AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026053.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026053.01.T01 MTR_5g038590 67.895 190 31 2 1 160 1 190 1.07e-75 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 66 sgRNAs with CRISPR-Local

Find 430 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGTTCTTACTGAGAATT+TGG 0.167211 5:+29881512 MsG0580026053.01.T01:CDS
CAAAGTTCTTACTGAGAATT+TGG 0.167211 5:+29881564 MsG0580026053.01.T01:CDS
GATGACCAACTCGAAAATTT+TGG 0.194813 5:-29875125 None:intergenic
TTCGAGTTGGTCATCGTAAA+TGG 0.222053 5:+29875133 MsG0580026053.01.T01:CDS
GATACTCCTACACAGGTTTC+TGG 0.225437 5:+29876928 MsG0580026053.01.T01:intron
TTGAAAGGATCGATCAATTC+TGG 0.265574 5:+29876063 MsG0580026053.01.T01:CDS
GAATCGGCATCTTCACCTTT+AGG 0.294816 5:-29876093 None:intergenic
TTTCATGTGGTAATTTGAAT+TGG 0.315971 5:+29881648 MsG0580026053.01.T01:three_prime_UTR
CTCAGCCTGATCCACGGACT+TGG 0.365087 5:-29875780 None:intergenic
AATTTGGCTGCGGAGGAGTA+TGG 0.377293 5:+29881528 MsG0580026053.01.T01:CDS
ATCAAGTCTATTCCATGTAC+AGG 0.423865 5:-29880854 None:intergenic
TGCTGATTCCGCTGATGCTC+AGG 0.426663 5:+29880486 MsG0580026053.01.T01:CDS
GCGCTGCAGTTGCTGTTGAA+TGG 0.428603 5:+29875752 MsG0580026053.01.T01:intron
ATCGCCCAAGTCCGTGGATC+AGG 0.437026 5:+29875775 MsG0580026053.01.T01:CDS
TTGGTCATCGTAAATGGAAT+AGG 0.450217 5:+29875139 MsG0580026053.01.T01:CDS
TGCTGATTCCACTGATGCTC+AGG 0.460947 5:+29875820 MsG0580026053.01.T01:CDS
GTCGCCATCCTTTACTGTTA+CGG 0.466106 5:+29875240 MsG0580026053.01.T01:CDS
CAAGTCCGTGGATCAGGCTG+AGG 0.474451 5:+29875781 MsG0580026053.01.T01:CDS
TACTGAGAATTTGGCTGAGG+AGG 0.474488 5:+29881573 MsG0580026053.01.T01:CDS
CAATGTTACCCGCCACCTAC+AGG 0.475644 5:+29875272 MsG0580026053.01.T01:CDS
GAAGCTGAAAGAGAATATAC+TGG 0.476368 5:+29881478 MsG0580026053.01.T01:intron
TGCCGATTCCACTGATGCTC+AGG 0.477881 5:+29876107 MsG0580026053.01.T01:CDS
TGAAAGGATCGATCAATTCT+GGG 0.483186 5:+29876064 MsG0580026053.01.T01:CDS
GTTATTAAGCACCCTGTACA+TGG 0.484942 5:+29880842 MsG0580026053.01.T01:CDS
ATTTCGAAGTGCTATTGCTA+TGG 0.486080 5:+29876951 MsG0580026053.01.T01:CDS
GTAAGAACTTTGACCTCCTC+GGG 0.486682 5:-29881553 None:intergenic
TACCTGAGCATCAGTGGAAT+CGG 0.498451 5:-29876109 None:intergenic
TGTCGCGCCATGACGATAAG+TGG 0.509557 5:+29875100 MsG0580026053.01.T01:exon
TTTCGAAGTGCTATTGCTAT+GGG 0.511590 5:+29876952 MsG0580026053.01.T01:CDS
TCAGCCTGATCCACGGACTT+GGG 0.520558 5:-29875779 None:intergenic
TCGTTGTAGTTGCTGTTGAA+AGG 0.524604 5:+29876048 MsG0580026053.01.T01:intron
CTGTAGGTGGCGGGTAACAT+TGG 0.525660 5:-29875271 None:intergenic
TCTTACTGAGAATTTGGCTG+AGG 0.529210 5:+29881570 MsG0580026053.01.T01:CDS
TACTGAGAATTTGGCTGCGG+AGG 0.529952 5:+29881521 MsG0580026053.01.T01:CDS
AGTAAGAACTTTGACCTCCT+CGG 0.533885 5:-29881554 None:intergenic
TTTGGCTCCACTTATCGTCA+TGG 0.540653 5:-29875107 None:intergenic
AAATCTTAAATTCTTTCATG+TGG 0.540792 5:+29881635 MsG0580026053.01.T01:three_prime_UTR
GAGAATATACTGGCCGGTGG+AGG 0.547874 5:+29881488 MsG0580026053.01.T01:CDS
GTAAGAACTTTGACCTCCAC+CGG 0.553842 5:-29881501 None:intergenic
ATTTGTTACCTGAGCATCAG+TGG 0.553896 5:-29876115 None:intergenic
CTATGTAACAACAGTTATGC+AGG 0.556684 5:+29881672 MsG0580026053.01.T01:three_prime_UTR
AATTCTGGGGATCAACCTAA+AGG 0.566615 5:+29876078 MsG0580026053.01.T01:CDS
ATTTGTTACCTGAGCATCAG+TGG 0.569263 5:-29875828 None:intergenic
AGAATGTGCCGTAACAGTAA+AGG 0.572863 5:-29875248 None:intergenic
GAATGGATCGCCCAAGTCCG+TGG 0.574921 5:+29875769 MsG0580026053.01.T01:CDS
CACATGTACCTGTAGGTGGC+GGG 0.575850 5:-29875280 None:intergenic
AAGTCCGTGGATCAGGCTGA+GGG 0.580724 5:+29875782 MsG0580026053.01.T01:CDS
ACACATGTACCTGTAGGTGG+CGG 0.584747 5:-29875281 None:intergenic
TCTTACTGAGAATTTGGCTG+CGG 0.586550 5:+29881518 MsG0580026053.01.T01:CDS
CAATACAAATCATTCAAGAT+CGG 0.599335 5:+29880820 MsG0580026053.01.T01:CDS
AGCTCGACTATGTCCTCCAC+CGG 0.602146 5:-29880458 None:intergenic
ACCACCCTCAGCCTGATCCA+CGG 0.604867 5:-29875786 None:intergenic
CTGAAAGAGAATATACTGGC+CGG 0.606677 5:+29881482 MsG0580026053.01.T01:CDS
GCGGAGGAGTATGGAGCCCG+AGG 0.618172 5:+29881537 MsG0580026053.01.T01:CDS
AGAAGACTACGAGCCGGTGG+AGG 0.626897 5:+29880445 MsG0580026053.01.T01:CDS
GTTGGTTACCTGAGCATCAG+CGG 0.636301 5:-29880494 None:intergenic
TGTTGTATATATAATTGAAG+TGG 0.639426 5:+29881720 MsG0580026053.01.T01:three_prime_UTR
TCCGTGGATCAGGCTGAGGG+TGG 0.641801 5:+29875785 MsG0580026053.01.T01:CDS
TCAAGTCTATTCCATGTACA+GGG 0.647281 5:-29880853 None:intergenic
GAGGAGTATGGAGCCCGAGG+AGG 0.649196 5:+29881540 MsG0580026053.01.T01:CDS
GAAAGAAGACTACGAGCCGG+TGG 0.658227 5:+29880442 MsG0580026053.01.T01:CDS
AAAGAGAATATACTGGCCGG+TGG 0.661701 5:+29881485 MsG0580026053.01.T01:CDS
GCTGAAAGAAGACTACGAGC+CGG 0.663813 5:+29880439 MsG0580026053.01.T01:CDS
TGTGCCGTAACAGTAAAGGA+TGG 0.670732 5:-29875244 None:intergenic
CATACACATGTACCTGTAGG+TGG 0.678311 5:-29875284 None:intergenic
GAAAGGATCGATCAATTCTG+GGG 0.687692 5:+29876065 MsG0580026053.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAAATAAATTATACA+AGG - Chr5:29880006-29880025 None:intergenic 10.0%
!!! ATACATATTATTTTAGTAAA+AGG - Chr5:29878004-29878023 None:intergenic 10.0%
!!! CTATTTTCAAATTTTTAATA+GGG - Chr5:29877798-29877817 None:intergenic 10.0%
!!! GATTTTACTTTTTTAAATTT+GGG + Chr5:29875432-29875451 MsG0580026053.01.T01:intron 10.0%
!!! TACATATTATTTTAGTAAAA+GGG - Chr5:29878003-29878022 None:intergenic 10.0%
