AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008112.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008112.01.T01 MTR_2g035810 99.038 208 2 0 16 223 78 285 9.69e-153 425
MsG0280008112.01.T01 MTR_3g081530 80.000 180 32 1 16 195 80 255 9.99e-105 305
MsG0280008112.01.T01 MTR_4g064813 94.375 160 8 1 63 222 312 470 4.27e-99 296
MsG0280008112.01.T01 MTR_7g074620 28.492 179 110 6 15 186 4 171 1.34e-13 68.9
MsG0280008112.01.T01 MTR_7g074620 28.492 179 110 6 15 186 114 281 2.85e-13 68.6
MsG0280008112.01.T01 MTR_7g074620 28.814 177 108 6 17 186 116 281 3.66e-13 67.8
MsG0280008112.01.T01 MTR_8g101470 41.026 78 40 2 17 90 126 201 1.98e-11 63.2
MsG0280008112.01.T01 MTR_8g101470 40.506 79 41 2 17 91 126 202 2.51e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008112.01.T01 AT2G32260 76.500 200 43 1 16 215 49 244 9.24e-110 317
MsG0280008112.01.T01 AT2G32260 76.500 200 43 1 16 215 98 293 2.61e-109 317
MsG0280008112.01.T01 AT2G38670 27.273 165 103 5 17 175 116 269 3.07e-13 68.6

Find 71 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGCTATTGGAAAATTTA+AGG 0.163999 2:-25596230 MsG0280008112.01.T01:CDS
CATATTCCTACCTTTGGATT+TGG 0.220095 2:-25594462 MsG0280008112.01.T01:three_prime_UTR
CTTATACAGGTTAAGGCTAT+TGG 0.232230 2:-25596241 MsG0280008112.01.T01:intron
TCCAACCATATTCCTACCTT+TGG 0.332225 2:-25594468 MsG0280008112.01.T01:three_prime_UTR
TATGGTAATGGTTCAGAATC+TGG 0.342345 2:+25594737 None:intergenic
TTGATCTAAAAGCTGAGATT+TGG 0.357938 2:-25594431 MsG0280008112.01.T01:three_prime_UTR
TTCGTATATGCAATGCAATA+TGG 0.370609 2:-25594679 MsG0280008112.01.T01:three_prime_UTR
CAAATCCAAAGGTAGGAATA+TGG 0.372660 2:+25594463 None:intergenic
TTGATTACCCACGGCACATC+TGG 0.373662 2:+25597814 None:intergenic
CCAGTATGTAATGCGTAATC+TGG 0.373754 2:-25596143 MsG0280008112.01.T01:CDS
TGCACTGTTGGAGAGAATCT+TGG 0.376766 2:+25594496 None:intergenic
GAGAATCTTGGGTTGGAACT+TGG 0.399226 2:+25594508 None:intergenic
ATATGCAATGCAATATGGTT+TGG 0.412593 2:-25594674 MsG0280008112.01.T01:three_prime_UTR
CCAGATTACGCATTACATAC+TGG 0.416241 2:+25596143 None:intergenic
AATGTGAAAATATGTTTGAT+TGG 0.429677 2:-25594330 None:intergenic
TGAAGAAGGATGCCACAAAA+TGG 0.436374 2:-25595047 MsG0280008112.01.T01:intron
GGAACAGTGAGAAGAATTGC+TGG 0.441857 2:-25595133 MsG0280008112.01.T01:CDS
AATGCAGATCGATTAGTTGC+TGG 0.449023 2:-25595085 MsG0280008112.01.T01:CDS
AGTTCAATTGCACTTGCTGC+AGG 0.456853 2:-25597855 MsG0280008112.01.T01:CDS
GCACTGTTGGAGAGAATCTT+GGG 0.457592 2:+25594497 None:intergenic
AAATTTCATCCTAACCAGTA+AGG 0.458045 2:-25598447 MsG0280008112.01.T01:CDS
CACAGAGATAGTTATGGTAA+TGG 0.463979 2:+25594725 None:intergenic
TCAATTGCACTTGCTGCAGG+TGG 0.466116 2:-25597852 MsG0280008112.01.T01:CDS
CAGTTACACAGAGATAGTTA+TGG 0.466530 2:+25594719 None:intergenic
AAAACTCATATCACTTTGAC+AGG 0.471887 2:+25594614 None:intergenic
ATCTCTTCTTTATGATGAGT+GGG 0.482968 2:-25594843 MsG0280008112.01.T01:CDS
TGTGCCGTGGGTAATCAATC+AGG 0.490691 2:-25597809 MsG0280008112.01.T01:CDS
GCAAGAGACTGTAGGAAAGA+AGG 0.492142 2:-25595882 MsG0280008112.01.T01:intron
AATTCAAATTCGAGGAGATA+TGG 0.492609 2:-25594538 MsG0280008112.01.T01:three_prime_UTR
TTTCTCGAGATGTTTGAAGA+AGG 0.505057 2:-25595061 MsG0280008112.01.T01:CDS
AATCTCTTCTTTATGATGAG+TGG 0.507907 2:-25594844 MsG0280008112.01.T01:CDS
TATGCTGATACAAGTGGAGC+TGG 0.511409 2:-25596563 MsG0280008112.01.T01:CDS
TCCAAAGGTAGGAATATGGT+TGG 0.540697 2:+25594467 None:intergenic
CATAGTTATGCTGATACAAG+TGG 0.557570 2:-25596569 MsG0280008112.01.T01:intron
TGCATCATGCAATCGTTGTA+CGG 0.558659 2:+25594573 None:intergenic
