Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048231.01.T01 | PNY16990.1 | 56.771 | 384 | 149 | 5 | 1 | 369 | 1 | 382 | 1.26E-149 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048231.01.T01 | A0A2K3PNX5 | 56.771 | 384 | 149 | 5 | 1 | 369 | 1 | 382 | 6.03e-150 | 437 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048231.01 | MsG0180000470.01 | 0.822018 | 2.964419e-53 | 2.451475e-50 |
| MsG0080048231.01 | MsG0180002195.01 | 0.800366 | 1.491016e-48 | 6.929977e-46 |
| MsG0080048231.01 | MsG0180002282.01 | 0.814324 | 1.632259e-51 | 1.091870e-48 |
| MsG0080048231.01 | MsG0180005960.01 | 0.805269 | 1.448108e-49 | 7.627968e-47 |
| MsG0080048231.01 | MsG0280007066.01 | 0.801674 | 8.054636e-49 | 3.869510e-46 |
| MsG0080048231.01 | MsG0280008894.01 | 0.816710 | 4.807190e-52 | 3.431575e-49 |
| MsG0080048231.01 | MsG0280009646.01 | 0.808360 | 3.218254e-50 | 1.836457e-47 |
| MsG0080048231.01 | MsG0280010443.01 | 0.830041 | 3.670461e-55 | 3.822954e-52 |
| MsG0080048231.01 | MsG0380011617.01 | 0.831089 | 2.033966e-55 | 2.184463e-52 |
| MsG0080048231.01 | MsG0380012330.01 | 0.812728 | 3.663091e-51 | 2.346971e-48 |
| MsG0080048231.01 | MsG0380012365.01 | 0.812561 | 3.985864e-51 | 2.542519e-48 |
| MsG0080048231.01 | MsG0380012947.01 | 0.801589 | 8.384190e-49 | 4.019176e-46 |
| MsG0080048231.01 | MsG0380014468.01 | 0.814362 | 1.601185e-51 | 1.072156e-48 |
| MsG0080048231.01 | MsG0380017349.01 | 0.817205 | 3.720564e-52 | 2.692226e-49 |
| MsG0080048231.01 | MsG0480018236.01 | 0.805879 | 1.078447e-49 | 5.770727e-47 |
| MsG0080048231.01 | MsG0480018883.01 | 0.802895 | 4.516240e-49 | 2.238180e-46 |
| MsG0080048231.01 | MsG0480021536.01 | 0.805776 | 1.133986e-49 | 6.051922e-47 |
| MsG0080048231.01 | MsG0480023251.01 | 0.809350 | 1.975858e-50 | 1.157453e-47 |
| MsG0080048231.01 | MsG0580024363.01 | -0.805484 | 1.305503e-49 | 6.915015e-47 |
| MsG0080048231.01 | MsG0580024552.01 | 0.815957 | 7.083094e-52 | 4.953291e-49 |
| MsG0080048231.01 | MsG0580025638.01 | 0.820350 | 7.186960e-53 | 5.672817e-50 |
| MsG0080048231.01 | MsG0580027719.01 | 0.806741 | 7.100818e-50 | 3.884170e-47 |
| MsG0080048231.01 | MsG0580027745.01 | 0.802721 | 4.904524e-49 | 2.419955e-46 |
| MsG0080048231.01 | MsG0580028990.01 | 0.822059 | 2.900227e-53 | 2.401217e-50 |
| MsG0080048231.01 | MsG0580029554.01 | 0.805363 | 1.383992e-49 | 7.308004e-47 |
| MsG0080048231.01 | MsG0680030561.01 | 0.812986 | 3.216280e-51 | 2.074714e-48 |
| MsG0080048231.01 | MsG0680031379.01 | 0.803134 | 4.030075e-49 | 2.009385e-46 |
| MsG0080048231.01 | MsG0680032157.01 | 0.808003 | 3.834736e-50 | 2.167657e-47 |