!! AAAATGTAATGTACTAATTT+AGG - Chr5:29875971-29875990 None:intergenic 15.0%
!! AATTGTAAATTGTAATTAAC+TGG + Chr5:29877581-29877600 MsG0580026053.01.T01:intron 15.0%
!! ACATAAAATAACACAATTTA+TGG - Chr5:29881415-29881434 None:intergenic 15.0%
!! ATAAAATAACACAATTTATG+GGG - Chr5:29881413-29881432 None:intergenic 15.0%
!! ATGAATATGCAAATTATATT+TGG + Chr5:29878239-29878258 MsG0580026053.01.T01:intron 15.0%
!! ATTACAATTTATAAACATGA+TGG + Chr5:29876873-29876892 MsG0580026053.01.T01:intron 15.0%
!! ATTGAAACAAAATATATCAA+AGG - Chr5:29878934-29878953 None:intergenic 15.0%
!! CATAAAATAACACAATTTAT+GGG - Chr5:29881414-29881433 None:intergenic 15.0%
!! CATGTTTATAAATTGTAATA+TGG - Chr5:29876872-29876891 None:intergenic 15.0%
!! TGATCATAACATAAAAATAT+AGG - Chr5:29881458-29881477 None:intergenic 15.0%
!! TTAAAGAAAGAATAATACTT+TGG - Chr5:29876492-29876511 None:intergenic 15.0%
!! TTACAATTTATAAACATGAT+GGG + Chr5:29876874-29876893 MsG0580026053.01.T01:intron 15.0%
!!! AAAGAATATACTGATTTTAT+AGG + Chr5:29880785-29880804 MsG0580026053.01.T01:intron 15.0%
!!! ATTAAATCAGTATTTTCTTT+AGG - Chr5:29878068-29878087 None:intergenic 15.0%
!!! CATACAAATTATATTTTGTT+TGG + Chr5:29880253-29880272 MsG0580026053.01.T01:intron 15.0%
!!! GCTATTTTCAAATTTTTAAT+AGG - Chr5:29877799-29877818 None:intergenic 15.0%
!!! GGATTTTACTTTTTTAAATT+TGG + Chr5:29875431-29875450 MsG0580026053.01.T01:intron 15.0%
!!! TATTATTTTACAAGTTACTT+GGG + Chr5:29876771-29876790 MsG0580026053.01.T01:intron 15.0%
!!! TCATTTTCAATAGAATATTT+AGG + Chr5:29877700-29877719 MsG0580026053.01.T01:intron 15.0%
!!! TTTAAACTTTGTAATTTGTA+AGG + Chr5:29876643-29876662 MsG0580026053.01.T01:intron 15.0%
!!! TTTACAGAACTTTTTTTTTT+TGG - Chr5:29881257-29881276 None:intergenic 15.0%
!!! TTTGTTATTATCAATTGAAT+GGG - Chr5:29878965-29878984 None:intergenic 15.0%
!! AAATCTTAAATTCTTTCATG+TGG + Chr5:29881635-29881654 MsG0580026053.01.T01:three_prime_UTR 20.0%
!! AAATTATCCTAATCAACTAT+TGG - Chr5:29876526-29876545 None:intergenic 20.0%
!! AAGTATTATAGAATGTTAAC+AGG + Chr5:29877156-29877175 MsG0580026053.01.T01:intron 20.0%
!! AATAGTTGATTAGGATAATT+TGG + Chr5:29876525-29876544 MsG0580026053.01.T01:intron 20.0%
!! AATGAAGTAAACAAAAAAGT+TGG - Chr5:29879975-29879994 None:intergenic 20.0%
!! ACAGAATTTATATTGAAAAC+AGG - Chr5:29881223-29881242 None:intergenic 20.0%
!! ACTAAAATAATATGTATGCA+CGG + Chr5:29878007-29878026 MsG0580026053.01.T01:intron 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - Chr5:29876428-29876447 None:intergenic 20.0%
!! CATAAACAAGAAATTATTAC+TGG - Chr5:29878222-29878241 None:intergenic 20.0%
!! CTGAATATGCAAATTATATT+TGG + Chr5:29880962-29880981 MsG0580026053.01.T01:intron 20.0%
!! GTAACATAGTATTAATTGAA+GGG - Chr5:29876462-29876481 None:intergenic 20.0%
!! TAAAATAACACAATTTATGG+GGG - Chr5:29881412-29881431 None:intergenic 20.0%
!! TAATACCAATAGAATAGATA+CGG + Chr5:29879886-29879905 MsG0580026053.01.T01:intron 20.0%
!! TATATCAGTTAGTTATTAGT+TGG - Chr5:29877323-29877342 None:intergenic 20.0%
!! TATGCAAATTATATTTGGTT+TGG + Chr5:29878244-29878263 MsG0580026053.01.T01:intron 20.0%
!! TGTAACATAGTATTAATTGA+AGG - Chr5:29876463-29876482 None:intergenic 20.0%
!! TGTTGTATATATAATTGAAG+TGG + Chr5:29881720-29881739 MsG0580026053.01.T01:three_prime_UTR 20.0%
!!! AAAATACTGATTTAATAGTC+TGG + Chr5:29878072-29878091 MsG0580026053.01.T01:intron 20.0%
!!! ACATTTTACTTCTCAATTAT+AGG + Chr5:29875984-29876003 MsG0580026053.01.T01:intron 20.0%
!!! ATCACATCAATATTTTCTTT+AGG - Chr5:29880094-29880113 None:intergenic 20.0%
!!! CAAGTAACTTGTAAAATAAT+AGG - Chr5:29876772-29876791 None:intergenic 20.0%
!!! CTATTATTTTACAAGTTACT+TGG + Chr5:29876770-29876789 MsG0580026053.01.T01:intron 20.0%
!!! CTTTGTTATTATCAATTGAA+TGG - Chr5:29878966-29878985 None:intergenic 20.0%
!!! CTTTTTTAAATTTGGGTTAT+TGG + Chr5:29875439-29875458 MsG0580026053.01.T01:intron 20.0%
!!! GAATGTAACTATTATTGATT+CGG + Chr5:29880332-29880351 MsG0580026053.01.T01:intron 20.0%
!!! GTGTTTTGTTAGTAAAATTT+AGG + Chr5:29875410-29875429 MsG0580026053.01.T01:intron 20.0%
!!! GTTTAGTTTATTTTTAGTCA+GGG + Chr5:29881697-29881716 MsG0580026053.01.T01:three_prime_UTR 20.0%
! AAAATATTGATGTGATAGTC+CGG + Chr5:29880098-29880117 MsG0580026053.01.T01:intron 25.0%
! AAACAAACCAATAGTTGATT+AGG + Chr5:29876516-29876535 MsG0580026053.01.T01:intron 25.0%
! AAACAACAGATAATGAATGA+TGG - Chr5:29878271-29878290 None:intergenic 25.0%
! AAATCAGTATATTCTTTACG+AGG - Chr5:29880782-29880801 None:intergenic 25.0%
! AAGTACTATAGAATATGAAC+AGG + Chr5:29878435-29878454 MsG0580026053.01.T01:intron 25.0%
! AAGTACTTATACTATGATAC+AGG - Chr5:29877497-29877516 None:intergenic 25.0%
! AATTTGAGAGAAAATTGAGT+TGG - Chr5:29877731-29877750 None:intergenic 25.0%
! ACATATCATAGAACATCTTT+AGG + Chr5:29880133-29880152 MsG0580026053.01.T01:intron 25.0%
! AGCTTTCTGATCATAAAATA+TGG - Chr5:29880422-29880441 None:intergenic 25.0%
! AGTGATTAACTATCTAACTA+GGG - Chr5:29877641-29877660 None:intergenic 25.0%
! ATTATCTATGCTAAGATGAA+AGG + Chr5:29877468-29877487 MsG0580026053.01.T01:intron 25.0%
! ATTTGATATAACTCTGATTG+TGG - Chr5:29879597-29879616 None:intergenic 25.0%
! CAACTGTAACTAATTGATTA+TGG - Chr5:29877608-29877627 None:intergenic 25.0%
! CAATACAAATCATTCAAGAT+CGG + Chr5:29880820-29880839 MsG0580026053.01.T01:CDS 25.0%
! CAGCAACAACAAATTATTAT+TGG - Chr5:29880945-29880964 None:intergenic 25.0%
