AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029235.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029235.01.T01 MTR_5g083150 84.692 601 32 4 43 584 3 602 0.0 994
MsG0580029235.01.T01 MTR_3g071530 59.907 646 147 13 46 583 8 649 0.0 708
MsG0580029235.01.T01 MTR_3g088790 49.105 503 189 6 129 565 222 723 1.23e-171 506
MsG0580029235.01.T01 MTR_3g096480 43.920 551 239 6 81 567 215 759 1.53e-167 496
MsG0580029235.01.T01 MTR_8g093880 44.203 552 238 6 81 567 243 789 7.42e-166 493
MsG0580029235.01.T01 MTR_5g021100 43.088 557 250 6 92 584 284 837 7.80e-162 483
MsG0580029235.01.T01 MTR_8g076650 45.545 505 212 7 123 566 370 872 1.82e-152 461
MsG0580029235.01.T01 MTR_5g080720 34.776 624 293 15 53 571 9 623 1.86e-124 380
MsG0580029235.01.T01 MTR_1g022255 39.057 530 248 10 98 567 168 682 1.47e-122 377
MsG0580029235.01.T01 MTR_1g029730 38.627 510 237 9 130 571 141 642 1.69e-119 368
MsG0580029235.01.T01 MTR_1g442840 39.634 492 224 10 140 563 101 587 1.29e-117 362
MsG0580029235.01.T01 MTR_1g442840 39.703 471 213 8 160 564 10 475 2.08e-117 358
MsG0580029235.01.T01 MTR_3g068990 36.709 553 259 13 100 571 109 651 2.38e-117 363
MsG0580029235.01.T01 MTR_1g069785 39.757 493 222 9 140 563 71 557 4.86e-117 360
MsG0580029235.01.T01 MTR_1g075900 38.431 497 229 9 140 566 100 589 1.22e-114 355
MsG0580029235.01.T01 MTR_5g080720 34.775 578 263 15 53 525 9 577 3.00e-109 339
MsG0580029235.01.T01 MTR_8g432620 35.771 506 248 10 138 577 95 589 3.01e-103 324
MsG0580029235.01.T01 MTR_7g076150 36.040 505 246 10 139 577 83 576 1.04e-102 323
MsG0580029235.01.T01 MTR_0019s0120 36.634 505 230 14 136 563 110 601 2.35e-101 320
MsG0580029235.01.T01 MTR_8g432680 32.085 614 312 15 45 567 10 609 1.20e-100 318
MsG0580029235.01.T01 MTR_7g076170 32.338 603 300 18 54 567 21 604 1.07e-98 313
MsG0580029235.01.T01 MTR_1g101370 33.109 595 294 17 56 567 23 596 1.72e-98 313
MsG0580029235.01.T01 MTR_7g006060 36.024 508 227 16 139 563 51 543 9.42e-97 306
MsG0580029235.01.T01 MTR_8g100075 34.661 502 245 15 140 567 107 599 1.28e-95 305
MsG0580029235.01.T01 MTR_8g055840 34.118 510 250 13 130 567 84 579 1.32e-95 305
MsG0580029235.01.T01 MTR_8g071280 34.879 496 241 10 140 563 79 564 1.08e-94 302
MsG0580029235.01.T01 MTR_5g040360 34.064 502 243 13 139 567 92 578 1.49e-94 302
MsG0580029235.01.T01 MTR_5g026930 36.128 501 228 13 140 563 81 566 5.08e-94 300
MsG0580029235.01.T01 MTR_3g040370 33.333 501 245 13 139 567 93 576 4.54e-90 290
MsG0580029235.01.T01 MTR_1g051055 34.269 499 248 11 140 568 95 583 1.18e-87 284
MsG0580029235.01.T01 MTR_4g098890 33.400 497 247 13 139 563 94 578 1.51e-87 297
MsG0580029235.01.T01 MTR_7g076150 34.873 433 209 8 200 568 1 424 1.55e-83 268
MsG0580029235.01.T01 MTR_0019s0120 34.932 438 195 14 136 496 110 534 3.99e-74 246
MsG0580029235.01.T01 MTR_1g022255 34.988 403 198 8 98 451 168 555 8.95e-74 246
MsG0580029235.01.T01 MTR_5g026930 35.023 434 190 13 140 496 81 499 2.71e-69 232
MsG0580029235.01.T01 MTR_5g064080 28.740 508 257 13 164 579 169 663 6.80e-67 230
MsG0580029235.01.T01 MTR_3g074780 26.557 610 320 17 55 570 97 672 3.73e-62 218
MsG0580029235.01.T01 MTR_4g083030 31.161 353 194 11 244 567 253 585 1.07e-51 187
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029235.01.T01 AT2G40280 56.089 583 176 10 63 582 18 583 0.0 629
MsG0580029235.01.T01 AT3G56080 52.053 609 209 8 45 577 4 605 0.0 603
MsG0580029235.01.T01 AT3G56080 51.083 554 188 8 45 522 4 550 0.0 534
MsG0580029235.01.T01 AT2G34300 47.206 519 211 4 114 569 224 742 3.39e-171 505
MsG0580029235.01.T01 AT2G34300 47.206 519 211 4 114 569 224 742 3.39e-171 505
MsG0580029235.01.T01 AT2G34300 47.206 519 211 4 114 569 224 742 3.39e-171 505
MsG0580029235.01.T01 AT1G29470 46.214 515 214 4 116 567 226 740 3.07e-170 503
MsG0580029235.01.T01 AT1G29470 46.214 515 214 4 116 567 226 740 3.07e-170 503
MsG0580029235.01.T01 AT5G64030 46.154 520 215 5 113 567 280 799 1.26e-166 495
MsG0580029235.01.T01 AT3G51070 47.036 523 207 6 130 583 371 892 2.01e-165 494
MsG0580029235.01.T01 AT3G51070 47.598 458 174 5 130 522 371 827 5.42e-145 439
MsG0580029235.01.T01 AT1G19430 39.189 518 242 8 110 567 201 705 1.40e-124 384
MsG0580029235.01.T01 AT1G19430 39.189 518 242 8 110 567 201 705 1.40e-124 384
MsG0580029235.01.T01 AT1G77260 38.697 522 242 12 113 568 127 636 7.19e-123 377
MsG0580029235.01.T01 AT5G06050 36.147 545 267 14 97 571 114 647 4.22e-119 368
MsG0580029235.01.T01 AT1G04430 39.279 499 228 9 140 569 93 585 1.57e-116 359
MsG0580029235.01.T01 AT1G04430 39.279 499 228 9 140 569 93 585 1.57e-116 359
MsG0580029235.01.T01 AT1G04430 39.279 499 228 9 140 569 93 585 1.57e-116 359
MsG0580029235.01.T01 AT2G39750 38.878 499 229 11 140 571 186 675 1.62e-116 362
MsG0580029235.01.T01 AT4G14360 39.757 493 222 9 140 563 85 571 6.25e-116 357
MsG0580029235.01.T01 AT4G14360 39.757 493 222 9 140 563 85 571 6.25e-116 357
MsG0580029235.01.T01 AT3G23300 39.516 496 225 9 140 566 88 577 5.31e-114 352
MsG0580029235.01.T01 AT3G23300 39.516 496 225 9 140 566 88 577 5.31e-114 352
MsG0580029235.01.T01 AT5G14430 38.353 498 222 9 140 563 89 575 7.03e-105 329
MsG0580029235.01.T01 AT5G14430 37.751 498 225 9 140 563 89 575 1.91e-102 323
MsG0580029235.01.T01 AT4G00740 36.166 506 246 10 138 577 88 582 9.85e-102 320
