Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028478.01.T01 | XP_003615805.2 | 96.444 | 225 | 8 | 0 | 1 | 225 | 1 | 225 | 7.59E-125 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028478.01.T01 | Q9LMK2 | 67.021 | 188 | 52 | 2 | 1 | 186 | 1 | 180 | 6.83E-88 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028478.01.T01 | G7KEB2 | 96.444 | 225 | 8 | 0 | 1 | 225 | 1 | 225 | 3.63e-125 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048186.01 | MsG0580028478.01 | 0.808615 | 2.838382e-50 | 1.630356e-47 |
| MsG0180000085.01 | MsG0580028478.01 | 0.856986 | 2.219288e-62 | 5.394174e-59 |
| MsG0280010856.01 | MsG0580028478.01 | 0.812851 | 3.443528e-51 | 2.213254e-48 |
| MsG0280011093.01 | MsG0580028478.01 | 0.832837 | 7.524789e-56 | 8.511065e-53 |
| MsG0380012694.01 | MsG0580028478.01 | 0.829315 | 5.514460e-55 | 5.624754e-52 |
| MsG0380014869.01 | MsG0580028478.01 | 0.830210 | 3.338914e-55 | 3.494820e-52 |
| MsG0380014881.01 | MsG0580028478.01 | 0.857044 | 2.133692e-62 | 5.196581e-59 |
| MsG0480023832.01 | MsG0580028478.01 | 0.805812 | 1.114218e-49 | 5.951821e-47 |
| MsG0580025327.01 | MsG0580028478.01 | 0.817068 | 3.994926e-52 | 2.879982e-49 |
| MsG0380016702.01 | MsG0580028478.01 | 0.814231 | 1.711445e-51 | 1.141934e-48 |
| MsG0380017063.01 | MsG0580028478.01 | -0.809609 | 1.738630e-50 | 1.025529e-47 |
| MsG0580028478.01 | MsG0580029023.01 | 0.816011 | 6.888410e-52 | 4.824505e-49 |
| MsG0580028478.01 | MsG0680033623.01 | 0.835485 | 1.632998e-56 | 1.999743e-53 |
| MsG0580028478.01 | MsG0780038613.01 | 0.816395 | 5.653589e-52 | 4.001334e-49 |
| MsG0580028478.01 | MsG0780040160.01 | 0.823262 | 1.522935e-53 | 1.304746e-50 |
| MsG0580028478.01 | MsG0780040896.01 | 0.820789 | 5.697625e-53 | 4.552241e-50 |
| MsG0580028478.01 | MsG0880041883.01 | 0.826386 | 2.790692e-54 | 2.613435e-51 |
| MsG0580028478.01 | MsG0880045118.01 | 0.811149 | 8.086617e-51 | 4.967659e-48 |
| MsG0280007223.01 | MsG0580028478.01 | 0.822083 | 2.863861e-53 | 2.372721e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028478.01.T01 | MTR_5g072510 | 96.444 | 225 | 8 | 0 | 1 | 225 | 1 | 225 | 9.19e-129 | 362 |
| MsG0580028478.01.T01 | MTR_3g031830 | 75.000 | 180 | 41 | 2 | 3 | 178 | 4 | 183 | 1.69e-84 | 250 |
| MsG0580028478.01.T01 | MTR_4g094428 | 63.298 | 188 | 53 | 2 | 33 | 204 | 42 | 229 | 7.12e-81 | 241 |
| MsG0580028478.01.T01 | MTR_1g442860 | 80.000 | 125 | 25 | 0 | 37 | 161 | 65 | 189 | 1.39e-78 | 235 |
| MsG0580028478.01.T01 | MTR_1g075990 | 78.014 | 141 | 31 | 0 | 27 | 167 | 43 | 183 | 1.24e-75 | 227 |
| MsG0580028478.01.T01 | MTR_2g016110 | 67.550 | 151 | 48 | 1 | 20 | 170 | 19 | 168 | 3.10e-73 | 220 |