! CATAATCAATTAGTTACAGT+TGG + Chr5:29877606-29877625 MsG0580026053.01.T01:intron 25.0%
! CATATCATAGAACATCTTTA+GGG + Chr5:29880134-29880153 MsG0580026053.01.T01:intron 25.0%
! CTAACCAATGTTTAAAAAAC+CGG + Chr5:29878678-29878697 MsG0580026053.01.T01:intron 25.0%
! GATGGTTAACTATCTAAATA+TGG - Chr5:29881336-29881355 None:intergenic 25.0%
! GCTTTCTGATCATAAAATAT+GGG - Chr5:29880421-29880440 None:intergenic 25.0%
! GTATCATAGTATAAGTACTT+GGG + Chr5:29877497-29877516 MsG0580026053.01.T01:intron 25.0%
! GTTAGTACTTAATAGTTAGT+TGG - Chr5:29878598-29878617 None:intergenic 25.0%
! TAAACTCGAATAGTAAACAT+CGG + Chr5:29875530-29875549 MsG0580026053.01.T01:intron 25.0%
! TACAAGGTAGAAAGAATAAA+TGG - Chr5:29876215-29876234 None:intergenic 25.0%
! TACATTCTTTAAGCTCATAA+AGG - Chr5:29880319-29880338 None:intergenic 25.0%
! TACTTAGTTTCTGAATCATT+TGG - Chr5:29879333-29879352 None:intergenic 25.0%
! TAGTGATTAACTATCTAACT+AGG - Chr5:29877642-29877661 None:intergenic 25.0%
! TAGTTGGATTCTGTTATAAA+AGG - Chr5:29878582-29878601 None:intergenic 25.0%
! TATCAATTGAATGGGATAAT+AGG - Chr5:29878957-29878976 None:intergenic 25.0%
! TGAAAATTAAAAATCATGCC+AGG - Chr5:29881135-29881154 None:intergenic 25.0%
! TGTATCATAGTATAAGTACT+TGG + Chr5:29877496-29877515 MsG0580026053.01.T01:intron 25.0%
! TTACACATTGAATTACAACA+TGG + Chr5:29877875-29877894 MsG0580026053.01.T01:intron 25.0%
! TTCATCTCATTCTATGTATT+TGG + Chr5:29875897-29875916 MsG0580026053.01.T01:intron 25.0%
! TTTCATGTGGTAATTTGAAT+TGG + Chr5:29881648-29881667 MsG0580026053.01.T01:three_prime_UTR 25.0%
!! AATTTATAAACATGATGGGA+AGG + Chr5:29876878-29876897 MsG0580026053.01.T01:intron 25.0%
!! ATGATGGTGATTGTTAATTA+AGG + Chr5:29875337-29875356 MsG0580026053.01.T01:intron 25.0%
!! ATTCATTATCTGTTGTTTGT+TGG + Chr5:29878273-29878292 MsG0580026053.01.T01:intron 25.0%
!! TAATGATGAAGTGGATATTT+TGG + Chr5:29877062-29877081 MsG0580026053.01.T01:intron 25.0%
!! TGATGGTGATTGTTAATTAA+GGG + Chr5:29875338-29875357 MsG0580026053.01.T01:intron 25.0%
!! TGTGATTTGATTTAAAGGAT+TGG - Chr5:29876305-29876324 None:intergenic 25.0%
!! TTCTCTGTGATTTGATTTAA+AGG - Chr5:29876310-29876329 None:intergenic 25.0%
!! TTTACTATTCGAGTTTACTT+AGG - Chr5:29875527-29875546 None:intergenic 25.0%
!! TTTGTCATCCTTTAAAAACA+TGG + Chr5:29880220-29880239 MsG0580026053.01.T01:intron 25.0%
!!! AATATACTGATTTTATAGGC+TGG + Chr5:29880789-29880808 MsG0580026053.01.T01:intron 25.0%
!!! AATTTCAAGTTGTAAAACCT+TGG - Chr5:29875486-29875505 None:intergenic 25.0%
!!! ATAGAAAGTATTCCCAAAAT+CGG - Chr5:29879072-29879091 None:intergenic 25.0%
!!! CAACAATACCATGTTTTTAA+AGG - Chr5:29880231-29880250 None:intergenic 25.0%
!!! CGTTTAGTTTATTTTTAGTC+AGG + Chr5:29881696-29881715 MsG0580026053.01.T01:three_prime_UTR 25.0%
!!! TTTTACTGCTTTATTCATTG+AGG + Chr5:29876700-29876719 MsG0580026053.01.T01:intron 25.0%
AAATAATATGTATGCACGGA+AGG + Chr5:29878011-29878030 MsG0580026053.01.T01:intron 30.0%
AACACATAAACGACTTAGAT+AGG - Chr5:29875395-29875414 None:intergenic 30.0%
AAGACAGAAACGAGTTATTT+AGG - Chr5:29875943-29875962 None:intergenic 30.0%
AAGTTCAAAGAAATTCCACA+CGG + Chr5:29879231-29879250 MsG0580026053.01.T01:intron 30.0%
AATATACATTTGCAGCCTAA+TGG - Chr5:29879295-29879314 None:intergenic 30.0%
ACAATGCAAATCATTCAACA+AGG + Chr5:29878102-29878121 MsG0580026053.01.T01:intron 30.0%
ACTTGATGCTTGAAATAAGT+GGG + Chr5:29880870-29880889 MsG0580026053.01.T01:intron 30.0%
ATCAATTAGTTACAGTTGGA+TGG + Chr5:29877610-29877629 MsG0580026053.01.T01:intron 30.0%
ATGTATGTGAATACACCAAA+TGG + Chr5:29877925-29877944 MsG0580026053.01.T01:intron 30.0%
CAAAGTTCTTACTGAGAATT+TGG + Chr5:29881512-29881531 MsG0580026053.01.T01:CDS 30.0%
CAAGATGGTCAATTAGTTAA+AGG - Chr5:29879780-29879799 None:intergenic 30.0%
CAATGCAAATCATTCAACAA+GGG + Chr5:29878103-29878122 MsG0580026053.01.T01:intron 30.0%
CGCATAAAAAATTTAAGTGC+TGG + Chr5:29880037-29880056 MsG0580026053.01.T01:intron 30.0%
CTATGATGGTTAACTATCTA+TGG - Chr5:29879828-29879847 None:intergenic 30.0%
CTGATATAGAAGTTAGTTAG+TGG - Chr5:29877297-29877316 None:intergenic 30.0%
GCAACAAAAAGTGAATAGAT+TGG + Chr5:29876981-29877000 MsG0580026053.01.T01:CDS 30.0%
GCATGTAAAAACGTAAACTT+GGG + Chr5:29875665-29875684 MsG0580026053.01.T01:intron 30.0%
GCTAGTATTTAATGATGAAG+TGG + Chr5:29877053-29877072 MsG0580026053.01.T01:intron 30.0%
GTTCTTGTGAATTAATCAAG+AGG - Chr5:29878312-29878331 None:intergenic 30.0%
TACTTAGGTAAAACTAGTTC+AGG - Chr5:29875512-29875531 None:intergenic 30.0%
TCTGTTATAAAAGGTAGTAC+TGG - Chr5:29878573-29878592 None:intergenic 30.0%
TGAAATAAGTGGGAAAATAC+AGG + Chr5:29880880-29880899 MsG0580026053.01.T01:intron 30.0%
TGAGTTAAACACTCAATTTG+TGG + Chr5:29875696-29875715 MsG0580026053.01.T01:intron 30.0%
TGATTCAGAAACTAAGTACA+AGG + Chr5:29879335-29879354 MsG0580026053.01.T01:intron 30.0%
TGATTTAATAGTCTGGTTAC+AGG + Chr5:29878079-29878098 MsG0580026053.01.T01:intron 30.0%
TGCTCAGGTAACAAATAAAA+CGG + Chr5:29875835-29875854 MsG0580026053.01.T01:intron 30.0%
TGTATACGAGTTTGTGAAAT+TGG + Chr5:29879670-29879689 MsG0580026053.01.T01:intron 30.0%
TTATAATGCGATGGAATCAA+AGG - Chr5:29880658-29880677 None:intergenic 30.0%
! ACGAAGAATATTTTGTAGTC+TGG + Chr5:29878362-29878381 MsG0580026053.01.T01:intron 30.0%
! ACGGTTTAAACCAGTTTTTA+CGG - Chr5:29878800-29878819 None:intergenic 30.0%
! ACTTTGTAATTTGTAAGGCT+TGG + Chr5:29876648-29876667 MsG0580026053.01.T01:intron 30.0%
! CAGCAATGAAATGTGAATTT+TGG + Chr5:29879201-29879220 MsG0580026053.01.T01:intron 30.0%