MsG0580029235.01.T01 AT4G00740 36.166 506 246 10 138 577 88 582 9.85e-102 320
MsG0580029235.01.T01 AT4G10440 32.998 597 307 16 45 563 10 591 1.36e-101 321
MsG0580029235.01.T01 AT5G04060 36.600 500 236 10 140 570 92 579 9.31e-101 318
MsG0580029235.01.T01 AT1G33170 35.872 499 237 13 140 563 119 609 1.67e-99 316
MsG0580029235.01.T01 AT4G19120 35.317 521 247 13 140 583 79 586 8.04e-99 313
MsG0580029235.01.T01 AT4G19120 35.317 521 247 13 140 583 79 586 8.04e-99 313
MsG0580029235.01.T01 AT1G31850 35.294 510 240 13 140 572 85 581 9.22e-98 310
MsG0580029235.01.T01 AT1G31850 35.294 510 240 13 140 572 85 581 9.22e-98 310
MsG0580029235.01.T01 AT1G31850 35.294 510 240 13 140 572 85 581 9.22e-98 310
MsG0580029235.01.T01 AT1G31850 35.294 510 240 13 140 572 85 581 9.22e-98 310
MsG0580029235.01.T01 AT2G43200 35.490 510 245 14 132 568 93 591 1.39e-97 310
MsG0580029235.01.T01 AT2G43200 35.490 510 245 14 132 568 93 591 1.39e-97 310
MsG0580029235.01.T01 AT4G00750 34.722 504 238 15 140 563 105 597 1.68e-96 308
MsG0580029235.01.T01 AT2G45750 31.561 602 294 17 54 564 17 591 1.70e-96 308
MsG0580029235.01.T01 AT3G10200 34.263 502 246 10 140 570 81 569 3.16e-95 303
MsG0580029235.01.T01 AT1G26850 33.531 507 246 13 139 567 94 587 1.16e-90 292
MsG0580029235.01.T01 AT1G26850 33.531 507 246 13 139 567 94 587 1.16e-90 292
MsG0580029235.01.T01 AT3G10200 35.244 471 221 10 140 539 81 538 9.63e-89 286
MsG0580029235.01.T01 AT4G18030 32.576 528 256 15 120 567 75 582 5.50e-86 280
MsG0580029235.01.T01 AT1G19430 35.806 391 189 6 110 451 201 578 2.83e-76 254
MsG0580029235.01.T01 AT4G19120 33.641 434 198 13 140 496 79 499 1.43e-69 233
MsG0580029235.01.T01 AT1G13860 26.642 533 273 16 129 570 80 585 1.98e-56 200
MsG0580029235.01.T01 AT1G13860 26.642 533 273 16 129 570 80 585 1.98e-56 200
MsG0580029235.01.T01 AT1G13860 26.642 533 273 16 129 570 80 585 1.98e-56 200
MsG0580029235.01.T01 AT1G13860 26.642 533 273 16 129 570 80 585 1.98e-56 200
MsG0580029235.01.T01 AT2G03480 28.627 510 253 17 141 563 96 581 1.54e-55 198
MsG0580029235.01.T01 AT2G03480 28.916 498 256 16 141 563 96 570 1.98e-55 197
MsG0580029235.01.T01 AT1G26850 30.751 413 196 12 139 474 94 493 5.77e-55 194
MsG0580029235.01.T01 AT1G78240 29.091 385 220 9 235 579 301 672 8.28e-54 194
MsG0580029235.01.T01 AT1G78240 29.091 385 220 9 235 579 301 672 8.28e-54 194
MsG0580029235.01.T01 AT1G13860 30.220 364 202 10 244 570 81 429 6.35e-53 187
MsG0580029235.01.T01 AT2G03480 23.962 313 165 10 141 391 96 397 8.53e-18 86.7

Find 153 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCGCAACTCTTTCGGTTAT+TGG 0.084761 5:+94146777 MsG0580029235.01.T01:CDS
CAAAATCATTAGCAAAATTT+TGG 0.124492 5:+94148951 MsG0580029235.01.T01:three_prime_UTR
CTGGAACTGCCATACTATTT+TGG 0.192840 5:-94145482 None:intergenic
AGATACCCTTTCTATTATAT+TGG 0.227001 5:+94148045 MsG0580029235.01.T01:CDS
GCTGACGGTCTTTCGATAAA+TGG 0.255080 5:+94147764 MsG0580029235.01.T01:CDS
AGGGAGTGTTTATAGTAATA+AGG 0.282095 5:-94145435 None:intergenic
CTTACCCCTCTTCCGGTTGA+TGG 0.286092 5:+94147599 MsG0580029235.01.T01:CDS
AATATAATAGAAAGGGTATC+TGG 0.291523 5:-94148043 None:intergenic
AGAATCTGAATCTAAGTCTA+AGG 0.302051 5:-94145667 None:intergenic
TTCTTGTACTCAACTAGCTT+TGG 0.306670 5:-94146344 None:intergenic
AGAACTAAAGCTTCCTTCTA+AGG 0.308728 5:+94145704 MsG0580029235.01.T01:CDS
CTCTCATTGATCGACCAGTC+TGG 0.320215 5:+94147993 MsG0580029235.01.T01:CDS
GATTCTTCTTCTTCCTTAGA+AGG 0.321880 5:-94145717 None:intergenic
ATATTGGACCGAGGATTAAT+AGG 0.327041 5:+94148061 MsG0580029235.01.T01:CDS
AGGAATTCCCGCAACTCTTT+CGG 0.327677 5:+94146770 MsG0580029235.01.T01:CDS
GGAATATTAAGTTATTTGAT+AGG 0.331295 5:+94148985 MsG0580029235.01.T01:three_prime_UTR
ATGATCGAGATCAGAAAGTT+TGG 0.353242 5:+94147042 MsG0580029235.01.T01:CDS
AAGAAGCTCTTAATATTGAT+TGG 0.354124 5:+94145751 MsG0580029235.01.T01:CDS
GGTTGATTATATACCATGTT+TGG 0.354193 5:+94145797 MsG0580029235.01.T01:CDS
AGGGTTGAAGGTGGTGGTGG+TGG 0.361328 5:-94145598 None:intergenic
CGTGCGCGGATAGGTATTAA+AGG 0.362105 5:-94148107 None:intergenic
CCCTCTTCCGGTTGATGGTA+AGG 0.362587 5:+94147604 MsG0580029235.01.T01:CDS
GGTGAATATCTCATATTTCC+AGG 0.365276 5:+94146392 MsG0580029235.01.T01:CDS
GGTATAAAGTTCCAGTTCAT+TGG 0.367859 5:+94145925 MsG0580029235.01.T01:CDS
GCCGACGATTCATCTGGAAT+TGG 0.371699 5:+94147327 MsG0580029235.01.T01:CDS
AATAAGACATGATGTTATAA+TGG 0.376397 5:-94145406 None:intergenic
TAGTTGCCTTACCCCTCTTC+CGG 0.379464 5:+94147592 MsG0580029235.01.T01:CDS
ATAGAGAGAGTTAGAATGAA+TGG 0.379473 5:-94145540 None:intergenic
ACTGGAACTTTATACCCTTT+AGG 0.382038 5:-94145918 None:intergenic
CGCAGAGCTGGCCCATGCCT+TGG 0.386623 5:+94147633 MsG0580029235.01.T01:CDS
AGCCCAGATACAGTTTGCTT+TGG 0.389397 5:+94146743 MsG0580029235.01.T01:intron
TATATATATATTTAACCAAC+AGG 0.390875 5:-94149029 None:intergenic
TCTCTCTCTCCAAAATAGTA+TGG 0.391904 5:+94145473 MsG0580029235.01.T01:CDS
TTGGCCTAAGAGCAGGGATA+TGG 0.398102 5:+94145944 MsG0580029235.01.T01:CDS
AAACATTTCAAGCTAGTATC+AGG 0.398459 5:-94145885 None:intergenic
CTATTCAAGCTTTGAAATCA+AGG 0.401665 5:+94145832 MsG0580029235.01.T01:CDS
CGATCATCATCACGATAAAC+TGG 0.402647 5:-94147026 None:intergenic
CCAATAACCGAAAGAGTTGC+GGG 0.405856 5:-94146777 None:intergenic
GTTTGTTGCCTCTTCCTAAA+GGG 0.406726 5:+94145904 MsG0580029235.01.T01:CDS
GACCTGGCGGTTACTTTGCA+TGG 0.407425 5:+94146994 MsG0580029235.01.T01:CDS
