AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025397.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025397.01.T01 MTR_5g027790 90.055 181 8 1 1 171 1 181 2.97e-117 333
MsG0580025397.01.T01 MTR_2g012560 58.378 185 62 3 1 171 1 184 2.33e-67 207
MsG0580025397.01.T01 MTR_4g046110 50.000 208 61 6 1 171 1 202 3.76e-62 194
MsG0580025397.01.T01 MTR_4g090510 50.472 212 59 5 1 171 1 207 4.24e-62 194
MsG0580025397.01.T01 MTR_2g012560 57.386 176 60 3 1 162 1 175 4.34e-61 191
MsG0580025397.01.T01 MTR_2g090115 45.631 206 67 5 4 171 5 203 1.66e-57 182
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025397.01.T01 AT1G32050 71.038 183 36 6 1 171 1 178 9.55e-85 250
MsG0580025397.01.T01 AT1G61250 57.754 187 61 5 1 171 1 185 6.67e-66 203
MsG0580025397.01.T01 AT1G61250 57.754 187 61 5 1 171 1 185 9.05e-66 202
MsG0580025397.01.T01 AT1G11180 54.497 189 66 5 1 171 1 187 3.00e-59 186
MsG0580025397.01.T01 AT1G11180 54.497 189 66 5 1 171 1 187 3.50e-59 186
MsG0580025397.01.T01 AT1G03550 52.486 181 67 4 5 171 4 179 1.85e-58 182
MsG0580025397.01.T01 AT1G03550 52.486 181 67 4 5 171 4 179 1.90e-58 181
MsG0580025397.01.T01 AT1G03550 52.486 181 67 4 5 171 4 179 3.26e-58 182
MsG0580025397.01.T01 AT1G03550 52.486 181 67 4 5 171 4 179 6.71e-58 182
MsG0580025397.01.T01 AT1G03550 52.486 181 67 4 5 171 4 179 1.16e-57 181
MsG0580025397.01.T01 AT2G20840 51.087 184 71 5 1 171 1 178 2.67e-57 181
MsG0580025397.01.T01 AT1G11180 50.990 202 66 5 1 171 1 200 7.23e-57 180
MsG0580025397.01.T01 AT2G20840 57.353 136 47 2 46 171 1 135 2.38e-50 162
MsG0580025397.01.T01 AT2G20840 57.353 136 47 2 46 171 1 135 2.38e-50 162
MsG0580025397.01.T01 AT1G03550 55.462 119 50 1 56 171 2 120 3.31e-42 140
MsG0580025397.01.T01 AT1G03550 59.048 105 40 1 70 171 16 120 3.63e-40 135

Find 50 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTTAGAATACCGAAAA+TGG 0.190870 5:+18029851 None:intergenic
GCATCCGAACCAGCTGGTTT+TGG 0.314793 5:-18028130 MsG0580025397.01.T01:CDS
TTCCCCTTTCATATGTGCTT+TGG 0.332783 5:-18026850 MsG0580025397.01.T01:CDS
CTTCGAAAGGATTGGGATCA+TGG 0.339371 5:+18029888 None:intergenic
TGCTCAGAGACTGCAATATT+CGG 0.352061 5:-18027472 MsG0580025397.01.T01:CDS
TCTTCTTCTTCGAAAGGATT+GGG 0.387663 5:+18029881 None:intergenic
CGTGGGAAGCTGATTTAAAA+AGG 0.387765 5:-18027935 MsG0580025397.01.T01:CDS
TTCTTCTTCTTCGAAAGGAT+TGG 0.394848 5:+18029880 None:intergenic
TGCGACAGTTGACATTCCTT+TGG 0.398015 5:-18028095 MsG0580025397.01.T01:CDS
TTTCATATGTGCTTTGGTAC+AGG 0.399767 5:-18026844 MsG0580025397.01.T01:CDS
GGGATCATGGTTGCGATTCA+TGG 0.400694 5:+18029901 None:intergenic
TCGGCCTTTGCTAGTTGGTT+GGG 0.403870 5:-18027453 MsG0580025397.01.T01:intron
TTGACCAAAACCAGCTGGTT+CGG 0.410475 5:+18028126 None:intergenic
TGCAGTCTCTGAGCATGAAC+TGG 0.423052 5:+18027480 None:intergenic
GCAATATCATGGTGAATGAT+TGG 0.423895 5:+18027513 None:intergenic
AATATTCGGCCTTTGCTAGT+TGG 0.435604 5:-18027458 MsG0580025397.01.T01:CDS
TTCGGCCTTTGCTAGTTGGT+TGG 0.440836 5:-18027454 MsG0580025397.01.T01:CDS
GCAGTGATTTATGCGCTGCT+TGG 0.452548 5:-18026875 MsG0580025397.01.T01:CDS