! TAACATTGATGACTCAGATA+TGG - Chr5:29877668-29877687 None:intergenic 30.0%
! TTGAAATATCAATCTAGCTC+TGG + Chr5:29881173-29881192 MsG0580026053.01.T01:intron 30.0%
! TTGCTGGTTAATTGTTAACA+GGG + Chr5:29877023-29877042 MsG0580026053.01.T01:intron 30.0%
! TTTACTGAGGTTGATTAACT+CGG + Chr5:29875577-29875596 MsG0580026053.01.T01:intron 30.0%
! TTTGCTGGTTAATTGTTAAC+AGG + Chr5:29877022-29877041 MsG0580026053.01.T01:intron 30.0%
!! AAAAATTTAAGTGCTGGTCT+TGG + Chr5:29880043-29880062 MsG0580026053.01.T01:intron 30.0%
!! AAAATTTAAGTGCTGGTCTT+GGG + Chr5:29880044-29880063 MsG0580026053.01.T01:intron 30.0%
!! AAACGACACTCATTTTGAAA+CGG + Chr5:29876608-29876627 MsG0580026053.01.T01:intron 30.0%
!! CAAGTTTAATTTGTGCATGA+TGG + Chr5:29875321-29875340 MsG0580026053.01.T01:intron 30.0%
!! TAGAAAGTATTCCCAAAATC+GGG - Chr5:29879071-29879090 None:intergenic 30.0%
!!! CGGTTTTTTAAACATTGGTT+AGG - Chr5:29878680-29878699 None:intergenic 30.0%
!!! GTTTTGTTTGTACATGGAAA+AGG + Chr5:29880156-29880175 MsG0580026053.01.T01:intron 30.0%
!!! TGTTCCGGTTTTTTAAACAT+TGG - Chr5:29878685-29878704 None:intergenic 30.0%
!!! TTTAGGGTTTTGTTTGTACA+TGG + Chr5:29880150-29880169 MsG0580026053.01.T01:intron 30.0%
AAACAGGTAGTCAGTTAAAC+CGG + Chr5:29878767-29878786 MsG0580026053.01.T01:intron 35.0%
AAACATACACATGTACCTGT+AGG - Chr5:29875290-29875309 None:intergenic 35.0%
AAACGGTTTAATGCTTACAG+AGG + Chr5:29875852-29875871 MsG0580026053.01.T01:intron 35.0%
AAATCCCTAAGCTCAATACA+CGG + Chr5:29881297-29881316 MsG0580026053.01.T01:intron 35.0%
AACTGATATAATTGCTGCAG+TGG + Chr5:29877333-29877352 MsG0580026053.01.T01:intron 35.0%
AAGAAATCACATACTGAGCT+TGG - Chr5:29879459-29879478 None:intergenic 35.0%
AAGACAATGAGAGAGAAAAC+AGG + Chr5:29877198-29877217 MsG0580026053.01.T01:intron 35.0%
AATTCATAGCTGAACAAAGC+TGG - Chr5:29880614-29880633 None:intergenic 35.0%
ACTGTGCCTAGTATATTAAG+CGG + Chr5:29878649-29878668 MsG0580026053.01.T01:intron 35.0%
AGAAAAAAGGGGGAAAATAC+AGG + Chr5:29878157-29878176 MsG0580026053.01.T01:intron 35.0%
AGAACGACTGAGATAGAAAA+AGG - Chr5:29877438-29877457 None:intergenic 35.0%
AGACAATGAGAGAGAAAACA+GGG + Chr5:29877199-29877218 MsG0580026053.01.T01:intron 35.0%
AGACAATGCTCTAGTATGAA+AGG + Chr5:29878855-29878874 MsG0580026053.01.T01:intron 35.0%
AGCAATGAGAAAAGAAACAG+AGG + Chr5:29878491-29878510 MsG0580026053.01.T01:intron 35.0%
AGTTCAAAGAAATTCCACAC+GGG + Chr5:29879232-29879251 MsG0580026053.01.T01:intron 35.0%
AGTTTGTGCTCATGACATTA+AGG + Chr5:29877386-29877405 MsG0580026053.01.T01:intron 35.0%
ATCAAGTCTATTCCATGTAC+AGG - Chr5:29880857-29880876 None:intergenic 35.0%
ATGCCAAAAACGTGTTAACT+TGG - Chr5:29875649-29875668 None:intergenic 35.0%
ATGTGAATACACCAAATGGT+GGG + Chr5:29877929-29877948 MsG0580026053.01.T01:intron 35.0%
ATTGCACACAGATTAAGGAA+TGG - Chr5:29876582-29876601 None:intergenic 35.0%
CAATAGAATAGATACGGAGT+CGG + Chr5:29879892-29879911 MsG0580026053.01.T01:intron 35.0%
CACTTTCAATTCCATTAACC+AGG - Chr5:29876836-29876855 None:intergenic 35.0%
CAGCGCGAAATTAATATAAC+AGG - Chr5:29875738-29875757 None:intergenic 35.0%
CTATGTAACAACAGTTATGC+AGG + Chr5:29881672-29881691 MsG0580026053.01.T01:three_prime_UTR 35.0%
CTCAGATATGGTAACTATGA+TGG - Chr5:29879842-29879861 None:intergenic 35.0%
CTGGTAAATTTAATCTCCAC+AGG - Chr5:29880188-29880207 None:intergenic 35.0%
CTTCCAAATCTATGTGGTAT+AGG - Chr5:29877757-29877776 None:intergenic 35.0%
GAAGAAATCTGTGGTTAACA+TGG + Chr5:29876904-29876923 MsG0580026053.01.T01:intron 35.0%
GAAGCTGAAAGAGAATATAC+TGG + Chr5:29881478-29881497 MsG0580026053.01.T01:intron 35.0%
GACTTGATGCTTGAAATAAG+TGG + Chr5:29880869-29880888 MsG0580026053.01.T01:intron 35.0%
GGCATGTAAAAACGTAAACT+TGG + Chr5:29875664-29875683 MsG0580026053.01.T01:intron 35.0%
GGTAGAAAGAATAAATGGCA+AGG - Chr5:29876210-29876229 None:intergenic 35.0%
GTGGAGATTAAATTTACCAG+CGG + Chr5:29880188-29880207 MsG0580026053.01.T01:intron 35.0%
TAACTGTATAAATGCTGCAG+TGG + Chr5:29878614-29878633 MsG0580026053.01.T01:intron 35.0%
TACCACATAGATTTGGAAGT+AGG + Chr5:29877758-29877777 MsG0580026053.01.T01:intron 35.0%
TACCTACTTCCAAATCTATG+TGG - Chr5:29877763-29877782 None:intergenic 35.0%
TACGAGTTTGTGAAATTGGT+AGG + Chr5:29879674-29879693 MsG0580026053.01.T01:intron 35.0%
TATGTGAATACACCAAATGG+TGG + Chr5:29877928-29877947 MsG0580026053.01.T01:intron 35.0%
TCAAGTCTATTCCATGTACA+GGG - Chr5:29880856-29880875 None:intergenic 35.0%
TGAAAGGATCGATCAATTCT+GGG + Chr5:29876064-29876083 MsG0580026053.01.T01:CDS 35.0%
TGATTCTAAACTCTTGACCA+AGG + Chr5:29875466-29875485 MsG0580026053.01.T01:intron 35.0%
TGGACGTCAGTTATACAAAA+AGG - Chr5:29876285-29876304 None:intergenic 35.0%
TGTATTGAGCTTAGGGATTT+GGG - Chr5:29881297-29881316 None:intergenic 35.0%
TGTGAGTAAGAAGAAGAGAA+TGG - Chr5:29879131-29879150 None:intergenic 35.0%
TTCCTTAATCTGTGTGCAAT+TGG + Chr5:29876582-29876601 MsG0580026053.01.T01:intron 35.0%
TTCTCTTCTTCTTACTCACA+TGG + Chr5:29879131-29879150 MsG0580026053.01.T01:intron 35.0%
TTGAAAGGATCGATCAATTC+TGG + Chr5:29876063-29876082 MsG0580026053.01.T01:CDS 35.0%
TTGACACTTAATCAACCAGT+TGG - Chr5:29880515-29880534 None:intergenic 35.0%
TTGGTCATCGTAAATGGAAT+AGG + Chr5:29875139-29875158 MsG0580026053.01.T01:CDS 35.0%
TTTAAAAAACCGGAACAGAC+CGG + Chr5:29878688-29878707 MsG0580026053.01.T01:intron 35.0%
! ATCCATTTCAACCCGATTTT+GGG + Chr5:29879057-29879076 MsG0580026053.01.T01:intron 35.0%
