AlfalfaGEDB | MsG0580029433.01

M. sativa cultivar ZhongmuNo.1 / MsG0580029433.01

KEGG: -
GO: GO:0005515
PFAM: PF00560 PF08263 PF13855

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029433.01.T01	AET00003.1	82.472	987	162	2	126	1101	34	1020	0	1561

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029433.01.T01	Q9S9U3	38.431	994	470	22	127	1075	44	940	2.46E-160	503

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029433.01.T01	G7KHF1	82.472	987	162	2	126	1101	34	1020	0.0	1561

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047884.01	MsG0580029433.01	0.802097	6.592699e-49	3.201497e-46
MsG0080048528.01	MsG0580029433.01	0.802192	6.305064e-49	3.069110e-46
MsG0080048845.01	MsG0580029433.01	0.858351	8.743345e-63	2.224830e-59
MsG0080048938.01	MsG0580029433.01	0.812986	3.216065e-51	2.074578e-48
MsG0080048969.01	MsG0580029433.01	0.870532	1.359090e-66	5.305101e-63
MsG0080049002.01	MsG0580029433.01	0.801288	9.664753e-49	4.598127e-46
MsG0080049130.01	MsG0580029433.01	0.810803	9.613655e-51	5.851708e-48
MsG0180000017.01	MsG0580029433.01	0.878110	3.660282e-69	1.887323e-65
MsG0180000040.01	MsG0580029433.01	0.821728	3.460155e-53	2.838077e-50
MsG0180000489.01	MsG0580029433.01	0.889585	2.124001e-73	1.724227e-69

Showing 1 to 10 of 483 entries

Previous1 2 3 4 5…49Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0580029433.01.T01	MTR_5g087320	82.472	987	162	2	126	1101	34	1020	1561
MsG0580029433.01.T01	MTR_5g086810	82.927	984	160	2	126	1101	38	1021	1550
MsG0580029433.01.T01	MTR_5g087090	77.973	1026	173	5	126	1101	38	1060	1503
MsG0580029433.01.T01	MTR_5g086570	76.577	1046	168	4	126	1096	32	1075	1492
MsG0580029433.01.T01	MTR_5g087080	81.904	956	164	5	126	1076	38	989	1482
MsG0580029433.01.T01	MTR_5g087070	75.714	1050	181	4	126	1101	38	1087	1476
MsG0580029433.01.T01	MTR_4g046920	77.290	1026	180	4	126	1101	38	1060	1468
MsG0580029433.01.T01	MTR_5g086630	79.034	973	195	4	126	1091	38	1008	1443
MsG0580029433.01.T01	MTR_5g086550	78.293	949	173	5	147	1087	57	980	1435
MsG0580029433.01.T01	MTR_5g086530	75.330	985	233	3	126	1101	32	1015	1387

Showing 1 to 10 of 1,818 entries

Previous1 2 3 4 5…182Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580029433.01.T01	AT5G27060	38.431	994	470	22	127	1075	45	941	2.47e-161	503
MsG0580029433.01.T01	AT5G27060	38.431	994	470	22	127	1075	44	940	2.51e-161	503
MsG0580029433.01.T01	AT5G27060	38.431	994	470	22	127	1075	44	940	2.51e-161	503
MsG0580029433.01.T01	AT1G47890	38.129	994	503	14	127	1076	81	1006	8.62e-160	501
MsG0580029433.01.T01	AT2G15080	37.209	1032	495	24	111	1074	20	966	1.13e-158	497
MsG0580029433.01.T01	AT2G15080	37.209	1032	495	24	111	1074	20	966	1.13e-158	497
MsG0580029433.01.T01	AT3G11010	38.477	972	475	25	127	1075	45	916	5.11e-154	483
MsG0580029433.01.T01	AT1G45616	37.602	984	533	20	127	1075	43	980	9.39e-153	481
MsG0580029433.01.T01	AT3G11010	38.144	970	472	24	127	1075	45	907	1.26e-152	479
MsG0580029433.01.T01	AT3G11010	38.300	1000	462	26	127	1075	45	940	1.23e-151	477

