AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003404.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003404.01.T01 MTR_1g061050 98.780 328 4 0 1 328 1 328 0.0 666
MsG0180003404.01.T01 MTR_5g069055 85.366 328 48 0 1 328 1 328 0.0 583
MsG0180003404.01.T01 MTR_5g096670 78.049 328 72 0 1 328 1 328 0.0 537
MsG0180003404.01.T01 MTR_5g069050 78.354 328 56 1 1 328 42 354 0.0 521
MsG0180003404.01.T01 MTR_4g057670 57.143 322 134 3 8 328 53 371 1.49e-125 365
MsG0180003404.01.T01 MTR_4g071860 57.143 322 134 3 8 328 53 371 1.97e-125 365
MsG0180003404.01.T01 MTR_1g109200 54.908 326 143 3 4 328 40 362 4.17e-124 362
MsG0180003404.01.T01 MTR_4g071880 50.769 325 138 5 8 328 51 357 1.59e-103 309
MsG0180003404.01.T01 MTR_7g103920 69.792 96 4 1 112 207 11 81 2.10e-37 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003404.01.T01 AT2G36460 87.805 328 40 0 1 328 1 328 0.0 595
MsG0180003404.01.T01 AT3G52930 86.585 328 44 0 1 328 1 328 0.0 585
MsG0180003404.01.T01 AT5G03690 86.322 329 44 1 1 328 1 329 0.0 561
MsG0180003404.01.T01 AT5G03690 86.834 319 41 1 11 328 45 363 0.0 547
MsG0180003404.01.T01 AT4G26530 80.734 327 63 0 1 327 1 327 0.0 546
MsG0180003404.01.T01 AT4G26530 80.734 327 63 0 1 327 1 327 0.0 546
MsG0180003404.01.T01 AT4G26530 80.734 327 63 0 1 327 1 327 0.0 546
MsG0180003404.01.T01 AT4G26520 76.220 328 78 0 1 328 1 328 0.0 513
MsG0180003404.01.T01 AT4G26520 76.220 328 78 0 1 328 1 328 0.0 512
MsG0180003404.01.T01 AT4G26520 76.176 319 76 0 10 328 7 325 2.55e-178 498
MsG0180003404.01.T01 AT4G26520 76.176 319 76 0 10 328 7 325 2.55e-178 498
MsG0180003404.01.T01 AT2G36460 89.030 237 26 0 92 328 1 237 1.30e-155 437
MsG0180003404.01.T01 AT2G36460 89.030 237 26 0 92 328 1 237 1.30e-155 437
MsG0180003404.01.T01 AT5G03690 87.764 237 28 1 93 328 1 237 1.15e-143 406
MsG0180003404.01.T01 AT5G03690 87.764 237 28 1 93 328 1 237 1.15e-143 406
MsG0180003404.01.T01 AT4G38970 57.099 324 135 3 6 328 49 369 2.29e-126 367
MsG0180003404.01.T01 AT2G01140 56.522 322 136 3 8 328 44 362 6.46e-124 361
MsG0180003404.01.T01 AT2G21330 55.864 324 139 3 6 328 50 370 2.08e-123 360
MsG0180003404.01.T01 AT2G21330 53.704 324 136 4 6 328 50 360 2.32e-114 337
MsG0180003404.01.T01 AT4G38970 55.985 259 112 2 6 263 49 306 8.11e-95 286
MsG0180003404.01.T01 AT2G21330 54.054 259 117 2 6 263 50 307 1.14e-92 279

Find 107 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTCTGATTGAACTTGTTT+TGG 0.229590 1:-61843769 MsG0180003404.01.T01:three_prime_UTR
ATTGCCAATGCTGCTTATAT+TGG 0.273936 1:-61845438 MsG0180003404.01.T01:CDS
TGGACTCTTACATTCTCTTA+TGG 0.280031 1:-61843998 MsG0180003404.01.T01:CDS
AGCAATGCAGCTTGAGCTTT+AGG 0.286122 1:+61843920 None:intergenic
CTCAAGCTGCATTGCTTGTT+AGG 0.288958 1:-61843913 MsG0180003404.01.T01:CDS
GATCCTGGTGTAACCATATT+AGG 0.309736 1:+61844190 None:intergenic
GAAGAAAGCTGGAGTTCTTC+CGG 0.325790 1:-61844587 MsG0180003404.01.T01:CDS
GACAAGGGAGATGGTTCATT+TGG 0.333091 1:+61844415 None:intergenic
TCAAGCTGAACTGGCTTGAT+TGG 0.334716 1:-61843652 MsG0180003404.01.T01:three_prime_UTR
AATTGTAGAGCCTGAGATTC+TGG 0.346103 1:-61844326 MsG0180003404.01.T01:CDS
AGCAGCAAGGATACCCTTTC+CGG 0.352251 1:+61845410 None:intergenic
TAATGCAATGAACAAACTTA+AGG 0.360057 1:-61844032 MsG0180003404.01.T01:CDS
CAAAGCTCGGACTGTGTATT+GGG 0.362649 1:+61844135 None:intergenic
ATAACCTCAGGAGCAACTTT+AGG 0.366412 1:+61844160 None:intergenic
CCGGTGCAAGGTTCGCTAAA+TGG 0.381985 1:-61844459 MsG0180003404.01.T01:CDS
TTGTGGTAAAGTATCAATAA+TGG 0.382123 1:-61843677 MsG0180003404.01.T01:three_prime_UTR
TTCAGAGTCTCTTCATGTTA+AGG 0.387381 1:-61843826 MsG0180003404.01.T01:three_prime_UTR