| MsG0580028478.01.T01 | MTR_7g097030 | 79.104 | 134 | 28 | 0 | 34 | 167 | 61 | 194 | 5.52e-72 | 218 |
| MsG0580028478.01.T01 | MTR_2g076400 | 73.333 | 135 | 36 | 0 | 36 | 170 | 32 | 166 | 7.36e-72 | 217 |
| MsG0580028478.01.T01 | MTR_1g069825 | 80.153 | 131 | 26 | 0 | 37 | 167 | 52 | 182 | 3.66e-71 | 216 |
| MsG0580028478.01.T01 | MTR_2g092950 | 65.517 | 145 | 50 | 0 | 16 | 160 | 2 | 146 | 1.05e-70 | 213 |
| MsG0580028478.01.T01 | MTR_4g079930 | 68.462 | 130 | 41 | 0 | 31 | 160 | 23 | 152 | 4.01e-70 | 212 |
| MsG0580028478.01.T01 | MTR_7g115700 | 67.568 | 148 | 42 | 4 | 36 | 180 | 26 | 170 | 8.89e-70 | 211 |
| MsG0580028478.01.T01 | MTR_1g080210 | 73.427 | 143 | 38 | 0 | 37 | 179 | 40 | 182 | 1.26e-68 | 209 |
| MsG0580028478.01.T01 | MTR_8g086350 | 72.800 | 125 | 34 | 0 | 36 | 160 | 30 | 154 | 3.27e-59 | 185 |
| MsG0580028478.01.T01 | MTR_1g114020 | 66.000 | 50 | 17 | 0 | 31 | 80 | 65 | 114 | 8.69e-20 | 83.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028478.01.T01 | AT1G07090 | 67.021 | 188 | 52 | 2 | 1 | 186 | 1 | 180 | 6.97e-89 | 260 |
| MsG0580028478.01.T01 | AT5G58500 | 68.715 | 179 | 42 | 3 | 35 | 212 | 17 | 182 | 5.20e-84 | 248 |
| MsG0580028478.01.T01 | AT2G31160 | 73.885 | 157 | 40 | 1 | 13 | 168 | 29 | 185 | 6.16e-74 | 223 |
| MsG0580028478.01.T01 | AT2G42610 | 72.794 | 136 | 37 | 0 | 34 | 169 | 22 | 157 | 1.83e-71 | 216 |
| MsG0580028478.01.T01 | AT2G42610 | 72.794 | 136 | 37 | 0 | 34 | 169 | 22 | 157 | 1.83e-71 | 216 |
| MsG0580028478.01.T01 | AT3G23290 | 81.746 | 126 | 23 | 0 | 36 | 161 | 47 | 172 | 5.44e-70 | 213 |
| MsG0580028478.01.T01 | AT5G28490 | 70.395 | 152 | 40 | 1 | 15 | 166 | 8 | 154 | 8.80e-70 | 212 |
| MsG0580028478.01.T01 | AT3G04510 | 76.154 | 130 | 31 | 0 | 37 | 166 | 33 | 162 | 1.01e-67 | 207 |
| MsG0580028478.01.T01 | AT1G78815 | 71.200 | 125 | 36 | 0 | 36 | 160 | 39 | 163 | 2.79e-67 | 206 |
| MsG0580028478.01.T01 | AT4G18610 | 67.460 | 126 | 40 | 1 | 36 | 160 | 36 | 161 | 1.92e-63 | 196 |
| MsG0580028478.01.T01 | AT1G16910 | 66.165 | 133 | 45 | 0 | 33 | 165 | 19 | 151 | 1.15e-62 | 193 |
Find 75 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAGTATCTTGATCAATT+TGG | 0.199090 | 5:+81129550 | MsG0580028478.01.T01:CDS |
| ACGCTCTCATCGGACGTCTT+AGG | 0.202990 | 5:+81129671 | MsG0580028478.01.T01:CDS |
| CTGCATAGTGCTAGGGTTAA+TGG | 0.263262 | 5:-81129505 | None:intergenic |
| CGGCTTGGTGTTGGTGTTGC+TGG | 0.267162 | 5:-81129418 | None:intergenic |
| GGGCTGTTAGGATTTATCTA+AGG | 0.292690 | 5:+81129746 | MsG0580028478.01.T01:CDS |
| GTGATAGGTTGTCCGTATTT+CGG | 0.338189 | 5:+81129589 | MsG0580028478.01.T01:CDS |