GGCCAATTCTTATCATCAAC+GGG 0.453219 5:+18027546 None:intergenic
CAGTGATTTATGCGCTGCTT+GGG 0.460483 5:-18026874 MsG0580025397.01.T01:CDS
TTTACCTCATAGCACGATAG+AGG 0.479958 5:+18026819 None:intergenic
TTGTCTGTTGGATCAGAGGC+GGG 0.498802 5:-18027009 MsG0580025397.01.T01:CDS
AGCATGAACTGGAATCTCAT+TGG 0.500620 5:+18027491 None:intergenic
CAATATCATGGTGAATGATT+GGG 0.504058 5:+18027514 None:intergenic
TTGACTTCTTCTTCTTCGAA+AGG 0.504243 5:+18029875 None:intergenic
TGCCCGTTGATGATAAGAAT+TGG 0.505693 5:-18027548 MsG0580025397.01.T01:CDS
GAATCTCATTGGCAATATCA+TGG 0.518037 5:+18027502 None:intergenic
GTACCAAAGCACATATGAAA+GGG 0.521793 5:+18026847 None:intergenic
AGGTCAAGAGCTAGCAGCGT+GGG 0.541856 5:-18027952 MsG0580025397.01.T01:CDS
GGCCCCTCTATCGTGCTATG+AGG 0.544924 5:-18026823 MsG0580025397.01.T01:CDS
GAATTCTTACAGAATGGTGT+TGG 0.545034 5:-18028178 MsG0580025397.01.T01:intron
GTCTGTTGGATCAGAGGCGG+GGG 0.551950 5:-18027007 MsG0580025397.01.T01:intron
CCGTTGGCATCCGAACCAGC+TGG 0.553290 5:-18028136 MsG0580025397.01.T01:CDS
AAAATCACGTGTTCCACCGT+TGG 0.568521 5:-18028152 MsG0580025397.01.T01:CDS
TGTCTTTGACCAAAACCAGC+TGG 0.572669 5:+18028121 None:intergenic
AGGCCAATTCTTATCATCAA+CGG 0.578386 5:+18027545 None:intergenic
TTACCTCATAGCACGATAGA+GGG 0.588141 5:+18026820 None:intergenic
TGTCTGTTGGATCAGAGGCG+GGG 0.588218 5:-18027008 MsG0580025397.01.T01:CDS
GTGATTGTCTGTTGGATCAG+AGG 0.588719 5:-18027013 MsG0580025397.01.T01:CDS
TGTACCAAAGCACATATGAA+AGG 0.589686 5:+18026846 None:intergenic
ATTGTCTGTTGGATCAGAGG+CGG 0.593788 5:-18027010 MsG0580025397.01.T01:CDS
TAGTTGCAGTGATTGTCTGT+TGG 0.598374 5:-18027021 MsG0580025397.01.T01:CDS
ATTACATTTGAAGTATCCAA+AGG 0.600986 5:+18028079 None:intergenic
CCAGCTGGTTCGGATGCCAA+CGG 0.640710 5:+18028136 None:intergenic
CATACCCAACCAACTAGCAA+AGG 0.645279 5:+18027449 None:intergenic
GCAGCGCATAAATCACTGCA+AGG 0.653221 5:+18026879 None:intergenic
TACCAAAGCACATATGAAAG+GGG 0.656856 5:+18026848 None:intergenic
GCTGGTTCGGATGCCAACGG+TGG 0.667140 5:+18028139 None:intergenic
TACCTCATAGCACGATAGAG+GGG 0.671746 5:+18026821 None:intergenic
AAGGTCAAGAGCTAGCAGCG+TGG 0.719415 5:-18027953 MsG0580025397.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAACTAAAAATAGAAA+TGG + Chr5:18026938-18026957 None:intergenic 10.0%
!! AAGTTCTCTAATAAAAATAT+CGG + Chr5:18027919-18027938 None:intergenic 15.0%
!! AGAACAAATATAAATATAAG+AGG - Chr5:18027841-18027860 MsG0580025397.01.T01:intron 15.0%
!! ATAACTAAAATGAAACAAAA+AGG + Chr5:18028492-18028511 None:intergenic 15.0%
!! ATATTAGATAATATACACAT+TGG + Chr5:18028293-18028312 None:intergenic 15.0%
!! ATTCTTTATGATGTTTATTT+AGG - Chr5:18028728-18028747 MsG0580025397.01.T01:intron 15.0%
!! ATTTAATGTAAAGAAATAAG+AGG + Chr5:18028002-18028021 None:intergenic 15.0%
!! GATAAAAACTTAAATATGAT+TGG + Chr5:18028424-18028443 None:intergenic 15.0%
!! TTCTTTATGATGTTTATTTA+GGG - Chr5:18028729-18028748 MsG0580025397.01.T01:intron 15.0%
!!! ATTTAAGATTCTTTTTGATA+CGG - Chr5:18028694-18028713 MsG0580025397.01.T01:intron 15.0%
!!! TTTTTATTAGAGAACTTATA+AGG - Chr5:18027922-18027941 MsG0580025397.01.T01:CDS 15.0%
