+TGG - Chr5:16974724-16974743 None:intergenic 20.0%
!! ATATAACACCAATTTCAAAA+TGG - Chr5:16972019-16972038 None:intergenic 20.0%
!! ATGAATATTTCATCATAAGA+AGG - Chr5:16974462-16974481 None:intergenic 20.0%
!! ATTTAAGAATGATAAGTAAC+TGG - Chr5:16974539-16974558 None:intergenic 20.0%
!! CAAAACTAATAGTCAATTTA+CGG - Chr5:16973126-16973145 None:intergenic 20.0%
!! CCTTAGATAACTTATAAAAA+CGG - Chr5:16973684-16973703 None:intergenic 20.0%
!! CTTATCATTCTTAAATTGAT+GGG + Chr5:16974543-16974562 MsG0580025327.01.T01:intron 20.0%
!! TATAGAAGTCAATTGTAAAT+TGG - Chr5:16974618-16974637 None:intergenic 20.0%
!! TATATTGTGAACAAGTAATT+AGG + Chr5:16973992-16974011 MsG0580025327.01.T01:intron 20.0%
!!! ATATTTAAAGACCTAGTTTT+TGG + Chr5:16973942-16973961 MsG0580025327.01.T01:intron 20.0%
!!! ATTCAATTTAGACTTTTTTC+TGG + Chr5:16974723-16974742 MsG0580025327.01.T01:intron 20.0%
!!! CTTTTGAAACTTCTTTTTAT+TGG + Chr5:16973202-16973221 MsG0580025327.01.T01:intron 20.0%
! CACAATAAATGAAGACAAAA+AGG - Chr5:16972677-16972696 None:intergenic 25.0%
! GATTATAATTAATGCTGTTC+AGG + Chr5:16974136-16974155 MsG0580025327.01.T01:intron 25.0%
! GGTCTTTAAATATAAAGACT+AGG - Chr5:16973935-16973954 None:intergenic 25.0%
! TAAGTTATCTAAGGAATTTG+TGG + Chr5:16973690-16973709 MsG0580025327.01.T01:intron 25.0%
! TCAAGTAAATACCAAAAACT+AGG - Chr5:16973956-16973975 None:intergenic 25.0%
! TCATTGAATGAGTTATCATA+CGG + Chr5:16972130-16972149 MsG0580025327.01.T01:intron 25.0%
! TGCTAAAATACTAATTGGTT+AGG + Chr5:16972381-16972400 MsG0580025327.01.T01:intron 25.0%
! TGTATATTTCTTTAGCAAAG+AGG + Chr5:16974015-16974034 MsG0580025327.01.T01:intron 25.0%
! TTTATGAGTTTCTTCTTCTA+GGG - Chr5:16973538-16973557 None:intergenic 25.0%
!! AATTTTCATTCACATGACTT+TGG - Chr5:16972840-16972859 None:intergenic 25.0%
!! AGTGTTGCTAAAATACTAAT+TGG + Chr5:16972376-16972395 MsG0580025327.01.T01:intron 25.0%
!! TTTTATAAACGGTTTCTTTC+TGG + Chr5:16972788-16972807 MsG0580025327.01.T01:intron 25.0%
!! TTTTATGAGTTTCTTCTTCT+AGG - Chr5:16973539-16973558 None:intergenic 25.0%
!!! CCGTTTTTATAAGTTATCTA+AGG + Chr5:16973681-16973700 MsG0580025327.01.T01:intron 25.0%
!!! CGTAAATTGACTATTAGTTT+TGG + Chr5:16973124-16973143 MsG0580025327.01.T01:intron 25.0%
!!! GTTTTGGAAAAAGTAATTAG+TGG + Chr5:16973140-16973159 MsG0580025327.01.T01:intron 25.0%
!!! TGAATCTAGGACATTTTATA+GGG + Chr5:16974189-16974208 MsG0580025327.01.T01:intron 25.0%
!!! TTGAATCTAGGACATTTTAT+AGG + Chr5:16974188-16974207 MsG0580025327.01.T01:intron 25.0%
AAAAGAAAACCTTGCAAATG+GGG - Chr5:16971924-16971943 None:intergenic 30.0%
AAGACAGTAATGTTAGAGTT+TGG - Chr5:16973080-16973099 None:intergenic 30.0%