AATTTCATCCTAACCAGTAA+GGG 0.563317 2:-25598446 MsG0280008112.01.T01:CDS
GGATCGTGGTTATTCAAGAA+AGG 0.563355 2:-25596122 MsG0280008112.01.T01:CDS
GGTTGGACGGACTGCACTGT+TGG 0.568445 2:+25594484 None:intergenic
AAGGAAACAAAGAGGACTGA+AGG 0.570979 2:-25596211 MsG0280008112.01.T01:CDS
TGTTGGAGAGAATCTTGGGT+TGG 0.573339 2:+25594501 None:intergenic
CTGGGATGAACCGTACTGAA+TGG 0.573855 2:-25595114 MsG0280008112.01.T01:CDS
AGGTAACGAATTCAAATTCG+AGG 0.574904 2:-25594546 MsG0280008112.01.T01:three_prime_UTR
ATTTCATCCTAACCAGTAAG+GGG 0.579564 2:-25598445 MsG0280008112.01.T01:CDS
ATCTTCCATTGCACAAGACT+AGG 0.580708 2:+25594364 None:intergenic
TGGGATGAACCGTACTGAAT+GGG 0.582067 2:-25595113 MsG0280008112.01.T01:CDS
TATCATAATGAGAATCATCA+AGG 0.585536 2:-25596173 MsG0280008112.01.T01:CDS
AAGTTATTCCAGATGTGCCG+TGG 0.587410 2:-25597822 MsG0280008112.01.T01:CDS
AACTCCTGATTGATTACCCA+CGG 0.589451 2:+25597805 None:intergenic
CAATTGCACTTGCTGCAGGT+GGG 0.591235 2:-25597851 MsG0280008112.01.T01:CDS
AAGAAACAGCAAGAGACTGT+AGG 0.592810 2:-25595890 MsG0280008112.01.T01:CDS
GAAAAGACTGAGAATGAACA+TGG 0.595956 2:-25595939 MsG0280008112.01.T01:CDS
TGATACAAGTGGAGCTGGAA+AGG 0.599993 2:-25596558 MsG0280008112.01.T01:CDS
GCTAGGTGTTAGCTATGTCA+AGG 0.608221 2:-25596098 MsG0280008112.01.T01:intron
ATTGACTGTGCGGGTTGTAG+AGG 0.608347 2:-25594404 MsG0280008112.01.T01:three_prime_UTR
TACAATCCAAATCCAAAGGT+AGG 0.608904 2:+25594456 None:intergenic
TATGACCTAGTCTTGTGCAA+TGG 0.611097 2:-25594369 MsG0280008112.01.T01:three_prime_UTR
CAAGCATAAAATTGACTATG+TGG 0.611838 2:-25597776 MsG0280008112.01.T01:CDS
GAAAATTTAAGGAAACAAAG+AGG 0.614590 2:-25596219 MsG0280008112.01.T01:CDS
CAGAATTCAAGAACAGCTGA+AGG 0.615936 2:-25594879 MsG0280008112.01.T01:CDS
TTTCATCCTAACCAGTAAGG+GGG 0.617519 2:-25598444 MsG0280008112.01.T01:intron
GAACAGTGAGAAGAATTGCT+GGG 0.618852 2:-25595132 MsG0280008112.01.T01:CDS
TTTGGCTGCATTGACTGTGC+GGG 0.621001 2:-25594413 MsG0280008112.01.T01:three_prime_UTR
GGTTATTCAAGAAAGGAGCT+AGG 0.624474 2:-25596115 MsG0280008112.01.T01:CDS
AAGGTACAATCCAAATCCAA+AGG 0.626057 2:+25594452 None:intergenic
AAGGTAGGAATATGGTTGGA+CGG 0.628552 2:+25594471 None:intergenic
ATTTGGCTGCATTGACTGTG+CGG 0.645343 2:-25594414 MsG0280008112.01.T01:three_prime_UTR
GATTCTCATTATGATATCAG+AGG 0.655348 2:+25596180 None:intergenic
AGTTATTCCAGATGTGCCGT+GGG 0.663969 2:-25597821 MsG0280008112.01.T01:CDS
AAAAGACTGAGAATGAACAT+GGG 0.666992 2:-25595938 MsG0280008112.01.T01:CDS
GTAATGCGTAATCTGGATCG+TGG 0.679784 2:-25596136 MsG0280008112.01.T01:CDS
ACGATTGCATGATGCAACAG+AGG 0.705316 2:-25594566 MsG0280008112.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATGACTTATTTAAAT+TGG - Chr2:25594826-25594845 MsG0280008112.01.T01:CDS 10.0%
!! AAAGTTTAAACAAATAAGAA+AGG + Chr2:25596404-25596423 None:intergenic 15.0%
!! AAATACATAGTTTAATTGTT+TGG - Chr2:25597035-25597054 MsG0280008112.01.T01:intron 15.0%
!! TCATATACAACTAAATTAAA+AGG + Chr2:25596287-25596306 None:intergenic 15.0%
!! TTTAATTCCAGTATAAAAAA+AGG + Chr2:25595448-25595467 None:intergenic 15.0%
!!! AACAAAAGAAAACAAATTTT+TGG + Chr2:25594768-25594787 None:intergenic 15.0%
!!! TATTTCATCTAGTTATATTT+TGG - Chr2:25594725-25594744 MsG0280008112.01.T01:three_prime_UTR 15.0%
!! AAATAGAATTTATAGGACAT+GGG - Chr2:25597250-25597269 MsG0280008112.01.T01:intron 20.0%
!! AAATATATAGTCAATCATGT+AGG + Chr2:25595630-25595649 None:intergenic 20.0%
!! AACCTGTATAAGAAATTAAT+AGG + Chr2:25596534-25596553 None:intergenic 20.0%
!! ACTTTGTTGAAAATGTTATT+TGG - Chr2:25595696-25595715 MsG0280008112.01.T01:intron 20.0%
!! ATAAAAAAGAGAATTATAGC+TGG + Chr2:25595070-25595089 None:intergenic 20.0%