!! AATAATAGCAGTATTATTCT+CGG - Chr5:18028076-18028095 MsG0580025397.01.T01:intron 20.0%
!! ATTTAAATACTGCATCTATA+AGG + Chr5:18028340-18028359 None:intergenic 20.0%
!! GCTTTCTTAAAAAAAATTGA+GGG - Chr5:18027799-18027818 MsG0580025397.01.T01:intron 20.0%
!! TCTTTATGATGTTTATTTAG+GGG - Chr5:18028730-18028749 MsG0580025397.01.T01:intron 20.0%
!! TGCTTTCTTAAAAAAAATTG+AGG - Chr5:18027798-18027817 MsG0580025397.01.T01:intron 20.0%
!! TTAAATTCCAAAGTACAAAT+TGG - Chr5:18028354-18028373 MsG0580025397.01.T01:intron 20.0%
!! TTAAATTCCAATTTGTACTT+TGG + Chr5:18028364-18028383 None:intergenic 20.0%
!!! AGAATTCTTTTATATAATCG+GGG + Chr5:18027953-18027972 None:intergenic 20.0%
!!! CAGAATTCTTTTATATAATC+GGG + Chr5:18027954-18027973 None:intergenic 20.0%
!!! GCAGAATTCTTTTATATAAT+CGG + Chr5:18027955-18027974 None:intergenic 20.0%
!!! TTTAAGATTCTTTTTGATAC+GGG - Chr5:18028695-18028714 MsG0580025397.01.T01:intron 20.0%
!!! TTTCAAGTTAGAATCAATTA+CGG - Chr5:18027345-18027364 MsG0580025397.01.T01:intron 20.0%
!!! TTTTTATCCAAAGTACAAAT+TGG - Chr5:18028436-18028455 MsG0580025397.01.T01:intron 20.0%
! AAAACTACCAATTTGTACTT+TGG + Chr5:18028446-18028465 None:intergenic 25.0%
! AATGATTGACACAATAATTG+AGG - Chr5:18027771-18027790 MsG0580025397.01.T01:intron 25.0%
! ATAATACTGCTATTATTGCT+AGG + Chr5:18028073-18028092 None:intergenic 25.0%
! ATGATTGACACAATAATTGA+GGG - Chr5:18027772-18027791 MsG0580025397.01.T01:intron 25.0%
! CTTTATGATGTTTATTTAGG+GGG - Chr5:18028731-18028750 MsG0580025397.01.T01:intron 25.0%
! GAAGAAAAGATAATTAGACA+GGG + Chr5:18029630-18029649 None:intergenic 25.0%
! TATTAGAGAAACCATTAGAA+AGG - Chr5:18027599-18027618 MsG0580025397.01.T01:intron 25.0%
!! AATGAAATGAGATGTTTTCT+TGG - Chr5:18029484-18029503 MsG0580025397.01.T01:intron 25.0%
!! ATTACATTTGAAGTATCCAA+AGG + Chr5:18028643-18028662 None:intergenic 25.0%
!! CAAAATCAATTTTATGTGTC+TGG - Chr5:18027376-18027395 MsG0580025397.01.T01:intron 25.0%
!! GTTTTTCATTCTGTTTATTG+TGG - Chr5:18028519-18028538 MsG0580025397.01.T01:intron 25.0%
!! TGTGATTCGTTATTTGATTT+CGG - Chr5:18027028-18027047 MsG0580025397.01.T01:CDS 25.0%
!! TTCAAGTTAGAATCAATTAC+GGG - Chr5:18027346-18027365 MsG0580025397.01.T01:intron 25.0%
!! TTGAATTTGAGATTGCTAAT+CGG - Chr5:18027116-18027135 MsG0580025397.01.T01:intron 25.0%
!! TTGATTTAGAATACCGAAAA+TGG + Chr5:18026871-18026890 None:intergenic 25.0%
!! TTTGATTGTTGGTAGAAAAT+AGG - Chr5:18027466-18027485 MsG0580025397.01.T01:CDS 25.0%
!!! GTACAAATTGGTAGTTTTTT+TGG - Chr5:18028448-18028467 MsG0580025397.01.T01:intron 25.0%
!!! TTCTGTTTTGTTTTGATTGT+TGG - Chr5:18027455-18027474 MsG0580025397.01.T01:CDS 25.0%
!!! TTGTTGTTGTTTTGATTGTT+GGG - Chr5:18027732-18027751 MsG0580025397.01.T01:intron 25.0%
AAAATAGGCTTAGATGGTTT+GGG - Chr5:18027481-18027500 MsG0580025397.01.T01:CDS 30.0%
AACCATTAGAAAGGATTTAG+AGG - Chr5:18027608-18027627 MsG0580025397.01.T01:intron 30.0%
AACCTCTAAATCCTTTCTAA+TGG + Chr5:18027613-18027632 None:intergenic 30.0%
AAGCAAAAACTTGTATATGC+AGG + Chr5:18028932-18028951 None:intergenic 30.0%
AATATGATATAAATCCCCGA+TGG + Chr5:18029521-18029540 None:intergenic 30.0%
ACTCTTTCAAATGCATATGT+AGG - Chr5:18028997-18029016 MsG0580025397.01.T01:intron 30.0%