| CGTTTGGAACTCGGGCTGTT+AGG | 0.341199 | 5:+81129734 | MsG0580028478.01.T01:CDS |
| CTTCCCCACGCTTGTTTAAG+AGG | 0.348758 | 5:-81129643 | None:intergenic |
| CGCTCTCATCGGACGTCTTA+GGG | 0.360799 | 5:+81129672 | MsG0580028478.01.T01:CDS |
| GATTTATCTAAGGGAAGTTA+AGG | 0.378556 | 5:+81129756 | MsG0580028478.01.T01:CDS |
| GTTGGTGTTGCTGGTGATGA+AGG | 0.383238 | 5:-81129409 | None:intergenic |
| CGAGGAAAACGGAGGGAAAC+CGG | 0.399464 | 5:+81129702 | MsG0580028478.01.T01:CDS |
| TGTGACGGTGGTAGTATTAT+TGG | 0.411712 | 5:-81129953 | None:intergenic |
| GATGGTAACACCGAGAGAAT+TGG | 0.417561 | 5:+81129910 | MsG0580028478.01.T01:CDS |
| AAAACTAAGGTGCACGTGAT+AGG | 0.426316 | 5:+81129574 | MsG0580028478.01.T01:CDS |
| GAGTAATCCGTTTGGAACTC+GGG | 0.435870 | 5:+81129726 | MsG0580028478.01.T01:CDS |
| ACGTCTTAGGGCTGCTTTCG+AGG | 0.442268 | 5:+81129684 | MsG0580028478.01.T01:CDS |
| AGTCACAAAAGCGACGAGAC+TGG | 0.455576 | 5:+81129446 | MsG0580028478.01.T01:CDS |
| GCGCAAGGAGAAGGTGGGTT+AGG | 0.457008 | 5:-81129616 | None:intergenic |
| GTGCTCCACTGCATAGTGCT+AGG | 0.463475 | 5:-81129513 | None:intergenic |
| TGTGGTTACGTAGATATTGT+TGG | 0.476151 | 5:-81129477 | None:intergenic |
| GGTGACGGTGGTGGTATTGA+TGG | 0.478331 | 5:+81129892 | MsG0580028478.01.T01:CDS |
| TCGGCAATGGAAGCTGCATC+TGG | 0.503318 | 5:+81129325 | None:intergenic |
| ACCTATTGTTAGTGTTAGTA+CGG | 0.504598 | 5:+81129975 | MsG0580028478.01.T01:CDS |
| GACTCGTAGCGGCTTGGTGT+TGG | 0.507637 | 5:-81129427 | None:intergenic |
| AGAGTAATCCGTTTGGAACT+CGG | 0.507915 | 5:+81129725 | MsG0580028478.01.T01:CDS |
| AGGGCTGCTTTCGAGGAAAA+CGG | 0.508000 | 5:+81129691 | MsG0580028478.01.T01:CDS |
| GGCTGTTAGGATTTATCTAA+GGG | 0.509601 | 5:+81129747 | MsG0580028478.01.T01:CDS |
| GCCGTACTAACACTAACAAT+AGG | 0.510181 | 5:-81129976 | None:intergenic |
| GGGTTAGGTTGTCCGAAATA+CGG | 0.513501 | 5:-81129601 | None:intergenic |
| GTTGCTGGTGATGAAGGTTG+TGG | 0.519042 | 5:-81129403 | None:intergenic |
| AAACCGGAGAGTAATCCGTT+TGG | 0.519738 | 5:+81129718 | MsG0580028478.01.T01:CDS |
| AGAGGACAAGCGCAAGGAGA+AGG | 0.525742 | 5:-81129625 | None:intergenic |
| GGTTGTGGTTGTGCTGCCTC+CGG | 0.526300 | 5:-81129388 | None:intergenic |
| GACGGTGGTAGTATTATTGG+TGG | 0.529081 | 5:-81129950 | None:intergenic |
| GGACAAGCGCAAGGAGAAGG+TGG | 0.534211 | 5:-81129622 | None:intergenic |
| GGTGTTTCTGATGGTATTGA+CGG | 0.536014 | 5:-81129364 | None:intergenic |
| GCCTCCGGTGGTGTTTCTGA+TGG | 0.539718 | 5:-81129373 | None:intergenic |
| CTAGGGTTAATGGTGGTTTG+TGG | 0.548564 | 5:-81129495 | None:intergenic |
| GATGGTATTGACGGTGGTGG+TGG | 0.551307 | 5:-81129355 | None:intergenic |