AGTTGTATGCATCATGGTTA+TGG 0.395562 1:-61843746 MsG0180003404.01.T01:three_prime_UTR
ACAAAGCTCGGACTGTGTAT+TGG 0.406244 1:+61844134 None:intergenic
GTTGAACTTGCCGGCACAAA+TGG 0.411220 1:-61844541 MsG0180003404.01.T01:CDS
GATGAATCTACTGGCACAAT+TGG 0.412825 1:-61845387 MsG0180003404.01.T01:CDS
CGTTCTTGCAGCATGTTACA+AGG 0.413588 1:-61844257 MsG0180003404.01.T01:CDS
GAACTCTTGTTCACTGCCCC+TGG 0.414062 1:-61845306 MsG0180003404.01.T01:CDS
AAGAAAGCTGGAGTTCTTCC+GGG 0.415915 1:-61844586 MsG0180003404.01.T01:CDS
AATGCAATGAACAAACTTAA+GGG 0.427010 1:-61844031 MsG0180003404.01.T01:CDS
GACCATCATGTTCTTCTTGA+AGG 0.430660 1:-61844226 MsG0180003404.01.T01:CDS
ATAATGGCTTCAAGCTGAAC+TGG 0.434807 1:-61843661 MsG0180003404.01.T01:three_prime_UTR
AAGGGAACCGTTGAACTTGC+CGG 0.435648 1:-61844550 MsG0180003404.01.T01:CDS
AGAATCTCAGGCTCTACAAT+TGG 0.441636 1:+61844328 None:intergenic
CTTGAAAGAAGACATGTTAG+TGG 0.447312 1:+61846732 None:intergenic
GCAGCAAGGATACCCTTTCC+GGG 0.463973 1:+61845411 None:intergenic
CCCTTGTCAACCTTGATACC+CGG 0.464933 1:+61844568 None:intergenic
GCTGCTTATATTGGCTCTCC+CGG 0.465324 1:-61845429 MsG0180003404.01.T01:CDS
GATCCATCCACCAGAATCTC+AGG 0.468903 1:+61844316 None:intergenic
AGAAACCACAACTCAAGGTT+TGG 0.472063 1:-61844518 MsG0180003404.01.T01:CDS
AACTTAAGGGAAAGAAGCCT+TGG 0.474897 1:-61844018 MsG0180003404.01.T01:CDS
CAAATACTAATATGTTAAAG+AGG 0.476989 1:-61843799 MsG0180003404.01.T01:three_prime_UTR
TGGAGTTCTTCCGGGTATCA+AGG 0.478690 1:-61844578 MsG0180003404.01.T01:CDS
GCCGTCATATGCCAAGAGAA+TGG 0.489726 1:-61844358 MsG0180003404.01.T01:CDS
TTGGAACCAAACCATTCTCT+TGG 0.499681 1:+61844347 None:intergenic
ACTTCAGCAAAGTACTCTTA+AGG 0.501897 1:-61843969 MsG0180003404.01.T01:CDS
TATATTGGCTCTCCCGGAAA+GGG 0.502381 1:-61845423 MsG0180003404.01.T01:CDS
TTCTTCAACACATCCACAAA+GGG 0.502730 1:+61844604 None:intergenic
GCAAAGTACTCTTAAGGCAT+GGG 0.512733 1:-61843963 MsG0180003404.01.T01:CDS
GTTGCGAACCGTTCCTGCCG+CGG 0.513144 1:-61844113 MsG0180003404.01.T01:CDS
CTTGCTGCTGATGAATCTAC+TGG 0.520412 1:-61845396 MsG0180003404.01.T01:CDS
GTGTATTGGGCTATAACCTC+AGG 0.520695 1:+61844148 None:intergenic
TCGTGGATTGACAAGGGAGA+TGG 0.521733 1:+61844406 None:intergenic
CTCTTACATTCTCTTATGGA+AGG 0.525023 1:-61843994 MsG0180003404.01.T01:CDS
GTGGATGTGTTGAAGAAAGC+TGG 0.525235 1:-61844598 MsG0180003404.01.T01:CDS
ACTATAGCAGGAACCGCGGC+AGG 0.528273 1:+61844100 None:intergenic
TGTGGTTTCTCCATTTGTGC+CGG 0.528303 1:+61844531 None:intergenic
AGCAGGAACCGCGGCAGGAA+CGG 0.528619 1:+61844105 None:intergenic
CTGAGGCAGTCTAAACAACC+AGG 0.529230 1:+61845288 None:intergenic
AGCAAAGTACTCTTAAGGCA+TGG 0.530894 1:-61843964 MsG0180003404.01.T01:CDS
TAAGAGAATGTAAGAGTCCA+AGG 0.537565 1:+61844001 None:intergenic
CTCTCCTAAAGTTGCTCCTG+AGG 0.537898 1:-61844164 MsG0180003404.01.T01:CDS
GCAACTCTAGGAACTTATCA+AGG 0.543212 1:-61843873 MsG0180003404.01.T01:exon
TCAATCCACGAAAACGCCTA+CGG 0.549910 1:-61844394 MsG0180003404.01.T01:CDS
ACTTTAGGAGAGTCTGATCC+TGG 0.549951 1:+61844175 None:intergenic
ATTTGTGCCGGCAAGTTCAA+CGG 0.550481 1:+61844543 None:intergenic
TTATATTGGCTCTCCCGGAA+AGG 0.551511 1:-61845424 MsG0180003404.01.T01:CDS
AGAGCCAATATAAGCAGCAT+TGG 0.554374 1:+61845434 None:intergenic
CCAGACAAGAAAACTATAGC+AGG 0.555235 1:+61844088 None:intergenic
ACCATTCTCTTGGCATATGA+CGG 0.555382 1:+61844357 None:intergenic
CCATTTAGCGAACCTTGCAC+CGG 0.555662 1:+61844459 None:intergenic
TGCAAGAAGTACTATGAAGC+CGG 0.557100 1:-61844478 MsG0180003404.01.T01:CDS
TCTTTCAAGAGCAAATATGA+AGG 0.558115 1:-61846718 MsG0180003404.01.T01:intron
GAACGGTTCGCAACAAAGCT+CGG 0.563519 1:+61844122 None:intergenic