AGTTGTCTGTAATTATCTCT+AGG - Chr5:18028143-18028162 MsG0580025397.01.T01:CDS 30.0%
ATAATATACACATTGGTCCT+AGG + Chr5:18028286-18028305 None:intergenic 30.0%
ATTGTGGAATTCTTACAGAA+TGG - Chr5:18028535-18028554 MsG0580025397.01.T01:intron 30.0%
CAATATCATGGTGAATGATT+GGG + Chr5:18029208-18029227 None:intergenic 30.0%
CCTGCAAATGATATCAAAAT+AGG + Chr5:18029652-18029671 None:intergenic 30.0%
GAAATGTAGGTTTGTGAATT+AGG - Chr5:18027182-18027201 MsG0580025397.01.T01:intron 30.0%
GGAAGAAAAGATAATTAGAC+AGG + Chr5:18029631-18029650 None:intergenic 30.0%
GTTCTGTCATAAACCAAATT+TGG + Chr5:18027648-18027667 None:intergenic 30.0%
TAATATACACATTGGTCCTA+GGG + Chr5:18028285-18028304 None:intergenic 30.0%
TGATTTAAAAAGGAGAGAGA+AGG - Chr5:18028794-18028813 MsG0580025397.01.T01:intron 30.0%
TTGAGTGTAAAAATCACGTT+TGG - Chr5:18027300-18027319 MsG0580025397.01.T01:intron 30.0%
! AAACTCACTGACTAATCAAA+GGG - Chr5:18028038-18028057 MsG0580025397.01.T01:intron 30.0%
! AACATCTACTCTAGAAATCT+TGG - Chr5:18029566-18029585 MsG0580025397.01.T01:intron 30.0%
! ACTTCTTAACAGCATTTTCT+TGG - Chr5:18029356-18029375 MsG0580025397.01.T01:intron 30.0%
! AGAAGAAGTCAATCCATTTT+CGG - Chr5:18026855-18026874 MsG0580025397.01.T01:CDS 30.0%
! GAATTTAGTTTCGATGTTTG+TGG - Chr5:18027143-18027162 MsG0580025397.01.T01:intron 30.0%
! GTAATGTCATTTCTTATGCA+GGG - Chr5:18028658-18028677 MsG0580025397.01.T01:intron 30.0%
! GTTTCTCTAATAGTTTTCCT+AGG + Chr5:18027591-18027610 None:intergenic 30.0%
! TAAACTCACTGACTAATCAA+AGG - Chr5:18028037-18028056 MsG0580025397.01.T01:intron 30.0%
! TAATGAGTTGGATCCAAATT+TGG - Chr5:18027632-18027651 MsG0580025397.01.T01:intron 30.0%
! TACTGTTTGATTTCACAGTA+GGG + Chr5:18027418-18027437 None:intergenic 30.0%
! TGTAATGTCATTTCTTATGC+AGG - Chr5:18028657-18028676 MsG0580025397.01.T01:intron 30.0%
!! ATTATAGCTATTGGCTCTAA+TGG - Chr5:18029449-18029468 MsG0580025397.01.T01:intron 30.0%
!!! CCTATTTTGATATCATTTGC+AGG - Chr5:18029649-18029668 MsG0580025397.01.T01:intron 30.0%
!!! GCGAATATTTTGACATTCTT+AGG - Chr5:18027875-18027894 MsG0580025397.01.T01:intron 30.0%
!!! GTTGTTGTTGTTTTGATTGT+TGG - Chr5:18027731-18027750 MsG0580025397.01.T01:intron 30.0%
!!! GTTTTGAATTTTTTAGCTGC+TGG - Chr5:18028820-18028839 MsG0580025397.01.T01:intron 30.0%
AAGAATTCTGCACAACTTTG+AGG - Chr5:18027964-18027983 MsG0580025397.01.T01:CDS 35.0%
AATATACACATTGGTCCTAG+GGG + Chr5:18028284-18028303 None:intergenic 35.0%
ACAACACGAAACTAGAGAAT+TGG + Chr5:18029768-18029787 None:intergenic 35.0%
ACATTGTAAACTTCACAGTG+AGG + Chr5:18029800-18029819 None:intergenic 35.0%
AGAGAAGATTCTGTTGCTAA+AGG - Chr5:18029031-18029050 MsG0580025397.01.T01:intron 35.0%
AGAGTAGATGTTTGTGTTAG+AGG + Chr5:18029558-18029577 None:intergenic 35.0%
AGCCAATAGCTATAATCACA+GGG + Chr5:18029445-18029464 None:intergenic 35.0%
AGGCCAATTCTTATCATCAA+CGG + Chr5:18029177-18029196 None:intergenic 35.0%
AGTCAAGTTAAAAGTGGTAG+AGG - Chr5:18027561-18027580 MsG0580025397.01.T01:intron 35.0%
AGTCAGTGAGTTTATAGTAC+AGG + Chr5:18028031-18028050 None:intergenic 35.0%
ATAAGTTTAACACCCAGAAG+AGG + Chr5:18028242-18028261 None:intergenic 35.0%