ATAGAAAAGAAGAGGGTTGA+AGG 0.414609 5:-94145610 None:intergenic
CTCACCATATCCCTGCTCTT+AGG 0.416903 5:-94145948 None:intergenic
CCGACGATTCATCTGGAATT+GGG 0.423888 5:+94147328 MsG0580029235.01.T01:CDS
CAACACTGGGTTGTGAAATC+TGG 0.430518 5:+94146371 MsG0580029235.01.T01:CDS
CAGTTCATTGGCCTAAGAGC+AGG 0.437413 5:+94145937 MsG0580029235.01.T01:CDS
GCTAAGGCCGACGATTCATC+TGG 0.443831 5:+94147321 MsG0580029235.01.T01:CDS
AGAGAGAGTGAGAGAGAGAG+AGG 0.445811 5:-94145455 None:intergenic
CTCGGTCCAATATAATAGAA+AGG 0.453764 5:-94148051 None:intergenic
AACCGTTATACGAACTCAAT+AGG 0.456654 5:+94146964 MsG0580029235.01.T01:CDS
ATCAAATCAAAACCATTGTC+AGG 0.460715 5:-94146819 None:intergenic
CTGCTCTTAGGCCAATGAAC+TGG 0.464576 5:-94145936 None:intergenic
CAAATCAGTTTCTTGTCGGC+AGG 0.466183 5:+94148825 MsG0580029235.01.T01:CDS
TGTTTGTTGCCTCTTCCTAA+AGG 0.468159 5:+94145903 MsG0580029235.01.T01:CDS
AAGAGGGTTGAAGGTGGTGG+TGG 0.468172 5:-94145601 None:intergenic
CCCTTACCATCAACCGGAAG+AGG 0.468916 5:-94147605 None:intergenic
GGCCCATGCCTTGGCCTCAG+AGG 0.471979 5:+94147642 MsG0580029235.01.T01:CDS
CAGTGTAGTGAACGCAAGAT+TGG 0.472081 5:-94148786 None:intergenic
AAGAAGATGAAGTAGGCTTC+TGG 0.472632 5:-94147362 None:intergenic
GCATCAAATCAGTTTCTTGT+CGG 0.478034 5:+94148821 MsG0580029235.01.T01:CDS
GTGCACGATGCAGAGTTCAC+TGG 0.478786 5:+94146847 MsG0580029235.01.T01:CDS
TAATAGGAATGTATCATGAT+TGG 0.480615 5:+94148077 MsG0580029235.01.T01:CDS
GGTTTACCCTTACCATCAAC+CGG 0.484724 5:-94147611 None:intergenic
GTGCTGGAAGGTTGTGGCTA+AGG 0.485213 5:+94147305 MsG0580029235.01.T01:CDS
ATTCAGCTTCCTAAGCTTGT+GGG 0.489420 5:-94148863 None:intergenic
TTGAATTGAGTACCACCTCC+TGG 0.491007 5:-94146410 None:intergenic
AGGGTATCTGGGACATCAAT+GGG 0.492182 5:-94148031 None:intergenic
TCAGTGGCATCTGAATCATT+AGG 0.495986 5:-94147689 None:intergenic
AAGGGTATCTGGGACATCAA+TGG 0.496337 5:-94148032 None:intergenic
ACTTTATACCCTTTAGGAAG+AGG 0.498635 5:-94145912 None:intergenic
TTATATTGAGTTCATAGAAA+AGG 0.499862 5:+94146448 MsG0580029235.01.T01:CDS
CATTCAGCTTCCTAAGCTTG+TGG 0.500081 5:-94148864 None:intergenic
AGAAGAAGAATCTCCACAAA+AGG 0.501860 5:+94145728 MsG0580029235.01.T01:CDS
TTTGAAATCAAGGAGGCATA+TGG 0.502850 5:+94145842 MsG0580029235.01.T01:CDS
CTATAACAAAAGCTATGTGC+TGG 0.503676 5:+94147289 MsG0580029235.01.T01:CDS
AAGAAGAGGGTTGAAGGTGG+TGG 0.505997 5:-94145604 None:intergenic
ATCCTATTGAGTTCGTATAA+CGG 0.506639 5:-94146966 None:intergenic
AGCCTCTGAGGCCAAGGCAT+GGG 0.508820 5:-94147644 None:intergenic
AAGAAGTGATCATCTTCAGC+TGG 0.510098 5:-94145501 None:intergenic
GAGTTTGTTAAGCATTTCCA+TGG 0.510598 5:-94148760 None:intergenic
AAGATCATACGTGCGCGGAT+AGG 0.516138 5:-94148116 None:intergenic
TCGTAACAAGAAGATGAAGT+AGG 0.519163 5:-94147369 None:intergenic
TCCAATAACCGAAAGAGTTG+CGG 0.522216 5:-94146778 None:intergenic
TCTGAATCATTAGGTAAGCT+AGG 0.522277 5:-94147680 None:intergenic
GGTAAGGCAACTATTGAGTC+GGG 0.523465 5:-94147582 None:intergenic
CTAGTGAGCCTCTGAGGCCA+AGG 0.523987 5:-94147650 None:intergenic
CATCAACCGGAAGAGGGGTA+AGG 0.528559 5:-94147598 None:intergenic
TCTTGTGATTCATGATTCCA+TGG 0.531025 5:+94148743 MsG0580029235.01.T01:CDS
TCGGTCCAATATAATAGAAA+GGG 0.532190 5:-94148050 None:intergenic
TCTCATTGATCGACCAGTCT+GGG 0.534087 5:+94147994 MsG0580029235.01.T01:CDS
CGAGATCAGAAAGTTTGGAA+AGG 0.534744 5:+94147047 MsG0580029235.01.T01:CDS
GACCATGCAAAGTAACCGCC+AGG 0.535797 5:-94146996 None:intergenic
CATTAGAATAGAAAAGAAGA+GGG 0.539125 5:-94145617 None:intergenic
ACTACATTCATCACCCAGAC+TGG 0.544990 5:-94148007 None:intergenic
GTAAGGGTAAACCGCAGAGC+TGG 0.545086 5:+94147621 MsG0580029235.01.T01:CDS
CAAGGCATGGGCCAGCTCTG+CGG 0.545110 5:-94147632 None:intergenic
TGAATCACAAGATATCCATC+TGG 0.545198 5:-94148732 None:intergenic
CCTCTTCCGGTTGATGGTAA+GGG 0.547295 5:+94147605 MsG0580029235.01.T01:CDS
GGTATATAATCAACCGTCAC+AGG 0.551393 5:-94145789 None:intergenic
ATTTATAATACACTGAAACA+TGG 0.552992 5:-94148928 None:intergenic
TATCTCATATTTCCAGGAGG+TGG 0.558976 5:+94146398 MsG0580029235.01.T01:CDS
AGTACAAGAAAGACCAACAC+TGG 0.559268 5:+94146357 MsG0580029235.01.T01:CDS
AGCTATGTGCTGGAAGGTTG+TGG 0.559989 5:+94147299 MsG0580029235.01.T01:CDS
CGACCTTGTAGATGTGGTTG+TGG 0.560004 5:+94148689 MsG0580029235.01.T01:CDS
TGGTGGTGGTGGTTGTGAGG+AGG 0.561968 5:-94145587 None:intergenic
ATATAATAGAAAGGGTATCT+GGG 0.563948 5:-94148042 None:intergenic
GAGCCTCTGAGGCCAAGGCA+TGG 0.564443 5:-94147645 None:intergenic
GGGTAAGGCAACTATTGAGT+CGG 0.565389 5:-94147583 None:intergenic
CCTTTATGTGAAAATGCGGA+TGG 0.565628 5:+94147414 MsG0580029235.01.T01:CDS
ACATTAGAATAGAAAAGAAG+AGG 0.566630 5:-94145618 None:intergenic
ATGATCACTTCTTCAAGCAA+AGG 0.567427 5:+94145511 MsG0580029235.01.T01:CDS
CTCAATAGGATTCTTAGACC+TGG 0.572500 5:+94146978 MsG0580029235.01.T01:CDS
TACTCAACTAGCTTTGGATG+AGG 0.572597 5:-94146338 None:intergenic
AGTTCATTGGCCTAAGAGCA+GGG 0.579581 5:+94145938 MsG0580029235.01.T01:CDS
GTGTCAAATGTTTATGCTGA+CGG 0.581098 5:+94147749 MsG0580029235.01.T01:CDS
ATACAGTTTGCTTTGGAGCG+AGG 0.581212 5:+94146750 MsG0580029235.01.T01:CDS
ACTCAACTAGCTTTGGATGA+GGG 0.582082 5:-94146337 None:intergenic
TTGACACTAGTTGAGACCAC+TGG 0.583667 5:-94147733 None:intergenic
TCTCCACAACCACATCTACA+AGG 0.584784 5:-94148692 None:intergenic
GATACATTCCTATTAATCCT+CGG 0.585004 5:-94148069 None:intergenic