GTGTATAGGAGTACCCTTTG+TGG 0.565160 1:-61844617 MsG0180003404.01.T01:intron
TATCAAGGTAATGCTAACCT+TGG 0.568421 1:-61843858 MsG0180003404.01.T01:three_prime_UTR
GAGCCTGAGATTCTGGTGGA+TGG 0.575735 1:-61844319 MsG0180003404.01.T01:CDS
TGGCGTGCCGTGCTAAAGAT+CGG 0.577059 1:-61844439 MsG0180003404.01.T01:CDS
AATGGAGAAACCACAACTCA+AGG 0.579845 1:-61844523 MsG0180003404.01.T01:CDS
CATATGCCAAGAGAATGGTT+TGG 0.584136 1:-61844353 MsG0180003404.01.T01:CDS
GTCATCCAAACCTTGAGTTG+TGG 0.586628 1:+61844513 None:intergenic
AGTACTATGAAGCCGGTGCA+AGG 0.593122 1:-61844471 MsG0180003404.01.T01:CDS
ACTCAAGGTTTGGATGACCT+TGG 0.593476 1:-61844508 MsG0180003404.01.T01:CDS
TTCGCGAAGAGTACGTCTGT+TGG 0.596179 1:+61845326 None:intergenic
ACTTCTTGCACCTCTGACCA+AGG 0.600417 1:+61844491 None:intergenic
TCCGGGTATCAAGGTTGACA+AGG 0.600493 1:-61844569 MsG0180003404.01.T01:CDS
GTTTGGATGACCTTGGTCAG+AGG 0.601427 1:-61844501 MsG0180003404.01.T01:CDS
AGAATCCATACTACCTGCAG+CGG 0.606136 1:+61845227 None:intergenic
AAGCCTAATATGGTTACACC+AGG 0.609198 1:-61844193 MsG0180003404.01.T01:CDS
AAATACTAATATGTTAAAGA+GGG 0.613786 1:-61843798 MsG0180003404.01.T01:three_prime_UTR
AAAAGTGTAAAGCAGAAAGT+GGG 0.614949 1:-61843503 MsG0180003404.01.T01:three_prime_UTR
TCTTACATTCTCTTATGGAA+GGG 0.615325 1:-61843993 MsG0180003404.01.T01:CDS
ATTTGGACCGATCTTTAGCA+CGG 0.615328 1:+61844432 None:intergenic
CAGTAGATTCATCAGCAGCA+AGG 0.619396 1:+61845397 None:intergenic
AGCAATTCAGAAGCAACTCT+AGG 0.619717 1:-61843885 MsG0180003404.01.T01:exon
TTTCTTCAACACATCCACAA+AGG 0.625245 1:+61844603 None:intergenic
GTCTGGTGGACAAAGTGAAG+AGG 0.625664 1:-61844071 MsG0180003404.01.T01:CDS
AGTACTCTTAAGGCATGGGG+TGG 0.629413 1:-61843959 MsG0180003404.01.T01:CDS
GGTTGTTTAGACTGCCTCAG+TGG 0.642712 1:-61845285 MsG0180003404.01.T01:CDS
TACCTTCAAGAAGAACATGA+TGG 0.642921 1:+61844224 None:intergenic
ATATGTTAAAGAGGGTTGTG+AGG 0.648981 1:-61843790 MsG0180003404.01.T01:three_prime_UTR
CAAAGTACTCTTAAGGCATG+GGG 0.654273 1:-61843962 MsG0180003404.01.T01:CDS
GGTAATGCTAACCTTGGTGA+TGG 0.655737 1:-61843852 MsG0180003404.01.T01:three_prime_UTR
CCGGGTATCAAGGTTGACAA+GGG 0.663397 1:-61844568 MsG0180003404.01.T01:CDS
TGAGGCAGTCTAAACAACCA+GGG 0.687038 1:+61845289 None:intergenic
TGTAGAGCCTGAGATTCTGG+TGG 0.689189 1:-61844323 MsG0180003404.01.T01:CDS
GAAAACTATAGCAGGAACCG+CGG 0.691811 1:+61844096 None:intergenic
GCGATTTGCTAGCATCAATG+TGG 0.693197 1:-61845361 MsG0180003404.01.T01:CDS
GAGGCAGTCTAAACAACCAG+GGG 0.707381 1:+61845290 None:intergenic
ACTCTGAAGCACCATCACCA+AGG 0.713624 1:+61843841 None:intergenic
GGCATAACGAGCTAAACCGT+AGG 0.727129 1:+61844378 None:intergenic
CGAACAAGATAACACCACTG+AGG 0.795503 1:+61845271 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATACATAAAAATCAAA+AGG + Chr1:61844018-61844037 None:intergenic 10.0%
!! AAATACTAATATGTTAAAGA+GGG - Chr1:61846455-61846474 MsG0180003404.01.T01:intron 15.0%
!! TTAAATAAGTAAATCCAAAA+AGG + Chr1:61845190-61845209 None:intergenic 15.0%
!!! ACTTATTTAAAGTAATCTAT+TGG - Chr1:61845200-61845219 MsG0180003404.01.T01:intron 15.0%
!!! ATCTTCTTTATGAAATATTT+TGG - Chr1:61844664-61844683 MsG0180003404.01.T01:intron 15.0%
!!! TATCAGATTAAATTTTCATA+TGG + Chr1:61844414-61844433 None:intergenic 15.0%
!!! TTTTTATCTTTCATAGATAT+CGG - Chr1:61845156-61845175 MsG0180003404.01.T01:intron 15.0%
!!! TTTTTTTCTTTTCGTTTTAT+AGG - Chr1:61843598-61843617 MsG0180003404.01.T01:three_prime_UTR 15.0%
!! AATAAACTTAAAACAGCTTA+AGG + Chr1:61845272-61845291 None:intergenic 20.0%
!! CAAATACTAATATGTTAAAG+AGG - Chr1:61846454-61846473 MsG0180003404.01.T01:intron 20.0%