ATGTCGTTAAACCAAAGCAA+AGG - Chr5:18029403-18029422 MsG0580025397.01.T01:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - Chr5:18027480-18027499 MsG0580025397.01.T01:CDS 35.0%
GAATCTCATTGGCAATATCA+TGG + Chr5:18029220-18029239 None:intergenic 35.0%
GAATTCTTACAGAATGGTGT+TGG - Chr5:18028541-18028560 MsG0580025397.01.T01:intron 35.0%
GAGTAGATGTTTGTGTTAGA+GGG + Chr5:18029557-18029576 None:intergenic 35.0%
GCAATATCATGGTGAATGAT+TGG + Chr5:18029209-18029228 None:intergenic 35.0%
GGATTTAGAGGTTAATGAGT+TGG - Chr5:18027620-18027639 MsG0580025397.01.T01:intron 35.0%
GTACCAAAGCACATATGAAA+GGG + Chr5:18029875-18029894 None:intergenic 35.0%
GTCAAAATCCTCAAAAGCAA+AGG + Chr5:18028979-18028998 None:intergenic 35.0%
GTCAGTGAGTTTATAGTACA+GGG + Chr5:18028030-18028049 None:intergenic 35.0%
TACCAAAGCACATATGAAAG+GGG + Chr5:18029874-18029893 None:intergenic 35.0%
TACTGCTATTATTGCTAGGT+AGG + Chr5:18028069-18028088 None:intergenic 35.0%
TCCAACATTCTCTAGATTTG+CGG - Chr5:18026977-18026996 MsG0580025397.01.T01:intron 35.0%
TCTTCTTCTTCGAAAGGATT+GGG + Chr5:18026841-18026860 None:intergenic 35.0%
TGAAAAGACCACTGAAAATC+TGG + Chr5:18029079-18029098 None:intergenic 35.0%
TGAATGATTGGGAAAAATGG+AGG + Chr5:18029197-18029216 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - Chr5:18027475-18027494 MsG0580025397.01.T01:CDS 35.0%
TGGTGAATGATTGGGAAAAA+TGG + Chr5:18029200-18029219 None:intergenic 35.0%
TGTACCAAAGCACATATGAA+AGG + Chr5:18029876-18029895 None:intergenic 35.0%
TGTCGTTAAACCAAAGCAAA+GGG - Chr5:18029404-18029423 MsG0580025397.01.T01:intron 35.0%
TTAAAAAGGAGAGAGAAGGT+TGG - Chr5:18028798-18028817 MsG0580025397.01.T01:intron 35.0%
TTCAAAATATGCTTACCAGC+TGG - Chr5:18029146-18029165 MsG0580025397.01.T01:intron 35.0%
TTCCCTGTGATTATAGCTAT+TGG - Chr5:18029440-18029459 MsG0580025397.01.T01:intron 35.0%
TTCTTCTTCTTCGAAAGGAT+TGG + Chr5:18026842-18026861 None:intergenic 35.0%
TTGACTTCTTCTTCTTCGAA+AGG + Chr5:18026847-18026866 None:intergenic 35.0%
TTGGATCTGAATGAGAGAAA+AGG + Chr5:18026962-18026981 None:intergenic 35.0%
TTTCATATGTGCTTTGGTAC+AGG - Chr5:18029875-18029894 MsG0580025397.01.T01:CDS 35.0%
! AATTCTCTAGTTTCGTGTTG+TGG - Chr5:18029767-18029786 MsG0580025397.01.T01:intron 35.0%
! AGCATTTTCTTGGTTGTTCT+TGG - Chr5:18029366-18029385 MsG0580025397.01.T01:intron 35.0%
! CTACTGTTTGATTTCACAGT+AGG + Chr5:18027419-18027438 None:intergenic 35.0%
! TTTAGTTTCGATGTTTGTGG+AGG - Chr5:18027146-18027165 MsG0580025397.01.T01:intron 35.0%
! TTTGCTTTGGTTTAACGACA+TGG + Chr5:18029404-18029423 None:intergenic 35.0%
!! AAACACAGTGTAGAGGTATT+GGG - Chr5:18028168-18028187 MsG0580025397.01.T01:CDS 35.0%
!!! AATTTTTTAGCTGCTGGTGT+TGG - Chr5:18028826-18028845 MsG0580025397.01.T01:intron 35.0%
!!! GGTAGTTTTTTTGGAAACCT+TGG - Chr5:18028457-18028476 MsG0580025397.01.T01:intron 35.0%
!!! TAGCTCTTGACCTTTTTTCT+TGG + Chr5:18028760-18028779 None:intergenic 35.0%
AAATTGTAGACGCCTCTTCT+GGG - Chr5:18028227-18028246 MsG0580025397.01.T01:intron 40.0%
AATATTCGGCCTTTGCTAGT+TGG - Chr5:18029261-18029280 MsG0580025397.01.T01:intron 40.0%