! ATTTCGAAGTGCTATTGCTA+TGG + Chr5:29876951-29876970 MsG0580026053.01.T01:CDS 35.0%
! CGGTTTAAACCAGTTTTTAC+GGG - Chr5:29878799-29878818 None:intergenic 35.0%
! GATGACCAACTCGAAAATTT+TGG - Chr5:29875128-29875147 None:intergenic 35.0%
! TATCCATTTCAACCCGATTT+TGG + Chr5:29879056-29879075 MsG0580026053.01.T01:intron 35.0%
! TATCTGTTGCTTCTTGTTGT+GGG + Chr5:29881009-29881028 MsG0580026053.01.T01:intron 35.0%
! TATCTGTTGTTTGTTGGTGT+GGG + Chr5:29878279-29878298 MsG0580026053.01.T01:intron 35.0%
! TGTATTTTCCCCCTTTTTTC+TGG - Chr5:29878158-29878177 None:intergenic 35.0%
! TGTTAACTTGGAGGTAAACT+TGG - Chr5:29875637-29875656 None:intergenic 35.0%
! TTATCTGTTGTTTGTTGGTG+TGG + Chr5:29878278-29878297 MsG0580026053.01.T01:intron 35.0%
! TTTCGAAGTGCTATTGCTAT+GGG + Chr5:29876952-29876971 MsG0580026053.01.T01:CDS 35.0%
!! AAGCGACACACATTTTGAAA+CGG - Chr5:29876362-29876381 None:intergenic 35.0%
!! ATGAGTTGATGCCAGAAAAA+AGG + Chr5:29878144-29878163 MsG0580026053.01.T01:intron 35.0%
!! ATTTTAGTAAAAGGGCAACC+CGG - Chr5:29877995-29878014 None:intergenic 35.0%
!! GGAAGGTTTTGGTATGAAAA+TGG + Chr5:29878028-29878047 MsG0580026053.01.T01:intron 35.0%
!! TGAGTTGATGCCAGAAAAAA+GGG + Chr5:29878145-29878164 MsG0580026053.01.T01:intron 35.0%
!! TGATTTTATAGGCTGGTTAC+AGG + Chr5:29880796-29880815 MsG0580026053.01.T01:intron 35.0%
!!! TCATTCCTTTTTTGGTGTGT+TGG + Chr5:29880280-29880299 MsG0580026053.01.T01:intron 35.0%
!!! TTGGACGATCATTCCTTTTT+TGG + Chr5:29880272-29880291 MsG0580026053.01.T01:intron 35.0%
AAACTCGTACGAGTTTACTG+AGG + Chr5:29875564-29875583 MsG0580026053.01.T01:intron 40.0%
AACAGACCGGATTGTTTAAC+CGG + Chr5:29878701-29878720 MsG0580026053.01.T01:intron 40.0%
AAGATGATACCTTGCACACA+AGG - Chr5:29878902-29878921 None:intergenic 40.0%
AATCAAAGGCTTGCACAATG+AGG - Chr5:29880644-29880663 None:intergenic 40.0%
AGAAGAGAATGGATGTGCAT+TGG - Chr5:29879120-29879139 None:intergenic 40.0%
AGAATGTGCCGTAACAGTAA+AGG - Chr5:29875251-29875270 None:intergenic 40.0%
AGCCAATTGCACACAGATTA+AGG - Chr5:29876587-29876606 None:intergenic 40.0%
AGTAAGAACTTTGACCTCCT+CGG - Chr5:29881557-29881576 None:intergenic 40.0%
AGTCACCAGATATGAGCTTT+GGG + Chr5:29879492-29879511 MsG0580026053.01.T01:intron 40.0%
ATAAACCACCAAGCAAACCT+TGG + Chr5:29879160-29879179 MsG0580026053.01.T01:intron 40.0%
ATGAAAGGAGAATGCTCCTT+TGG + Chr5:29878870-29878889 MsG0580026053.01.T01:intron 40.0%
CAACAGTGATGACTCAGATA+TGG - Chr5:29881366-29881385 None:intergenic 40.0%
CAAGATCTTCAAGCACATCA+AGG - Chr5:29881042-29881061 None:intergenic 40.0%
CAATAGTGACGACTCAGATA+TGG - Chr5:29879854-29879873 None:intergenic 40.0%
CAATTATTCTGCTACTGCCT+TGG + Chr5:29879426-29879445 MsG0580026053.01.T01:intron 40.0%
CCAAATCTATGTGGTATAGG+AGG - Chr5:29877754-29877773 None:intergenic 40.0%
CCTAATGGTACCTGTTTAGA+GGG - Chr5:29879280-29879299 None:intergenic 40.0%
CCTCCTATACCACATAGATT+TGG + Chr5:29877751-29877770 MsG0580026053.01.T01:intron 40.0%
CGACTCCGTATCTATTCTAT+TGG - Chr5:29879894-29879913 None:intergenic 40.0%
CTGAAAGAGAATATACTGGC+CGG + Chr5:29881482-29881501 MsG0580026053.01.T01:CDS 40.0%
CTGTGCCTAGTATATTAAGC+GGG + Chr5:29878650-29878669 MsG0580026053.01.T01:intron 40.0%
CTTGATGTGCTTGAAGATCT+TGG + Chr5:29881040-29881059 MsG0580026053.01.T01:intron 40.0%
CTTGGGTTTACTGAATCTAC+CGG + Chr5:29877514-29877533 MsG0580026053.01.T01:intron 40.0%
GAAAGGATCGATCAATTCTG+GGG + Chr5:29876065-29876084 MsG0580026053.01.T01:CDS 40.0%
GAATTTGTGCACGAGTTACA+AGG - Chr5:29876231-29876250 None:intergenic 40.0%
GACAATGAGAGAGAAAACAG+GGG + Chr5:29877200-29877219 MsG0580026053.01.T01:intron 40.0%
GAGTACCCGCTTAATATACT+AGG - Chr5:29878658-29878677 None:intergenic 40.0%
GATATGTATCGTCCTGTATC+CGG - Chr5:29880120-29880139 None:intergenic 40.0%
GGAAGGAAAGAAGAAATCTG+TGG + Chr5:29876895-29876914 MsG0580026053.01.T01:intron 40.0%
GTGTATTGAGCTTAGGGATT+TGG - Chr5:29881298-29881317 None:intergenic 40.0%
GTTATTAAGCACCCTGTACA+TGG + Chr5:29880842-29880861 MsG0580026053.01.T01:CDS 40.0%
TAAACCCTGTCACGTTAGTA+CGG - Chr5:29878829-29878848 None:intergenic 40.0%
TAGCTGAACAAAGCTGGATT+TGG - Chr5:29880608-29880627 None:intergenic 40.0%
TCAATTCCATTAACCAGGAC+AGG - Chr5:29876831-29876850 None:intergenic 40.0%
TCCTCCATAAAATCAGAAGC+TGG + Chr5:29879934-29879953 MsG0580026053.01.T01:intron 40.0%
TCTTACTGAGAATTTGGCTG+AGG + Chr5:29881518-29881537 MsG0580026053.01.T01:CDS 40.0%
TCTTACTGAGAATTTGGCTG+CGG + Chr5:29881518-29881537 MsG0580026053.01.T01:CDS 40.0%
TGAAAGGAGAATGCTCCTTT+GGG + Chr5:29878871-29878890 MsG0580026053.01.T01:intron 40.0%
TGTGAATACACCAAATGGTG+GGG + Chr5:29877930-29877949 MsG0580026053.01.T01:intron 40.0%
TGTGCAGTGTTATAATGCGA+TGG - Chr5:29880667-29880686 None:intergenic 40.0%
TTAAACAATCCGGTCTGTTC+CGG - Chr5:29878700-29878719 None:intergenic 40.0%
! AATTCTGGGGATCAACCTAA+AGG + Chr5:29876078-29876097 MsG0580026053.01.T01:CDS 40.0%
! ACCTGTTTTGTACAGATGTC+CGG - Chr5:29878755-29878774 None:intergenic 40.0%
! AGTTGATGCCAGAAAAAAGG+GGG + Chr5:29878147-29878166 MsG0580026053.01.T01:intron 40.0%
! ATTTGTTACCTGAGCATCAG+TGG - Chr5:29875831-29875850 None:intergenic 40.0%
! CATGCCAGCTTCTGATTTTA+TGG - Chr5:29879941-29879960 None:intergenic 40.0%
! CCAAAAACGTGTTAACTTGG+AGG - Chr5:29875646-29875665 None:intergenic 40.0%
! CCTCCAAGTTAACACGTTTT+TGG + Chr5:29875643-29875662 MsG0580026053.01.T01:intron 40.0%
! CTATCTGTTGCTTCTTGTTG+TGG + Chr5:29881008-29881027 MsG0580026053.01.T01:intron 40.0%