!!! AAATTTTGAAAGAAAAGACA+TGG + Chr1:61845454-61845473 None:intergenic 20.0%
!!! AATAGTGTTTGTTTTTGTTT+AGG - Chr1:61846549-61846568 MsG0180003404.01.T01:intron 20.0%
!!! AATGTTTATTTTGAATTAGC+AGG - Chr1:61845103-61845122 MsG0180003404.01.T01:intron 20.0%
!!! TACTTTGTTTGACAAAATTA+CGG - Chr1:61844238-61844257 MsG0180003404.01.T01:CDS 20.0%
!!! TTCTAAAAGTAGTAAAAAAG+AGG - Chr1:61843920-61843939 MsG0180003404.01.T01:CDS 20.0%
!!! TTTTGACATCAAAATTTTGA+TGG - Chr1:61843981-61844000 MsG0180003404.01.T01:CDS 20.0%
! AATGCAATGAACAAACTTAA+GGG - Chr1:61846222-61846241 MsG0180003404.01.T01:intron 25.0%
! AATTAAGATGTTTGACTCTT+TGG + Chr1:61844472-61844491 None:intergenic 25.0%
! AGTAGTAAAAAAGAGGAAAA+AGG - Chr1:61843927-61843946 MsG0180003404.01.T01:CDS 25.0%
! GTTCGATTCATAAAACTAAA+GGG - Chr1:61844372-61844391 MsG0180003404.01.T01:CDS 25.0%
! TAATGCAATGAACAAACTTA+AGG - Chr1:61846221-61846240 MsG0180003404.01.T01:intron 25.0%
! TCAAGTAAAAATATGTCATG+TGG - Chr1:61843846-61843865 MsG0180003404.01.T01:three_prime_UTR 25.0%
!! AATTTTGTACTTACTTCTTG+TGG - Chr1:61844709-61844728 MsG0180003404.01.T01:intron 25.0%
!! ATATAAGCTATAAACCGTTT+TGG + Chr1:61845320-61845339 None:intergenic 25.0%
!! TCTATTTGTTGAAGTTTCTA+AGG - Chr1:61844766-61844785 MsG0180003404.01.T01:intron 25.0%
!! TGAAAAGCTTAACTCAATTT+TGG - Chr1:61844622-61844641 MsG0180003404.01.T01:intron 25.0%
!! TTGTGGTAAAGTATCAATAA+TGG - Chr1:61846576-61846595 MsG0180003404.01.T01:intron 25.0%
!!! TATTTTGGAAAAAAGTTGCT+AGG - Chr1:61844679-61844698 MsG0180003404.01.T01:intron 25.0%
!!! TTGGCATTTATTTTTCAACA+TGG - Chr1:61846620-61846639 MsG0180003404.01.T01:intron 25.0%
!!! TTTTTTGTTACACACACTTT+TGG + Chr1:61846734-61846753 None:intergenic 25.0%
AATCGTTGACATCTAAATCT+AGG + Chr1:61845137-61845156 None:intergenic 30.0%
ACAGTTGAGAAAAAAGTTAG+AGG + Chr1:61845618-61845637 None:intergenic 30.0%
CATGAATGATCAAGAAACAA+AGG + Chr1:61843633-61843652 None:intergenic 30.0%
GAAACATACACTAAGGAATA+AGG - Chr1:61844350-61844369 MsG0180003404.01.T01:CDS 30.0%
GGTTCGATTCATAAAACTAA+AGG - Chr1:61844371-61844390 MsG0180003404.01.T01:CDS 30.0%
GTTGTGTGAAAAATGTATGA+TGG + Chr1:61846668-61846687 None:intergenic 30.0%
TAAACACTTACGAGACTATT+TGG - Chr1:61845225-61845244 MsG0180003404.01.T01:intron 30.0%
TAAATAAGCGCTTCTCATAT+AGG + Chr1:61845400-61845419 None:intergenic 30.0%
TCCTTAGTGTATGTTTCAAT+TGG + Chr1:61844347-61844366 None:intergenic 30.0%
TCTTACATTCTCTTATGGAA+GGG - Chr1:61846260-61846279 MsG0180003404.01.T01:intron 30.0%
TCTTTCAAGAGCAAATATGA+AGG - Chr1:61843535-61843554 MsG0180003404.01.T01:three_prime_UTR 30.0%
TTATTTCCATATGTTCTCCA+GGG - Chr1:61845287-61845306 MsG0180003404.01.T01:CDS 30.0%
TTTATTTCCATATGTTCTCC+AGG - Chr1:61845286-61845305 MsG0180003404.01.T01:CDS 30.0%
TTTGAAAGAAAAGACATGGA+AGG + Chr1:61845450-61845469 None:intergenic 30.0%
! AAAAAGTGTAAAGCAGAAAG+TGG - Chr1:61846749-61846768 MsG0180003404.01.T01:five_prime_UTR 30.0%
! AAAAGTGTAAAGCAGAAAGT+GGG - Chr1:61846750-61846769 MsG0180003404.01.T01:five_prime_UTR 30.0%
! ATGTTACACTAGCTTCATTT+AGG - Chr1:61843650-61843669 MsG0180003404.01.T01:three_prime_UTR 30.0%
! ATTTTTGCCAAAAATTACCG+TGG - Chr1:61844294-61844313 MsG0180003404.01.T01:CDS 30.0%
! CAGAACTAGTTGAGTATTTT+GGG - Chr1:61843821-61843840 MsG0180003404.01.T01:three_prime_UTR 30.0%
! CTATTTACCACGGTAATTTT+TGG + Chr1:61844304-61844323 None:intergenic 30.0%
! TTCATCATCTAGTGTGTTTT+TGG - Chr1:61843568-61843587 MsG0180003404.01.T01:three_prime_UTR 30.0%
!! TTTCATAGATATCGGCTTTA+AGG - Chr1:61845164-61845183 MsG0180003404.01.T01:intron 30.0%
!!! CTTTTTTCTCAACTGTGTAT+AGG - Chr1:61845622-61845641 MsG0180003404.01.T01:intron 30.0%