ACCGCAAATCTAGAGAATGT+TGG + Chr5:18026981-18027000 None:intergenic 40.0%
ACTTGGATCTGGAGAAATGT+AGG - Chr5:18027169-18027188 MsG0580025397.01.T01:intron 40.0%
AGCATGAACTGGAATCTCAT+TGG + Chr5:18029231-18029250 None:intergenic 40.0%
CGTAAGAAGAGTCGATCAAA+CGG - Chr5:18027533-18027552 MsG0580025397.01.T01:CDS 40.0%
CTGTGAAGTTTACAATGTGC+AGG - Chr5:18029802-18029821 MsG0580025397.01.T01:intron 40.0%
GAGCCAATAGCTATAATCAC+AGG + Chr5:18029446-18029465 None:intergenic 40.0%
GAGGAGAGTCAAGTTAAAAG+TGG - Chr5:18027555-18027574 MsG0580025397.01.T01:CDS 40.0%
GGATACCAGTTGACTAATAG+TGG + Chr5:18028958-18028977 None:intergenic 40.0%
GGCCAATTCTTATCATCAAC+GGG + Chr5:18029176-18029195 None:intergenic 40.0%
TAGTTGCAGTGATTGTCTGT+TGG - Chr5:18029698-18029717 MsG0580025397.01.T01:intron 40.0%
TGCTCAGAGACTGCAATATT+CGG - Chr5:18029247-18029266 MsG0580025397.01.T01:intron 40.0%
TTACCTCATAGCACGATAGA+GGG + Chr5:18029902-18029921 None:intergenic 40.0%
TTCCCCTTTCATATGTGCTT+TGG - Chr5:18029869-18029888 MsG0580025397.01.T01:CDS 40.0%
TTCTGCCACTATTAGTCAAC+TGG - Chr5:18028950-18028969 MsG0580025397.01.T01:intron 40.0%
! AGCAGATGAAGTTTTTCTCG+TGG - Chr5:18028117-18028136 MsG0580025397.01.T01:CDS 40.0%
! CAAACACAGTGTAGAGGTAT+TGG - Chr5:18028167-18028186 MsG0580025397.01.T01:CDS 40.0%
! CGTGGGAAGCTGATTTAAAA+AGG - Chr5:18028784-18028803 MsG0580025397.01.T01:intron 40.0%
! TGTTTGATTTCACAGTAGGG+AGG + Chr5:18027415-18027434 None:intergenic 40.0%
! TTGATCGACTCTTCTTACGA+CGG + Chr5:18027532-18027551 None:intergenic 40.0%
! TTTGAGATTGCTAATCGGTG+TGG - Chr5:18027121-18027140 MsG0580025397.01.T01:intron 40.0%
!! ACTGGTATCCTTTGCTTTTG+AGG - Chr5:18028968-18028987 MsG0580025397.01.T01:intron 40.0%
!! ATAGCTATTGGCTCTAATGG+TGG - Chr5:18029452-18029471 MsG0580025397.01.T01:intron 40.0%
!! CAAAAAGGCATCAAATGCCA+AGG + Chr5:18028477-18028496 None:intergenic 40.0%
!! TAGCTATTGGCTCTAATGGT+GGG - Chr5:18029453-18029472 MsG0580025397.01.T01:intron 40.0%
!! TGCCCGTTGATGATAAGAAT+TGG - Chr5:18029171-18029190 MsG0580025397.01.T01:intron 40.0%
AAAATCACGTGTTCCACCGT+TGG - Chr5:18028567-18028586 MsG0580025397.01.T01:intron 45.0%
AAAGTGGTAGAGGAAGACCT+AGG - Chr5:18027571-18027590 MsG0580025397.01.T01:intron 45.0%
AACATGCATGCCCTTTGCTT+TGG + Chr5:18029417-18029436 None:intergenic 45.0%
AAGAAGAGTCGATCAAACGG+AGG - Chr5:18027536-18027555 MsG0580025397.01.T01:CDS 45.0%
AGACCACTGAAAATCTGGCA+TGG + Chr5:18029074-18029093 None:intergenic 45.0%
ATACCTTCTGTGAAACCCCT+AGG - Chr5:18028266-18028285 MsG0580025397.01.T01:intron 45.0%
ATTGTCTGTTGGATCAGAGG+CGG - Chr5:18029709-18029728 MsG0580025397.01.T01:intron 45.0%
CAAACAGTAGCGAAGTAGAG+TGG - Chr5:18027429-18027448 MsG0580025397.01.T01:intron 45.0%
CAGTGATTTATGCGCTGCTT+GGG - Chr5:18029845-18029864 MsG0580025397.01.T01:intron 45.0%
CATACCCAACCAACTAGCAA+AGG + Chr5:18029273-18029292 None:intergenic 45.0%
CTAGGACAAACACAGTGTAG+AGG - Chr5:18028161-18028180 MsG0580025397.01.T01:CDS 45.0%
CTAGTTTCGTGTTGTGGCTT+GGG - Chr5:18029773-18029792 MsG0580025397.01.T01:intron 45.0%
CTTCGAAAGGATTGGGATCA+TGG + Chr5:18026834-18026853 None:intergenic 45.0%