ACAATGTTTACAAGCATAAG+AGG - Chr5:16974290-16974309 None:intergenic 30.0%
ACTATGGTTAACTAGGTTAA+TGG + Chr5:16974696-16974715 MsG0580025327.01.T01:intron 30.0%
AGAGAAGAATCAGAAATCAA+AGG + Chr5:16971855-16971874 MsG0580025327.01.T01:CDS 30.0%
CTAAAGTACAAACCATTAGT+TGG - Chr5:16972531-16972550 None:intergenic 30.0%
CTATGGTTAACTAGGTTAAT+GGG + Chr5:16974697-16974716 MsG0580025327.01.T01:intron 30.0%
GAAAAGAAAACCTTGCAAAT+GGG - Chr5:16971925-16971944 None:intergenic 30.0%
GAGAAGAATCAGAAATCAAA+GGG + Chr5:16971856-16971875 MsG0580025327.01.T01:CDS 30.0%
TAAGAGCTTCTTAGATATGT+GGG + Chr5:16973438-16973457 MsG0580025327.01.T01:intron 30.0%
TAAGCAATCAGTGCAAATAA+AGG - Chr5:16973051-16973070 None:intergenic 30.0%
TATGGTTAACTAGGTTAATG+GGG + Chr5:16974698-16974717 MsG0580025327.01.T01:intron 30.0%
TCAAAAGTAATTGTAGCTAC+TGG - Chr5:16973189-16973208 None:intergenic 30.0%
TGTTATTGAACATGTGTTTG+TGG + Chr5:16974757-16974776 MsG0580025327.01.T01:intron 30.0%
TTCAAAGAATCATGTATAGC+TGG + Chr5:16974655-16974674 MsG0580025327.01.T01:CDS 30.0%
TTGCTATATTAGCAGGAATT+AGG + Chr5:16974074-16974093 MsG0580025327.01.T01:intron 30.0%
! AGGAAGGATCAAATCATTTT+CGG + Chr5:16973785-16973804 MsG0580025327.01.T01:intron 30.0%
! ATTATGTTGTTTGTCTAACC+AGG - Chr5:16973577-16973596 None:intergenic 30.0%
! TGTTGATAGGAGAATTCATT+GGG + Chr5:16973023-16973042 MsG0580025327.01.T01:intron 30.0%
! TGTTGCATTTTGCTCATATT+TGG + Chr5:16972488-16972507 MsG0580025327.01.T01:intron 30.0%
! TTCCTTTTCATGGAAGAATA+AGG - Chr5:16974395-16974414 None:intergenic 30.0%
! TTTAACCTGAAATCTGAAGT+GGG - Chr5:16974344-16974363 None:intergenic 30.0%
! TTTTAACCTGAAATCTGAAG+TGG - Chr5:16974345-16974364 None:intergenic 30.0%
!! AGAAAGTATTTGCAGTGTTA+AGG + Chr5:16973000-16973019 MsG0580025327.01.T01:intron 30.0%
!! AGAACTTTTGAGTATCTATC+AGG + Chr5:16974815-16974834 MsG0580025327.01.T01:CDS 30.0%
!! GTTGTTTCACATTCTTTTTC+AGG + Chr5:16974850-16974869 MsG0580025327.01.T01:CDS 30.0%
!! TTCAAACTTGCTATATTAGC+AGG + Chr5:16974067-16974086 MsG0580025327.01.T01:intron 30.0%
!! TTTTGTTGTGCTTGATGAAA+GGG - Chr5:16973910-16973929 None:intergenic 30.0%
!!! GGGAATAAAGTTTTCAAGTT+TGG - Chr5:16974324-16974343 None:intergenic 30.0%
AAAGAATCATGTATAGCTGG+TGG + Chr5:16974658-16974677 MsG0580025327.01.T01:CDS 35.0%
AACTCACTACACTACGAAAA+AGG - Chr5:16973289-16973308 None:intergenic 35.0%
AATAAGGCTAAGGTGGTATT+TGG - Chr5:16974379-16974398 None:intergenic 35.0%
ATATATATCCATGTCGTGTC+TGG - Chr5:16972165-16972184 None:intergenic 35.0%
ATGTTCTATTTCCTAGAGAC+AGG - Chr5:16973477-16973496 None:intergenic 35.0%
ATTAGCAGGAATTAGGTGTA+AGG + Chr5:16974081-16974100 MsG0580025327.01.T01:intron 35.0%