!!! GTGTTTGTTTTTGTTTAGGT+TGG - Chr1:61846553-61846572 MsG0180003404.01.T01:intron 30.0%
!!! TACTCTTTTGAAGCCTAATA+TGG - Chr1:61846050-61846069 MsG0180003404.01.T01:intron 30.0%
!!! TTGTGTTTGTTTTGTGTGAT+GGG + Chr1:61843471-61843490 None:intergenic 30.0%
AACCACATTCTATTAGCTAG+TGG + Chr1:61844181-61844200 None:intergenic 35.0%
ACACTCTTCTCTATTCATCT+AGG + Chr1:61843743-61843762 None:intergenic 35.0%
AGTTGTATGCATCATGGTTA+TGG - Chr1:61846507-61846526 MsG0180003404.01.T01:intron 35.0%
ATATGTTAAAGAGGGTTGTG+AGG - Chr1:61846463-61846482 MsG0180003404.01.T01:intron 35.0%
ATTGAGATGCAAATGCATCA+CGG + Chr1:61845550-61845569 None:intergenic 35.0%
CTAATAATCCGTGCAACAAA+AGG - Chr1:61844561-61844580 MsG0180003404.01.T01:CDS 35.0%
CTCTTACATTCTCTTATGGA+AGG - Chr1:61846259-61846278 MsG0180003404.01.T01:intron 35.0%
CTTGAAAGAAGACATGTTAG+TGG + Chr1:61843524-61843543 None:intergenic 35.0%
GCCAATTGAAACATACACTA+AGG - Chr1:61844343-61844362 MsG0180003404.01.T01:CDS 35.0%
GTTGACATCTAAATCTAGGA+TGG + Chr1:61845133-61845152 None:intergenic 35.0%
TAAGAGAATGTAAGAGTCCA+AGG + Chr1:61846255-61846274 None:intergenic 35.0%
TACCTTCAAGAAGAACATGA+TGG + Chr1:61846032-61846051 None:intergenic 35.0%
TATCAAGGTAATGCTAACCT+TGG - Chr1:61846395-61846414 MsG0180003404.01.T01:intron 35.0%
TGATAGTAGATTGCAATCTC+TGG - Chr1:61844429-61844448 MsG0180003404.01.T01:CDS 35.0%
TGGACTCTTACATTCTCTTA+TGG - Chr1:61846255-61846274 MsG0180003404.01.T01:intron 35.0%
TTCAGAGTCTCTTCATGTTA+AGG - Chr1:61846427-61846446 MsG0180003404.01.T01:intron 35.0%
TTCTATTAGCAACTAGCAGT+TGG - Chr1:61844199-61844218 MsG0180003404.01.T01:CDS 35.0%
TTCTTCAACACATCCACAAA+GGG + Chr1:61845652-61845671 None:intergenic 35.0%
TTTAACAAATTCTCGTCGTG+TGG - Chr1:61845472-61845491 MsG0180003404.01.T01:intron 35.0%
TTTCTTCAACACATCCACAA+AGG + Chr1:61845653-61845672 None:intergenic 35.0%
! ACTTCAGCAAAGTACTCTTA+AGG - Chr1:61846284-61846303 MsG0180003404.01.T01:intron 35.0%
! ATTGCCAATGCTGCTTATAT+TGG - Chr1:61844815-61844834 MsG0180003404.01.T01:intron 35.0%
! ATTTATCGCCTTTTGTTGCA+CGG + Chr1:61844572-61844591 None:intergenic 35.0%
! CACTAGCTTCATTTAGGTAT+CGG - Chr1:61843656-61843675 MsG0180003404.01.T01:three_prime_UTR 35.0%
! GACTGCAAACTTTTATACTG+TGG - Chr1:61843878-61843897 MsG0180003404.01.T01:exon 35.0%
! GCAGAACTAGTTGAGTATTT+TGG - Chr1:61843820-61843839 MsG0180003404.01.T01:three_prime_UTR 35.0%
!!! CTTGTGTTTGTTTTGTGTGA+TGG + Chr1:61843472-61843491 None:intergenic 35.0%
!!! GGTTATGGTGCTATTTTGTA+GGG - Chr1:61846522-61846541 MsG0180003404.01.T01:intron 35.0%
!!! GTTTTTGTTTAGGTTGGTTG+TGG - Chr1:61846559-61846578 MsG0180003404.01.T01:intron 35.0%
!!! TGGTTATGGTGCTATTTTGT+AGG - Chr1:61846521-61846540 MsG0180003404.01.T01:intron 35.0%
!!! TTTTGGAGTTGTATGCATCA+TGG - Chr1:61846501-61846520 MsG0180003404.01.T01:intron 35.0%
AACTTAAGGGAAAGAAGCCT+TGG - Chr1:61846235-61846254 MsG0180003404.01.T01:intron 40.0%
AAGCCTAATATGGTTACACC+AGG - Chr1:61846060-61846079 MsG0180003404.01.T01:intron 40.0%
AATGGAGAAACCACAACTCA+AGG - Chr1:61845730-61845749 MsG0180003404.01.T01:intron 40.0%
AATTGTAGAGCCTGAGATTC+TGG - Chr1:61845927-61845946 MsG0180003404.01.T01:intron 40.0%
ACCATTCTCTTGGCATATGA+CGG + Chr1:61845899-61845918 None:intergenic 40.0%
AGAAACCACAACTCAAGGTT+TGG - Chr1:61845735-61845754 MsG0180003404.01.T01:intron 40.0%
AGAATCTCAGGCTCTACAAT+TGG + Chr1:61845928-61845947 None:intergenic 40.0%
AGAGCCAATATAAGCAGCAT+TGG + Chr1:61844822-61844841 None:intergenic 40.0%
AGCAATTCAGAAGCAACTCT+AGG - Chr1:61846368-61846387 MsG0180003404.01.T01:intron 40.0%
ATAACCTCAGGAGCAACTTT+AGG + Chr1:61846096-61846115 None:intergenic 40.0%