TGCACGATGCAGAGTTCACT+GGG 0.585138 5:+94146848 MsG0580029235.01.T01:CDS
GATCGCATATTGAGACCAGA+TGG 0.586113 5:+94148717 MsG0580029235.01.T01:CDS
GAATCTGAATCTAAGTCTAA+GGG 0.589684 5:-94145666 None:intergenic
CCTTACCATCAACCGGAAGA+GGG 0.590903 5:-94147604 None:intergenic
AACAAAAGCTATGTGCTGGA+AGG 0.592997 5:+94147293 MsG0580029235.01.T01:CDS
CCCAATTCCAGATGAATCGT+CGG 0.595970 5:-94147328 None:intergenic
GTCCTTGTTGAACTCATCAG+TGG 0.597006 5:-94147705 None:intergenic
GCTTTATAATTATCCAAACA+TGG 0.604113 5:-94145810 None:intergenic
CAATCTTGCGTTCACTACAC+TGG 0.607724 5:+94148787 MsG0580029235.01.T01:CDS
TGTATGAGTGTGAAACCTGT+TGG 0.608999 5:+94149014 MsG0580029235.01.T01:three_prime_UTR
CAGATTTCACAACCCAGTGT+TGG 0.613998 5:-94146370 None:intergenic
CTTTCTATTATATTGGACCG+AGG 0.614831 5:+94148052 MsG0580029235.01.T01:CDS
TCCACCTTTATGTGAAAATG+CGG 0.621623 5:+94147410 MsG0580029235.01.T01:CDS
GAAAAGAAGAGGGTTGAAGG+TGG 0.623402 5:-94145607 None:intergenic
GGCTTACTAGTGAGCCTCTG+AGG 0.624357 5:-94147656 None:intergenic
AGAGTTCACTGGGATGCAGA+TGG 0.630127 5:+94146858 MsG0580029235.01.T01:CDS
TTAGGAAGCTGAATGCACTC+AGG 0.632043 5:+94148872 MsG0580029235.01.T01:exon
CTTTATGTGAAAATGCGGAT+GGG 0.632674 5:+94147415 MsG0580029235.01.T01:CDS
CAGATGCGACCTTGTAGATG+TGG 0.640987 5:+94148683 MsG0580029235.01.T01:intron
ATGGAAATGCTTAACAAACT+CGG 0.646939 5:+94148762 MsG0580029235.01.T01:CDS
GGTGGTACTCAATTCAAAGA+CGG 0.662408 5:+94146416 MsG0580029235.01.T01:CDS
TGGTCGATCAATGAGAGATG+CGG 0.663022 5:-94147987 None:intergenic
GCTTTGTAAGAAACCTGTGA+CGG 0.677888 5:+94145776 MsG0580029235.01.T01:CDS
CTTACCATCAACCGGAAGAG+GGG 0.679492 5:-94147603 None:intergenic
AATAGGATTCTTAGACCTGG+CGG 0.687488 5:+94146981 MsG0580029235.01.T01:CDS
TCTGAATCTAAGTCTAAGGG+TGG 0.687503 5:-94145663 None:intergenic
TCAACAAGGACAGCAGCCAG+TGG 0.691328 5:+94147717 MsG0580029235.01.T01:CDS
TTCAAGCTTTGAAATCAAGG+AGG 0.703688 5:+94145835 MsG0580029235.01.T01:CDS
TGAAGAAGATCATACGTGCG+CGG 0.704664 5:-94148121 None:intergenic
ACTCAGGTCAATGAACATGA+TGG 0.710004 5:+94148888 MsG0580029235.01.T01:three_prime_UTR
GAATCATTAGGTAAGCTAGG+AGG 0.714467 5:-94147677 None:intergenic
GTACAAGAAAGACCAACACT+GGG 0.719018 5:+94146358 MsG0580029235.01.T01:CDS
TGCCACTGATGAGTTCAACA+AGG 0.723232 5:+94147703 MsG0580029235.01.T01:CDS
GAATATCTCATATTTCCAGG+AGG 0.746325 5:+94146395 MsG0580029235.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATATCAATATCTGAT+AGG + Chr5:94146901-94146920 MsG0580029235.01.T01:intron 15.0%
!! CATACAAATTATTATAACTT+AGG + Chr5:94147175-94147194 MsG0580029235.01.T01:intron 15.0%
!! GATTAAAATATAAATGTCAT+AGG - Chr5:94147487-94147506 None:intergenic 15.0%
!! TATATATATATTTAACCAAC+AGG - Chr5:94149032-94149051 None:intergenic 15.0%
!!! AAAATTTTGGATTATAAGAA+AGG + Chr5:94148964-94148983 MsG0580029235.01.T01:three_prime_UTR 15.0%
!!! CTTATAGTTATTAGTTTTTA+CGG - Chr5:94148547-94148566 None:intergenic 15.0%
!!! TTATAGTTATTAGTTTTTAC+GGG - Chr5:94148546-94148565 None:intergenic 15.0%
!! AATAAGACATGATGTTATAA+TGG - Chr5:94145409-94145428 None:intergenic 20.0%
!! AGTACTTCTAATTTAATACA+TGG + Chr5:94147115-94147134 MsG0580029235.01.T01:intron 20.0%
!! ATTTATAATACACTGAAACA+TGG - Chr5:94148931-94148950 None:intergenic 20.0%
!! GGAATATTAAGTTATTTGAT+AGG + Chr5:94148985-94149004 MsG0580029235.01.T01:three_prime_UTR 20.0%
!! GTATATACTTTGTAAAAGAT+TGG + Chr5:94147836-94147855 MsG0580029235.01.T01:intron 20.0%
!! TTATATTGAGTTCATAGAAA+AGG + Chr5:94146448-94146467 MsG0580029235.01.T01:CDS 20.0%
!!! CAAAATCATTAGCAAAATTT+TGG + Chr5:94148951-94148970 MsG0580029235.01.T01:three_prime_UTR 20.0%
!!! TATTTCTGTTTAAACAGATT+TGG + Chr5:94146303-94146322 MsG0580029235.01.T01:intron 20.0%
! AAGAAGCTCTTAATATTGAT+TGG + Chr5:94145751-94145770 MsG0580029235.01.T01:CDS 25.0%
! ACAAGTGTTATAGATAAGAT+TGG - Chr5:94147895-94147914 None:intergenic 25.0%
! ACATTAGAATAGAAAAGAAG+AGG - Chr5:94145621-94145640 None:intergenic 25.0%
! AGATACCCTTTCTATTATAT+TGG + Chr5:94148045-94148064 MsG0580029235.01.T01:CDS 25.0%
! ATGCTTATTTAAAAACGTAG+AGG + Chr5:94148179-94148198 MsG0580029235.01.T01:intron 25.0%
! ATTATAACTTAGGAGATCAA+TGG + Chr5:94147185-94147204 MsG0580029235.01.T01:intron 25.0%
! CATTAGAATAGAAAAGAAGA+GGG - Chr5:94145620-94145639 None:intergenic 25.0%
! GCTTTATAATTATCCAAACA+TGG - Chr5:94145813-94145832 None:intergenic 25.0%
! GGTATGTTTATTCACAAATT+TGG + Chr5:94146922-94146941 MsG0580029235.01.T01:intron 25.0%
! GTATCAATTTGAATGAAGTT+TGG - Chr5:94147943-94147962 None:intergenic 25.0%
! TAATAGGAATGTATCATGAT+TGG + Chr5:94148077-94148096 MsG0580029235.01.T01:CDS 25.0%
! TGTCAGTTTAAAGAAAATAG+TGG + Chr5:94146211-94146230 MsG0580029235.01.T01:intron 25.0%
!! ACAATATGAGTTAAGTTTTG+AGG + Chr5:94148359-94148378 MsG0580029235.01.T01:intron 25.0%
!!! AATATAATAGAAAGGGTATC+TGG - Chr5:94148046-94148065 None:intergenic 25.0%
!!! ATATAATAGAAAGGGTATCT+GGG - Chr5:94148045-94148064 None:intergenic 25.0%
!!! TGTTTGTTGTGTTTTTGTTT+TGG + Chr5:94145998-94146017 MsG0580029235.01.T01:intron 25.0%
!!! TTTATTTTTCTCAAGCACAA+GGG - Chr5:94147225-94147244 None:intergenic 25.0%
!!! TTTTATTTTTCTCAAGCACA+AGG - Chr5:94147226-94147245 None:intergenic 25.0%
AAACATTTCAAGCTAGTATC+AGG - Chr5:94145888-94145907 None:intergenic 30.0%
ACATTAGCGAAAATTCAATG+GGG + Chr5:94146610-94146629 MsG0580029235.01.T01:intron 30.0%