ATTCACATGACTTTGGATTG+CGG - Chr5:16972833-16972852 None:intergenic 35.0%
CATGATAGAAGAAGATGAGA+AGG - Chr5:16971947-16971966 None:intergenic 35.0%
CTAAGAGCTTCTTAGATATG+TGG + Chr5:16973437-16973456 MsG0580025327.01.T01:intron 35.0%
CTAAGGTGGTATTTGGTATT+AGG - Chr5:16974372-16974391 None:intergenic 35.0%
GATTGGAATTGGATTAACTG+TGG + Chr5:16972883-16972902 MsG0580025327.01.T01:intron 35.0%
GCAAGTTTGAACTTATACAG+AGG - Chr5:16974058-16974077 None:intergenic 35.0%
GGAAAAGAAAACCTTGCAAA+TGG - Chr5:16971926-16971945 None:intergenic 35.0%
TAATTATGTGCCAATGCACT+TGG - Chr5:16973166-16973185 None:intergenic 35.0%
TATAGCATAGTTTCCCTTCA+TGG - Chr5:16973743-16973762 None:intergenic 35.0%
TCAGGTGCCTATAATTAACT+GGG + Chr5:16974154-16974173 MsG0580025327.01.T01:intron 35.0%
TGAGCAAAATGCAACAAAAC+AGG - Chr5:16972484-16972503 None:intergenic 35.0%
TGGTATTTACTTGATCGACT+AGG + Chr5:16973962-16973981 MsG0580025327.01.T01:intron 35.0%
TGTGAAACATGACTGTGTAA+TGG + Chr5:16974240-16974259 MsG0580025327.01.T01:intron 35.0%
TGTTTGTCTAACCAGGTATA+TGG - Chr5:16973570-16973589 None:intergenic 35.0%
TTAAGCACAACTTAAATGGG+TGG + Chr5:16972337-16972356 MsG0580025327.01.T01:intron 35.0%
TTATTCCCACTTCAGATTTC+AGG + Chr5:16974336-16974355 MsG0580025327.01.T01:intron 35.0%
TTCAGGTGCCTATAATTAAC+TGG + Chr5:16974153-16974172 MsG0580025327.01.T01:intron 35.0%
TTCATGGAAGAATAAGGCTA+AGG - Chr5:16974389-16974408 None:intergenic 35.0%
TTCTTCCATGAAAAGGAACT+AGG + Chr5:16974397-16974416 MsG0580025327.01.T01:intron 35.0%
! GGTGTTATATGAGTGTTGTT+GGG + Chr5:16972029-16972048 MsG0580025327.01.T01:intron 35.0%
! GTATTTTGCAACCTTTGCTA+GGG + Chr5:16972861-16972880 MsG0580025327.01.T01:intron 35.0%
! GTGTTGATAGGAGAATTCAT+TGG + Chr5:16973022-16973041 MsG0580025327.01.T01:intron 35.0%
! TCCTAATACTCTGACCATTT+TGG + Chr5:16973877-16973896 MsG0580025327.01.T01:intron 35.0%
! TCTTACCTAGTTCCTTTTCA+TGG - Chr5:16974405-16974424 None:intergenic 35.0%
! TGTATTTTGCAACCTTTGCT+AGG + Chr5:16972860-16972879 MsG0580025327.01.T01:intron 35.0%
!! AAAGCATGTTCTTTGAAACC+AGG - Chr5:16973401-16973420 None:intergenic 35.0%
!! AGCCTTATTCTTCCATGAAA+AGG + Chr5:16974390-16974409 MsG0580025327.01.T01:intron 35.0%
!! CTTTTGTTGTGCTTGATGAA+AGG - Chr5:16973911-16973930 None:intergenic 35.0%
!! GATTCAAGCTTCACTTTTGT+TGG - Chr5:16973253-16973272 None:intergenic 35.0%
!! GTTTCTTTCTGGTTTCCTAT+CGG + Chr5:16972799-16972818 MsG0580025327.01.T01:intron 35.0%
!! TAATGATCAGCAAGTTGGTT+TGG - Chr5:16974890-16974909 None:intergenic 35.0%
!! TGGTGTTATATGAGTGTTGT+TGG + Chr5:16972028-16972047 MsG0580025327.01.T01:intron 35.0%