ATAATGGCTTCAAGCTGAAC+TGG - Chr1:61846592-61846611 MsG0180003404.01.T01:intron 40.0%
ATTTGGACCGATCTTTAGCA+CGG + Chr1:61845824-61845843 None:intergenic 40.0%
CACCACTAGCTAATAGAATG+TGG - Chr1:61844176-61844195 MsG0180003404.01.T01:CDS 40.0%
CATATGCCAAGAGAATGGTT+TGG - Chr1:61845900-61845919 MsG0180003404.01.T01:intron 40.0%
CCAGACAAGAAAACTATAGC+AGG + Chr1:61846168-61846187 None:intergenic 40.0%
CTATATCAAAAAACCGCTGC+AGG - Chr1:61845013-61845032 MsG0180003404.01.T01:intron 40.0%
GACAAAATTACGGTCGAATG+TGG - Chr1:61844248-61844267 MsG0180003404.01.T01:CDS 40.0%
GACCATCATGTTCTTCTTGA+AGG - Chr1:61846027-61846046 MsG0180003404.01.T01:intron 40.0%
GATCCTGGTGTAACCATATT+AGG + Chr1:61846066-61846085 None:intergenic 40.0%
GATGAATCTACTGGCACAAT+TGG - Chr1:61844866-61844885 MsG0180003404.01.T01:intron 40.0%
GGCAGAATCACTATTTACCA+CGG + Chr1:61844314-61844333 None:intergenic 40.0%
GTTTCAATTGGCAGCGATTA+TGG + Chr1:61844335-61844354 None:intergenic 40.0%
TTGAGATGCAAATGCATCAC+GGG + Chr1:61845549-61845568 None:intergenic 40.0%
TTGGAACCAAACCATTCTCT+TGG + Chr1:61845909-61845928 None:intergenic 40.0%
! AGCAAAGTACTCTTAAGGCA+TGG - Chr1:61846289-61846308 MsG0180003404.01.T01:intron 40.0%
! CAAAGTACTCTTAAGGCATG+GGG - Chr1:61846291-61846310 MsG0180003404.01.T01:intron 40.0%
! CCTGCTATAGTTTTCTTGTC+TGG - Chr1:61846165-61846184 MsG0180003404.01.T01:intron 40.0%
! GATGAATAGAGAAGAGTGTG+TGG - Chr1:61843744-61843763 MsG0180003404.01.T01:three_prime_UTR 40.0%
! GCAAAGTACTCTTAAGGCAT+GGG - Chr1:61846290-61846309 MsG0180003404.01.T01:intron 40.0%
! GCAACTCTAGGAACTTATCA+AGG - Chr1:61846380-61846399 MsG0180003404.01.T01:intron 40.0%
! GCTATAGTTTTCTTGTCTGG+TGG - Chr1:61846168-61846187 MsG0180003404.01.T01:intron 40.0%
!! AGCAAGATTCTAGTCTTGCT+TGG - Chr1:61844144-61844163 MsG0180003404.01.T01:CDS 40.0%
!! ATTCTAGTCTTGCTTGGGAT+TGG - Chr1:61844150-61844169 MsG0180003404.01.T01:CDS 40.0%
!! GCAAGATTCTAGTCTTGCTT+GGG - Chr1:61844145-61844164 MsG0180003404.01.T01:CDS 40.0%
!! GGCTCTGATTGAACTTGTTT+TGG - Chr1:61846484-61846503 MsG0180003404.01.T01:intron 40.0%
!! TGCAAGAAGTACTATGAAGC+CGG - Chr1:61845775-61845794 MsG0180003404.01.T01:intron 40.0%
!!! TATCGGCTTTAAGGCCTTTT+TGG - Chr1:61845173-61845192 MsG0180003404.01.T01:intron 40.0%
AAAAACCGCTGCAGGTAGTA+TGG - Chr1:61845021-61845040 MsG0180003404.01.T01:intron 45.0%
AAGAAAGCTGGAGTTCTTCC+GGG - Chr1:61845667-61845686 MsG0180003404.01.T01:intron 45.0%
ACAAAGCTCGGACTGTGTAT+TGG + Chr1:61846122-61846141 None:intergenic 45.0%
ACTCAAGGTTTGGATGACCT+TGG - Chr1:61845745-61845764 MsG0180003404.01.T01:intron 45.0%
AGAATCCATACTACCTGCAG+CGG + Chr1:61845029-61845048 None:intergenic 45.0%
AGCAATGCAGCTTGAGCTTT+AGG + Chr1:61846336-61846355 None:intergenic 45.0%
ATGCTACCCTGGAGAACATA+TGG + Chr1:61845296-61845315 None:intergenic 45.0%
CAAAGCTCGGACTGTGTATT+GGG + Chr1:61846121-61846140 None:intergenic 45.0%
CAGTAGATTCATCAGCAGCA+AGG + Chr1:61844859-61844878 None:intergenic 45.0%
CGAACAAGATAACACCACTG+AGG + Chr1:61844985-61845004 None:intergenic 45.0%
CGTGTGGTAGATGATTGATG+AGG - Chr1:61845488-61845507 MsG0180003404.01.T01:intron 45.0%
CGTTCTTGCAGCATGTTACA+AGG - Chr1:61845996-61846015 MsG0180003404.01.T01:intron 45.0%
CTCAAGCTGCATTGCTTGTT+AGG - Chr1:61846340-61846359 MsG0180003404.01.T01:intron 45.0%
CTTGCTGCTGATGAATCTAC+TGG - Chr1:61844857-61844876 MsG0180003404.01.T01:intron 45.0%
GAAAACTATAGCAGGAACCG+CGG + Chr1:61846160-61846179 None:intergenic 45.0%
GAAGAAAGCTGGAGTTCTTC+CGG - Chr1:61845666-61845685 MsG0180003404.01.T01:intron 45.0%
GACAAGGGAGATGGTTCATT+TGG + Chr1:61845841-61845860 None:intergenic 45.0%