!! ATGACCTAAATAGAATTTAT+AGG - Chr2:25597243-25597262 MsG0280008112.01.T01:intron 20.0%
!! ATGTCCTATAAATTCTATTT+AGG + Chr2:25597250-25597269 None:intergenic 20.0%
!! TAAATAGAATTTATAGGACA+TGG - Chr2:25597249-25597268 MsG0280008112.01.T01:intron 20.0%
!! TAAGTAAATAGAAAATGAGA+AGG + Chr2:25594882-25594901 None:intergenic 20.0%
!! TAATATAGTAGTAGTGATAA+TGG + Chr2:25596039-25596058 None:intergenic 20.0%
!! TGAACTATCTTATTATAGAT+CGG - Chr2:25596939-25596958 MsG0280008112.01.T01:intron 20.0%
!! TTAATTTCTTATACAGGTTA+AGG - Chr2:25596535-25596554 MsG0280008112.01.T01:intron 20.0%
!!! ATATTTTTAAGTGAATAGTG+TGG - Chr2:25595644-25595663 MsG0280008112.01.T01:intron 20.0%
!!! ATTACTTCCTTTTTTTATAC+TGG - Chr2:25595438-25595457 MsG0280008112.01.T01:intron 20.0%
!!! CATCTTAAAGCTTATTTTTA+GGG + Chr2:25597779-25597798 None:intergenic 20.0%
!!! GAAACAAGAAAACTTTTAAA+AGG - Chr2:25595223-25595242 MsG0280008112.01.T01:intron 20.0%
!!! TCATCTTAAAGCTTATTTTT+AGG + Chr2:25597780-25597799 None:intergenic 20.0%
! AAAAAATATCATGTGAGAAG+AGG + Chr2:25595586-25595605 None:intergenic 25.0%
! AAAAATATCATGTGAGAAGA+GGG + Chr2:25595585-25595604 None:intergenic 25.0%
! AAAAGTAAACACGAGATTAT+AGG - Chr2:25594506-25594525 MsG0280008112.01.T01:three_prime_UTR 25.0%
! AACTAGATGAAATAACATGA+CGG + Chr2:25594719-25594738 None:intergenic 25.0%
! AATGAATTACTAGGAAATGA+TGG - Chr2:25597503-25597522 MsG0280008112.01.T01:intron 25.0%
! ATAGTGTCTTAATAATGCAA+AGG + Chr2:25597601-25597620 None:intergenic 25.0%
! ATCATTTCCTAGTAATTCAT+TGG + Chr2:25597504-25597523 None:intergenic 25.0%
! ATCCACAAAGTTCTTATATA+TGG - Chr2:25596155-25596174 MsG0280008112.01.T01:CDS 25.0%
! ATTATGTCTGGTCAAAATAT+TGG - Chr2:25594651-25594670 MsG0280008112.01.T01:three_prime_UTR 25.0%
! CAAATGTGTATCAAAAAACA+TGG + Chr2:25597442-25597461 None:intergenic 25.0%
! CTATGGTAACAAAATAACAA+AGG + Chr2:25596199-25596218 None:intergenic 25.0%
! GAAAATTTAAGGAAACAAAG+AGG - Chr2:25596564-25596583 MsG0280008112.01.T01:CDS 25.0%
! GATCTATAATAAGATAGTTC+AGG + Chr2:25596940-25596959 None:intergenic 25.0%
! TAAGGCTATTGGAAAATTTA+AGG - Chr2:25596553-25596572 MsG0280008112.01.T01:CDS 25.0%
! TAATAGATTGATGAAGTGAA+CGG - Chr2:25594468-25594487 MsG0280008112.01.T01:three_prime_UTR 25.0%
! TAATCAAAGAGACAAATTGT+TGG + Chr2:25596358-25596377 None:intergenic 25.0%
! TATCATAATGAGAATCATCA+AGG - Chr2:25596610-25596629 MsG0280008112.01.T01:intron 25.0%
! TCAGATGCCATATAAAAATA+TGG + Chr2:25597323-25597342 None:intergenic 25.0%
! TCTATTTAGGTCATATTTCT+AGG + Chr2:25597237-25597256 None:intergenic 25.0%
! TGCCTATTAATTTCTTATAC+AGG - Chr2:25596529-25596548 MsG0280008112.01.T01:intron 25.0%
! TTACTTATTTGCTTTCACTA+TGG - Chr2:25594895-25594914 MsG0280008112.01.T01:CDS 25.0%
!! ATACATGATCTCTTATTTGT+AGG - Chr2:25596820-25596839 MsG0280008112.01.T01:intron 25.0%
!! TTATAAGCGTTCTAAATTTG+TGG - Chr2:25595091-25595110 MsG0280008112.01.T01:CDS 25.0%
!!! CTTCTCACATGATATTTTTT+GGG - Chr2:25595586-25595605 MsG0280008112.01.T01:intron 25.0%
!!! GCGTAATCCATATTTTTATA+TGG - Chr2:25597313-25597332 MsG0280008112.01.T01:intron 25.0%
!!! TATCCTCTTTTAATTGCTTA+CGG - Chr2:25594680-25594699 MsG0280008112.01.T01:three_prime_UTR 25.0%
!!! TCATCTAGTTATATTTTGGA+GGG - Chr2:25594729-25594748 MsG0280008112.01.T01:three_prime_UTR 25.0%
!!! TCTTCTCACATGATATTTTT+TGG - Chr2:25595585-25595604 MsG0280008112.01.T01:intron 25.0%
!!! TTCATCTAGTTATATTTTGG+AGG - Chr2:25594728-25594747 MsG0280008112.01.T01:three_prime_UTR 25.0%
AAAACTCATATCACTTTGAC+AGG + Chr2:25598172-25598191 None:intergenic 30.0%