| TGCTCCACTGCATAGTGCTA+GGG | 0.553244 | 5:-81129512 | None:intergenic |
| CTTGTCCTCTTAAACAAGCG+TGG | 0.557238 | 5:+81129638 | MsG0580028478.01.T01:CDS |
| TTGTCCTCTTAAACAAGCGT+GGG | 0.559800 | 5:+81129639 | MsG0580028478.01.T01:CDS |
| TGTGGACTTGGTGACGGTGG+TGG | 0.565405 | 5:+81129883 | MsG0580028478.01.T01:CDS |
| AACACCAGCTCCAATTCTCT+CGG | 0.568073 | 5:-81129920 | None:intergenic |
| GGAAGTCTTGACGCTCTCAT+CGG | 0.568235 | 5:+81129661 | MsG0580028478.01.T01:CDS |
| GTTCCAAACGGATTACTCTC+CGG | 0.573710 | 5:-81129721 | None:intergenic |
| GCGGTGAATAGTTGTGGACT+TGG | 0.576982 | 5:+81129871 | MsG0580028478.01.T01:CDS |
| ACAGCAGCGGTGAATAGTTG+TGG | 0.593776 | 5:+81129865 | MsG0580028478.01.T01:CDS |
| TATCTAAGGGAAGTTAAGGA+TGG | 0.596771 | 5:+81129760 | MsG0580028478.01.T01:CDS |
| TGTGGTTGTGCTGCCTCCGG+TGG | 0.598177 | 5:-81129385 | None:intergenic |
| ATTGCAGCAGCGGTGACAGT+GGG | 0.601286 | 5:-81129832 | None:intergenic |
| GATGGTCAAGCTAAAGCTAG+AGG | 0.604205 | 5:+81129778 | MsG0580028478.01.T01:CDS |
| TCTGATGGTATTGACGGTGG+TGG | 0.606284 | 5:-81129358 | None:intergenic |
| AACACTAACAATAGGTGTGA+CGG | 0.607101 | 5:-81129968 | None:intergenic |
| GCAATGGAAGCTGCATCTGG+TGG | 0.607187 | 5:+81129328 | None:intergenic |
| TATTGCAGCAGCGGTGACAG+TGG | 0.608654 | 5:-81129833 | None:intergenic |
| CTAACAGCCCGAGTTCCAAA+CGG | 0.612600 | 5:-81129733 | None:intergenic |
| GACAAGCGCAAGGAGAAGGT+GGG | 0.614541 | 5:-81129621 | None:intergenic |
| TGTTTAAGAGGACAAGCGCA+AGG | 0.622250 | 5:-81129631 | None:intergenic |
| AATAGTTGTGGACTTGGTGA+CGG | 0.623288 | 5:+81129877 | MsG0580028478.01.T01:CDS |
| GAGAGAATTGGAGCTGGTGT+TGG | 0.623654 | 5:+81129922 | MsG0580028478.01.T01:CDS |
| AGTTGATATTATTGCAGCAG+CGG | 0.629514 | 5:-81129842 | None:intergenic |
| CATAGTGCTAGGGTTAATGG+TGG | 0.640579 | 5:-81129502 | None:intergenic |
| AACACCGAGAGAATTGGAGC+TGG | 0.649987 | 5:+81129916 | MsG0580028478.01.T01:CDS |
| CTGCTTTCGAGGAAAACGGA+GGG | 0.652276 | 5:+81129695 | MsG0580028478.01.T01:CDS |
| AATAATATCAACTACAGCAG+CGG | 0.669859 | 5:+81129852 | MsG0580028478.01.T01:CDS |
| GCTGCTTTCGAGGAAAACGG+AGG | 0.681689 | 5:+81129694 | MsG0580028478.01.T01:CDS |
| AGTTGTGGACTTGGTGACGG+TGG | 0.683103 | 5:+81129880 | MsG0580028478.01.T01:CDS |
| ACCATCAGAAACACCACCGG+AGG | 0.690449 | 5:+81129372 | MsG0580028478.01.T01:CDS |
| AATACCATCAGAAACACCAC+CGG | 0.691441 | 5:+81129369 | MsG0580028478.01.T01:CDS |
| TTAACCCTAGCACTATGCAG+TGG | 0.696826 | 5:+81129508 | MsG0580028478.01.T01:CDS |
| GTTTCTGATGGTATTGACGG+TGG | 0.698342 | 5:-81129361 | None:intergenic |
| TGTCCTCTTAAACAAGCGTG+GGG | 0.710607 | 5:+81129640 | MsG0580028478.01.T01:CDS |