CTTTGCTAGTTGGTTGGGTA+TGG - Chr5:18029271-18029290 MsG0580025397.01.T01:intron 45.0%
GAAATTGTAGACGCCTCTTC+TGG - Chr5:18028226-18028245 MsG0580025397.01.T01:intron 45.0%
GTGATTGTCTGTTGGATCAG+AGG - Chr5:18029706-18029725 MsG0580025397.01.T01:intron 45.0%
TACCTCATAGCACGATAGAG+GGG + Chr5:18029901-18029920 None:intergenic 45.0%
TAGGGGGACTCCAAGAAAAA+AGG - Chr5:18028747-18028766 MsG0580025397.01.T01:intron 45.0%
TCTTAGGCACAGAGAGGTTT+AGG - Chr5:18027891-18027910 MsG0580025397.01.T01:intron 45.0%
TGACATTCTTAGGCACAGAG+AGG - Chr5:18027885-18027904 MsG0580025397.01.T01:intron 45.0%
TGCGACAGTTGACATTCCTT+TGG - Chr5:18028624-18028643 MsG0580025397.01.T01:intron 45.0%
TGTCTTTGACCAAAACCAGC+TGG + Chr5:18028601-18028620 None:intergenic 45.0%
TTCGATGTTTGTGGAGGACT+TGG - Chr5:18027152-18027171 MsG0580025397.01.T01:intron 45.0%
TTGACCAAAACCAGCTGGTT+CGG + Chr5:18028596-18028615 None:intergenic 45.0%
TTTGTGTTCACGTAACGCAG+TGG - Chr5:18027216-18027235 MsG0580025397.01.T01:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr5:18027701-18027720 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr5:18027702-18027721 None:intergenic 45.0%
! TCTAGTTTCGTGTTGTGGCT+TGG - Chr5:18029772-18029791 MsG0580025397.01.T01:intron 45.0%
!!! TATCTATTTATTAATTATTT+TGG - Chr5:18029308-18029327 MsG0580025397.01.T01:intron 5.0%
CACTGAAAATCTGGCATGGC+GGG + Chr5:18029070-18029089 None:intergenic 50.0%
CCACTGAAAATCTGGCATGG+CGG + Chr5:18029071-18029090 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - Chr5:18027700-18027719 MsG0580025397.01.T01:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + Chr5:18027697-18027716 None:intergenic 50.0%
CTTGGCAAGACTCGTTCCAT+CGG - Chr5:18029502-18029521 MsG0580025397.01.T01:intron 50.0%
GCAGCGCATAAATCACTGCA+AGG + Chr5:18029843-18029862 None:intergenic 50.0%
GCAGTGATTTATGCGCTGCT+TGG - Chr5:18029844-18029863 MsG0580025397.01.T01:intron 50.0%
GTTTGTGGAGGACTTGGATC+TGG - Chr5:18027158-18027177 MsG0580025397.01.T01:intron 50.0%
TCGGCCTTTGCTAGTTGGTT+GGG - Chr5:18029266-18029285 MsG0580025397.01.T01:intron 50.0%
TGCAGTCTCTGAGCATGAAC+TGG + Chr5:18029242-18029261 None:intergenic 50.0%
TTCGGCCTTTGCTAGTTGGT+TGG - Chr5:18029265-18029284 MsG0580025397.01.T01:intron 50.0%
TTGGCAAGACTCGTTCCATC+GGG - Chr5:18029503-18029522 MsG0580025397.01.T01:intron 50.0%
TTGTCTGTTGGATCAGAGGC+GGG - Chr5:18029710-18029729 MsG0580025397.01.T01:intron 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + Chr5:18027703-18027722 None:intergenic 50.0%
!! GGCTCTAATGGTGGGTGAAA+TGG - Chr5:18029461-18029480 MsG0580025397.01.T01:intron 50.0%
AAGGTCAAGAGCTAGCAGCG+TGG - Chr5:18028766-18028785 MsG0580025397.01.T01:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + Chr5:18027689-18027708 None:intergenic 55.0%
AGGTCAAGAGCTAGCAGCGT+GGG - Chr5:18028767-18028786 MsG0580025397.01.T01:intron 55.0%
ATGTAGCCGACCCCACTTAG+TGG - Chr5:18027688-18027707 MsG0580025397.01.T01:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - Chr5:18027695-18027714 MsG0580025397.01.T01:intron 55.0%
GGTCCTAGGGGTTTCACAGA+AGG + Chr5:18028272-18028291 None:intergenic 55.0%