AAAAGACTGAGAATGAACAT+GGG - Chr2:25596845-25596864 MsG0280008112.01.T01:intron 30.0%
AAATTTCATCCTAACCAGTA+AGG - Chr2:25594336-25594355 MsG0280008112.01.T01:three_prime_UTR 30.0%
AAGATCATAACAGAGGAAAT+AGG + Chr2:25595332-25595351 None:intergenic 30.0%
AATAGGCATAAGATCATCAA+TGG + Chr2:25596517-25596536 None:intergenic 30.0%
AATCTCTTCTTTATGATGAG+TGG - Chr2:25597939-25597958 MsG0280008112.01.T01:intron 30.0%
AATTCAAATTCGAGGAGATA+TGG - Chr2:25598245-25598264 MsG0280008112.01.T01:intron 30.0%
AATTTCATCCTAACCAGTAA+GGG - Chr2:25594337-25594356 MsG0280008112.01.T01:three_prime_UTR 30.0%
ACAGAACAATGAAACACATA+TGG + Chr2:25596746-25596765 None:intergenic 30.0%
ACTAGATGAAATAACATGAC+GGG + Chr2:25594718-25594737 None:intergenic 30.0%
AGGAAATAGGAGACAAAAAA+GGG + Chr2:25595319-25595338 None:intergenic 30.0%
AGGTCTAATATACAGTACTA+TGG + Chr2:25594862-25594881 None:intergenic 30.0%
AGTTATGTGCAAACTATTCA+TGG - Chr2:25595756-25595775 MsG0280008112.01.T01:intron 30.0%
ATATGCAATGCAATATGGTT+TGG - Chr2:25598109-25598128 MsG0280008112.01.T01:intron 30.0%
ATCTCTTCTTTATGATGAGT+GGG - Chr2:25597940-25597959 MsG0280008112.01.T01:intron 30.0%
ATTGAACACAAACTAGTGAT+AGG + Chr2:25597086-25597105 None:intergenic 30.0%
CAAACTCAGATAATTCTAAC+AGG + Chr2:25597127-25597146 None:intergenic 30.0%
CAAGCATAAAATTGACTATG+TGG - Chr2:25595007-25595026 MsG0280008112.01.T01:intron 30.0%
CAGAACAATGAAACACATAT+GGG + Chr2:25596745-25596764 None:intergenic 30.0%
CATACTTCTATTCAATCTGT+GGG - Chr2:25596094-25596113 MsG0280008112.01.T01:intron 30.0%
CTGTCATTATGTATCAGAAT+AGG - Chr2:25596457-25596476 MsG0280008112.01.T01:intron 30.0%
CTTTAGTAGTCATTCAATTC+CGG + Chr2:25595495-25595514 None:intergenic 30.0%
GAAAACAAAGATCATAACAG+AGG + Chr2:25595339-25595358 None:intergenic 30.0%
GACCATATATAAGAACTTTG+TGG + Chr2:25596160-25596179 None:intergenic 30.0%
GAGTCTATCTTATGTTATTC+TGG - Chr2:25597341-25597360 MsG0280008112.01.T01:intron 30.0%
GATTCTCATTATGATATCAG+AGG + Chr2:25596606-25596625 None:intergenic 30.0%
TAACTTCTGATTGACTGAAT+TGG - Chr2:25597844-25597863 MsG0280008112.01.T01:CDS 30.0%
TATCTTATTATAGATCGGCA+AGG - Chr2:25596944-25596963 MsG0280008112.01.T01:intron 30.0%
TATTTGCTTTCACTATGGAT+TGG - Chr2:25594900-25594919 MsG0280008112.01.T01:intron 30.0%
TCATACTTCTATTCAATCTG+TGG - Chr2:25596093-25596112 MsG0280008112.01.T01:intron 30.0%
TCATAGTAGCTTCTTAAGTT+AGG - Chr2:25595883-25595902 MsG0280008112.01.T01:CDS 30.0%
TGCGAGAAAGTAAACAAATA+CGG + Chr2:25596779-25596798 None:intergenic 30.0%
TGTTAAACTCTGTTCTTCAT+AGG - Chr2:25595824-25595843 MsG0280008112.01.T01:intron 30.0%
TGTTATATTGCCTCAGTAAA+GGG - Chr2:25595786-25595805 MsG0280008112.01.T01:intron 30.0%
TTCGTATATGCAATGCAATA+TGG - Chr2:25598104-25598123 MsG0280008112.01.T01:intron 30.0%
TTGATCTAAAAGCTGAGATT+TGG - Chr2:25598352-25598371 MsG0280008112.01.T01:intron 30.0%
! AAATCTCAGCTTTTAGATCA+AGG + Chr2:25598353-25598372 None:intergenic 30.0%
! ATAACCACTCGTAAGATTTT+AGG + Chr2:25594795-25594814 None:intergenic 30.0%
! ATACTCCAAATGTTCAGTTT+TGG - Chr2:25597180-25597199 MsG0280008112.01.T01:intron 30.0%
! ATCTTTAAAGATCGTGTTTG+CGG - Chr2:25594569-25594588 MsG0280008112.01.T01:three_prime_UTR 30.0%
! ATGGAAGCTTGAAAATTTTG+AGG + Chr2:25596498-25596517 None:intergenic 30.0%
! ATTTGGAGTATGAACAAATG+TGG + Chr2:25597171-25597190 None:intergenic 30.0%
! GTCATTTGTTGAATGAGTAT+AGG - Chr2:25595905-25595924 MsG0280008112.01.T01:CDS 30.0%
! TACTCCAAATGTTCAGTTTT+GGG - Chr2:25597181-25597200 MsG0280008112.01.T01:intron 30.0%
! TTCGTAATGTCAAAGTACTT+TGG - Chr2:25594618-25594637 MsG0280008112.01.T01:three_prime_UTR 30.0%