| ACTAACAATAGGTGTGACGG+TGG | 0.726512 | 5:-81129965 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGATCAATTTGGAAAAACTA+AGG | + | Chr5:81129561-81129580 | MsG0580028478.01.T01:CDS | 25.0% |
| ! | TTCCTTATGAGAAAAAGAAA+CGG | + | Chr5:81129803-81129822 | MsG0580028478.01.T01:CDS | 25.0% |
| AATAATATCAACTACAGCAG+CGG | + | Chr5:81129852-81129871 | MsG0580028478.01.T01:CDS | 30.0% | |
| ACCTATTGTTAGTGTTAGTA+CGG | + | Chr5:81129975-81129994 | MsG0580028478.01.T01:CDS | 30.0% | |
| CTCAAGTATCTTGATCAATT+TGG | + | Chr5:81129550-81129569 | MsG0580028478.01.T01:CDS | 30.0% | |
| GATTTATCTAAGGGAAGTTA+AGG | + | Chr5:81129756-81129775 | MsG0580028478.01.T01:CDS | 30.0% | |
| ! | TTCCGTTTCTTTTTCTCATA+AGG | - | Chr5:81129808-81129827 | None:intergenic | 30.0% |
| AACACTAACAATAGGTGTGA+CGG | - | Chr5:81129971-81129990 | None:intergenic | 35.0% | |
| ATGAGAAAAAGAAACGGAAG+AGG | + | Chr5:81129809-81129828 | MsG0580028478.01.T01:CDS | 35.0% | |
| GGCTGTTAGGATTTATCTAA+GGG | + | Chr5:81129747-81129766 | MsG0580028478.01.T01:CDS | 35.0% | |
| TATCTAAGGGAAGTTAAGGA+TGG | + | Chr5:81129760-81129779 | MsG0580028478.01.T01:CDS | 35.0% | |
| TGTGGTTACGTAGATATTGT+TGG | - | Chr5:81129480-81129499 | None:intergenic | 35.0% | |
| ! | AGTTGATATTATTGCAGCAG+CGG | - | Chr5:81129845-81129864 | None:intergenic | 35.0% |
| AAAACTAAGGTGCACGTGAT+AGG | + | Chr5:81129574-81129593 | MsG0580028478.01.T01:CDS | 40.0% | |
| AATACCATCAGAAACACCAC+CGG | + | Chr5:81129369-81129388 | MsG0580028478.01.T01:CDS | 40.0% | |
| GCCGTACTAACACTAACAAT+AGG | - | Chr5:81129979-81129998 | None:intergenic | 40.0% | |
| GGGCTGTTAGGATTTATCTA+AGG | + | Chr5:81129746-81129765 | MsG0580028478.01.T01:CDS | 40.0% | |
| GTGATAGGTTGTCCGTATTT+CGG | + | Chr5:81129589-81129608 | MsG0580028478.01.T01:CDS | 40.0% | |
| TGTGACGGTGGTAGTATTAT+TGG | - | Chr5:81129956-81129975 | None:intergenic | 40.0% | |
| TTGTCCTCTTAAACAAGCGT+GGG | + | Chr5:81129639-81129658 | MsG0580028478.01.T01:CDS | 40.0% | |
| ! | AGAGTAATCCGTTTGGAACT+CGG | + | Chr5:81129725-81129744 | MsG0580028478.01.T01:CDS | 40.0% |
| ! | GGTGTTTCTGATGGTATTGA+CGG | - | Chr5:81129367-81129386 | None:intergenic | 40.0% |
| !! | AATAGTTGTGGACTTGGTGA+CGG | + | Chr5:81129877-81129896 | MsG0580028478.01.T01:CDS | 40.0% |
| AAACCGGAGAGTAATCCGTT+TGG | + | Chr5:81129718-81129737 | MsG0580028478.01.T01:CDS | 45.0% | |
| AACACCAGCTCCAATTCTCT+CGG | - | Chr5:81129923-81129942 | None:intergenic | 45.0% | |
| ACTAACAATAGGTGTGACGG+TGG | - | Chr5:81129968-81129987 | None:intergenic | 45.0% | |
| CATAGTGCTAGGGTTAATGG+TGG | - | Chr5:81129505-81129524 | None:intergenic | 45.0% | |
| CTAGGGTTAATGGTGGTTTG+TGG | - | Chr5:81129498-81129517 | None:intergenic | 45.0% | |