GCAATCTCTGGTGATACTTG+AGG - Chr1:61844441-61844460 MsG0180003404.01.T01:CDS 45.0%
GGTAATGCTAACCTTGGTGA+TGG - Chr1:61846401-61846420 MsG0180003404.01.T01:intron 45.0%
GTGGATGTGTTGAAGAAAGC+TGG - Chr1:61845655-61845674 MsG0180003404.01.T01:intron 45.0%
GTGTATTGGGCTATAACCTC+AGG + Chr1:61846108-61846127 None:intergenic 45.0%
TAGATGATTGATGAGGTCCG+AGG - Chr1:61845495-61845514 MsG0180003404.01.T01:intron 45.0%
TCAATCCACGAAAACGCCTA+CGG - Chr1:61845859-61845878 MsG0180003404.01.T01:intron 45.0%
TCCAGGGTAGCATACCAAAA+CGG - Chr1:61845303-61845322 MsG0180003404.01.T01:CDS 45.0%
TGAGGCAGTCTAAACAACCA+GGG + Chr1:61844967-61844986 None:intergenic 45.0%
TGTGGTTTCTCCATTTGTGC+CGG + Chr1:61845725-61845744 None:intergenic 45.0%
! ACTTTAGGAGAGTCTGATCC+TGG + Chr1:61846081-61846100 None:intergenic 45.0%
! ATTTGTGCCGGCAAGTTCAA+CGG + Chr1:61845713-61845732 None:intergenic 45.0%
! GTCATCCAAACCTTGAGTTG+TGG + Chr1:61845743-61845762 None:intergenic 45.0%
! TTCCAACTAAGTTGACGCCT+CGG + Chr1:61845515-61845534 None:intergenic 45.0%
!! GCGATTTGCTAGCATCAATG+TGG - Chr1:61844892-61844911 MsG0180003404.01.T01:intron 45.0%
!! GCGTTTTCGTGGATTGACAA+GGG + Chr1:61845856-61845875 None:intergenic 45.0%
!! GTGTATAGGAGTACCCTTTG+TGG - Chr1:61845636-61845655 MsG0180003404.01.T01:intron 45.0%
!! TATATTGGCTCTCCCGGAAA+GGG - Chr1:61844830-61844849 MsG0180003404.01.T01:intron 45.0%
!! TCAAGCTGAACTGGCTTGAT+TGG - Chr1:61846601-61846620 MsG0180003404.01.T01:intron 45.0%
!! TTATATTGGCTCTCCCGGAA+AGG - Chr1:61844829-61844848 MsG0180003404.01.T01:intron 45.0%
AAGGGAACCGTTGAACTTGC+CGG - Chr1:61845703-61845722 MsG0180003404.01.T01:intron 50.0%
ACTTCTTGCACCTCTGACCA+AGG + Chr1:61845765-61845784 None:intergenic 50.0%
AGCAGCAAGGATACCCTTTC+CGG + Chr1:61844846-61844865 None:intergenic 50.0%
AGTACTATGAAGCCGGTGCA+AGG - Chr1:61845782-61845801 MsG0180003404.01.T01:intron 50.0%
AGTACTCTTAAGGCATGGGG+TGG - Chr1:61846294-61846313 MsG0180003404.01.T01:intron 50.0%
CCATTTAGCGAACCTTGCAC+CGG + Chr1:61845797-61845816 None:intergenic 50.0%
CCCTTGTCAACCTTGATACC+CGG + Chr1:61845688-61845707 None:intergenic 50.0%
CCGGGTATCAAGGTTGACAA+GGG - Chr1:61845685-61845704 MsG0180003404.01.T01:intron 50.0%
CTCTCCTAAAGTTGCTCCTG+AGG - Chr1:61846089-61846108 MsG0180003404.01.T01:intron 50.0%
CTGAGGCAGTCTAAACAACC+AGG + Chr1:61844968-61844987 None:intergenic 50.0%
GAACGGTTCGCAACAAAGCT+CGG + Chr1:61846134-61846153 None:intergenic 50.0%
GAGGCAGTCTAAACAACCAG+GGG + Chr1:61844966-61844985 None:intergenic 50.0%
GATCCATCCACCAGAATCTC+AGG + Chr1:61845940-61845959 None:intergenic 50.0%
GATGCAAATGCATCACGGGA+AGG + Chr1:61845545-61845564 None:intergenic 50.0%
GCCGTCATATGCCAAGAGAA+TGG - Chr1:61845895-61845914 MsG0180003404.01.T01:intron 50.0%
GGCATAACGAGCTAAACCGT+AGG + Chr1:61845878-61845897 None:intergenic 50.0%
GGTTGTTTAGACTGCCTCAG+TGG - Chr1:61844968-61844987 MsG0180003404.01.T01:intron 50.0%
GTTGAACTTGCCGGCACAAA+TGG - Chr1:61845712-61845731 MsG0180003404.01.T01:intron 50.0%
GTTTGGATGACCTTGGTCAG+AGG - Chr1:61845752-61845771 MsG0180003404.01.T01:intron 50.0%
TCCGGGTATCAAGGTTGACA+AGG - Chr1:61845684-61845703 MsG0180003404.01.T01:intron 50.0%
TGGAGTTCTTCCGGGTATCA+AGG - Chr1:61845675-61845694 MsG0180003404.01.T01:intron 50.0%
TGTAGAGCCTGAGATTCTGG+TGG - Chr1:61845930-61845949 MsG0180003404.01.T01:intron 50.0%
! CTAAACCGTAGGCGTTTTCG+TGG + Chr1:61845867-61845886 None:intergenic 50.0%
! GTCTGGTGGACAAAGTGAAG+AGG - Chr1:61846182-61846201 MsG0180003404.01.T01:intron 50.0%
! TCGTGGATTGACAAGGGAGA+TGG + Chr1:61845850-61845869 None:intergenic 50.0%
! TTCGCGAAGAGTACGTCTGT+TGG + Chr1:61844930-61844949 None:intergenic 50.0%