! TTTGGAGTATGAACAAATGT+GGG + Chr2:25597170-25597189 None:intergenic 30.0%
!! AATAGTCAACAGAAGTATCA+TGG + Chr2:25594440-25594459 None:intergenic 30.0%
!! ATATGAGTTTTGATCTAACG+AGG - Chr2:25598181-25598200 MsG0280008112.01.T01:intron 30.0%
!! TATGAGTTTTGATCTAACGA+GGG - Chr2:25598182-25598201 MsG0280008112.01.T01:intron 30.0%
!!! ATGATCTTTGTTTTCTGGTT+TGG - Chr2:25595344-25595363 MsG0280008112.01.T01:intron 30.0%
!!! CTGTTATGATCTTTGTTTTC+TGG - Chr2:25595339-25595358 MsG0280008112.01.T01:intron 30.0%
!!! CTTAAAGCTTATTTTTAGGG+AGG + Chr2:25597776-25597795 None:intergenic 30.0%
AAAGAGAATTATAGCTGGAC+TGG + Chr2:25595065-25595084 None:intergenic 35.0%
AAATGTGAGTGCAGTATTAG+AGG + Chr2:25597372-25597391 None:intergenic 35.0%
AACTCCTAAAATCTTACGAG+TGG - Chr2:25594788-25594807 MsG0280008112.01.T01:CDS 35.0%
AAGAGAATTATAGCTGGACT+GGG + Chr2:25595064-25595083 None:intergenic 35.0%
AAGGTACAATCCAAATCCAA+AGG + Chr2:25598334-25598353 None:intergenic 35.0%
AATTGTTTGGATGCGTTTCT+TGG - Chr2:25597048-25597067 MsG0280008112.01.T01:intron 35.0%
ACAAATGTGGGTGAAATAAC+AGG + Chr2:25597158-25597177 None:intergenic 35.0%
AGAACAGAGTTTAACACGAA+AGG + Chr2:25595820-25595839 None:intergenic 35.0%
AGGTAACGAATTCAAATTCG+AGG - Chr2:25598237-25598256 MsG0280008112.01.T01:intron 35.0%
ATTAAGATGAATGACACCAG+AGG + Chr2:25596331-25596350 None:intergenic 35.0%
ATTGTTTGGATGCGTTTCTT+GGG - Chr2:25597049-25597068 MsG0280008112.01.T01:intron 35.0%
ATTTCATCCTAACCAGTAAG+GGG - Chr2:25594338-25594357 MsG0280008112.01.T01:three_prime_UTR 35.0%
CAAAAAAGGGGAAACAGAAA+AGG + Chr2:25595306-25595325 None:intergenic 35.0%
CAAACCCAAAACTGAACATT+TGG + Chr2:25597188-25597207 None:intergenic 35.0%
CAAATCCAAAGGTAGGAATA+TGG + Chr2:25598323-25598342 None:intergenic 35.0%
CAAATGTGGGTGAAATAACA+GGG + Chr2:25597157-25597176 None:intergenic 35.0%
CACAGAGATAGTTATGGTAA+TGG + Chr2:25598061-25598080 None:intergenic 35.0%
CACTTGTATCAGCATAACTA+TGG + Chr2:25596216-25596235 None:intergenic 35.0%
CAGTTACACAGAGATAGTTA+TGG + Chr2:25598067-25598086 None:intergenic 35.0%
CATAGTTATGCTGATACAAG+TGG - Chr2:25596214-25596233 MsG0280008112.01.T01:CDS 35.0%
CATATTCCTACCTTTGGATT+TGG - Chr2:25598321-25598340 MsG0280008112.01.T01:intron 35.0%
CTGTTATATTGCCTCAGTAA+AGG - Chr2:25595785-25595804 MsG0280008112.01.T01:intron 35.0%
CTTATACAGGTTAAGGCTAT+TGG - Chr2:25596542-25596561 MsG0280008112.01.T01:intron 35.0%
GAAAAGACTGAGAATGAACA+TGG - Chr2:25596844-25596863 MsG0280008112.01.T01:intron 35.0%
GAGGAAATAGGAGACAAAAA+AGG + Chr2:25595320-25595339 None:intergenic 35.0%
GGAAATAGGAGACAAAAAAG+GGG + Chr2:25595318-25595337 None:intergenic 35.0%
GTTATATTGCCTCAGTAAAG+GGG - Chr2:25595787-25595806 MsG0280008112.01.T01:intron 35.0%
TACAATCCAAATCCAAAGGT+AGG + Chr2:25598330-25598349 None:intergenic 35.0%
TACTTCAAGAACCTTAAAGC+CGG - Chr2:25595473-25595492 MsG0280008112.01.T01:intron 35.0%
TATCGTGATCAGAAACCATT+TGG + Chr2:25594409-25594428 None:intergenic 35.0%
TCCTCAGTATATTTCTTGTC+TGG - Chr2:25596432-25596451 MsG0280008112.01.T01:intron 35.0%
TTAAGATGAATGACACCAGA+GGG + Chr2:25596330-25596349 None:intergenic 35.0%
TTATATTGCCTCAGTAAAGG+GGG - Chr2:25595788-25595807 MsG0280008112.01.T01:intron 35.0%
TTCTGATTGACTGAATTGGT+TGG - Chr2:25597848-25597867 MsG0280008112.01.T01:CDS 35.0%
TTTCTCGAGATGTTTGAAGA+AGG - Chr2:25597722-25597741 MsG0280008112.01.T01:intron 35.0%
! CATTTTCAACCCATTCAGTA+CGG + Chr2:25597682-25597701 None:intergenic 35.0%
! GCAAACACGATCTTTAAAGA+TGG + Chr2:25594570-25594589 None:intergenic 35.0%
! GTTGGTTTACTGATATACCA+GGG - Chr2:25597866-25597885 MsG0280008112.01.T01:intron 35.0%
