Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020595.01.T01 | XP_003606257.1 | 97.312 | 372 | 10 | 0 | 1 | 372 | 1 | 372 | 0 | 753 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020595.01.T01 | D3U717 | 73.165 | 395 | 74 | 6 | 1 | 370 | 1 | 388 | 0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020595.01.T01 | G7JKZ4 | 97.312 | 372 | 10 | 0 | 1 | 372 | 1 | 372 | 0.0 | 753 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048506.01 | MsG0480020595.01 | 0.827007 | 1.983859e-54 | 1.891180e-51 |
| MsG0080048507.01 | MsG0480020595.01 | 0.800232 | 1.586958e-48 | 7.350790e-46 |
| MsG0180001029.01 | MsG0480020595.01 | 0.800659 | 1.299137e-48 | 6.083274e-46 |
| MsG0180003404.01 | MsG0480020595.01 | 0.853622 | 2.115596e-61 | 4.599367e-58 |
| MsG0180004734.01 | MsG0480020595.01 | 0.827155 | 1.829164e-54 | 1.751307e-51 |
| MsG0180004880.01 | MsG0480020595.01 | 0.844428 | 7.607133e-59 | 1.227712e-55 |
| MsG0180005130.01 | MsG0480020595.01 | 0.818603 | 1.798426e-52 | 1.352268e-49 |
| MsG0180005143.01 | MsG0480020595.01 | 0.814534 | 1.467377e-51 | 9.871686e-49 |
| MsG0180005906.01 | MsG0480020595.01 | 0.814297 | 1.655371e-51 | 1.106530e-48 |
| MsG0180006195.01 | MsG0480020595.01 | 0.812617 | 3.873531e-51 | 2.474558e-48 |
| MsG0280011110.01 | MsG0480020595.01 | 0.803850 | 2.863599e-49 | 1.454377e-46 |
| MsG0280011292.01 | MsG0480020595.01 | 0.812306 | 4.529856e-51 | 2.870010e-48 |
| MsG0480018693.01 | MsG0480020595.01 | 0.803671 | 3.118316e-49 | 1.576397e-46 |
| MsG0480018697.01 | MsG0480020595.01 | 0.810889 | 9.208753e-51 | 5.618480e-48 |
| MsG0480019348.01 | MsG0480020595.01 | 0.803462 | 3.446647e-49 | 1.733100e-46 |
| MsG0480020473.01 | MsG0480020595.01 | -0.813423 | 2.579353e-51 | 1.683742e-48 |
| MsG0480020595.01 | MsG0480022308.01 | 0.801267 | 9.761842e-49 | 4.641836e-46 |
| MsG0480020595.01 | MsG0580026521.01 | 0.808715 | 2.702273e-50 | 1.556223e-47 |
| MsG0480020595.01 | MsG0580029235.01 | 0.857793 | 1.280808e-62 | 3.198621e-59 |
| MsG0480020595.01 | MsG0580029291.01 | 0.808884 | 2.486996e-50 | 1.438663e-47 |
| MsG0480020595.01 | MsG0680031852.01 | 0.835438 | 1.677903e-56 | 2.051812e-53 |
| MsG0480020595.01 | MsG0680032932.01 | 0.822403 | 2.413516e-53 | 2.018247e-50 |
| MsG0480020595.01 | MsG0680034238.01 | 0.810584 | 1.071974e-50 | 6.486893e-48 |
| MsG0480020595.01 | MsG0780036839.01 | 0.814843 | 1.253163e-51 | 8.500894e-49 |
| MsG0480020595.01 | MsG0780038318.01 | 0.802070 | 6.680485e-49 | 3.241888e-46 |
| MsG0480020595.01 | MsG0780040634.01 | -0.802302 | 5.984482e-49 | 2.921485e-46 |
| MsG0480020595.01 | MsG0880045801.01 | 0.810119 | 1.350236e-50 | 8.071493e-48 |
| MsG0480020595.01 | MsG0880046334.01 | 0.816947 | 4.252726e-52 | 3.055884e-49 |
| MsG0480020595.01 | MsG0880046399.01 | 0.809833 | 1.556006e-50 | 9.232080e-48 |
| MsG0480020595.01 | MsG0880046946.01 | 0.807525 | 4.843595e-50 | 2.703973e-47 |
| MsG0380016299.01 | MsG0480020595.01 | 0.819164 | 1.341083e-52 | 1.024123e-49 |
| MsG0280007677.01 | MsG0480020595.01 | 0.821448 | 4.016506e-53 | 3.268500e-50 |
| MsG0280007910.01 | MsG0480020595.01 | 0.817706 | 2.869286e-52 | 2.104964e-49 |
| MsG0280010270.01 | MsG0480020595.01 | 0.805411 | 1.352080e-49 | 7.148371e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020595.01.T01 | MTR_4g055310 | 97.312 | 372 | 10 | 0 | 1 | 372 | 1 | 372 | 0.0 | 753 |