AAATCTCCTCTCCATATACC+TGG + Chr5:16973556-16973575 MsG0580025327.01.T01:intron 40.0%
AAGCTGAAAACAGACACAAG+AGG + Chr5:16973717-16973736 MsG0580025327.01.T01:intron 40.0%
AGCTTCTTAGATATGTGGGT+TGG + Chr5:16973442-16973461 MsG0580025327.01.T01:intron 40.0%
AGGCATAATGATCAGCAAGT+TGG - Chr5:16974895-16974914 None:intergenic 40.0%
AGGTGCCTATAATTAACTGG+GGG + Chr5:16974156-16974175 MsG0580025327.01.T01:intron 40.0%
ATGGAAGAATAAGGCTAAGG+TGG - Chr5:16974386-16974405 None:intergenic 40.0%
ATTACTGTCTTCACAGAGAG+AGG + Chr5:16973089-16973108 MsG0580025327.01.T01:intron 40.0%
CAGGTGCCTATAATTAACTG+GGG + Chr5:16974155-16974174 MsG0580025327.01.T01:intron 40.0%
GTCATATTTGTGTCTGACAC+TGG + Chr5:16972239-16972258 MsG0580025327.01.T01:intron 40.0%
TAATTAGTGGCCAAGTGCAT+TGG + Chr5:16973153-16973172 MsG0580025327.01.T01:intron 40.0%
TATAAAGTCCCTGCCATGTT+GGG + Chr5:16973759-16973778 MsG0580025327.01.T01:intron 40.0%
TCTTCTTGCTTTGCATTAGC+AGG + Chr5:16973824-16973843 MsG0580025327.01.T01:intron 40.0%
TCTTGCCCCCAGTTAATTAT+AGG - Chr5:16974164-16974183 None:intergenic 40.0%
TGTGTCAGTTTGCCAACTAA+TGG + Chr5:16972516-16972535 MsG0580025327.01.T01:intron 40.0%
! ATCATCATGGACTGAAACCT+CGG - Chr5:16972305-16972324 None:intergenic 40.0%
! GCCAAAATGGTCAGAGTATT+AGG - Chr5:16973881-16973900 None:intergenic 40.0%
! TCAGAGTATTAGGATGACAC+AGG - Chr5:16973871-16973890 None:intergenic 40.0%
!! ATTGCATCGATTAACCGATC+TGG + Chr5:16972059-16972078 MsG0580025327.01.T01:intron 40.0%
!! GTTGGTTTGGATTTGCAAGT+TGG - Chr5:16974877-16974896 None:intergenic 40.0%
!! TGCAGTGTTAAGGTGTTGAT+AGG + Chr5:16973010-16973029 MsG0580025327.01.T01:intron 40.0%
!! TTGCATCGATTAACCGATCT+GGG + Chr5:16972060-16972079 MsG0580025327.01.T01:intron 40.0%
AAGTGATGCTGAGAGATACC+TGG + Chr5:16973380-16973399 MsG0580025327.01.T01:intron 45.0%
AATCACTTGCCCCATTTGCA+AGG + Chr5:16971912-16971931 MsG0580025327.01.T01:CDS 45.0%
ACCATAGTGTCACCCTAGAA+CGG - Chr5:16974684-16974703 None:intergenic 45.0%
AGGTTTCTCCTTCGGATGTT+TGG - Chr5:16974918-16974937 None:intergenic 45.0%
CCAATTCCAATCCCTAGCAA+AGG - Chr5:16972875-16972894 None:intergenic 45.0%
CCTTTGCTAGGGATTGGAAT+TGG + Chr5:16972872-16972891 MsG0580025327.01.T01:intron 45.0%
CTATAAAGTCCCTGCCATGT+TGG + Chr5:16973758-16973777 MsG0580025327.01.T01:intron 45.0%
GAAAGGGACTCTTGCCAAAA+TGG - Chr5:16973894-16973913 None:intergenic 45.0%
GAAATAAGCACGACCCAGAT+CGG - Chr5:16972076-16972095 None:intergenic 45.0%
GGGTGACACTATGGTTAACT+AGG + Chr5:16974689-16974708 MsG0580025327.01.T01:intron 45.0%
GGTTCTCAGATTGAAGCTAG+AGG + Chr5:16971877-16971896 MsG0580025327.01.T01:CDS 45.0%