AGAATCTGAATCTAAGTCTA+AGG - Chr5:94145670-94145689 None:intergenic 30.0%
AGACATTAGCGAAAATTCAA+TGG + Chr5:94146608-94146627 MsG0580029235.01.T01:intron 30.0%
ATAGAGAGAGTTAGAATGAA+TGG - Chr5:94145543-94145562 None:intergenic 30.0%
ATCAAATCAAAACCATTGTC+AGG - Chr5:94146822-94146841 None:intergenic 30.0%
ATCCTATTGAGTTCGTATAA+CGG - Chr5:94146969-94146988 None:intergenic 30.0%
ATGGAAATGCTTAACAAACT+CGG + Chr5:94148762-94148781 MsG0580029235.01.T01:CDS 30.0%
GAAAACTTCAAGTATAGAGA+AGG - Chr5:94147082-94147101 None:intergenic 30.0%
GAATCTGAATCTAAGTCTAA+GGG - Chr5:94145669-94145688 None:intergenic 30.0%
GACATTAGCGAAAATTCAAT+GGG + Chr5:94146609-94146628 MsG0580029235.01.T01:intron 30.0%
GATACATTCCTATTAATCCT+CGG - Chr5:94148072-94148091 None:intergenic 30.0%
GGTTGATTATATACCATGTT+TGG + Chr5:94145797-94145816 MsG0580029235.01.T01:CDS 30.0%
TCAATTTGAATGAAGTTTGG+TGG - Chr5:94147940-94147959 None:intergenic 30.0%
TCGGTCCAATATAATAGAAA+GGG - Chr5:94148053-94148072 None:intergenic 30.0%
TGAAAAAATTACTTGATCCG+TGG - Chr5:94148421-94148440 None:intergenic 30.0%
! ATATGGTGAGATTGATTCTT+TGG + Chr5:94145961-94145980 MsG0580029235.01.T01:intron 30.0%
! ATTGAATTTTCGCTAATGTC+TGG - Chr5:94146609-94146628 None:intergenic 30.0%
! TTTTCAAACATCTTGAGCAA+AGG + Chr5:94148155-94148174 MsG0580029235.01.T01:CDS 30.0%
!! AGGGAGTGTTTATAGTAATA+AGG - Chr5:94145438-94145457 None:intergenic 30.0%
!! CATATTGTTTTTCCATGTTC+AGG - Chr5:94148347-94148366 None:intergenic 30.0%
!! CATGAAATGCTACTTTGTTT+AGG + Chr5:94146110-94146129 MsG0580029235.01.T01:intron 30.0%
!! CTATTCAAGCTTTGAAATCA+AGG + Chr5:94145832-94145851 MsG0580029235.01.T01:CDS 30.0%
!!! AAGTAATTTTTTCAGCTGTG+AGG + Chr5:94148427-94148446 MsG0580029235.01.T01:intron 30.0%
!!! TAGTTATTAGTTTTTACGGG+TGG - Chr5:94148543-94148562 None:intergenic 30.0%
AACCGTTATACGAACTCAAT+AGG + Chr5:94146964-94146983 MsG0580029235.01.T01:CDS 35.0%
ACTGGAACTTTATACCCTTT+AGG - Chr5:94145921-94145940 None:intergenic 35.0%
AGAACTAAAGCTTCCTTCTA+AGG + Chr5:94145704-94145723 MsG0580029235.01.T01:CDS 35.0%
AGAAGAAGAATCTCCACAAA+AGG + Chr5:94145728-94145747 MsG0580029235.01.T01:CDS 35.0%
ATAGAAAAGAAGAGGGTTGA+AGG - Chr5:94145613-94145632 None:intergenic 35.0%
ATATTGGACCGAGGATTAAT+AGG + Chr5:94148061-94148080 MsG0580029235.01.T01:CDS 35.0%
ATGATCACTTCTTCAAGCAA+AGG + Chr5:94145511-94145530 MsG0580029235.01.T01:CDS 35.0%
ATGATCGAGATCAGAAAGTT+TGG + Chr5:94147042-94147061 MsG0580029235.01.T01:CDS 35.0%
ATGTCATAGGAAACAAGACA+TGG - Chr5:94147474-94147493 None:intergenic 35.0%
CTATAACAAAAGCTATGTGC+TGG + Chr5:94147289-94147308 MsG0580029235.01.T01:CDS 35.0%
CTCGGTCCAATATAATAGAA+AGG - Chr5:94148054-94148073 None:intergenic 35.0%
CTTTATGTGAAAATGCGGAT+GGG + Chr5:94147415-94147434 MsG0580029235.01.T01:CDS 35.0%
CTTTCTATTATATTGGACCG+AGG + Chr5:94148052-94148071 MsG0580029235.01.T01:CDS 35.0%
GAATATCTCATATTTCCAGG+AGG + Chr5:94146395-94146414 MsG0580029235.01.T01:CDS 35.0%
GATTCTTCTTCTTCCTTAGA+AGG - Chr5:94145720-94145739 None:intergenic 35.0%
GCATCAAATCAGTTTCTTGT+CGG + Chr5:94148821-94148840 MsG0580029235.01.T01:CDS 35.0%
GGTATAAAGTTCCAGTTCAT+TGG + Chr5:94145925-94145944 MsG0580029235.01.T01:CDS 35.0%
GGTGAATATCTCATATTTCC+AGG + Chr5:94146392-94146411 MsG0580029235.01.T01:CDS 35.0%
GTCAAGTGTTCGAAATGTAA+TGG + Chr5:94147786-94147805 MsG0580029235.01.T01:intron 35.0%
GTGTCAAATGTTTATGCTGA+CGG + Chr5:94147749-94147768 MsG0580029235.01.T01:CDS 35.0%
TCCACCTTTATGTGAAAATG+CGG + Chr5:94147410-94147429 MsG0580029235.01.T01:CDS 35.0%
TCGTAACAAGAAGATGAAGT+AGG - Chr5:94147372-94147391 None:intergenic 35.0%
TCTCTCTCTCCAAAATAGTA+TGG + Chr5:94145473-94145492 MsG0580029235.01.T01:CDS 35.0%
TCTGAATCATTAGGTAAGCT+AGG - Chr5:94147683-94147702 None:intergenic 35.0%
TCTTGTGATTCATGATTCCA+TGG + Chr5:94148743-94148762 MsG0580029235.01.T01:CDS 35.0%
TGAATCACAAGATATCCATC+TGG - Chr5:94148735-94148754 None:intergenic 35.0%
TTACTAGCTACTATGCTTTG+TGG + Chr5:94146559-94146578 MsG0580029235.01.T01:intron 35.0%
! ACTTTATACCCTTTAGGAAG+AGG - Chr5:94145915-94145934 None:intergenic 35.0%
! ATCAAATCGCTGTCTTTTGT+AGG + Chr5:94147555-94147574 MsG0580029235.01.T01:intron 35.0%
! CTTCTAGAAGTAGAAACTCA+CGG - Chr5:94148463-94148482 None:intergenic 35.0%
! TTAAGAGCTTCTTCCTTTTG+TGG - Chr5:94145744-94145763 None:intergenic 35.0%
! TTCTTGTACTCAACTAGCTT+TGG - Chr5:94146347-94146366 None:intergenic 35.0%
! TTTGAAATCAAGGAGGCATA+TGG + Chr5:94145842-94145861 MsG0580029235.01.T01:CDS 35.0%
!! AAGTTGACTTTTCCTGACAA+TGG + Chr5:94146807-94146826 MsG0580029235.01.T01:CDS 35.0%
!! AATGTAATGGACATGAATGC+TGG + Chr5:94147799-94147818 MsG0580029235.01.T01:intron 35.0%
!! ATTAGAAGTACTCTCGATAC+AGG - Chr5:94147107-94147126 None:intergenic 35.0%
!! GAGTTTGTTAAGCATTTCCA+TGG - Chr5:94148763-94148782 None:intergenic 35.0%
!! TTCAAGCTTTGAAATCAAGG+AGG + Chr5:94145835-94145854 MsG0580029235.01.T01:CDS 35.0%
AACAAAAGCTATGTGCTGGA+AGG + Chr5:94147293-94147312 MsG0580029235.01.T01:CDS 40.0%
AAGAAGATGAAGTAGGCTTC+TGG - Chr5:94147365-94147384 None:intergenic 40.0%
AAGAAGTGATCATCTTCAGC+TGG - Chr5:94145504-94145523 None:intergenic 40.0%
AATAGGATTCTTAGACCTGG+CGG + Chr5:94146981-94147000 MsG0580029235.01.T01:CDS 40.0%
AATTATGCGAACGCACACAA+TGG - Chr5:94146478-94146497 None:intergenic 40.0%
ACACTTGTGTCAACTGAAGT+TGG + Chr5:94147907-94147926 MsG0580029235.01.T01:intron 40.0%