| MsG0480020595.01.T01 | MTR_2g084875 | 79.328 | 387 | 63 | 5 | 1 | 372 | 1 | 385 | 0.0 | 598 |
| MsG0480020595.01.T01 | MTR_4g132250 | 57.447 | 329 | 136 | 2 | 44 | 372 | 32 | 356 | 3.71e-127 | 372 |
| MsG0480020595.01.T01 | MTR_2g088130 | 62.593 | 270 | 99 | 1 | 103 | 372 | 71 | 338 | 4.53e-124 | 363 |
| MsG0480020595.01.T01 | MTR_2g088130 | 63.359 | 262 | 94 | 1 | 103 | 364 | 71 | 330 | 1.17e-120 | 353 |
| MsG0480020595.01.T01 | MTR_4g061070 | 64.444 | 270 | 91 | 2 | 103 | 372 | 73 | 337 | 2.79e-118 | 348 |
| MsG0480020595.01.T01 | MTR_2g088130 | 65.000 | 240 | 82 | 1 | 133 | 372 | 51 | 288 | 5.36e-111 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020595.01.T01 | AT1G08250 | 80.702 | 342 | 47 | 5 | 46 | 370 | 26 | 365 | 0.0 | 529 |
| MsG0480020595.01.T01 | AT2G27820 | 82.569 | 327 | 48 | 3 | 55 | 372 | 46 | 372 | 0.0 | 522 |
| MsG0480020595.01.T01 | AT3G44720 | 72.238 | 353 | 87 | 6 | 29 | 372 | 28 | 378 | 2.35e-171 | 485 |
| MsG0480020595.01.T01 | AT5G22630 | 74.716 | 352 | 73 | 5 | 31 | 372 | 34 | 379 | 2.31e-170 | 483 |
| MsG0480020595.01.T01 | AT1G11790 | 61.905 | 273 | 102 | 1 | 100 | 372 | 85 | 355 | 2.00e-122 | 360 |
| MsG0480020595.01.T01 | AT3G07630 | 63.448 | 290 | 99 | 2 | 81 | 370 | 59 | 341 | 6.19e-119 | 350 |
| MsG0480020595.01.T01 | AT3G07630 | 63.448 | 290 | 99 | 2 | 81 | 370 | 59 | 341 | 6.19e-119 | 350 |
| MsG0480020595.01.T01 | AT3G07630 | 63.448 | 290 | 99 | 2 | 81 | 370 | 59 | 341 | 6.19e-119 | 350 |
| MsG0480020595.01.T01 | AT1G11790 | 61.382 | 246 | 93 | 1 | 100 | 345 | 85 | 328 | 9.40e-108 | 320 |
Find 117 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAACCGTGTCACGTTATT+TGG | 0.106188 | 4:-44304646 | None:intergenic |
| ACGATCGGTTCTTGGAATTA+TGG | 0.194377 | 4:-44304686 | None:intergenic |
| CACTGCCTCCTCGCACTTCC+CGG | 0.291144 | 4:+44304391 | MsG0480020595.01.T01:CDS |
| TCCGCATTTAACGCTTATTC+TGG | 0.298276 | 4:-44303873 | None:intergenic |
| CGATCGGTTCTTGGAATTAT+GGG | 0.310255 | 4:-44304685 | None:intergenic |
| AGGCTTCCATGGCTGAGGTT+AGG | 0.315985 | 4:+44304907 | MsG0480020595.01.T01:CDS |
| GCACGCGCTGCAGAGCTTTA+CGG | 0.323478 | 4:+44304589 | MsG0480020595.01.T01:CDS |
| GGCTTCCATGGCTGAGGTTA+GGG | 0.363263 | 4:+44304908 | MsG0480020595.01.T01:CDS |
| AGCTTTACCGGCAGCGGCTT+CGG | 0.370119 | 4:-44304182 | None:intergenic |
| GGTGGTGACATGGTCGTTTC+CGG | 0.373076 | 4:-44303999 | None:intergenic |
| TTGAAAGGACGATCGGTTCT+TGG | 0.387085 | 4:-44304694 | None:intergenic |
| GATCGGTTACGGCGGCGTTA+TGG | 0.389638 | 4:-44304030 | None:intergenic |
| GCGAGGAGGCAGTGGTGGAC+GGG | 0.401531 | 4:-44304382 | None:intergenic |
| CGTGACACGGTTTGTTATGT+TGG | 0.402654 | 4:+44304654 | MsG0480020595.01.T01:CDS |
| CACGGCATGGCTTCGCTGTT+CGG | 0.402841 | 4:-44304208 | None:intergenic |
| ATTCCCTTACCTATCTGAAC+CGG | 0.403460 | 4:+44303813 | MsG0480020595.01.T01:CDS |
| GTGATTTATTGTTTCCGATT+GGG | 0.409384 | 4:-44304063 | None:intergenic |
| CATTTAACGCTTATTCTGGT+TGG | 0.416317 | 4:-44303869 | None:intergenic |
| GCTGTTCGGATAAGCTTTAC+CGG | 0.419640 | 4:-44304194 | None:intergenic |
| GTCGCATACCAAGGAGTTCC+CGG | 0.419874 | 4:+44304151 | MsG0480020595.01.T01:CDS |
| CCAATCGGCTCGGTTTGAAC+CGG | 0.421888 | 4:-44303915 | None:intergenic |