! GGTTTGCTTGGTGGTTTATT+AGG - Chr5:29879159-29879178 None:intergenic 40.0%
! TATGTATGCACGGAAGGTTT+TGG + Chr5:29878017-29878036 MsG0580026053.01.T01:intron 40.0%
! TCGTTGTAGTTGCTGTTGAA+AGG + Chr5:29876048-29876067 MsG0580026053.01.T01:intron 40.0%
! TTGCATGATAGTTTGTAGCC+TGG + Chr5:29881114-29881133 MsG0580026053.01.T01:intron 40.0%
! TTGGAGGTAAACTTGGTTTG+TGG - Chr5:29875630-29875649 None:intergenic 40.0%
!! CAGTTTTTACGGGCTTTTTC+CGG - Chr5:29878789-29878808 None:intergenic 40.0%
!! GAGTTGATGCCAGAAAAAAG+GGG + Chr5:29878146-29878165 MsG0580026053.01.T01:intron 40.0%
!! GTTTTGTTGCATGCATTTGC+TGG + Chr5:29877007-29877026 MsG0580026053.01.T01:intron 40.0%
!! TTCCCAAAATCGGGTTGAAA+TGG - Chr5:29879062-29879081 None:intergenic 40.0%
!! TTCGAGTTGGTCATCGTAAA+TGG + Chr5:29875133-29875152 MsG0580026053.01.T01:CDS 40.0%
!!! CTTTTTTGGTGTGTTGGTGA+GGG + Chr5:29880286-29880305 MsG0580026053.01.T01:intron 40.0%
!!! GACACACATTTTGAAACGGA+GGG - Chr5:29876358-29876377 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + Chr5:29876612-29876631 MsG0580026053.01.T01:intron 40.0%
!!! TGGAGCCAAAATTTTCGAGT+TGG + Chr5:29875120-29875139 MsG0580026053.01.T01:CDS 40.0%
AAAGAGAATATACTGGCCGG+TGG + Chr5:29881485-29881504 MsG0580026053.01.T01:CDS 45.0%
AAATCTCCTCCCGCAAATGT+AGG + Chr5:29876134-29876153 MsG0580026053.01.T01:intron 45.0%
AAGCTCAATACACGGCTAGA+TGG + Chr5:29881305-29881324 MsG0580026053.01.T01:intron 45.0%
AATACAGAGTAGTCCTGTGC+CGG - Chr5:29877536-29877555 None:intergenic 45.0%
AATCTCCTCCCGCAAATGTA+GGG + Chr5:29876135-29876154 MsG0580026053.01.T01:intron 45.0%
ACAACGAAGTCCTGTGTAAG+TGG - Chr5:29879540-29879559 None:intergenic 45.0%
ACATGGTGATACTCCTACAC+AGG + Chr5:29876921-29876940 MsG0580026053.01.T01:intron 45.0%
AGGAAGGGATCATCGTGAAT+CGG - Chr5:29879725-29879744 None:intergenic 45.0%
AGTCAGTCAAGATCCTACAC+AGG - Chr5:29879751-29879770 None:intergenic 45.0%
ATCCTACACAGGATCAGGAA+GGG - Chr5:29879740-29879759 None:intergenic 45.0%
ATTGAACTGTGTTCCTGTCC+TGG + Chr5:29876815-29876834 MsG0580026053.01.T01:intron 45.0%
ATTGACACCCCTACATTTGC+GGG - Chr5:29876146-29876165 None:intergenic 45.0%
CAACGAAGTCCTGTGTAAGT+GGG - Chr5:29879539-29879558 None:intergenic 45.0%
CAAGGAATAGAGAAAGCAGC+TGG - Chr5:29876192-29876211 None:intergenic 45.0%
CAGCTGTGACTAACTCAAGA+TGG - Chr5:29879795-29879814 None:intergenic 45.0%
CAGTCACCAGATATGAGCTT+TGG + Chr5:29879491-29879510 MsG0580026053.01.T01:intron 45.0%
CATACACATGTACCTGTAGG+TGG - Chr5:29875287-29875306 None:intergenic 45.0%
CATCTTGAGTTAGTCACAGC+TGG + Chr5:29879793-29879812 MsG0580026053.01.T01:intron 45.0%
CATTGACACCCCTACATTTG+CGG - Chr5:29876147-29876166 None:intergenic 45.0%
CCCTCTAAACAGGTACCATT+AGG + Chr5:29879277-29879296 MsG0580026053.01.T01:intron 45.0%
CCTCACCAACACACCAAAAA+AGG - Chr5:29880288-29880307 None:intergenic 45.0%
CGAAATCCAGAAACCTGTGT+AGG - Chr5:29876937-29876956 None:intergenic 45.0%
CGATACCTAAAGGAACGATG+CGG - Chr5:29875221-29875240 None:intergenic 45.0%
CGGAAAAAGCCCGTAAAAAC+TGG + Chr5:29878787-29878806 MsG0580026053.01.T01:intron 45.0%
CTAGCCGTGTATTGAGCTTA+GGG - Chr5:29881304-29881323 None:intergenic 45.0%
CTGAGCTTGGAAGTTAACCA+AGG - Chr5:29879446-29879465 None:intergenic 45.0%
CTGGCATCAACTCATGTACA+GGG - Chr5:29878139-29878158 None:intergenic 45.0%
CTGTCACGTTAGTACGGTTT+CGG - Chr5:29878823-29878842 None:intergenic 45.0%
CTTACTGAACCCACTTACAC+AGG + Chr5:29879527-29879546 MsG0580026053.01.T01:intron 45.0%
GAAACCGTACTAACGTGACA+GGG + Chr5:29878822-29878841 MsG0580026053.01.T01:intron 45.0%
GAATCGGCATCTTCACCTTT+AGG - Chr5:29876096-29876115 None:intergenic 45.0%
GATACTCCTACACAGGTTTC+TGG + Chr5:29876928-29876947 MsG0580026053.01.T01:intron 45.0%
GCCTAATGGTACCTGTTTAG+AGG - Chr5:29879281-29879300 None:intergenic 45.0%
GTAAGAACTTTGACCTCCAC+CGG - Chr5:29881504-29881523 None:intergenic 45.0%
GTAAGAACTTTGACCTCCTC+GGG - Chr5:29881556-29881575 None:intergenic 45.0%
GTCACCAGATATGAGCTTTG+GGG + Chr5:29879493-29879512 MsG0580026053.01.T01:intron 45.0%
GTCGCCATCCTTTACTGTTA+CGG + Chr5:29875240-29875259 MsG0580026053.01.T01:CDS 45.0%
TACCTGAGCATCAGTGGAAT+CGG - Chr5:29875825-29875844 None:intergenic 45.0%
TACTGAGAATTTGGCTGAGG+AGG + Chr5:29881573-29881592 MsG0580026053.01.T01:CDS 45.0%
TCAAGATCCTACACAGGATC+AGG - Chr5:29879745-29879764 None:intergenic 45.0%
TCCGGACATCTGTACAAAAC+AGG + Chr5:29878751-29878770 MsG0580026053.01.T01:intron 45.0%
TCTAGCCGTGTATTGAGCTT+AGG - Chr5:29881305-29881324 None:intergenic 45.0%
TCTGGCATCAACTCATGTAC+AGG - Chr5:29878140-29878159 None:intergenic 45.0%
TGACAAACAACAAAAGCCGC+TGG - Chr5:29880207-29880226 None:intergenic 45.0%
TGATGTGATAGTCCGGATAC+AGG + Chr5:29880105-29880124 MsG0580026053.01.T01:intron 45.0%
TGATTCCGCATCGTTCCTTT+AGG + Chr5:29875213-29875232 MsG0580026053.01.T01:intron 45.0%
TGTGCCGTAACAGTAAAGGA+TGG - Chr5:29875247-29875266 None:intergenic 45.0%
TGTGTTCCTGTCCTGGTTAA+TGG + Chr5:29876822-29876841 MsG0580026053.01.T01:intron 45.0%
TTCATTGCTGCAAGCCATGT+GGG - Chr5:29879191-29879210 None:intergenic 45.0%
TTGAGTTAGTCACAGCTGGA+TGG + Chr5:29879797-29879816 MsG0580026053.01.T01:intron 45.0%
TTTACTGAATCTACCGGCAC+AGG + Chr5:29877520-29877539 MsG0580026053.01.T01:intron 45.0%
TTTCATTGCTGCAAGCCATG+TGG - Chr5:29879192-29879211 None:intergenic 45.0%
! ATGGAAAAGGCTCTAACCTG+TGG + Chr5:29880169-29880188 MsG0580026053.01.T01:intron 45.0%