!! GTCATATTTCTAGGCAATGT+GGG + Chr2:25597228-25597247 None:intergenic 35.0%
!! TATGGTAATGGTTCAGAATC+TGG + Chr2:25598049-25598068 None:intergenic 35.0%
!!! ATAGCTTTTGGAGTTGAGTT+AGG - Chr2:25597291-25597310 MsG0280008112.01.T01:intron 35.0%
AACTCCTGATTGATTACCCA+CGG + Chr2:25594981-25595000 None:intergenic 40.0%
AAGAAACAGCAAGAGACTGT+AGG - Chr2:25596893-25596912 MsG0280008112.01.T01:intron 40.0%
AAGCCAAACTATGTGCAGAT+AGG - Chr2:25597629-25597648 MsG0280008112.01.T01:intron 40.0%
AAGGAAACAAAGAGGACTGA+AGG - Chr2:25596572-25596591 MsG0280008112.01.T01:intron 40.0%
AAGGTAGGAATATGGTTGGA+CGG + Chr2:25598315-25598334 None:intergenic 40.0%
ACACACCTTAATGCTTACCA+CGG + Chr2:25597413-25597432 None:intergenic 40.0%
ACACTCAAGACTGTAACATC+CGG + Chr2:25597473-25597492 None:intergenic 40.0%
ACTCCAAAAGCTATCTCACA+AGG + Chr2:25597285-25597304 None:intergenic 40.0%
ATACACATTTGCCTACGTTC+CGG - Chr2:25597451-25597470 MsG0280008112.01.T01:intron 40.0%
ATCTTCCATTGCACAAGACT+AGG + Chr2:25598422-25598441 None:intergenic 40.0%
ATGTTACAGTCTTGAGTGTG+CGG - Chr2:25597474-25597493 MsG0280008112.01.T01:intron 40.0%
CACTGTAGTTGTTGTGTCTA+AGG + Chr2:25595169-25595188 None:intergenic 40.0%
CACTTTGTTGGGTAACCAAA+TGG - Chr2:25594391-25594410 MsG0280008112.01.T01:three_prime_UTR 40.0%
CAGAATTCAAGAACAGCTGA+AGG - Chr2:25597904-25597923 MsG0280008112.01.T01:intron 40.0%
CAGCCGTAAGCAATTAAAAG+AGG + Chr2:25594686-25594705 None:intergenic 40.0%
CATATGGGTAAGCAAAACAG+AGG + Chr2:25596730-25596749 None:intergenic 40.0%
CATGGGACTTAAAAAGTTGC+AGG - Chr2:25596862-25596881 MsG0280008112.01.T01:intron 40.0%
CCAGATTACGCATTACATAC+TGG + Chr2:25596643-25596662 None:intergenic 40.0%
CCAGTATGTAATGCGTAATC+TGG - Chr2:25596640-25596659 MsG0280008112.01.T01:intron 40.0%
GAACAGTGAGAAGAATTGCT+GGG - Chr2:25597651-25597670 MsG0280008112.01.T01:intron 40.0%
GCCAGACAAGAAATATACTG+AGG + Chr2:25596436-25596455 None:intergenic 40.0%
GGATCGTGGTTATTCAAGAA+AGG - Chr2:25596661-25596680 MsG0280008112.01.T01:intron 40.0%
GGTTATTCAAGAAAGGAGCT+AGG - Chr2:25596668-25596687 MsG0280008112.01.T01:intron 40.0%
GTCATTCAATTCCGGCTTTA+AGG + Chr2:25595487-25595506 None:intergenic 40.0%
GTTCCTATCTGCACATAGTT+TGG + Chr2:25597635-25597654 None:intergenic 40.0%
TCCAAAGGTAGGAATATGGT+TGG + Chr2:25598319-25598338 None:intergenic 40.0%
TCCAACCATATTCCTACCTT+TGG - Chr2:25598315-25598334 MsG0280008112.01.T01:intron 40.0%
TGAAGAAGGATGCCACAAAA+TGG - Chr2:25597736-25597755 MsG0280008112.01.T01:intron 40.0%
TGCATCATGCAATCGTTGTA+CGG + Chr2:25598213-25598232 None:intergenic 40.0%
TGTTTACTTTCTCGCATGCT+GGG - Chr2:25596783-25596802 MsG0280008112.01.T01:intron 40.0%
TTGTTTACTTTCTCGCATGC+TGG - Chr2:25596782-25596801 MsG0280008112.01.T01:intron 40.0%
TTTCATCCTAACCAGTAAGG+GGG - Chr2:25594339-25594358 MsG0280008112.01.T01:three_prime_UTR 40.0%
! AATGCAGATCGATTAGTTGC+TGG - Chr2:25597698-25597717 MsG0280008112.01.T01:intron 40.0%
! AATTATAGCTGGACTGGGAT+TGG + Chr2:25595059-25595078 None:intergenic 40.0%
! AGAGAGATCCAACCATTTTG+TGG + Chr2:25597751-25597770 None:intergenic 40.0%
! ATAAAACCCCCTTACTGGTT+AGG + Chr2:25594348-25594367 None:intergenic 40.0%
! TCACCTTGTGAGATAGCTTT+TGG - Chr2:25597279-25597298 MsG0280008112.01.T01:intron 40.0%
!! ACTGGGATTGGTTGATCTTA+CGG + Chr2:25595047-25595066 None:intergenic 40.0%
!! CTTTTAATTGCTTACGGCTG+TGG - Chr2:25594686-25594705 MsG0280008112.01.T01:three_prime_UTR 40.0%
!! GGTCATATTTCTAGGCAATG+TGG + Chr2:25597229-25597248 None:intergenic 40.0%
!! GGTTGGTTTACTGATATACC+AGG - Chr2:25597865-25597884 MsG0280008112.01.T01:intron 40.0%