GTCTAACCAGGTATATGGAG+AGG - Chr5:16973565-16973584 None:intergenic 45.0%
TAATTAACTGGGGGCAAGAG+TGG + Chr5:16974165-16974184 MsG0580025327.01.T01:intron 45.0%
TCTGATCATATGTCCCACCA+GGG - Chr5:16972618-16972637 None:intergenic 45.0%
TCTTGCTTTGCATTAGCAGG+AGG + Chr5:16973827-16973846 MsG0580025327.01.T01:intron 45.0%
TTATACAGAGGTTGCTGCAG+AGG - Chr5:16974046-16974065 None:intergenic 45.0%
TTATGCCTCCAAACATCCGA+AGG + Chr5:16974907-16974926 MsG0580025327.01.T01:CDS 45.0%
TTGCAACCTTTGCTAGGGAT+TGG + Chr5:16972866-16972885 MsG0580025327.01.T01:intron 45.0%
TTTCTCCTTCGGATGTTTGG+AGG - Chr5:16974915-16974934 None:intergenic 45.0%
! ACACCTTCAATCAGAAGTGC+TGG + Chr5:16972274-16972293 MsG0580025327.01.T01:intron 45.0%
! ATTGAAGGTGTGCCCGATAT+GGG - Chr5:16972265-16972284 None:intergenic 45.0%
! GCATGTTGCTGCTTGTGATA+TGG + Chr5:16973323-16973342 MsG0580025327.01.T01:intron 45.0%
! TCTGGTTTCCTATCGGTGTT+GGG + Chr5:16972806-16972825 MsG0580025327.01.T01:intron 45.0%
!! ACCTTCAATCAGAAGTGCTG+GGG + Chr5:16972276-16972295 MsG0580025327.01.T01:intron 45.0%
!! CACCTTCAATCAGAAGTGCT+GGG + Chr5:16972275-16972294 MsG0580025327.01.T01:intron 45.0%
!! TTCTGGTTTCCTATCGGTGT+TGG + Chr5:16972805-16972824 MsG0580025327.01.T01:intron 45.0%
!!! AAAAAATCAATTTTTATTAT+TGG + Chr5:16971978-16971997 MsG0580025327.01.T01:intron 5.0%
!!! AAAAATCAATTTTTATTATT+GGG + Chr5:16971979-16971998 MsG0580025327.01.T01:intron 5.0%
!!! AATAATAAAAATTGATTTTT+TGG - Chr5:16971979-16971998 None:intergenic 5.0%
!!! AATTACTATTTTTTTATAAA+CGG + Chr5:16972777-16972796 MsG0580025327.01.T01:intron 5.0%
ACAGACACAAGAGGCCATGA+AGG + Chr5:16973726-16973745 MsG0580025327.01.T01:intron 50.0%
ACCCCAGCACTTCTGATTGA+AGG - Chr5:16972280-16972299 None:intergenic 50.0%
CACTAACACCAGACACGACA+TGG + Chr5:16972154-16972173 MsG0580025327.01.T01:intron 50.0%
CAGACACAAGAGGCCATGAA+GGG + Chr5:16973727-16973746 MsG0580025327.01.T01:intron 50.0%
CTCTGATCATATGTCCCACC+AGG - Chr5:16972619-16972638 None:intergenic 50.0%
GATCCTTCCTGAACCCAACA+TGG - Chr5:16973775-16973794 None:intergenic 50.0%
GATGACACAGGTTCAAGTCG+TGG - Chr5:16973859-16973878 None:intergenic 50.0%
GGGCAAGAGTGGTTGAATCT+AGG + Chr5:16974176-16974195 MsG0580025327.01.T01:intron 50.0%
TATAGCTGGTGGCCGTTCTA+GGG + Chr5:16974669-16974688 MsG0580025327.01.T01:CDS 50.0%
TCTGCTGGAGGTTTCTCCTT+CGG - Chr5:16974926-16974945 None:intergenic 50.0%
TGTCTGACACTGGCCCATAT+CGG + Chr5:16972249-16972268 MsG0580025327.01.T01:intron 50.0%
TTCCTGAACCCAACATGGCA+GGG - Chr5:16973770-16973789 None:intergenic 50.0%
! CAGATTGAAGCTAGAGGTGC+TGG + Chr5:16971883-16971902 MsG0580025327.01.T01:CDS 50.0%