Showing 1 to 10 of 1,464 entries

Previous1 2 3 4 5…147Next

Find 210 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTTTCAGGGCAAGAC+GGG	0.508216	5:+96926254	None:intergenic
AAAATTAAAACAGTAAGATG+AGG	0.615749	5:+96922935	None:intergenic
AAAATTCTCAACTTGGGAAA+TGG	0.353962	5:+96921849	None:intergenic
AAAGAATTTGTCATCCTCTT+TGG	0.272490	5:-96923452	MsG0580029433.01.T01:CDS
AAAGAGGAACACAAATTATC+AGG	0.311073	5:+96923928	None:intergenic
AAAGTTGAATGGCAACCAAT+TGG	0.442634	5:-96922048	MsG0580029433.01.T01:CDS
AAATCTAATGAGTCGAGGTT+GGG	0.399690	5:+96922500	None:intergenic
AACAAACTTGAGTGGTGTTG+TGG	0.546283	5:-96922624	MsG0580029433.01.T01:CDS
AACAACAGAGCCAACACAAA+TGG	0.502149	5:-96921087	MsG0580029433.01.T01:CDS
AACCATCTCACAGGGTTCAT+TGG	0.417782	5:-96922761	MsG0580029433.01.T01:CDS

Showing 1 to 10 of 210 entries

Previous1 2 3 4 5…21Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTCTCAACTTGGGAAA+TGG	+	Chr5:96925525-96925544	None:intergenic	30.0%
AAAGAATTTGTCATCCTCTT+TGG	-	Chr5:96923919-96923938	MsG0580029433.01.T01:CDS	30.0%
AAAGAGGAACACAAATTATC+AGG	+	Chr5:96923446-96923465	None:intergenic	30.0%
AAAGTCATCTCTAATAAACG+TGG	+	Chr5:96921462-96921481	None:intergenic	30.0%
AAGACAGAATCTTGGAAAAA+TGG	-	Chr5:96923473-96923492	MsG0580029433.01.T01:CDS	30.0%
AAGATAAATCTAATGAGTCG+AGG	+	Chr5:96924879-96924898	None:intergenic	30.0%
AAGTCATCTCTAATAAACGT+GGG	+	Chr5:96921461-96921480	None:intergenic	30.0%
AAGTTAAGGTATGATACTTC+TGG	+	Chr5:96921828-96921847	None:intergenic	30.0%
AAGTTAGCAAATCATGATCA+CGG	-	Chr5:96921404-96921423	MsG0580029433.01.T01:CDS	30.0%
AATTTGGAAAATGACCATGT+AGG	+	Chr5:96924684-96924703	None:intergenic	30.0%

Showing 1 to 10 of 359 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	96921071	96926322	96921071	ID=MsG0580029433.01;Name=MsG0580029433.01
Chr5	mRNA	96921071	96926322	96921071	ID=MsG0580029433.01.T01;Parent=MsG0580029433.01;Name=MsG0580029433.01.T01;_AED=0.14;_eAED=0.14;_QI=0\|0\|0\|1\|1\|1\|2\|0\|1101
Chr5	exon	96925949	96926322	96925949	ID=MsG0580029433.01.T01:exon:24726;Parent=MsG0580029433.01.T01
Chr5	exon	96921071	96924002	96921071	ID=MsG0580029433.01.T01:exon:24725;Parent=MsG0580029433.01.T01
Chr5	CDS	96925949	96926322	96925949	ID=MsG0580029433.01.T01:cds;Parent=MsG0580029433.01.T01
Chr5	CDS	96921071	96924002	96921071	ID=MsG0580029433.01.T01:cds;Parent=MsG0580029433.01.T01