| CTGCATAGTGCTAGGGTTAA+TGG | - | Chr5:81129508-81129527 | None:intergenic | 45.0% | |
| CTTGTCCTCTTAAACAAGCG+TGG | + | Chr5:81129638-81129657 | MsG0580028478.01.T01:CDS | 45.0% | |
| GACGGTGGTAGTATTATTGG+TGG | - | Chr5:81129953-81129972 | None:intergenic | 45.0% | |
| GATGGTAACACCGAGAGAAT+TGG | + | Chr5:81129910-81129929 | MsG0580028478.01.T01:CDS | 45.0% | |
| GATGGTCAAGCTAAAGCTAG+AGG | + | Chr5:81129778-81129797 | MsG0580028478.01.T01:CDS | 45.0% | |
| TGTCCTCTTAAACAAGCGTG+GGG | + | Chr5:81129640-81129659 | MsG0580028478.01.T01:CDS | 45.0% | |
| TGTTTAAGAGGACAAGCGCA+AGG | - | Chr5:81129634-81129653 | None:intergenic | 45.0% | |
| TTAACCCTAGCACTATGCAG+TGG | + | Chr5:81129508-81129527 | MsG0580028478.01.T01:CDS | 45.0% | |
| ! | GAGTAATCCGTTTGGAACTC+GGG | + | Chr5:81129726-81129745 | MsG0580028478.01.T01:CDS | 45.0% |
| ! | GGGTTAGGTTGTCCGAAATA+CGG | - | Chr5:81129604-81129623 | None:intergenic | 45.0% |
| !! | GTTCCAAACGGATTACTCTC+CGG | - | Chr5:81129724-81129743 | None:intergenic | 45.0% |
| !! | GTTTCTGATGGTATTGACGG+TGG | - | Chr5:81129364-81129383 | None:intergenic | 45.0% |
| AACACCGAGAGAATTGGAGC+TGG | + | Chr5:81129916-81129935 | MsG0580028478.01.T01:CDS | 50.0% | |
| ACAGCAGCGGTGAATAGTTG+TGG | + | Chr5:81129865-81129884 | MsG0580028478.01.T01:CDS | 50.0% | |
| AGTCACAAAAGCGACGAGAC+TGG | + | Chr5:81129446-81129465 | MsG0580028478.01.T01:CDS | 50.0% | |
| CTAACAGCCCGAGTTCCAAA+CGG | - | Chr5:81129736-81129755 | None:intergenic | 50.0% | |
| CTGCTTTCGAGGAAAACGGA+GGG | + | Chr5:81129695-81129714 | MsG0580028478.01.T01:CDS | 50.0% | |
| CTTCCCCACGCTTGTTTAAG+AGG | - | Chr5:81129646-81129665 | None:intergenic | 50.0% | |
| GAGAGAATTGGAGCTGGTGT+TGG | + | Chr5:81129922-81129941 | MsG0580028478.01.T01:CDS | 50.0% | |
| GCGGTGAATAGTTGTGGACT+TGG | + | Chr5:81129871-81129890 | MsG0580028478.01.T01:CDS | 50.0% | |
| GGAAGTCTTGACGCTCTCAT+CGG | + | Chr5:81129661-81129680 | MsG0580028478.01.T01:CDS | 50.0% | |
| TGCTCCACTGCATAGTGCTA+GGG | - | Chr5:81129515-81129534 | None:intergenic | 50.0% | |
| ! | AGGGCTGCTTTCGAGGAAAA+CGG | + | Chr5:81129691-81129710 | MsG0580028478.01.T01:CDS | 50.0% |
| ! | GTTGCTGGTGATGAAGGTTG+TGG | - | Chr5:81129406-81129425 | None:intergenic | 50.0% |
| ! | TTTTGTGACTCGTAGCGGCT+TGG | - | Chr5:81129436-81129455 | None:intergenic | 50.0% |
| !! | GTTGGTGTTGCTGGTGATGA+AGG | - | Chr5:81129412-81129431 | None:intergenic | 50.0% |
| !! | TCTGATGGTATTGACGGTGG+TGG | - | Chr5:81129361-81129380 | None:intergenic | 50.0% |
| !!! | GTCGCTTTTGTGACTCGTAG+CGG | - | Chr5:81129441-81129460 | None:intergenic | 50.0% |