| AAGCTCTGCAGCGCGTGCAC+TGG | 0.428583 | 4:-44304584 | None:intergenic |
| GAAGGAGGAGGTCGTAGTTT+CGG | 0.440722 | 4:-44304324 | None:intergenic |
| GTTCAGATAGGTAAGGGAAT+TGG | 0.447287 | 4:-44303810 | None:intergenic |
| GGGTTCGCCCCTCGTTAAAC+CGG | 0.447861 | 4:+44303834 | MsG0480020595.01.T01:CDS |
| AGCGCATGAGCTTTGCCAAT+CGG | 0.449914 | 4:-44303930 | None:intergenic |
| CGTGCATCGGTGCCGGAGAT+AGG | 0.451609 | 4:-44304114 | None:intergenic |
| GGCGGCGTTATGGCCGTTGA+CGG | 0.463263 | 4:-44304020 | None:intergenic |
| AGTGATTTATTGTTTCCGAT+TGG | 0.474485 | 4:-44304064 | None:intergenic |
| ATGAGCTTTGCCAATCGGCT+CGG | 0.474923 | 4:-44303925 | None:intergenic |
| AGCTGATCGCGCAGTTCTAC+CGG | 0.480649 | 4:+44304273 | MsG0480020595.01.T01:CDS |
| GCTTAACTAAGATTGAATCT+AGG | 0.481937 | 4:+44304797 | MsG0480020595.01.T01:CDS |
| CGAGGAGGCAGTGGTGGACG+GGG | 0.482376 | 4:-44304381 | None:intergenic |
| GATCTTCAGCTCGTCCCAAT+CGG | 0.482742 | 4:+44304049 | MsG0480020595.01.T01:CDS |
| TCATCATCCACAACTCGAAT+CGG | 0.483438 | 4:-44304835 | None:intergenic |
| TGCGAGGAGGCAGTGGTGGA+CGG | 0.483500 | 4:-44304383 | None:intergenic |
| TCGGTGATAGTAAGTGGCTT+TGG | 0.489232 | 4:-44304091 | None:intergenic |
| CGGGAAGTGCGAGGAGGCAG+TGG | 0.489502 | 4:-44304390 | None:intergenic |
| TGGTTGGAGCTGAACCGATC+CGG | 0.493435 | 4:-44303853 | None:intergenic |
| GTGGAGCCGTGCATCGGTGC+CGG | 0.495353 | 4:-44304121 | None:intergenic |
| CGGATAAGCTTTACCGGCAG+CGG | 0.495619 | 4:-44304188 | None:intergenic |
| CGATGTGGAGGCGGTGGCGA+AGG | 0.497613 | 4:-44304342 | None:intergenic |
| GGAGGCGGTGGCGAAGGAGG+AGG | 0.501810 | 4:-44304336 | None:intergenic |
| GGGGCGAACCCGGTTCAGAT+AGG | 0.502714 | 4:-44303822 | None:intergenic |
| TGCAGCGCGTGCACTGGCGA+TGG | 0.502961 | 4:-44304578 | None:intergenic |
| GGATTAAATATCTTAGCTGA+TGG | 0.510750 | 4:+44304610 | MsG0480020595.01.T01:CDS |
| ACATGGTCGTTTCCGGTGAC+CGG | 0.513789 | 4:-44303992 | None:intergenic |
| TGTGGAGGCGGTGGCGAAGG+AGG | 0.517898 | 4:-44304339 | None:intergenic |
| TACTATCACCGACCTATCTC+CGG | 0.522266 | 4:+44304102 | MsG0480020595.01.T01:CDS |
| CGCCCCTCGTTAAACCGGAT+CGG | 0.523600 | 4:+44303839 | MsG0480020595.01.T01:CDS |
| ATCGGCTCGGTTTGAACCGG+TGG | 0.524999 | 4:-44303912 | None:intergenic |
| AGCGGCTTCGGAGTATGCAC+CGG | 0.526783 | 4:-44304170 | None:intergenic |
| TGGCCGTCCGATTCGAGTTG+TGG | 0.527016 | 4:+44304828 | MsG0480020595.01.T01:CDS |
| ATAAGCGTTAAATGCGGATA+CGG | 0.530595 | 4:+44303878 | MsG0480020595.01.T01:CDS |
| CTCCGACGATGTGGAGGCGG+TGG | 0.532325 | 4:-44304348 | None:intergenic |
| CTTCTCCGACGATGTGGAGG+CGG | 0.532954 | 4:-44304351 | None:intergenic |
| GACCATGTCACCACCGTCAA+CGG | 0.533606 | 4:+44304007 | MsG0480020595.01.T01:CDS |
| GATTGGGACGAGCTGAAGAT+CGG | 0.534875 | 4:-44304047 | None:intergenic |
| CGGCCTCAACGTAGCGCGTG+AGG | 0.535998 | 4:+44304492 | MsG0480020595.01.T01:CDS |
| GCATACTCCGAAGCCGCTGC+CGG | 0.537170 | 4:+44304175 | MsG0480020595.01.T01:CDS |
| TCGCATTGAGCTAATGCTTG+TGG | 0.545583 | 4:-44304451 | None:intergenic |
| GACGAGCTGAAGATCGGTTA+CGG | 0.546171 | 4:-44304041 | None:intergenic |
| CCGGTTCAAACCGAGCCGAT+TGG | 0.554522 | 4:+44303915 | MsG0480020595.01.T01:CDS |
| CGAGATGAATCTCCGGTCAC+CGG | 0.555384 | 4:+44303980 | MsG0480020595.01.T01:CDS |