Gene Sequence

>MsG0580029433.01.T01

ATGAAGATTTTTTACTGGAACATTCGAGGAATTGGCAACTCCGAATCCCGTCTTGCCCTGAAAGATTTTTTCTTTGATCATTGTCCTTTGTTGATGTTTGTGGCTGAACCAATGGTTCCTTTCTCGAATATTCCTGGCTGGTATTGGAACTCTATTCAAGTTACTTCTTATTGTCTGAATAATAGAGCTCAGTTGTTTCCCAATCTTTGGGCGCTTTGGGGTCCTGACGTTATTCCCACTGTTGCTCTTCGAAACAGGTGGCATAATTGTACTTATGGATGCATTTTCGTCCTTTCATCTCATATTTTTCGTGAAGGAAATTGTTGTGCGGATAAGTTAGCAAATCATGATCACGGCTTGACTGATGTTATTTGCTCTGCCTTGTTACATTTCAAAAACGCATTTTCTGTCAACACTTCATCTAAACCTGATAATTTGTGTTCCTCTTTTTCTTTTAAGACAGAATCTTGGAAAAATGGTATAGATTGTTGCGAGTGGGATGGTGTCACGTGTGACACCGTGTCAGATCACGTGATCAGTCTGGACCTTAGTTGTAACGGTCTAGAAGGTGAATTACATCCCAATAGCACTGTCTTCCAGCTTAGACACCTTCAACAACTCAACTTGGCTTTTAATTATTTTTATGGGTCTTCAATGCCTATTGGTATTAGTGATTTAGTGAATCTCACATATCTAAATCTATCAAGTTGTGACCTCGCTGGTGATATTCCCTCCACAATCTCTCATTTGTCAAAATTAGTATCACTTGATCTTAGCAGTAACTTCGTGGAACTCAATTCATTGACATGGAAGAAACTCATTCATAATGCTACTAATTTAAGTGAGCTTTATCTGAATGGAGTGAACATGTCTTCCATCAGAGAGAGCTCTTTGTCTATGCTAAAGAATTTGTCATCCTCTTTGGTTTCTCTTATTCTAGGAGAAACTGGGTTGCAAGGAAATTTGTCCAGTGACATCCTCTCTTTACCTAATCTTCAAAAACTATATTTGTCATATAATTATGACCTTAGTGGTCAACTTCCAAAATCCAACTGGAGCACTCCTCTAAGGTACTTGGACCTCTCTTCCTCTGCTTTCTCAGGTGAAATTCCTTATTCCATAGGTCAATTGAAGTCTCTTACTCAATTATTCCTTTCACGTTGCAATTTTGATGGGATGATTCCTCTATCTTTGTGGAATCTCACTCAACTAACATATTTGGATCTTTCAAATAATAAACTTAACGGTGAGATCTCACCATTACTTTCAAACCTGGAACACCTCATTAATTGTGACCTTGGATATAATAACTTTAGTGGTAACATCCCAAACGTTTATGGAAATTTAAACAAATTGGAATATTTATTACTTTCATCTAACAACCTAACAGGCCAAGTTCCATCATCACTTTTTCATTTACCTCATCTTACTGTTTTAATTTTATCATCTAACAAACTAGTTGGCCCAATTCCAATTGAAATCACAAAACGTTCAAAATTGAGCATTGTGGATTTAAGCTTTAACATGTTAAATGGAACAGTTCCACATTGGTGTTATTCTTTGCCGTCGTTGTCAGAGTTGCAACTCAACAATAACCATCTCACAGGGTTCATTGGTGAGTTTTCAACTTATTCTTTGCAATCTTTGGATCTCTCTAATAACAACCTACATGGTCATTTTCCAAATTCAATTTTTCAACTCCAAAATCTTACCATCTTAGATTTGTCATCAACAAACTTGAGTGGTGTTGTGGATTTTCACCAATTTTCAAAATTAAACAAACTAACTTCCCTCCATCTTTCACACAATAGTTTTCTTTCTATCAACATTGATAGCAATGTTGACTCCATCTTCCCCAACCTCGACTCATTAGATTTATCTTCTGCTAATATTAGTAGTTTTCCTAAATTCCTAGCCCAACTACCAAATCTACCTTATTTAGATCTCTCCAATAACAACATTCATGGAAAAATTCCCGAATGGTTTCATAAGAAGCTCTTAAACTCATCGGAAAACATTGAATACATTGATCTGAGTTTCAACAAGTTGCAAGGAGATCTTCCAATTCCACCTTATGGCATTGTACACTTTTTACTCTCAAACAACAACTTCACTGGAGACATTTCATCAACATTCTGCAATACATGGATCTTGAATGTACTCAATTTGGCTCACAACAATTTAACAGGAATGATCCCAGAATGTTTGTTAGCACTTCCTTTTCTTTTTGTATTGGATTTACAAATGAACAACCTCTATGGAAGCATTCCTACAACTTTTTCCAAAGAAAATCAATTTGAGACGATAAAGTTGAATGGCAACCAATTGGAAGGACCACTACCAAAATCATTGGCTCAGTGCACAAACCTCGAAGTTTTAGACCTTGGAGAAAACAACATAGAGGACACATTTCCAAATTGGCTTGAAACTCTACAGCAGTTACAAGTACTCAGTTTAAGATCAAATAAATTTCATGGTGCAATCACATGCTCTAGCACCAAACATCCATTTCCCAAGTTGAGAATTTTTGATGTCTCTAACAACAATTTTAGTGGGCCCTTGCCAACATCATATATTAAGAACTTTCAAGGAATGATGAATGTGAATGACAGCCAAATTGGTTTGGAATACATGGGTAAAGCCAATTACTACAATGATTCTGTAGTGGTCATAATGAAAGGTTTTTATGTGGAGCTAACAAAGATATTGACTACTTTCACAACTATTGATTTATCAAATAACATGTTTGAAGGAGAAATTCCACAAGTCATTGGAGAATTACATTCTCTTAAAGGCCTTAACCTTTCGATCAATGGAATCAATGGTACCATTCCGCAATCTTTAAGCCATTTGAAAAATTTGGAGTGGTTGGACCTTTCAAGGAACCAGTTGACTGGTGAGATTCCTATTGCTTTGTCAAATTTGAATTTCCTCTCATTCTTGAATCTTTCAGAAAACCACCTTGAGGGAATCATACCTAGAGGTCAACAGTTTGGTACATTTGGAAATGATTCTTTTGAAGGAAATACAATGTTGTGTGGATTTCCATTGTCTAAATCATGCAAAAATGAGGAAGATCTGCCACCTCATTCAACATTTGAAGATGAAGAAGAATCAGGATTTGGCTGGAAAGCTGTTGCAATCGGATATGCATGTGGGGCAATATTCGGGTTGCTCTTGGGATATTATGTATTCTTCGTCACTGGAAAACCGCGGTGGCTTGTAAGACACGTTGAACATATGTTTAACATACAACTGAGAAGAACAAACAACAGAGCCAACACAAATGGTAGAAGAATGAATTAA