! GCCAGCTTCTGATTTTATGG+AGG - Chr5:29879938-29879957 None:intergenic 45.0%
! TCACCAGATATGAGCTTTGG+GGG + Chr5:29879494-29879513 MsG0580026053.01.T01:intron 45.0%
! TTTGGCTCCACTTATCGTCA+TGG - Chr5:29875110-29875129 None:intergenic 45.0%
! TTTTGTACAGATGTCCGGAC+CGG - Chr5:29878750-29878769 None:intergenic 45.0%
!! ATGAGCTTTGGGGGAGTATT+AGG + Chr5:29879503-29879522 MsG0580026053.01.T01:intron 45.0%
!! TGAGCTTTGGGGGAGTATTA+GGG + Chr5:29879504-29879523 MsG0580026053.01.T01:intron 45.0%
!! TGCTGGTCTTGGGATGAAAA+TGG + Chr5:29880054-29880073 MsG0580026053.01.T01:intron 45.0%
!!! CCTTTTTTGGTGTGTTGGTG+AGG + Chr5:29880285-29880304 MsG0580026053.01.T01:intron 45.0%
!!! CGACACACATTTTGAAACGG+AGG - Chr5:29876359-29876378 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + Chr5:29876611-29876630 MsG0580026053.01.T01:intron 45.0%
!!! ATAATACTTTTTTTTTTTAA+TGG + Chr5:29880714-29880733 MsG0580026053.01.T01:intron 5.0%
AAGGGATCATCGTGAATCGG+GGG - Chr5:29879722-29879741 None:intergenic 50.0%
AATTTGGCTGCGGAGGAGTA+TGG + Chr5:29881528-29881547 MsG0580026053.01.T01:CDS 50.0%
ACACATGTACCTGTAGGTGG+CGG - Chr5:29875284-29875303 None:intergenic 50.0%
ACTCCCCCAAAGCTCATATC+TGG - Chr5:29879500-29879519 None:intergenic 50.0%
AGGATGGCGACGATACCTAA+AGG - Chr5:29875231-29875250 None:intergenic 50.0%
ATCCCTTCCTGATCCTGTGT+AGG + Chr5:29879735-29879754 MsG0580026053.01.T01:intron 50.0%
ATCTCCTCCCGCAAATGTAG+GGG + Chr5:29876136-29876155 MsG0580026053.01.T01:intron 50.0%
CACGTTAGTACGGTTTCGGA+CGG - Chr5:29878819-29878838 None:intergenic 50.0%
CCCATCCACCACAAAATGCA+GGG + Chr5:29880539-29880558 MsG0580026053.01.T01:intron 50.0%
CGAAACCGTACTAACGTGAC+AGG + Chr5:29878821-29878840 MsG0580026053.01.T01:intron 50.0%
CTCTCTCTCTCCCTCTAAAC+AGG + Chr5:29879267-29879286 MsG0580026053.01.T01:intron 50.0%
CTGATGCTCAGGTAACCAAC+TGG + Chr5:29880497-29880516 MsG0580026053.01.T01:intron 50.0%
GAAGGGATCATCGTGAATCG+GGG - Chr5:29879723-29879742 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGACA+AGG - Chr5:29879258-29879277 None:intergenic 50.0%
GATCCTACACAGGATCAGGA+AGG - Chr5:29879741-29879760 None:intergenic 50.0%
GCACACAAGGCTAAACCCAA+AGG - Chr5:29878889-29878908 None:intergenic 50.0%
GCTGAAAGAAGACTACGAGC+CGG + Chr5:29880439-29880458 MsG0580026053.01.T01:CDS 50.0%
GGAAGGGATCATCGTGAATC+GGG - Chr5:29879724-29879743 None:intergenic 50.0%
GTTGGTTACCTGAGCATCAG+CGG - Chr5:29880497-29880516 None:intergenic 50.0%
TACTGAGAATTTGGCTGCGG+AGG + Chr5:29881521-29881540 MsG0580026053.01.T01:CDS 50.0%
TCATTGCTGCAAGCCATGTG+GGG - Chr5:29879190-29879209 None:intergenic 50.0%
TGAATCGGGGGATCGTAACA+CGG - Chr5:29879710-29879729 None:intergenic 50.0%
! CGTGACATCCCTGCATTTTG+TGG - Chr5:29880550-29880569 None:intergenic 50.0%
! GACATCCCTGCATTTTGTGG+TGG - Chr5:29880547-29880566 None:intergenic 50.0%
!! TCCCTGCATTTTGTGGTGGA+TGG - Chr5:29880543-29880562 None:intergenic 50.0%
!! TGCTGATTCCACTGATGCTC+AGG + Chr5:29875820-29875839 MsG0580026053.01.T01:CDS 50.0%
!! TGGGTTTAGCCTTGTGTGCA+AGG + Chr5:29878890-29878909 MsG0580026053.01.T01:intron 50.0%
!!! CCCTGCATTTTGTGGTGGAT+GGG - Chr5:29880542-29880561 None:intergenic 50.0%
!!! CCTGCATTTTGTGGTGGATG+GGG - Chr5:29880541-29880560 None:intergenic 50.0%
!!! CTGCATTTTGTGGTGGATGG+GGG - Chr5:29880540-29880559 None:intergenic 50.0%
!!! TGCATTTTGTGGTGGATGGG+GGG - Chr5:29880539-29880558 None:intergenic 50.0%
AAACCTTGGCCAACCCCACA+TGG + Chr5:29879174-29879193 MsG0580026053.01.T01:intron 55.0%
AAGTCCGTGGATCAGGCTGA+GGG + Chr5:29875782-29875801 MsG0580026053.01.T01:CDS 55.0%
ACTAAAGCTCCCGCATACGC+AGG - Chr5:29877969-29877988 None:intergenic 55.0%
AGCTCGACTATGTCCTCCAC+CGG - Chr5:29880461-29880480 None:intergenic 55.0%
CAATGTTACCCGCCACCTAC+AGG + Chr5:29875272-29875291 MsG0580026053.01.T01:CDS 55.0%
CACATGTACCTGTAGGTGGC+GGG - Chr5:29875283-29875302 None:intergenic 55.0%
CCCCATCCACCACAAAATGC+AGG + Chr5:29880538-29880557 MsG0580026053.01.T01:intron 55.0%
CTAAAGCTCCCGCATACGCA+GGG - Chr5:29877968-29877987 None:intergenic 55.0%
GAAAGAAGACTACGAGCCGG+TGG + Chr5:29880442-29880461 MsG0580026053.01.T01:CDS 55.0%
GACCGGATTGTTTAACCGGC+TGG + Chr5:29878705-29878724 MsG0580026053.01.T01:intron 55.0%
GAGAATATACTGGCCGGTGG+AGG + Chr5:29881488-29881507 MsG0580026053.01.T01:CDS 55.0%
GCAGGGATGTCACGATCTGT+TGG + Chr5:29880556-29880575 MsG0580026053.01.T01:intron 55.0%
GGATTGTTTAACCGGCTGGC+CGG + Chr5:29878709-29878728 MsG0580026053.01.T01:intron 55.0%
GGCCAGCCGGTTAAACAATC+CGG - Chr5:29878710-29878729 None:intergenic 55.0%
TCAGCCTGATCCACGGACTT+GGG - Chr5:29875782-29875801 None:intergenic 55.0%
TGTCGCGCCATGACGATAAG+TGG + Chr5:29875100-29875119 MsG0580026053.01.T01:exon 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG + Chr5:29877973-29877992 MsG0580026053.01.T01:intron 55.0%
! GCGCTGCAGTTGCTGTTGAA+TGG + Chr5:29875752-29875771 MsG0580026053.01.T01:intron 55.0%
! GTTGGCCAAGGTTTGCTTGG+TGG - Chr5:29879168-29879187 None:intergenic 55.0%
!! CTGTAGGTGGCGGGTAACAT+TGG - Chr5:29875274-29875293 None:intergenic 55.0%
!! TGCCGATTCCACTGATGCTC+AGG + Chr5:29876107-29876126 MsG0580026053.01.T01:CDS 55.0%
!! TGCTGATTCCGCTGATGCTC+AGG + Chr5:29880486-29880505 MsG0580026053.01.T01:CDS 55.0%
!!! GCATTTTGTGGTGGATGGGG+GGG - Chr5:29880538-29880557 None:intergenic 55.0%
ACCACCCTCAGCCTGATCCA+CGG - Chr5:29875789-29875808 None:intergenic 60.0%