| CGGAGGGTGGAGCCGTGCAT+CGG | 0.562815 | 4:-44304127 | None:intergenic |
| TGGCGATGGCAGCAGTGTCA+CGG | 0.562951 | 4:-44304564 | None:intergenic |
| TTCCCTTACCTATCTGAACC+GGG | 0.566128 | 4:+44303814 | MsG0480020595.01.T01:CDS |
| TTCACAGCGAGATGAATCTC+CGG | 0.567455 | 4:+44303973 | MsG0480020595.01.T01:CDS |
| AGTATGCACCGGGAACTCCT+TGG | 0.568238 | 4:-44304159 | None:intergenic |
| GATAGGTCGGTGATAGTAAG+TGG | 0.571076 | 4:-44304097 | None:intergenic |
| TTGGTATGCGACACGGAGGG+TGG | 0.572771 | 4:-44304140 | None:intergenic |
| CGCCACCGCCTCCACATCGT+CGG | 0.573031 | 4:+44304346 | MsG0480020595.01.T01:CDS |
| GAAGTGCGAGGAGGCAGTGG+TGG | 0.577307 | 4:-44304387 | None:intergenic |
| GGTTTAACGAGGGGCGAACC+CGG | 0.579775 | 4:-44303832 | None:intergenic |
| GGCACAAAATGCACTTGCTG+AGG | 0.582924 | 4:+44304929 | MsG0480020595.01.T01:CDS |
| GGCCGTTGACGGTGGTGACA+TGG | 0.583052 | 4:-44304009 | None:intergenic |
| TTGTGCCCTAACCTCAGCCA+TGG | 0.583878 | 4:-44304913 | None:intergenic |
| CTACCGGTTGAAAACTCCCT+CGG | 0.584065 | 4:+44304289 | MsG0480020595.01.T01:CDS |
| TTCGGACTCCGGGAAGTGCG+AGG | 0.585218 | 4:-44304399 | None:intergenic |
| GCGGCTTCGGAGTATGCACC+GGG | 0.586817 | 4:-44304169 | None:intergenic |
| GAACCCGGTTCAGATAGGTA+AGG | 0.591113 | 4:-44303817 | None:intergenic |
| CTATCTCCGGCACCGATGCA+CGG | 0.591172 | 4:+44304115 | MsG0480020595.01.T01:CDS |
| GGCGTTATGGCCGTTGACGG+TGG | 0.595595 | 4:-44304017 | None:intergenic |
| CATGCCGTGTGATCAATTCG+AGG | 0.597736 | 4:+44304222 | MsG0480020595.01.T01:CDS |
| AACCCGGTTCAGATAGGTAA+GGG | 0.606680 | 4:-44303816 | None:intergenic |
| GAACTTCTCCGACGATGTGG+AGG | 0.607022 | 4:-44304354 | None:intergenic |
| CGGCCTCACGCGCTACGTTG+AGG | 0.609595 | 4:-44304495 | None:intergenic |
| GGAGGAGGTCGTAGTTTCGG+TGG | 0.612462 | 4:-44304321 | None:intergenic |
| GTTGTGGATGATGAAAATGA+TGG | 0.612547 | 4:+44304844 | MsG0480020595.01.T01:CDS |
| CTCGAATTGATCACACGGCA+TGG | 0.616382 | 4:-44304221 | None:intergenic |
| GTTGAACTTCTCCGACGATG+TGG | 0.621502 | 4:-44304357 | None:intergenic |
| CATCGGTGCCGGAGATAGGT+CGG | 0.624382 | 4:-44304110 | None:intergenic |
| GAACCGATCCGGTTTAACGA+GGG | 0.630908 | 4:-44303842 | None:intergenic |
| GAGGCCGTTGACGATACAGC+AGG | 0.632801 | 4:+44304511 | MsG0480020595.01.T01:CDS |
| GGCACCTGCTGTATCGTCAA+CGG | 0.635572 | 4:-44304515 | None:intergenic |
| ACCCTCCGTGTCGCATACCA+AGG | 0.636772 | 4:+44304142 | MsG0480020595.01.T01:CDS |
| GAAAACACGCTAACAAAGCT+CGG | 0.640593 | 4:+44304472 | MsG0480020595.01.T01:CDS |
| AACCGATCCGGTTTAACGAG+GGG | 0.645716 | 4:-44303841 | None:intergenic |
| TGACGATACAGCAGGTGCCG+CGG | 0.648138 | 4:+44304519 | MsG0480020595.01.T01:CDS |
| TGAACCGATCCGGTTTAACG+AGG | 0.652677 | 4:-44303843 | None:intergenic |
| GAACTCCTTGGTATGCGACA+CGG | 0.654132 | 4:-44304147 | None:intergenic |
| CGAATCGGACGGCCACGATG+AGG | 0.656619 | 4:-44304820 | None:intergenic |
| TAGGTAAGGGAATTGGAAGA+CGG | 0.657172 | 4:-44303803 | None:intergenic |
| TTCGGTGGATAGATCCTCCG+AGG | 0.664481 | 4:-44304306 | None:intergenic |
| CATCCACAACTCGAATCGGA+CGG | 0.675677 | 4:-44304831 | None:intergenic |
| ATGATCCAAATAACGTGACA+CGG | 0.678576 | 4:+44304641 | MsG0480020595.01.T01:CDS |
| GGACTCCGGGAAGTGCGAGG+AGG | 0.682903 | 4:-44304396 | None:intergenic |
| ACCAGAATAAGCGTTAAATG+CGG | 0.694484 | 4:+44303872 | MsG0480020595.01.T01:CDS |