! GATTGAAGGTGTGCCCGATA+TGG - Chr5:16972266-16972285 None:intergenic 50.0%
!! CTGGTTTCCTATCGGTGTTG+GGG + Chr5:16972807-16972826 MsG0580025327.01.T01:intron 50.0%
CTGCCATGTTGGGTTCAGGA+AGG + Chr5:16973769-16973788 MsG0580025327.01.T01:intron 55.0%
CTTCCTGAACCCAACATGGC+AGG - Chr5:16973771-16973790 None:intergenic 55.0%
GGCAAGCAAAGCCTGTCTCT+AGG + Chr5:16973463-16973482 MsG0580025327.01.T01:intron 55.0%
GTATAGCTGGTGGCCGTTCT+AGG + Chr5:16974668-16974687 MsG0580025327.01.T01:CDS 55.0%
GTCTGACACTGGCCCATATC+GGG + Chr5:16972250-16972269 MsG0580025327.01.T01:intron 55.0%
TCCCACCAGGGCTACAAGAA+CGG - Chr5:16972606-16972625 None:intergenic 55.0%
TTCTGCCGTTCTTGTAGCCC+TGG + Chr5:16972598-16972617 MsG0580025327.01.T01:intron 55.0%
!! GCCGTTCTAGGGTGACACTA+TGG + Chr5:16974680-16974699 MsG0580025327.01.T01:intron 55.0%
ATTGCGGCCCCAACACCGAT+AGG - Chr5:16972817-16972836 None:intergenic 60.0%
GCCGTTCTTGTAGCCCTGGT+GGG + Chr5:16972602-16972621 MsG0580025327.01.T01:intron 60.0%
GTCCCTGCCATGTTGGGTTC+AGG + Chr5:16973765-16973784 MsG0580025327.01.T01:intron 60.0%
TGCCGTTCTTGTAGCCCTGG+TGG + Chr5:16972601-16972620 MsG0580025327.01.T01:intron 60.0%
!! CAGAAGTGCTGGGGTTACCG+AGG + Chr5:16972285-16972304 MsG0580025327.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 16971811 16974955 16971811 ID=MsG0580025327.01;Name=MsG0580025327.01
Chr5 mRNA 16971811 16974955 16971811 ID=MsG0580025327.01.T01;Parent=MsG0580025327.01;Name=MsG0580025327.01.T01;_AED=0.45;_eAED=0.65;_QI=0|0|0|1|0|0|3|0|116
Chr5 exon 16971811 16971965 16971811 ID=MsG0580025327.01.T01:exon:2989;Parent=MsG0580025327.01.T01
Chr5 exon 16974645 16974690 16974645 ID=MsG0580025327.01.T01:exon:2990;Parent=MsG0580025327.01.T01
Chr5 exon 16974806 16974955 16974806 ID=MsG0580025327.01.T01:exon:2991;Parent=MsG0580025327.01.T01
Chr5 CDS 16971811 16971965 16971811 ID=MsG0580025327.01.T01:cds;Parent=MsG0580025327.01.T01
Chr5 CDS 16974645 16974690 16974645 ID=MsG0580025327.01.T01:cds;Parent=MsG0580025327.01.T01
Chr5 CDS 16974806 16974955 16974806 ID=MsG0580025327.01.T01:cds;Parent=MsG0580025327.01.T01
Gene Sequence

>MsG0580025327.01.T01

ATGACGCGGGGAAAGCAGAAGATCGAAGCGCAGAAACGAAACGCAGAGAAGAATCAGAAATCAAAGGGTTCTCAGATTGAAGCTAGAGGTGCTGGTCTCAAAATCACTTGCCCCATTTGCAAGGTTTTCTTTTCCTTCTCATCTTCTTCTATCATTTCGATACAATTCAAAGAATCATGTATAGCTGGTGGCCGTTCTAGGAATCTAGTGAGAACTTTTGAGTATCTATCAGGATTCTTCATACTGTTGTTTCACATTCTTTTTCAGGTCCAACTTGCAAATCCAAACCAACTTGCTGATCATTATGCCTCCAAACATCCGAAGGAGAAACCTCCAGCAGAGTCAAGCTAG
Protein sequence

>MsG0580025327.01.T01

MTRGKQKIEAQKRNAEKNQKSKGSQIEARGAGLKITCPICKVFFSFSSSSIISIQFKESCIAGGRSRNLVRTFEYLSGFFILLFHILFQVQLANPNQLADHYASKHPKEKPPAESS*