!! ACCGTTTTGGTATGCTACCC+TGG + Chr1:61845307-61845326 None:intergenic 50.0%
!! ACTCTGAAGCACCATCACCA+AGG + Chr1:61846415-61846434 None:intergenic 50.0%
!! GCTGCTTATATTGGCTCTCC+CGG - Chr1:61844824-61844843 MsG0180003404.01.T01:intron 50.0%
!! GGCGTTTTCGTGGATTGACA+AGG + Chr1:61845857-61845876 None:intergenic 50.0%
CCGGTGCAAGGTTCGCTAAA+TGG - Chr1:61845794-61845813 MsG0180003404.01.T01:intron 55.0%
GAACTCTTGTTCACTGCCCC+TGG - Chr1:61844947-61844966 MsG0180003404.01.T01:intron 55.0%
GAGCCTGAGATTCTGGTGGA+TGG - Chr1:61845934-61845953 MsG0180003404.01.T01:intron 55.0%
GCAGCAAGGATACCCTTTCC+GGG + Chr1:61844845-61844864 None:intergenic 55.0%
TGGCGTGCCGTGCTAAAGAT+CGG - Chr1:61845814-61845833 MsG0180003404.01.T01:intron 55.0%
! GTCCGAGGCGTCAACTTAGT+TGG - Chr1:61845510-61845529 MsG0180003404.01.T01:intron 55.0%
ACTATAGCAGGAACCGCGGC+AGG + Chr1:61846156-61846175 None:intergenic 60.0%
AGCAGGAACCGCGGCAGGAA+CGG + Chr1:61846151-61846170 None:intergenic 65.0%
GTTGCGAACCGTTCCTGCCG+CGG - Chr1:61846140-61846159 MsG0180003404.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 61843471 61846804 61843471 ID=MsG0180003404.01;Name=MsG0180003404.01
Chr1 mRNA 61843471 61846804 61843471 ID=MsG0180003404.01.T01;Parent=MsG0180003404.01;Name=MsG0180003404.01.T01;_AED=0.30;_eAED=0.30;_QI=58|1|1|1|0.5|0.66|3|415|333
Chr1 exon 61843471 61844631 61843471 ID=MsG0180003404.01.T01:exon:4392;Parent=MsG0180003404.01.T01
Chr1 exon 61845241 61845468 61845241 ID=MsG0180003404.01.T01:exon:4391;Parent=MsG0180003404.01.T01
Chr1 exon 61846719 61846804 61846719 ID=MsG0180003404.01.T01:exon:4390;Parent=MsG0180003404.01.T01
Chr1 five_prime_UTR 61846747 61846804 61846747 ID=MsG0180003404.01.T01:five_prime_utr;Parent=MsG0180003404.01.T01
Chr1 CDS 61846719 61846746 61846719 ID=MsG0180003404.01.T01:cds;Parent=MsG0180003404.01.T01
Chr1 CDS 61845241 61845468 61845241 ID=MsG0180003404.01.T01:cds;Parent=MsG0180003404.01.T01
Chr1 CDS 61843886 61844631 61843886 ID=MsG0180003404.01.T01:cds;Parent=MsG0180003404.01.T01
Chr1 three_prime_UTR 61843471 61843885 61843471 ID=MsG0180003404.01.T01:three_prime_utr;Parent=MsG0180003404.01.T01
Gene Sequence

>MsG0180003404.01.T01

ATGTCTTCTTTCAAGAGCAAATATGAAGATGAACTCATTGCCAATGCTGCTTATATTGGCTCTCCCGGAAAGGGTATCCTTGCTGCTGATGAATCTACTGGCACAATTGGAAAGCGATTTGCTAGCATCAATGTGGAGAATGTCGAAGCCAACAGACGTACTCTTCGCGAACTCTTGTTCACTGCCCCTGGTTGTTTAGACTGCCTCAGTGGTGTTATCTTGTTCGAAGAAACACTATATCAAAAAACCGCTGCAGGAGTACCCTTTGTGGATGTGTTGAAGAAAGCTGGAGTTCTTCCGGGTATCAAGGTTGACAAGGGAACCGTTGAACTTGCCGGCACAAATGGAGAAACCACAACTCAAGGTTTGGATGACCTTGGTCAGAGGTGCAAGAAGTACTATGAAGCCGGTGCAAGGTTCGCTAAATGGCGTGCCGTGCTAAAGATCGGTCCAAATGAACCATCTCCCTTGTCAATCCACGAAAACGCCTACGGTTTAGCTCGTTATGCCGTCATATGCCAAGAGAATGGTTTGGTTCCAATTGTAGAGCCTGAGATTCTGGTGGATGGATCTCATGACATCGCAAAATGCGCTGATGTAACTGAACGCGTTCTTGCAGCATGTTACAAGGCTCTAAGTGACCATCATGTTCTTCTTGAAGGTACTCTTTTGAAGCCTAATATGGTTACACCAGGATCAGACTCTCCTAAAGTTGCTCCTGAGGTTATAGCCCAATACACAGTCCGAGCTTTGTTGCGAACCGTTCCTGCCGCGGTTCCTGCTATAGTTTTCTTGTCTGGTGGACAAAGTGAAGAGGAAGCAACTATTAATCTTAATGCAATGAACAAACTTAAGGGAAAGAAGCCTTGGACTCTTACATTCTCTTATGGAAGGGCACTTCAGCAAAGTACTCTTAAGGCATGGGGTGGAAAAGATGAAAACATTCCTAAAGCTCAAGCTGCATTGCTTGTTAGGTGTAAAGCAATTCAGAAGCAACTCTAG
Protein sequence

>MsG0180003404.01.T01

MSSFKSKYEDELIANAAYIGSPGKGILAADESTGTIGKRFASINVENVEANRRTLRELLFTAPGCLDCLSGVILFEETLYQKTAAGVPFVDVLKKAGVLPGIKVDKGTVELAGTNGETTTQGLDDLGQRCKKYYEAGARFAKWRAVLKIGPNEPSPLSIHENAYGLARYAVICQENGLVPIVEPEILVDGSHDIAKCADVTERVLAACYKALSDHHVLLEGTLLKPNMVTPGSDSPKVAPEVIAQYTVRALLRTVPAAVPAIVFLSGGQSEEEATINLNAMNKLKGKKPWTLTFSYGRALQQSTLKAWGGKDENIPKAQAALLVRCKAIQKQL*