| CTCCTTGGTATGCGACACGG+AGG | 0.695713 | 4:-44304144 | None:intergenic |
| TCGGTGGATAGATCCTCCGA+GGG | 0.696217 | 4:-44304305 | None:intergenic |
| TCCTTGGTATGCGACACGGA+GGG | 0.699394 | 4:-44304143 | None:intergenic |
| CCGGTTGAAAACTCCCTCGG+AGG | 0.702573 | 4:+44304292 | MsG0480020595.01.T01:CDS |
| GCTACCTCGAATTGATCACA+CGG | 0.710462 | 4:-44304226 | None:intergenic |
| CGATGGCAGCAGTGTCACGG+AGG | 0.716743 | 4:-44304561 | None:intergenic |
| GAGCTGAAGATCGGTTACGG+CGG | 0.717318 | 4:-44304038 | None:intergenic |
| ATTTGCAGCAATAAACTCCG+CGG | 0.720755 | 4:-44304536 | None:intergenic |
| ATTGAATCTAGGCCTCATCG+TGG | 0.760383 | 4:+44304808 | MsG0480020595.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGTTTATATTGATTTTG+AGG | + | Chr4:44304887-44304906 | MsG0480020595.01.T01:CDS | 15.0% |
| !!! | AAAACAATGCTTGTTTTGAA+AGG | - | Chr4:44304712-44304731 | None:intergenic | 25.0% |
| !!! | ATTGTTTTTGCTCATGATAA+AGG | + | Chr4:44304724-44304743 | MsG0480020595.01.T01:CDS | 25.0% |
| AGTGATTTATTGTTTCCGAT+TGG | - | Chr4:44304067-44304086 | None:intergenic | 30.0% | |
| GCTTAACTAAGATTGAATCT+AGG | + | Chr4:44304797-44304816 | MsG0480020595.01.T01:CDS | 30.0% | |
| GGATTAAATATCTTAGCTGA+TGG | + | Chr4:44304610-44304629 | MsG0480020595.01.T01:CDS | 30.0% | |
| GTGATTTATTGTTTCCGATT+GGG | - | Chr4:44304066-44304085 | None:intergenic | 30.0% | |
| ACCAGAATAAGCGTTAAATG+CGG | + | Chr4:44303872-44303891 | MsG0480020595.01.T01:CDS | 35.0% | |
| ATAAGCGTTAAATGCGGATA+CGG | + | Chr4:44303878-44303897 | MsG0480020595.01.T01:CDS | 35.0% | |
| ATGATCCAAATAACGTGACA+CGG | + | Chr4:44304641-44304660 | MsG0480020595.01.T01:CDS | 35.0% | |
| CATTTAACGCTTATTCTGGT+TGG | - | Chr4:44303872-44303891 | None:intergenic | 35.0% | |
| GTTGTGGATGATGAAAATGA+TGG | + | Chr4:44304844-44304863 | MsG0480020595.01.T01:CDS | 35.0% | |
| ! | ATTCGAGGTAGCTTTTCAAT+CGG | + | Chr4:44304237-44304256 | MsG0480020595.01.T01:CDS | 35.0% |
| ! | CACGTGTGAGATATTCTTTT+CGG | - | Chr4:44304420-44304439 | None:intergenic | 35.0% |
| !! | TGCTTTCAGCTTTTGCTTTT+AGG | + | Chr4:44304767-44304786 | MsG0480020595.01.T01:CDS | 35.0% |
| !!! | TATTGATTTTGAGGCTTCCA+TGG | + | Chr4:44304896-44304915 | MsG0480020595.01.T01:CDS | 35.0% |
| ACAAACCGTGTCACGTTATT+TGG | - | Chr4:44304649-44304668 | None:intergenic | 40.0% | |
| ATTCCCTTACCTATCTGAAC+CGG | + | Chr4:44303813-44303832 | MsG0480020595.01.T01:CDS | 40.0% | |
| ATTTGCAGCAATAAACTCCG+CGG | - | Chr4:44304539-44304558 | None:intergenic | 40.0% | |
| GAAAACACGCTAACAAAGCT+CGG | + | Chr4:44304472-44304491 | MsG0480020595.01.T01:CDS | 40.0% | |
| GTTCAGATAGGTAAGGGAAT+TGG | - | Chr4:44303813-44303832 | None:intergenic | 40.0% | |
| TAGGTAAGGGAATTGGAAGA+CGG | - | Chr4:44303806-44303825 | None:intergenic | 40.0% | |
| TCATCATCCACAACTCGAAT+CGG | - | Chr4:44304838-44304857 | None:intergenic | 40.0% | |
| TCCGCATTTAACGCTTATTC+TGG | - | Chr4:44303876-44303895 | None:intergenic | 40.0% | |
| ! | ACGATCGGTTCTTGGAATTA+TGG | - | Chr4:44304689-44304708 | None:intergenic | 40.0% |
| ! | AGATATTCTTTTCGGACTCC+GGG | - | Chr4:44304412-44304431 | None:intergenic | 40.0% |
| ! | CGATCGGTTCTTGGAATTAT+GGG | - | Chr4:44304688-44304707 | None:intergenic | 40.0% |
| ! | CTTTTCAATCGGTAGAACTC+TGG | + | Chr4:44304248-44304267 | MsG0480020595.01.T01:CDS | 40.0% |