AGAAGACTACGAGCCGGTGG+AGG + Chr5:29880445-29880464 MsG0580026053.01.T01:CDS 60.0%
AGAGAGAGACAAGGCCCGTG+TGG - Chr5:29879249-29879268 None:intergenic 60.0%
ATCGCCCAAGTCCGTGGATC+AGG + Chr5:29875775-29875794 MsG0580026053.01.T01:CDS 60.0%
CAAGTCCGTGGATCAGGCTG+AGG + Chr5:29875781-29875800 MsG0580026053.01.T01:CDS 60.0%
CCGGAAACAGCCCGGATTAC+CGG - Chr5:29878731-29878750 None:intergenic 60.0%
CTCAGCCTGATCCACGGACT+TGG - Chr5:29875783-29875802 None:intergenic 60.0%
GAATGGATCGCCCAAGTCCG+TGG + Chr5:29875769-29875788 MsG0580026053.01.T01:CDS 60.0%
GACACCCCTACATTTGCGGG+AGG - Chr5:29876143-29876162 None:intergenic 60.0%
TGCTGCAAGCCATGTGGGGT+TGG - Chr5:29879186-29879205 None:intergenic 60.0%
! AATCCGGGCTGTTTCCGGTC+CGG + Chr5:29878733-29878752 MsG0580026053.01.T01:intron 60.0%
! CCGGTAATCCGGGCTGTTTC+CGG + Chr5:29878728-29878747 MsG0580026053.01.T01:intron 60.0%
! TAACCGGCTGGCCGGTAATC+CGG + Chr5:29878717-29878736 MsG0580026053.01.T01:intron 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG + Chr5:29877974-29877993 MsG0580026053.01.T01:intron 60.0%
!! AAGCCATGTGGGGTTGGCCA+AGG - Chr5:29879180-29879199 None:intergenic 60.0%
!! GGGGTTGGCCAAGGTTTGCT+TGG - Chr5:29879171-29879190 None:intergenic 60.0%
CATACGCAGGGTCCGGGAAG+GGG - Chr5:29877956-29877975 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + Chr5:29877956-29877975 MsG0580026053.01.T01:intron 65.0%
GCATACGCAGGGTCCGGGAA+GGG - Chr5:29877957-29877976 None:intergenic 65.0%
TCCGTGGATCAGGCTGAGGG+TGG + Chr5:29875785-29875804 MsG0580026053.01.T01:CDS 65.0%
TGTCCGGACCGGAAACAGCC+CGG - Chr5:29878739-29878758 None:intergenic 65.0%
TTCCCGGACCCTGCGTATGC+GGG + Chr5:29877957-29877976 MsG0580026053.01.T01:intron 65.0%
! AACCGGCTGGCCGGTAATCC+GGG + Chr5:29878718-29878737 MsG0580026053.01.T01:intron 65.0%
! CAAATGGTGGGGCCCCTTCC+CGG + Chr5:29877941-29877960 MsG0580026053.01.T01:intron 65.0%
! GAGGAGTATGGAGCCCGAGG+AGG + Chr5:29881540-29881559 MsG0580026053.01.T01:CDS 65.0%
AGCCCGGATTACCGGCCAGC+CGG - Chr5:29878723-29878742 None:intergenic 70.0%
CGCATACGCAGGGTCCGGGA+AGG - Chr5:29877958-29877977 None:intergenic 70.0%
CGGGAAGGGGCCCCACCATT+TGG - Chr5:29877943-29877962 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - Chr5:29877962-29877981 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - Chr5:29877963-29877982 None:intergenic 70.0%
! GCGGAGGAGTATGGAGCCCG+AGG + Chr5:29881537-29881556 MsG0580026053.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 29875097 29881792 29875097 ID=MsG0580026053.01;Name=MsG0580026053.01
Chr5 mRNA 29875097 29881792 29875097 ID=MsG0580026053.01.T01;Parent=MsG0580026053.01;Name=MsG0580026053.01.T01;_AED=0.46;_eAED=0.46;_QI=12|0.71|0.87|1|1|1|8|174|201
Chr5 exon 29875097 29875160 29875097 ID=MsG0580026053.01.T01:exon:33610;Parent=MsG0580026053.01.T01
Chr5 exon 29875235 29875293 29875235 ID=MsG0580026053.01.T01:exon:33611;Parent=MsG0580026053.01.T01
Chr5 exon 29875761 29875841 29875761 ID=MsG0580026053.01.T01:exon:33612;Parent=MsG0580026053.01.T01
Chr5 exon 29876057 29876128 29876057 ID=MsG0580026053.01.T01:exon:33613;Parent=MsG0580026053.01.T01
Chr5 exon 29876943 29877002 29876943 ID=MsG0580026053.01.T01:exon:33614;Parent=MsG0580026053.01.T01
Chr5 exon 29880436 29880507 29880436 ID=MsG0580026053.01.T01:exon:33615;Parent=MsG0580026053.01.T01
Chr5 exon 29880818 29880887 29880818 ID=MsG0580026053.01.T01:exon:33616;Parent=MsG0580026053.01.T01
Chr5 exon 29881479 29881792 29881479 ID=MsG0580026053.01.T01:exon:33617;Parent=MsG0580026053.01.T01
Chr5 five_prime_UTR 29875097 29875108 29875097 ID=MsG0580026053.01.T01:five_prime_utr;Parent=MsG0580026053.01.T01
Chr5 CDS 29875109 29875160 29875109 ID=MsG0580026053.01.T01:cds;Parent=MsG0580026053.01.T01
Chr5 CDS 29875235 29875293 29875235 ID=MsG0580026053.01.T01:cds;Parent=MsG0580026053.01.T01
Chr5 CDS 29875761 29875841 29875761 ID=MsG0580026053.01.T01:cds;Parent=MsG0580026053.01.T01
Chr5 CDS 29876057 29876128 29876057 ID=MsG0580026053.01.T01:cds;Parent=MsG0580026053.01.T01
Chr5 CDS 29876943 29877002 29876943 ID=MsG0580026053.01.T01:cds;Parent=MsG0580026053.01.T01
Chr5 CDS 29880436 29880507 29880436 ID=MsG0580026053.01.T01:cds;Parent=MsG0580026053.01.T01
Chr5 CDS 29880818 29880887 29880818 ID=MsG0580026053.01.T01:cds;Parent=MsG0580026053.01.T01
Chr5 CDS 29881479 29881618 29881479 ID=MsG0580026053.01.T01:cds;Parent=MsG0580026053.01.T01
Chr5 three_prime_UTR 29881619 29881792 29881619 ID=MsG0580026053.01.T01:three_prime_utr;Parent=MsG0580026053.01.T01
Gene Sequence

>MsG0580026053.01.T01

ATGACGATAAGTGGAGCCAAAATTTTCGAGTTGGTCATCGTAAATGGAATAGGTATCGTCGCCATCCTTTACTGTTACGGCACATTCTCCAATGTTACCCGCCACCTACAGTTGCTGTTGAATGGATCGCCCAAGTCCGTGGATCAGGCTGAGGGTGGTGAAGAAGAAGATGCTGATTCCACTGATGCTCAGTTGCTGTTGAAAGGATCGATCAATTCTGGGGATCAACCTAAAGGTGAAGATGCCGATTCCACTGATGCTCAGGTTTCTGGATTTCGAAGTGCTATTGCTATGGGTAACTCGCAACAAAAAGTGAATAGATTGAAAGCTGAAAGAAGACTACGAGCCGGTGGAGGACATAGTCGAGCTGAAGATGCTGATTCCGCTGATGCTCAGGACAATACAAATCATTCAAGATCGGTTATTAAGCACCCTGTACATGGAATAGACTTGATGCTTGAAATAAAAGCTGAAAGAGAATATACTGGCCGGTGGAGGTCAAAGTTCTTACTGAGAATTTGGCTGCGGAGGAGTATGGAGCCCGAGGAGGTCAAAGTTCTTACTGAGAATTTGGCTGAGGAGGTTTATTGTGTTGTTATTGTTTAA
Protein sequence

>MsG0580026053.01.T01

MTISGAKIFELVIVNGIGIVAILYCYGTFSNVTRHLQLLLNGSPKSVDQAEGGEEEDADSTDAQLLLKGSINSGDQPKGEDADSTDAQVSGFRSAIAMGNSQQKVNRLKAERRLRAGGGHSRAEDADSADAQDNTNHSRSVIKHPVHGIDLMLEIKAEREYTGRWRSKFLLRIWLRRSMEPEEVKVLTENLAEEVYCVVIV*