ACTCAGGTCAATGAACATGA+TGG + Chr5:94148888-94148907 MsG0580029235.01.T01:three_prime_UTR 40.0%
AGTACAAGAAAGACCAACAC+TGG + Chr5:94146357-94146376 MsG0580029235.01.T01:CDS 40.0%
ATCACCGCCATGATCATAAT+GGG + Chr5:94148587-94148606 MsG0580029235.01.T01:intron 40.0%
ATTCAGCTTCCTAAGCTTGT+GGG - Chr5:94148866-94148885 None:intergenic 40.0%
CAAATTTGGTCCACATCTGT+AGG + Chr5:94146936-94146955 MsG0580029235.01.T01:intron 40.0%
CAAGAGTCCCATTATGATCA+TGG - Chr5:94148597-94148616 None:intergenic 40.0%
CATCTGTCAAAGATTACCGT+TGG - Chr5:94148669-94148688 None:intergenic 40.0%
CCTTTATGTGAAAATGCGGA+TGG + Chr5:94147414-94147433 MsG0580029235.01.T01:CDS 40.0%
CGAGATCAGAAAGTTTGGAA+AGG + Chr5:94147047-94147066 MsG0580029235.01.T01:CDS 40.0%
CGATCATCATCACGATAAAC+TGG - Chr5:94147029-94147048 None:intergenic 40.0%
CTCAATAGGATTCTTAGACC+TGG + Chr5:94146978-94146997 MsG0580029235.01.T01:CDS 40.0%
CTCCAAAGCAAACTGTATCT+GGG - Chr5:94146748-94146767 None:intergenic 40.0%
GAATCATTAGGTAAGCTAGG+AGG - Chr5:94147680-94147699 None:intergenic 40.0%
GAGGCAATTTCTACAGTAGA+CGG + Chr5:94148198-94148217 MsG0580029235.01.T01:intron 40.0%
GCTTTGTAAGAAACCTGTGA+CGG + Chr5:94145776-94145795 MsG0580029235.01.T01:CDS 40.0%
GGTATATAATCAACCGTCAC+AGG - Chr5:94145792-94145811 None:intergenic 40.0%
GGTGGTACTCAATTCAAAGA+CGG + Chr5:94146416-94146435 MsG0580029235.01.T01:CDS 40.0%
GTACAAGAAAGACCAACACT+GGG + Chr5:94146358-94146377 MsG0580029235.01.T01:CDS 40.0%
TATCTCATATTTCCAGGAGG+TGG + Chr5:94146398-94146417 MsG0580029235.01.T01:CDS 40.0%
TCAGTGGCATCTGAATCATT+AGG - Chr5:94147692-94147711 None:intergenic 40.0%
TCCAATAACCGAAAGAGTTG+CGG - Chr5:94146781-94146800 None:intergenic 40.0%
TCTGAATCTAAGTCTAAGGG+TGG - Chr5:94145666-94145685 None:intergenic 40.0%
TGAGACATGATTCTGACCAA+CGG + Chr5:94148650-94148669 MsG0580029235.01.T01:intron 40.0%
TGGCAGTTCGACAAAAACAA+GGG - Chr5:94148401-94148420 None:intergenic 40.0%
TGTATGAGTGTGAAACCTGT+TGG + Chr5:94149014-94149033 MsG0580029235.01.T01:three_prime_UTR 40.0%
! ACATGAATGCTGGTTATGCA+GGG + Chr5:94147809-94147828 MsG0580029235.01.T01:intron 40.0%
! ATCAGGGTTGTTCTAGATGT+TGG + Chr5:94146640-94146659 MsG0580029235.01.T01:intron 40.0%
! CCATCCGCATTTTCACATAA+AGG - Chr5:94147417-94147436 None:intergenic 40.0%
! CTGGAACTGCCATACTATTT+TGG - Chr5:94145485-94145504 None:intergenic 40.0%
! GTTTGTTGCCTCTTCCTAAA+GGG + Chr5:94145904-94145923 MsG0580029235.01.T01:CDS 40.0%
! TCAATGGGGAAAGCATATCA+GGG + Chr5:94146624-94146643 MsG0580029235.01.T01:intron 40.0%
! TCCGCATTTTCACATAAAGG+TGG - Chr5:94147414-94147433 None:intergenic 40.0%
! TGTTTGTTGCCTCTTCCTAA+AGG + Chr5:94145903-94145922 MsG0580029235.01.T01:CDS 40.0%
! TTCAATGGGGAAAGCATATC+AGG + Chr5:94146623-94146642 MsG0580029235.01.T01:intron 40.0%
! TTGTCGGCAGGAAAAGTTTT+TGG + Chr5:94148837-94148856 MsG0580029235.01.T01:CDS 40.0%
!! ACTCAACTAGCTTTGGATGA+GGG - Chr5:94146340-94146359 None:intergenic 40.0%
!! AGCTTTTGTTATAGCCACCA+TGG - Chr5:94147283-94147302 None:intergenic 40.0%
!! CATTTTTCAAACTGCAGCCA+TGG + Chr5:94147263-94147282 MsG0580029235.01.T01:intron 40.0%
!! GTTTTGCAATTGGTTGGTGT+TGG - Chr5:94145644-94145663 None:intergenic 40.0%
!! TACTCAACTAGCTTTGGATG+AGG - Chr5:94146341-94146360 None:intergenic 40.0%
!! TCTAAGGGTGGTTTTGCAAT+TGG - Chr5:94145654-94145673 None:intergenic 40.0%
!!! TTGTTTTTGTCGAACTGCCA+CGG + Chr5:94148401-94148420 MsG0580029235.01.T01:intron 40.0%
ACTACATTCATCACCCAGAC+TGG - Chr5:94148010-94148029 None:intergenic 45.0%
AGGAATTCCCGCAACTCTTT+CGG + Chr5:94146770-94146789 MsG0580029235.01.T01:CDS 45.0%
AGGTCAGACTGTCATTGATC+AGG - Chr5:94148327-94148346 None:intergenic 45.0%
AGGTCATTGTCACAGCTGTA+AGG - Chr5:94148307-94148326 None:intergenic 45.0%
ATGACAGTCTGACCTGAACA+TGG + Chr5:94148332-94148351 MsG0580029235.01.T01:intron 45.0%
ATGATCATGGCGGTGATGAT+GGG - Chr5:94148584-94148603 None:intergenic 45.0%
ATTTGGTCCACATCTGTAGG+TGG + Chr5:94146939-94146958 MsG0580029235.01.T01:intron 45.0%
CAAATCAGTTTCTTGTCGGC+AGG + Chr5:94148825-94148844 MsG0580029235.01.T01:CDS 45.0%
CAACACTGGGTTGTGAAATC+TGG + Chr5:94146371-94146390 MsG0580029235.01.T01:CDS 45.0%
CAATCTTGCGTTCACTACAC+TGG + Chr5:94148787-94148806 MsG0580029235.01.T01:CDS 45.0%
CAGATTTCACAACCCAGTGT+TGG - Chr5:94146373-94146392 None:intergenic 45.0%
CAGTGTAGTGAACGCAAGAT+TGG - Chr5:94148789-94148808 None:intergenic 45.0%
CATCACCGCCATGATCATAA+TGG + Chr5:94148586-94148605 MsG0580029235.01.T01:intron 45.0%
CATTCAGCTTCCTAAGCTTG+TGG - Chr5:94148867-94148886 None:intergenic 45.0%
CCAATAACCGAAAGAGTTGC+GGG - Chr5:94146780-94146799 None:intergenic 45.0%
CCCAATTCCAGATGAATCGT+CGG - Chr5:94147331-94147350 None:intergenic 45.0%
CGGATGGGAAAAATAGCTCA+TGG + Chr5:94147430-94147449 MsG0580029235.01.T01:CDS 45.0%
GAAAAGAAGAGGGTTGAAGG+TGG - Chr5:94145610-94145629 None:intergenic 45.0%
GAGTCCCATTATGATCATGG+CGG - Chr5:94148594-94148613 None:intergenic 45.0%
GATCGCATATTGAGACCAGA+TGG + Chr5:94148717-94148736 MsG0580029235.01.T01:CDS 45.0%
GCTCCAAAGCAAACTGTATC+TGG - Chr5:94146749-94146768 None:intergenic 45.0%
GCTGACGGTCTTTCGATAAA+TGG + Chr5:94147764-94147783 MsG0580029235.01.T01:CDS 45.0%
GGCTTCATGTTCATCCTTTG+GGG - Chr5:94146727-94146746 None:intergenic 45.0%
GGGCTTCATGTTCATCCTTT+GGG - Chr5:94146728-94146747 None:intergenic 45.0%
GGGTAAGGCAACTATTGAGT+CGG - Chr5:94147586-94147605 None:intergenic 45.0%