| ! | GAGATATTCTTTTCGGACTC+CGG | - | Chr4:44304413-44304432 | None:intergenic | 40.0% |
| !!! | GCTTGTTTTGAAAGGACGAT+CGG | - | Chr4:44304704-44304723 | None:intergenic | 40.0% |
| !!! | TACGGTTTTGAATTCTCCAC+CGG | + | Chr4:44303896-44303915 | MsG0480020595.01.T01:CDS | 40.0% |
| AACCCGGTTCAGATAGGTAA+GGG | - | Chr4:44303819-44303838 | None:intergenic | 45.0% | |
| ATTGAATCTAGGCCTCATCG+TGG | + | Chr4:44304808-44304827 | MsG0480020595.01.T01:CDS | 45.0% | |
| GATAGGTCGGTGATAGTAAG+TGG | - | Chr4:44304100-44304119 | None:intergenic | 45.0% | |
| GCTACCTCGAATTGATCACA+CGG | - | Chr4:44304229-44304248 | None:intergenic | 45.0% | |
| GCTGTTCGGATAAGCTTTAC+CGG | - | Chr4:44304197-44304216 | None:intergenic | 45.0% | |
| TACTATCACCGACCTATCTC+CGG | + | Chr4:44304102-44304121 | MsG0480020595.01.T01:CDS | 45.0% | |
| TCGCATTGAGCTAATGCTTG+TGG | - | Chr4:44304454-44304473 | None:intergenic | 45.0% | |
| TCGGTGATAGTAAGTGGCTT+TGG | - | Chr4:44304094-44304113 | None:intergenic | 45.0% | |
| TTCACAGCGAGATGAATCTC+CGG | + | Chr4:44303973-44303992 | MsG0480020595.01.T01:CDS | 45.0% | |
| TTCCCTTACCTATCTGAACC+GGG | + | Chr4:44303814-44303833 | MsG0480020595.01.T01:CDS | 45.0% | |
| ! | TTGAAAGGACGATCGGTTCT+TGG | - | Chr4:44304697-44304716 | None:intergenic | 45.0% |
| !! | CGTGACACGGTTTGTTATGT+TGG | + | Chr4:44304654-44304673 | MsG0480020595.01.T01:CDS | 45.0% |
| AACCGATCCGGTTTAACGAG+GGG | - | Chr4:44303844-44303863 | None:intergenic | 50.0% | |
| AGCGCATGAGCTTTGCCAAT+CGG | - | Chr4:44303933-44303952 | None:intergenic | 50.0% | |
| ATGAGCTTTGCCAATCGGCT+CGG | - | Chr4:44303928-44303947 | None:intergenic | 50.0% | |
| CATCCACAACTCGAATCGGA+CGG | - | Chr4:44304834-44304853 | None:intergenic | 50.0% | |
| CATGCCGTGTGATCAATTCG+AGG | + | Chr4:44304222-44304241 | MsG0480020595.01.T01:CDS | 50.0% | |
| CTCGAATTGATCACACGGCA+TGG | - | Chr4:44304224-44304243 | None:intergenic | 50.0% | |
| GAACCCGGTTCAGATAGGTA+AGG | - | Chr4:44303820-44303839 | None:intergenic | 50.0% | |
| GAACCGATCCGGTTTAACGA+GGG | - | Chr4:44303845-44303864 | None:intergenic | 50.0% | |
| GAACTCCTTGGTATGCGACA+CGG | - | Chr4:44304150-44304169 | None:intergenic | 50.0% | |
| GAAGGAGGAGGTCGTAGTTT+CGG | - | Chr4:44304327-44304346 | None:intergenic | 50.0% | |
| GACGAGCTGAAGATCGGTTA+CGG | - | Chr4:44304044-44304063 | None:intergenic | 50.0% | |
| GATCTTCAGCTCGTCCCAAT+CGG | + | Chr4:44304049-44304068 | MsG0480020595.01.T01:CDS | 50.0% | |
| GATTGGGACGAGCTGAAGAT+CGG | - | Chr4:44304050-44304069 | None:intergenic | 50.0% | |
| GTTGAACTTCTCCGACGATG+TGG | - | Chr4:44304360-44304379 | None:intergenic | 50.0% | |
| TGAACCGATCCGGTTTAACG+AGG | - | Chr4:44303846-44303865 | None:intergenic | 50.0% | |
| ! | CTACCGGTTGAAAACTCCCT+CGG | + | Chr4:44304289-44304308 | MsG0480020595.01.T01:CDS | 50.0% |
| ! | GGCACAAAATGCACTTGCTG+AGG | + | Chr4:44304929-44304948 | MsG0480020595.01.T01:CDS | 50.0% |
| !!! | TTTTGAGGCTTCCATGGCTG+AGG | + | Chr4:44304902-44304921 | MsG0480020595.01.T01:CDS | 50.0% |
| ACATGGTCGTTTCCGGTGAC+CGG | - | Chr4:44303995-44304014 | None:intergenic | 55.0% | |
| AGCTGATCGCGCAGTTCTAC+CGG | + | Chr4:44304273-44304292 | MsG0480020595.01.T01:CDS | 55.0% | |
| AGGCTTCCATGGCTGAGGTT+AGG | + | Chr4:44304907-44304926 | MsG0480020595.01.T01:CDS | 55.0% | |