!! TATGACCTAGTCTTGTGCAA+TGG - Chr2:25598414-25598433 MsG0280008112.01.T01:intron 40.0%
!!! GTTCAGTTTTGGGTTTGAGA+GGG - Chr2:25597191-25597210 MsG0280008112.01.T01:intron 40.0%
!!! TGTTCAGTTTTGGGTTTGAG+AGG - Chr2:25597190-25597209 MsG0280008112.01.T01:intron 40.0%
AAGTTATTCCAGATGTGCCG+TGG - Chr2:25594961-25594980 MsG0280008112.01.T01:intron 45.0%
ACGATTGCATGATGCAACAG+AGG - Chr2:25598217-25598236 MsG0280008112.01.T01:intron 45.0%
AGATCGTGTTTGCGGATAAC+TGG - Chr2:25594577-25594596 MsG0280008112.01.T01:three_prime_UTR 45.0%
AGTTATTCCAGATGTGCCGT+GGG - Chr2:25594962-25594981 MsG0280008112.01.T01:intron 45.0%
ATAGACGTCGCTCACTTTGT+TGG - Chr2:25594379-25594398 MsG0280008112.01.T01:three_prime_UTR 45.0%
ATGTCCCGTGGTAAGCATTA+AGG - Chr2:25597405-25597424 MsG0280008112.01.T01:intron 45.0%
CACACCTTAATGCTTACCAC+GGG + Chr2:25597412-25597431 None:intergenic 45.0%
CGGCAGACCAATGAATTACT+AGG - Chr2:25597494-25597513 MsG0280008112.01.T01:intron 45.0%
GAAGGATGCCACAAAATGGT+TGG - Chr2:25597740-25597759 MsG0280008112.01.T01:intron 45.0%
GATGAAGTGAACGGTGAGAT+TGG - Chr2:25594477-25594496 MsG0280008112.01.T01:three_prime_UTR 45.0%
GCAAGAGACTGTAGGAAAGA+AGG - Chr2:25596901-25596920 MsG0280008112.01.T01:intron 45.0%
GCACTGTTGGAGAGAATCTT+GGG + Chr2:25598289-25598308 None:intergenic 45.0%
GCTAGGTGTTAGCTATGTCA+AGG - Chr2:25596685-25596704 MsG0280008112.01.T01:intron 45.0%
GGAACAGTGAGAAGAATTGC+TGG - Chr2:25597650-25597669 MsG0280008112.01.T01:intron 45.0%
GGAGAATAAAACCCCCTTAC+TGG + Chr2:25594353-25594372 None:intergenic 45.0%
GGCGTCTTTCTGATTATGTC+TGG - Chr2:25594639-25594658 MsG0280008112.01.T01:three_prime_UTR 45.0%
GTAATGCGTAATCTGGATCG+TGG - Chr2:25596647-25596666 MsG0280008112.01.T01:intron 45.0%
GTGAGCGACGTCTATGATAA+CGG + Chr2:25594374-25594393 None:intergenic 45.0%
TAGACGTCGCTCACTTTGTT+GGG - Chr2:25594380-25594399 MsG0280008112.01.T01:three_prime_UTR 45.0%
TATGCTGATACAAGTGGAGC+TGG - Chr2:25596220-25596239 MsG0280008112.01.T01:CDS 45.0%
TGATACAAGTGGAGCTGGAA+AGG - Chr2:25596225-25596244 MsG0280008112.01.T01:CDS 45.0%
TGCACTGTTGGAGAGAATCT+TGG + Chr2:25598290-25598309 None:intergenic 45.0%
TGGGATGAACCGTACTGAAT+GGG - Chr2:25597670-25597689 MsG0280008112.01.T01:intron 45.0%
TGTGCAAACTATTCATGGCG+AGG - Chr2:25595761-25595780 MsG0280008112.01.T01:intron 45.0%
TGTTGGAGAGAATCTTGGGT+TGG + Chr2:25598285-25598304 None:intergenic 45.0%
! AGTTCAATTGCACTTGCTGC+AGG - Chr2:25594928-25594947 MsG0280008112.01.T01:intron 45.0%
!! ATTTGGCTGCATTGACTGTG+CGG - Chr2:25598369-25598388 MsG0280008112.01.T01:intron 45.0%
!! GAGAATCTTGGGTTGGAACT+TGG + Chr2:25598278-25598297 None:intergenic 45.0%
!!! TGTTTTTTCTTCCCACCCTC+TGG - Chr2:25596312-25596331 MsG0280008112.01.T01:intron 45.0%
!! CTATTAATAAAAAATATTAT+TGG + Chr2:25596980-25596999 None:intergenic 5.0%
!!! AATATAATAGTATTTTAATT+TGG - Chr2:25595246-25595265 MsG0280008112.01.T01:intron 5.0%
AGATGAATGACACCAGAGGG+TGG + Chr2:25596327-25596346 None:intergenic 50.0%
ATTGCTTACGGCTGTGGAGT+AGG - Chr2:25594692-25594711 MsG0280008112.01.T01:three_prime_UTR 50.0%
CTGGGATGAACCGTACTGAA+TGG - Chr2:25597669-25597688 MsG0280008112.01.T01:intron 50.0%
GACTGTAACATCCGGAACGT+AGG + Chr2:25597465-25597484 None:intergenic 50.0%
GATGAATGACACCAGAGGGT+GGG + Chr2:25596326-25596345 None:intergenic 50.0%
GGTAAGCAAAACAGAGGAGC+TGG + Chr2:25596724-25596743 None:intergenic 50.0%
TCGTGTTTGCGGATAACTGG+CGG - Chr2:25594580-25594599 MsG0280008112.01.T01:three_prime_UTR 50.0%
TGTGCCGTGGGTAATCAATC+AGG - Chr2:25594974-25594993 MsG0280008112.01.T01:intron 50.0%
TGTGTGTGTATGTGCACGTG+CGG + Chr2:25595396-25595415 None:intergenic 50.0%