GGTAAGGCAACTATTGAGTC+GGG - Chr5:94147585-94147604 None:intergenic 45.0%
GGTTTACCCTTACCATCAAC+CGG - Chr5:94147614-94147633 None:intergenic 45.0%
GTCCTTGTTGAACTCATCAG+TGG - Chr5:94147708-94147727 None:intergenic 45.0%
GTGGCAGTTCGACAAAAACA+AGG - Chr5:94148402-94148421 None:intergenic 45.0%
TATGATCATGGCGGTGATGA+TGG - Chr5:94148585-94148604 None:intergenic 45.0%
TCTCATTGATCGACCAGTCT+GGG + Chr5:94147994-94148013 MsG0580029235.01.T01:CDS 45.0%
TCTCCACAACCACATCTACA+AGG - Chr5:94148695-94148714 None:intergenic 45.0%
TGAAGAAGATCATACGTGCG+CGG - Chr5:94148124-94148143 None:intergenic 45.0%
TGCCACTGATGAGTTCAACA+AGG + Chr5:94147703-94147722 MsG0580029235.01.T01:CDS 45.0%
TGGGCTTCATGTTCATCCTT+TGG - Chr5:94146729-94146748 None:intergenic 45.0%
TGGTCGATCAATGAGAGATG+CGG - Chr5:94147990-94148009 None:intergenic 45.0%
TTAGGAAGCTGAATGCACTC+AGG + Chr5:94148872-94148891 MsG0580029235.01.T01:exon 45.0%
TTGAATTGAGTACCACCTCC+TGG - Chr5:94146413-94146432 None:intergenic 45.0%
TTGACACTAGTTGAGACCAC+TGG - Chr5:94147736-94147755 None:intergenic 45.0%
TTGTCACAGCTGTAAGGATG+AGG - Chr5:94148301-94148320 None:intergenic 45.0%
TTTGGTCCACATCTGTAGGT+GGG + Chr5:94146940-94146959 MsG0580029235.01.T01:intron 45.0%
! AGCCCAGATACAGTTTGCTT+TGG + Chr5:94146743-94146762 MsG0580029235.01.T01:intron 45.0%
! AGGGTATCTGGGACATCAAT+GGG - Chr5:94148034-94148053 None:intergenic 45.0%
! AGTTCATTGGCCTAAGAGCA+GGG + Chr5:94145938-94145957 MsG0580029235.01.T01:CDS 45.0%
! CCGACGATTCATCTGGAATT+GGG + Chr5:94147328-94147347 MsG0580029235.01.T01:CDS 45.0%
! GACATGAATGCTGGTTATGC+AGG + Chr5:94147808-94147827 MsG0580029235.01.T01:intron 45.0%
! GTTGTTCTAGATGTTGGCTG+CGG + Chr5:94146646-94146665 MsG0580029235.01.T01:intron 45.0%
! TACCATGTCATTTGCCCCAA+AGG + Chr5:94146710-94146729 MsG0580029235.01.T01:intron 45.0%
! TTTTCAAACTGCAGCCATGG+TGG + Chr5:94147266-94147285 MsG0580029235.01.T01:intron 45.0%
!! AAGGGTATCTGGGACATCAA+TGG - Chr5:94148035-94148054 None:intergenic 45.0%
!! AGGGTGGTTTTGCAATTGGT+TGG - Chr5:94145650-94145669 None:intergenic 45.0%
!! ATACAGTTTGCTTTGGAGCG+AGG + Chr5:94146750-94146769 MsG0580029235.01.T01:CDS 45.0%
!! ATCCTTTGGGGCAAATGACA+TGG - Chr5:94146715-94146734 None:intergenic 45.0%
AAGAAGAGGGTTGAAGGTGG+TGG - Chr5:94145607-94145626 None:intergenic 50.0%
AAGATCATACGTGCGCGGAT+AGG - Chr5:94148119-94148138 None:intergenic 50.0%
ACGGGTGGTCAACTGTAGAT+CGG - Chr5:94148528-94148547 None:intergenic 50.0%
AGAGAGAGTGAGAGAGAGAG+AGG - Chr5:94145458-94145477 None:intergenic 50.0%
AGAGTTCACTGGGATGCAGA+TGG + Chr5:94146858-94146877 MsG0580029235.01.T01:CDS 50.0%
AGCTATGTGCTGGAAGGTTG+TGG + Chr5:94147299-94147318 MsG0580029235.01.T01:CDS 50.0%
CAGATGCGACCTTGTAGATG+TGG + Chr5:94148683-94148702 MsG0580029235.01.T01:intron 50.0%
CCCGCAACTCTTTCGGTTAT+TGG + Chr5:94146777-94146796 MsG0580029235.01.T01:CDS 50.0%
CCTTACCATCAACCGGAAGA+GGG - Chr5:94147607-94147626 None:intergenic 50.0%
CGACCTTGTAGATGTGGTTG+TGG + Chr5:94148689-94148708 MsG0580029235.01.T01:CDS 50.0%
CGTGCGCGGATAGGTATTAA+AGG - Chr5:94148110-94148129 None:intergenic 50.0%
CTCACCATATCCCTGCTCTT+AGG - Chr5:94145951-94145970 None:intergenic 50.0%
CTCTCATTGATCGACCAGTC+TGG + Chr5:94147993-94148012 MsG0580029235.01.T01:CDS 50.0%
CTGCTCTTAGGCCAATGAAC+TGG - Chr5:94145939-94145958 None:intergenic 50.0%
CTTACCATCAACCGGAAGAG+GGG - Chr5:94147606-94147625 None:intergenic 50.0%
GAGAGAGTGAGAGAGAGAGA+GGG - Chr5:94145457-94145476 None:intergenic 50.0%
TAGTTGCCTTACCCCTCTTC+CGG + Chr5:94147592-94147611 MsG0580029235.01.T01:CDS 50.0%
TCACAGCTGTAAGGATGAGG+AGG - Chr5:94148298-94148317 None:intergenic 50.0%
TGCACGATGCAGAGTTCACT+GGG + Chr5:94146848-94146867 MsG0580029235.01.T01:CDS 50.0%
TTGGCCTAAGAGCAGGGATA+TGG + Chr5:94145944-94145963 MsG0580029235.01.T01:CDS 50.0%
TTTCAGCTGTGAGGACGAGT+AGG + Chr5:94148436-94148455 MsG0580029235.01.T01:intron 50.0%
! CAGTTCATTGGCCTAAGAGC+AGG + Chr5:94145937-94145956 MsG0580029235.01.T01:CDS 50.0%
! GCCGACGATTCATCTGGAAT+TGG + Chr5:94147327-94147346 MsG0580029235.01.T01:CDS 50.0%
! TTTTGGCGTCCCACAAGCTT+AGG + Chr5:94148854-94148873 MsG0580029235.01.T01:CDS 50.0%
!! CCTCTTCCGGTTGATGGTAA+GGG + Chr5:94147605-94147624 MsG0580029235.01.T01:CDS 50.0%
CATCAACCGGAAGAGGGGTA+AGG - Chr5:94147601-94147620 None:intergenic 55.0%
CCCTTACCATCAACCGGAAG+AGG - Chr5:94147608-94147627 None:intergenic 55.0%
CGGTTTCCCACCTACAGATG+TGG - Chr5:94146949-94146968 None:intergenic 55.0%
CTTACCCCTCTTCCGGTTGA+TGG + Chr5:94147599-94147618 MsG0580029235.01.T01:CDS 55.0%
GACCATGCAAAGTAACCGCC+AGG - Chr5:94146999-94147018 None:intergenic 55.0%
GCTAAGGCCGACGATTCATC+TGG + Chr5:94147321-94147340 MsG0580029235.01.T01:CDS 55.0%
GGCTTACTAGTGAGCCTCTG+AGG - Chr5:94147659-94147678 None:intergenic 55.0%
GTAAGGGTAAACCGCAGAGC+TGG + Chr5:94147621-94147640 MsG0580029235.01.T01:CDS 55.0%
GTGCACGATGCAGAGTTCAC+TGG + Chr5:94146847-94146866 MsG0580029235.01.T01:CDS 55.0%
GTGCTGGAAGGTTGTGGCTA+AGG + Chr5:94147305-94147324 MsG0580029235.01.T01:CDS 55.0%
TCAACAAGGACAGCAGCCAG+TGG + Chr5:94147717-94147736 MsG0580029235.01.T01:CDS 55.0%
! AAGAGGGTTGAAGGTGGTGG+TGG - Chr5:94145604-94145623 None:intergenic 55.0%
! GACCTGGCGGTTACTTTGCA+TGG + Chr5:94146994-94147013 MsG0580029235.01.T01:CDS 55.0%
!! CCCTCTTCCGGTTGATGGTA+AGG + Chr5:94147604-94147623 MsG0580029235.01.T01:CDS 55.0%