Protein sequence

>MsG0580029433.01.T01

MKIFYWNIRGIGNSESRLALKDFFFDHCPLLMFVAEPMVPFSNIPGWYWNSIQVTSYCLNNRAQLFPNLWALWGPDVIPTVALRNRWHNCTYGCIFVLSSHIFREGNCCADKLANHDHGLTDVICSALLHFKNAFSVNTSSKPDNLCSSFSFKTESWKNGIDCCEWDGVTCDTVSDHVISLDLSCNGLEGELHPNSTVFQLRHLQQLNLAFNYFYGSSMPIGISDLVNLTYLNLSSCDLAGDIPSTISHLSKLVSLDLSSNFVELNSLTWKKLIHNATNLSELYLNGVNMSSIRESSLSMLKNLSSSLVSLILGETGLQGNLSSDILSLPNLQKLYLSYNYDLSGQLPKSNWSTPLRYLDLSSSAFSGEIPYSIGQLKSLTQLFLSRCNFDGMIPLSLWNLTQLTYLDLSNNKLNGEISPLLSNLEHLINCDLGYNNFSGNIPNVYGNLNKLEYLLLSSNNLTGQVPSSLFHLPHLTVLILSSNKLVGPIPIEITKRSKLSIVDLSFNMLNGTVPHWCYSLPSLSELQLNNNHLTGFIGEFSTYSLQSLDLSNNNLHGHFPNSIFQLQNLTILDLSSTNLSGVVDFHQFSKLNKLTSLHLSHNSFLSINIDSNVDSIFPNLDSLDLSSANISSFPKFLAQLPNLPYLDLSNNNIHGKIPEWFHKKLLNSSENIEYIDLSFNKLQGDLPIPPYGIVHFLLSNNNFTGDISSTFCNTWILNVLNLAHNNLTGMIPECLLALPFLFVLDLQMNNLYGSIPTTFSKENQFETIKLNGNQLEGPLPKSLAQCTNLEVLDLGENNIEDTFPNWLETLQQLQVLSLRSNKFHGAITCSSTKHPFPKLRIFDVSNNNFSGPLPTSYIKNFQGMMNVNDSQIGLEYMGKANYYNDSVVVIMKGFYVELTKILTTFTTIDLSNNMFEGEIPQVIGELHSLKGLNLSINGINGTIPQSLSHLKNLEWLDLSRNQLTGEIPIALSNLNFLSFLNLSENHLEGIIPRGQQFGTFGNDSFEGNTMLCGFPLSKSCKNEEDLPPHSTFEDEEESGFGWKAVAIGYACGAIFGLLLGYYVFFVTGKPRWLVRHVEHMFNIQLRRTNNRANTNGRRMN*