| AGTATGCACCGGGAACTCCT+TGG | - | Chr4:44304162-44304181 | None:intergenic | 55.0% | |
| CGAGATGAATCTCCGGTCAC+CGG | + | Chr4:44303980-44303999 | MsG0480020595.01.T01:CDS | 55.0% | |
| CGGATAAGCTTTACCGGCAG+CGG | - | Chr4:44304191-44304210 | None:intergenic | 55.0% | |
| GAACTTCTCCGACGATGTGG+AGG | - | Chr4:44304357-44304376 | None:intergenic | 55.0% | |
| GACCATGTCACCACCGTCAA+CGG | + | Chr4:44304007-44304026 | MsG0480020595.01.T01:CDS | 55.0% | |
| GAGCTGAAGATCGGTTACGG+CGG | - | Chr4:44304041-44304060 | None:intergenic | 55.0% | |
| GGCACCTGCTGTATCGTCAA+CGG | - | Chr4:44304518-44304537 | None:intergenic | 55.0% | |
| GGCTTCCATGGCTGAGGTTA+GGG | + | Chr4:44304908-44304927 | MsG0480020595.01.T01:CDS | 55.0% | |
| GGTGGTGACATGGTCGTTTC+CGG | - | Chr4:44304002-44304021 | None:intergenic | 55.0% | |
| GTCGCATACCAAGGAGTTCC+CGG | + | Chr4:44304151-44304170 | MsG0480020595.01.T01:CDS | 55.0% | |
| TCCTTGGTATGCGACACGGA+GGG | - | Chr4:44304146-44304165 | None:intergenic | 55.0% | |
| TCGGTGGATAGATCCTCCGA+GGG | - | Chr4:44304308-44304327 | None:intergenic | 55.0% | |
| TGGTTGGAGCTGAACCGATC+CGG | - | Chr4:44303856-44303875 | None:intergenic | 55.0% | |
| TTCGGTGGATAGATCCTCCG+AGG | - | Chr4:44304309-44304328 | None:intergenic | 55.0% | |
| TTGTGCCCTAACCTCAGCCA+TGG | - | Chr4:44304916-44304935 | None:intergenic | 55.0% | |
| ! | CCTCCGAGGGAGTTTTCAAC+CGG | - | Chr4:44304295-44304314 | None:intergenic | 55.0% |
| !! | CCAATCGGCTCGGTTTGAAC+CGG | - | Chr4:44303918-44303937 | None:intergenic | 55.0% |
| ACCCTCCGTGTCGCATACCA+AGG | + | Chr4:44304142-44304161 | MsG0480020595.01.T01:CDS | 60.0% | |
| AGCGGCTTCGGAGTATGCAC+CGG | - | Chr4:44304173-44304192 | None:intergenic | 60.0% | |
| AGCTTTACCGGCAGCGGCTT+CGG | - | Chr4:44304185-44304204 | None:intergenic | 60.0% | |
| CACGGCATGGCTTCGCTGTT+CGG | - | Chr4:44304211-44304230 | None:intergenic | 60.0% | |
| CCGGTTCAAACCGAGCCGAT+TGG | + | Chr4:44303915-44303934 | MsG0480020595.01.T01:CDS | 60.0% | |
| CCGGTTGAAAACTCCCTCGG+AGG | + | Chr4:44304292-44304311 | MsG0480020595.01.T01:CDS | 60.0% | |
| CGCCCCTCGTTAAACCGGAT+CGG | + | Chr4:44303839-44303858 | MsG0480020595.01.T01:CDS | 60.0% | |
| CTCCTTGGTATGCGACACGG+AGG | - | Chr4:44304147-44304166 | None:intergenic | 60.0% | |
| CTTCTCCGACGATGTGGAGG+CGG | - | Chr4:44304354-44304373 | None:intergenic | 60.0% | |
| GAGGCCGTTGACGATACAGC+AGG | + | Chr4:44304511-44304530 | MsG0480020595.01.T01:CDS | 60.0% | |
| GATCGGTTACGGCGGCGTTA+TGG | - | Chr4:44304033-44304052 | None:intergenic | 60.0% | |
| GCACGCGCTGCAGAGCTTTA+CGG | + | Chr4:44304589-44304608 | MsG0480020595.01.T01:CDS | 60.0% | |
| GGAGGAGGTCGTAGTTTCGG+TGG | - | Chr4:44304324-44304343 | None:intergenic | 60.0% | |
| GGGTTCGCCCCTCGTTAAAC+CGG | + | Chr4:44303834-44303853 | MsG0480020595.01.T01:CDS | 60.0% | |
| GGTTTAACGAGGGGCGAACC+CGG | - | Chr4:44303835-44303854 | None:intergenic | 60.0% | |
| TGGCGATGGCAGCAGTGTCA+CGG | - | Chr4:44304567-44304586 | None:intergenic | 60.0% | |
| TTGGTATGCGACACGGAGGG+TGG | - | Chr4:44304143-44304162 | None:intergenic | 60.0% | |
| ! | TGACGATACAGCAGGTGCCG+CGG | + | Chr4:44304519-44304538 | MsG0480020595.01.T01:CDS | 60.0% |
| !! | ATCGGCTCGGTTTGAACCGG+TGG | - | Chr4:44303915-44303934 | None:intergenic | 60.0% |