TTACTTTCTCGCATGCTGGG+AGG - Chr2:25596786-25596805 MsG0280008112.01.T01:intron 50.0%
TTGATTACCCACGGCACATC+TGG + Chr2:25594972-25594991 None:intergenic 50.0%
! ATTGACTGTGCGGGTTGTAG+AGG - Chr2:25598379-25598398 MsG0280008112.01.T01:intron 50.0%
! CAATTGCACTTGCTGCAGGT+GGG - Chr2:25594932-25594951 MsG0280008112.01.T01:intron 50.0%
! TCAATTGCACTTGCTGCAGG+TGG - Chr2:25594931-25594950 MsG0280008112.01.T01:intron 50.0%
! TGTCTCTGATTGCTGTTCCC+TGG + Chr2:25597886-25597905 None:intergenic 50.0%
! TTCATGCTCTAGATGTCCCG+TGG - Chr2:25597393-25597412 MsG0280008112.01.T01:intron 50.0%
!! TTTGGCTGCATTGACTGTGC+GGG - Chr2:25598370-25598389 MsG0280008112.01.T01:intron 50.0%
GGATAACGCCCCCTTTACTG+AGG + Chr2:25595799-25595818 None:intergenic 55.0%
!! GGTTGGACGGACTGCACTGT+TGG + Chr2:25598302-25598321 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 25594331 25598474 25594331 ID=MsG0280008112.01;Name=MsG0280008112.01
Chr2 mRNA 25594331 25598474 25594331 ID=MsG0280008112.01.T01;Parent=MsG0280008112.01;Name=MsG0280008112.01.T01;_AED=0.47;_eAED=0.49;_QI=0|0.83|0.71|1|0.83|0.85|7|453|223
Chr2 exon 25594331 25594918 25594331 ID=MsG0280008112.01.T01:exon:14087;Parent=MsG0280008112.01.T01
Chr2 exon 25595048 25595158 25595048 ID=MsG0280008112.01.T01:exon:14086;Parent=MsG0280008112.01.T01
Chr2 exon 25595883 25595963 25595883 ID=MsG0280008112.01.T01:exon:14085;Parent=MsG0280008112.01.T01
Chr2 exon 25596099 25596254 25596099 ID=MsG0280008112.01.T01:exon:14084;Parent=MsG0280008112.01.T01
Chr2 exon 25596544 25596586 25596544 ID=MsG0280008112.01.T01:exon:14083;Parent=MsG0280008112.01.T01
Chr2 exon 25597760 25597875 25597760 ID=MsG0280008112.01.T01:exon:14082;Parent=MsG0280008112.01.T01
Chr2 exon 25598445 25598474 25598445 ID=MsG0280008112.01.T01:exon:14081;Parent=MsG0280008112.01.T01
Chr2 CDS 25598445 25598474 25598445 ID=MsG0280008112.01.T01:cds;Parent=MsG0280008112.01.T01
Chr2 CDS 25597760 25597875 25597760 ID=MsG0280008112.01.T01:cds;Parent=MsG0280008112.01.T01
Chr2 CDS 25596544 25596586 25596544 ID=MsG0280008112.01.T01:cds;Parent=MsG0280008112.01.T01
Chr2 CDS 25596099 25596254 25596099 ID=MsG0280008112.01.T01:cds;Parent=MsG0280008112.01.T01
Chr2 CDS 25595883 25595963 25595883 ID=MsG0280008112.01.T01:cds;Parent=MsG0280008112.01.T01
Chr2 CDS 25595048 25595158 25595048 ID=MsG0280008112.01.T01:cds;Parent=MsG0280008112.01.T01
Chr2 CDS 25594784 25594918 25594784 ID=MsG0280008112.01.T01:cds;Parent=MsG0280008112.01.T01
Chr2 three_prime_UTR 25594331 25594783 25594331 ID=MsG0280008112.01.T01:three_prime_utr;Parent=MsG0280008112.01.T01
Gene Sequence

>MsG0280008112.01.T01

ATGAAAAATTTCATCCTAACCAGTAAGGGGTTCAATTGCACTTGCTGCAGGTGGGTTGATGAAGTTATTCCAGATGTGCCGTGGGTAATCAATCAGGAGTTCATTGACAAGCATAAAATTGACTATGTGGCACATGATGCTCTTCCTTATGCTGATACAAGTGGAGCTGGAAAGGATGTCTATGAATTTGTTAAGGCTATTGGAAAATTTAAGGAAACAAAGAGGACTGAAGGAATTTCTACCTCTGATATCATAATGAGAATCATCAAGGATTACAACCAGTATGTAATGCGTAATCTGGATCGTGGTTATTCAAGAAAGGAGCTAGGTGTTAGCTATGTCAAGGAGAAAAGACTGAGAATGAACATGGGACTTAAAAAGTTGCAGGAGAGAGTCAAGAAACAGCAAGAGACTGTAGGAAAGAAGATAGGAACAGTGAGAAGAATTGCTGGGATGAACCGTACTGAATGGGTTGAAAATGCAGATCGATTAGTTGCTGGATTTCTCGAGATGTTTGAAGAAGGATGCCACAAAATGGGAACAGCAATCAGAGACAGAATTCAAGAACAGCTGAAGGCACAACAGCTAAAATCTCTTCTTTATGATGAGTGGGATGATGACGTTGACGACGAATTCTATGAAGATGAATCTGTAGAATACTACAGCGACTAA

Protein sequence

>MsG0280008112.01.T01

MKNFILTSKGFNCTCCRWVDEVIPDVPWVINQEFIDKHKIDYVAHDALPYADTSGAGKDVYEFVKAIGKFKETKRTEGISTSDIIMRIIKDYNQYVMRNLDRGYSRKELGVSYVKEKRLRMNMGLKKLQERVKKQQETVGKKIGTVRRIAGMNRTEWVENADRLVAGFLEMFEEGCHKMGTAIRDRIQEQLKAQQLKSLLYDEWDDDVDDEFYEDESVEYYSD*