TGGCAAGACTCGTTCCATCG+GGG - Chr5:18029504-18029523 MsG0580025397.01.T01:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - Chr5:18027689-18027708 MsG0580025397.01.T01:intron 55.0%
TGTCTGTTGGATCAGAGGCG+GGG - Chr5:18029711-18029730 MsG0580025397.01.T01:intron 55.0%
! CCGCCATGCCAGATTTTCAG+TGG - Chr5:18029068-18029087 MsG0580025397.01.T01:intron 55.0%
!! GCATCCGAACCAGCTGGTTT+TGG - Chr5:18028589-18028608 MsG0580025397.01.T01:intron 55.0%
GGCCCCTCTATCGTGCTATG+AGG - Chr5:18029896-18029915 MsG0580025397.01.T01:CDS 60.0%
GTCTGTTGGATCAGAGGCGG+GGG - Chr5:18029712-18029731 MsG0580025397.01.T01:intron 60.0%
TCATCAACGGGCACACCAGC+TGG + Chr5:18029164-18029183 None:intergenic 60.0%
!! CCAGCTGGTTCGGATGCCAA+CGG + Chr5:18028586-18028605 None:intergenic 60.0%
CCGTTGGCATCCGAACCAGC+TGG - Chr5:18028583-18028602 MsG0580025397.01.T01:intron 65.0%
!! GCTGGTTCGGATGCCAACGG+TGG + Chr5:18028583-18028602 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 18026820 18029921 18026820 ID=MsG0580025397.01;Name=MsG0580025397.01
Chr5 mRNA 18026820 18029921 18026820 ID=MsG0580025397.01.T01;Parent=MsG0580025397.01;Name=MsG0580025397.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|6|0|171
Chr5 exon 18029865 18029921 18029865 ID=MsG0580025397.01.T01:exon:4430;Parent=MsG0580025397.01.T01
Chr5 exon 18028084 18028188 18028084 ID=MsG0580025397.01.T01:exon:4429;Parent=MsG0580025397.01.T01
Chr5 exon 18027922 18027991 18027922 ID=MsG0580025397.01.T01:exon:4428;Parent=MsG0580025397.01.T01
Chr5 exon 18027454 18027576 18027454 ID=MsG0580025397.01.T01:exon:4427;Parent=MsG0580025397.01.T01
Chr5 exon 18027008 18027070 18027008 ID=MsG0580025397.01.T01:exon:4426;Parent=MsG0580025397.01.T01
Chr5 exon 18026820 18026917 18026820 ID=MsG0580025397.01.T01:exon:4425;Parent=MsG0580025397.01.T01
Chr5 CDS 18029865 18029921 18029865 ID=MsG0580025397.01.T01:cds;Parent=MsG0580025397.01.T01
Chr5 CDS 18028084 18028188 18028084 ID=MsG0580025397.01.T01:cds;Parent=MsG0580025397.01.T01
Chr5 CDS 18027922 18027991 18027922 ID=MsG0580025397.01.T01:cds;Parent=MsG0580025397.01.T01
Chr5 CDS 18027454 18027576 18027454 ID=MsG0580025397.01.T01:cds;Parent=MsG0580025397.01.T01
Chr5 CDS 18027008 18027070 18027008 ID=MsG0580025397.01.T01:cds;Parent=MsG0580025397.01.T01
Chr5 CDS 18026820 18026917 18026820 ID=MsG0580025397.01.T01:cds;Parent=MsG0580025397.01.T01
Gene Sequence

>MsG0580025397.01.T01

ATGAATCGCAACCATGATCCCAATCCTTTCGAAGAAGAAGAAGTCAATCCATTTTCGAATGGTGTTGGATCAAAATCACGTGTTCCACCGTTGGCATCCGAACCAGCTGGTTTTGGTCAAAGACATGATGCGACAGTTGACATTCCTTTGGATACTTCAAATGGGGACTCCAAGAAAAAAGGTCAAGAGCTAGCAGCGTGGGAAGCTGATTTAAAAAGGAGAGAGAAGGTTGCTGGTGTGCCCGTTGATGATAAGAATTGGCCTCCATTTTTCCCAATCATTCACCATGATATTGCCAATGAGATTCCAGTTCATGCTCAGAGACTGCAATATTCGGCCTTTGCTAGTTGGTTGGGAATCGTTCTCTGTTTAGTTTTTAATGTAGTTGCAGTGATTGTCTGTTGGATCAGAGGCGGGGGTGTTAAAATATTTTTCCTTGCAGTGATTTATGCGCTGCTTGGGATTCCCCTTTCATATGTGCTTTGGTACAGGCCCCTCTATCGTGCTATGAGGTAA
Protein sequence

>MsG0580025397.01.T01

MNRNHDPNPFEEEEVNPFSNGVGSKSRVPPLASEPAGFGQRHDATVDIPLDTSNGDSKKKGQELAAWEADLKRREKVAGVPVDDKNWPPFFPIIHHDIANEIPVHAQRLQYSAFASWLGIVLCLVFNVVAVIVCWIRGGGVKIFFLAVIYALLGIPLSYVLWYRPLYRAMR*