| ACCATCAGAAACACCACCGG+AGG | + | Chr5:81129372-81129391 | MsG0580028478.01.T01:CDS | 55.0% | |
| ACGCTCTCATCGGACGTCTT+AGG | + | Chr5:81129671-81129690 | MsG0580028478.01.T01:CDS | 55.0% | |
| AGAGGACAAGCGCAAGGAGA+AGG | - | Chr5:81129628-81129647 | None:intergenic | 55.0% | |
| ATTGCAGCAGCGGTGACAGT+GGG | - | Chr5:81129835-81129854 | None:intergenic | 55.0% | |
| CGAGGAAAACGGAGGGAAAC+CGG | + | Chr5:81129702-81129721 | MsG0580028478.01.T01:CDS | 55.0% | |
| CGCTCTCATCGGACGTCTTA+GGG | + | Chr5:81129672-81129691 | MsG0580028478.01.T01:CDS | 55.0% | |
| GACAAGCGCAAGGAGAAGGT+GGG | - | Chr5:81129624-81129643 | None:intergenic | 55.0% | |
| GTGCTCCACTGCATAGTGCT+AGG | - | Chr5:81129516-81129535 | None:intergenic | 55.0% | |
| TATTGCAGCAGCGGTGACAG+TGG | - | Chr5:81129836-81129855 | None:intergenic | 55.0% | |
| ! | ACGTCTTAGGGCTGCTTTCG+AGG | + | Chr5:81129684-81129703 | MsG0580028478.01.T01:CDS | 55.0% |
| ! | CGTTTGGAACTCGGGCTGTT+AGG | + | Chr5:81129734-81129753 | MsG0580028478.01.T01:CDS | 55.0% |
| ! | GCTGCTTTCGAGGAAAACGG+AGG | + | Chr5:81129694-81129713 | MsG0580028478.01.T01:CDS | 55.0% |
| ! | GGTGACGGTGGTGGTATTGA+TGG | + | Chr5:81129892-81129911 | MsG0580028478.01.T01:CDS | 55.0% |
| !! | AGTTGTGGACTTGGTGACGG+TGG | + | Chr5:81129880-81129899 | MsG0580028478.01.T01:CDS | 55.0% |
| !! | GATGGTATTGACGGTGGTGG+TGG | - | Chr5:81129358-81129377 | None:intergenic | 55.0% |
| GGACAAGCGCAAGGAGAAGG+TGG | - | Chr5:81129625-81129644 | None:intergenic | 60.0% | |
| GGTTGTGGTTGTGCTGCCTC+CGG | - | Chr5:81129391-81129410 | None:intergenic | 60.0% | |
| ! | GCCTCCGGTGGTGTTTCTGA+TGG | - | Chr5:81129376-81129395 | None:intergenic | 60.0% |
| ! | GCGCAAGGAGAAGGTGGGTT+AGG | - | Chr5:81129619-81129638 | None:intergenic | 60.0% |
| !! | CGGCTTGGTGTTGGTGTTGC+TGG | - | Chr5:81129421-81129440 | None:intergenic | 60.0% |
| !! | GACTCGTAGCGGCTTGGTGT+TGG | - | Chr5:81129430-81129449 | None:intergenic | 60.0% |
| !! | TGTGGACTTGGTGACGGTGG+TGG | + | Chr5:81129883-81129902 | MsG0580028478.01.T01:CDS | 60.0% |
| TGTGGTTGTGCTGCCTCCGG+TGG | - | Chr5:81129388-81129407 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 81129331 | 81130008 | 81129331 | ID=MsG0580028478.01;Name=MsG0580028478.01 |
| Chr5 | mRNA | 81129331 | 81130008 | 81129331 | ID=MsG0580028478.01.T01;Parent=MsG0580028478.01;Name=MsG0580028478.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|225 |
| Chr5 | exon | 81129331 | 81130008 | 81129331 | ID=MsG0580028478.01.T01:exon:5890;Parent=MsG0580028478.01.T01 |
| Chr5 | CDS | 81129331 | 81130008 | 81129331 | ID=MsG0580028478.01.T01:cds;Parent=MsG0580028478.01.T01 |
| Gene Sequence |
| Protein sequence |