!! TGCGGTGTTGCTAGCTTTGG+TGG + Chr5:94146664-94146683 MsG0580029235.01.T01:intron 55.0%
!! AGCCTCTGAGGCCAAGGCAT+GGG - Chr5:94147647-94147666 None:intergenic 60.0%
!! AGGGTTGAAGGTGGTGGTGG+TGG - Chr5:94145601-94145620 None:intergenic 60.0%
!! AGGTGGTGGTGGTGGTTGTG+AGG - Chr5:94145593-94145612 None:intergenic 60.0%
!! CTAGTGAGCCTCTGAGGCCA+AGG - Chr5:94147653-94147672 None:intergenic 60.0%
!! GGCTGCGGTGTTGCTAGCTT+TGG + Chr5:94146661-94146680 MsG0580029235.01.T01:intron 60.0%
!! TGGTGGTGGTGGTTGTGAGG+AGG - Chr5:94145590-94145609 None:intergenic 60.0%
CAAGGCATGGGCCAGCTCTG+CGG - Chr5:94147635-94147654 None:intergenic 65.0%
!! GAGCCTCTGAGGCCAAGGCA+TGG - Chr5:94147648-94147667 None:intergenic 65.0%
CGCAGAGCTGGCCCATGCCT+TGG + Chr5:94147633-94147652 MsG0580029235.01.T01:CDS 70.0%
GGCCCATGCCTTGGCCTCAG+AGG + Chr5:94147642-94147661 MsG0580029235.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 94145384 94149085 94145384 ID=MsG0580029235.01;Name=MsG0580029235.01
Chr5 mRNA 94145384 94149085 94145384 ID=MsG0580029235.01.T01;Parent=MsG0580029235.01;Name=MsG0580029235.01.T01;_AED=0.26;_eAED=0.26;_QI=0|0.71|0.62|1|1|1|8|210|584
Chr5 exon 94145384 94145965 94145384 ID=MsG0580029235.01.T01:exon:49765;Parent=MsG0580029235.01.T01
Chr5 exon 94146320 94146469 94146320 ID=MsG0580029235.01.T01:exon:49766;Parent=MsG0580029235.01.T01
Chr5 exon 94146750 94146879 94146750 ID=MsG0580029235.01.T01:exon:49767;Parent=MsG0580029235.01.T01
Chr5 exon 94146958 94147068 94146958 ID=MsG0580029235.01.T01:exon:49768;Parent=MsG0580029235.01.T01
Chr5 exon 94147280 94147451 94147280 ID=MsG0580029235.01.T01:exon:49769;Parent=MsG0580029235.01.T01
Chr5 exon 94147577 94147801 94147577 ID=MsG0580029235.01.T01:exon:49770;Parent=MsG0580029235.01.T01
Chr5 exon 94147982 94148176 94147982 ID=MsG0580029235.01.T01:exon:49771;Parent=MsG0580029235.01.T01
Chr5 exon 94148686 94149085 94148686 ID=MsG0580029235.01.T01:exon:49772;Parent=MsG0580029235.01.T01
Chr5 CDS 94145384 94145965 94145384 ID=MsG0580029235.01.T01:cds;Parent=MsG0580029235.01.T01
Chr5 CDS 94146320 94146469 94146320 ID=MsG0580029235.01.T01:cds;Parent=MsG0580029235.01.T01
Chr5 CDS 94146750 94146879 94146750 ID=MsG0580029235.01.T01:cds;Parent=MsG0580029235.01.T01
Chr5 CDS 94146958 94147068 94146958 ID=MsG0580029235.01.T01:cds;Parent=MsG0580029235.01.T01
Chr5 CDS 94147280 94147451 94147280 ID=MsG0580029235.01.T01:cds;Parent=MsG0580029235.01.T01
Chr5 CDS 94147577 94147801 94147577 ID=MsG0580029235.01.T01:cds;Parent=MsG0580029235.01.T01
Chr5 CDS 94147982 94148176 94147982 ID=MsG0580029235.01.T01:cds;Parent=MsG0580029235.01.T01
Chr5 CDS 94148686 94148875 94148686 ID=MsG0580029235.01.T01:cds;Parent=MsG0580029235.01.T01
Chr5 three_prime_UTR 94148876 94149085 94148876 ID=MsG0580029235.01.T01:three_prime_utr;Parent=MsG0580029235.01.T01
Gene Sequence

>MsG0580029235.01.T01

ATAGATAGATCTTGTTCTTGTTCCATTATAACATCATGTCTTATTCTTCTTCCTTATTACTATAAACACTCCCTCTCTCTCTCTCACTCTCTCTCTCTCCAAAATAGTATGGCAGTTCCAGCTGAAGATGATCACTTCTTCAAGCAAAGGAAATATCCATTCATTCTAACTCTCTCTATCTTACTCATCTCTGTCACTTTCTTCCTCCTCACAACCACCACCACCACCTTCAACCCTCTTCTTTTCTATTCTAATGTCCAACACCAACCAATTGCAAAACCACCCTTAGACTTAGATTCAGATTCTACTACAGTTTCAGAAGAACTAAAGCTTCCTTCTAAGGAAGAAGAAGAATCTCCACAAAAGGAAGAAGCTCTTAATATTGATTGGAAGCTTTGTAAGAAACCTGTGACGGTTGATTATATACCATGTTTGGATAATTATAAAGCTATTCAAGCTTTGAAATCAAGGAGGCATATGGAACATAGAGAAAGACATTGTCCTGATACTAGCTTGAAATGTTTGTTGCCTCTTCCTAAAGGGTATAAAGTTCCAGTTCATTGGCCTAAGAGCAGGGATATGATTTGGTATGATAATGTCCCTCATCCAAAGCTAGTTGAGTACAAGAAAGACCAACACTGGGTTGTGAAATCTGGTGAATATCTCATATTTCCAGGAGGTGGTACTCAATTCAAAGACGGAGTTGATCATTATATTGAGTTCATAGAAAAGATACAGTTTGCTTTGGAGCGAGGAATTCCCGCAACTCTTTCGGTTATTGGAACACAAAAGTTGACTTTTCCTGACAATGGTTTTGATTTGATTCATTGTGCACGATGCAGAGTTCACTGGGATGCAGATGGTGGGAAACCGTTATACGAACTCAATAGGATTCTTAGACCTGGCGGTTACTTTGCATGGTCTGCAACACCAGTTTATCGTGATGATGATCGAGATCAGAAAGTTTGGAAAGCCATGGTGGCTATAACAAAAGCTATGTGCTGGAAGGTTGTGGCTAAGGCCGACGATTCATCTGGAATTGGGCTTGTTATATACCAGAAGCCTACTTCATCTTCTTGTTACGAGAAACGTGCAGAGAACAATCCACCTTTATGTGAAAATGCGGATGGGAAAAATAGCTCATGGTATGCCCGACTCAATAGTTGCCTTACCCCTCTTCCGGTTGATGGTAAGGGTAAACCGCAGAGCTGGCCCATGCCTTGGCCTCAGAGGCTCACTAGTAAGCCTCCTAGCTTACCTAATGATTCAGATGCCACTGATGAGTTCAACAAGGACAGCAGCCAGTGGTCTCAACTAGTGTCAAATGTTTATGCTGACGGTCTTTCGATAAATGGTCAAGTGTTCGAAATATTTGCCGCATCTCTCATTGATCGACCAGTCTGGGTGATGAATGTAGTACCCATTGATGTCCCAGATACCCTTTCTATTATATTGGACCGAGGATTAATAGGAATGTATCATGATTGGTGCGAGTCCTTTAATACCTATCCGCGCACGTATGATCTTCTTCATGCTAGCTTTCTTTTCAAACATCTTGAGCAAAGATGCGACCTTGTAGATGTGGTTGTGGAGATAGATCGCATATTGAGACCAGATGGATATCTTGTGATTCATGATTCCATGGAAATGCTTAACAAACTCGGTCCAATCTTGCGTTCACTACACTGGTCTGTAACGTTGCATCAAATCAGTTTCTTGTCGGCAGGAAAAGTTTTTGGCGTCCCACAAGCTTAG
Protein sequence

>MsG0580029235.01.T01

IDRSCSCSIITSCLILLPYYYKHSLSLSHSLSLQNSMAVPAEDDHFFKQRKYPFILTLSILLISVTFFLLTTTTTTFNPLLFYSNVQHQPIAKPPLDLDSDSTTVSEELKLPSKEEEESPQKEEALNIDWKLCKKPVTVDYIPCLDNYKAIQALKSRRHMEHRERHCPDTSLKCLLPLPKGYKVPVHWPKSRDMIWYDNVPHPKLVEYKKDQHWVVKSGEYLIFPGGGTQFKDGVDHYIEFIEKIQFALERGIPATLSVIGTQKLTFPDNGFDLIHCARCRVHWDADGGKPLYELNRILRPGGYFAWSATPVYRDDDRDQKVWKAMVAITKAMCWKVVAKADDSSGIGLVIYQKPTSSSCYEKRAENNPPLCENADGKNSSWYARLNSCLTPLPVDGKGKPQSWPMPWPQRLTSKPPSLPNDSDATDEFNKDSSQWSQLVSNVYADGLSINGQVFEIFAASLIDRPVWVMNVVPIDVPDTLSIILDRGLIGMYHDWCESFNTYPRTYDLLHASFLFKHLEQRCDLVDVVVEIDRILRPDGYLVIHDSMEMLNKLGPILRSLHWSVTLHQISFLSAGKVFGVPQA*