| !! | CATCGGTGCCGGAGATAGGT+CGG | - | Chr4:44304113-44304132 | None:intergenic | 60.0% |
| !! | CTATCTCCGGCACCGATGCA+CGG | + | Chr4:44304115-44304134 | MsG0480020595.01.T01:CDS | 60.0% |
| !! | TGGCCGTCCGATTCGAGTTG+TGG | + | Chr4:44304828-44304847 | MsG0480020595.01.T01:CDS | 60.0% |
| AAGCTCTGCAGCGCGTGCAC+TGG | - | Chr4:44304587-44304606 | None:intergenic | 65.0% | |
| CACTGCCTCCTCGCACTTCC+CGG | + | Chr4:44304391-44304410 | MsG0480020595.01.T01:CDS | 65.0% | |
| CGAATCGGACGGCCACGATG+AGG | - | Chr4:44304823-44304842 | None:intergenic | 65.0% | |
| CGATGGCAGCAGTGTCACGG+AGG | - | Chr4:44304564-44304583 | None:intergenic | 65.0% | |
| GAAGTGCGAGGAGGCAGTGG+TGG | - | Chr4:44304390-44304409 | None:intergenic | 65.0% | |
| GCATACTCCGAAGCCGCTGC+CGG | + | Chr4:44304175-44304194 | MsG0480020595.01.T01:CDS | 65.0% | |
| GCGGCTTCGGAGTATGCACC+GGG | - | Chr4:44304172-44304191 | None:intergenic | 65.0% | |
| GGCCGTTGACGGTGGTGACA+TGG | - | Chr4:44304012-44304031 | None:intergenic | 65.0% | |
| GGCGGCGTTATGGCCGTTGA+CGG | - | Chr4:44304023-44304042 | None:intergenic | 65.0% | |
| GGCGTTATGGCCGTTGACGG+TGG | - | Chr4:44304020-44304039 | None:intergenic | 65.0% | |
| GGGGCGAACCCGGTTCAGAT+AGG | - | Chr4:44303825-44303844 | None:intergenic | 65.0% | |
| ! | TGCGAGGAGGCAGTGGTGGA+CGG | - | Chr4:44304386-44304405 | None:intergenic | 65.0% |
| ! | TTCGGACTCCGGGAAGTGCG+AGG | - | Chr4:44304402-44304421 | None:intergenic | 65.0% |
| !! | CGTGCATCGGTGCCGGAGAT+AGG | - | Chr4:44304117-44304136 | None:intergenic | 65.0% |
| CGATGTGGAGGCGGTGGCGA+AGG | - | Chr4:44304345-44304364 | None:intergenic | 70.0% | |
| CGCCACCGCCTCCACATCGT+CGG | + | Chr4:44304346-44304365 | MsG0480020595.01.T01:CDS | 70.0% | |
| CGGAGGGTGGAGCCGTGCAT+CGG | - | Chr4:44304130-44304149 | None:intergenic | 70.0% | |
| CGGCCTCAACGTAGCGCGTG+AGG | + | Chr4:44304492-44304511 | MsG0480020595.01.T01:CDS | 70.0% | |
| CGGCCTCACGCGCTACGTTG+AGG | - | Chr4:44304498-44304517 | None:intergenic | 70.0% | |
| CTCCGACGATGTGGAGGCGG+TGG | - | Chr4:44304351-44304370 | None:intergenic | 70.0% | |
| TGTGGAGGCGGTGGCGAAGG+AGG | - | Chr4:44304342-44304361 | None:intergenic | 70.0% | |
| ! | CGGGAAGTGCGAGGAGGCAG+TGG | - | Chr4:44304393-44304412 | None:intergenic | 70.0% |
| ! | GGACTCCGGGAAGTGCGAGG+AGG | - | Chr4:44304399-44304418 | None:intergenic | 70.0% |
| ! | GTGGAGCCGTGCATCGGTGC+CGG | - | Chr4:44304124-44304143 | None:intergenic | 70.0% |
| ! | TGCAGCGCGTGCACTGGCGA+TGG | - | Chr4:44304581-44304600 | None:intergenic | 70.0% |
| !! | CGAGGAGGCAGTGGTGGACG+GGG | - | Chr4:44304384-44304403 | None:intergenic | 70.0% |
| !! | GCGAGGAGGCAGTGGTGGAC+GGG | - | Chr4:44304385-44304404 | None:intergenic | 70.0% |
| GGAGGCGGTGGCGAAGGAGG+AGG | - | Chr4:44304339-44304358 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 44303785 | 44304975 | 44303785 | ID=MsG0480020595.01;Name=MsG0480020595.01 |
| Chr4 | mRNA | 44303785 | 44304975 | 44303785 | ID=MsG0480020595.01.T01;Parent=MsG0480020595.01;Name=MsG0480020595.01.T01;_AED=0.11;_eAED=0.11;_QI=0|-1|0|1|-1|1|1|0|396 |
| Chr4 | exon | 44303785 | 44304975 | 44303785 | ID=MsG0480020595.01.T01:exon:27514;Parent=MsG0480020595.01.T01 |
| Chr4 | CDS | 44303785 | 44304975 | 44303785 | ID=MsG0480020595.01.T01:cds;Parent=MsG0480020595.01.T01 |
| Gene Sequence |
| Protein sequence |