| MsG0080048231.01 | MsG0680035444.01 | 0.801408 | 9.130845e-49 | 4.357235e-46 |
| MsG0080048231.01 | MsG0780036201.01 | 0.820997 | 5.103061e-53 | 4.101452e-50 |
| MsG0080048231.01 | MsG0780040074.01 | 0.811010 | 8.668293e-51 | 5.306128e-48 |
| MsG0080048231.01 | MsG0780040576.01 | -0.809063 | 2.277060e-50 | 1.323609e-47 |
| MsG0080048231.01 | MsG0780040788.01 | 0.808132 | 3.599030e-50 | 2.041335e-47 |
| MsG0080048231.01 | MsG0880042161.01 | 0.813629 | 2.323232e-51 | 1.525081e-48 |
| MsG0080048231.01 | MsG0880042247.01 | 0.804398 | 2.202175e-49 | 1.134243e-46 |
| MsG0080048231.01 | MsG0880043941.01 | 0.800599 | 1.336087e-48 | 6.246711e-46 |
| MsG0080048231.01 | MsG0880044573.01 | 0.805085 | 1.582948e-49 | 8.298931e-47 |
| MsG0080048231.01 | MsG0880044574.01 | 0.800163 | 1.639805e-48 | 7.581842e-46 |
| MsG0080048231.01 | MsG0880046264.01 | 0.809501 | 1.834418e-50 | 1.078832e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048231.01.T01 | MTR_4g017485 | 90.455 | 220 | 21 | 0 | 149 | 368 | 1 | 220 | 8.95e-140 | 396 |
| MsG0080048231.01.T01 | MTR_7g105890 | 52.618 | 382 | 142 | 9 | 1 | 369 | 1 | 356 | 3.12e-127 | 370 |
| MsG0080048231.01.T01 | MTR_4g128540 | 50.949 | 369 | 153 | 7 | 1 | 366 | 1 | 344 | 1.45e-119 | 350 |
| MsG0080048231.01.T01 | MTR_0693s0050 | 61.250 | 240 | 87 | 5 | 1 | 237 | 1 | 237 | 4.02e-96 | 287 |
| MsG0080048231.01.T01 | MTR_4g128327 | 70.000 | 110 | 30 | 3 | 1 | 109 | 1 | 108 | 1.12e-46 | 155 |
| MsG0080048231.01.T01 | MTR_8g054100 | 36.842 | 152 | 88 | 4 | 1 | 148 | 11 | 158 | 4.43e-18 | 83.2 |
| MsG0080048231.01.T01 | MTR_1g016370 | 37.086 | 151 | 87 | 5 | 2 | 148 | 12 | 158 | 7.01e-17 | 80.9 |
| MsG0080048231.01.T01 | MTR_4g061370 | 37.086 | 151 | 87 | 5 | 2 | 148 | 1024 | 1170 | 1.52e-16 | 82.0 |
| MsG0080048231.01.T01 | MTR_1g073440 | 34.074 | 135 | 83 | 3 | 19 | 149 | 22 | 154 | 2.72e-16 | 79.3 |
| MsG0080048231.01.T01 | MTR_4g043620 | 22.881 | 354 | 201 | 10 | 14 | 363 | 18 | 303 | 1.65e-15 | 76.6 |
| MsG0080048231.01.T01 | MTR_2g435870 | 36.301 | 146 | 86 | 5 | 7 | 148 | 3 | 145 | 1.22e-14 | 73.9 |
| MsG0080048231.01.T01 | MTR_3g110155 | 33.929 | 168 | 101 | 6 | 3 | 166 | 13 | 174 | 1.33e-14 | 74.3 |
| MsG0080048231.01.T01 | MTR_8g006585 | 33.929 | 168 | 101 | 6 | 3 | 166 | 13 | 174 | 1.33e-14 | 74.3 |
| MsG0080048231.01.T01 | MTR_8g006695 | 33.929 | 168 | 101 | 6 | 3 | 166 | 13 | 174 | 1.33e-14 | 74.3 |
| MsG0080048231.01.T01 | MTR_8g069895 | 22.316 | 354 | 203 | 10 | 14 | 363 | 18 | 303 | 2.72e-14 | 73.2 |
| MsG0080048231.01.T01 | MTR_8g468830 | 22.792 | 351 | 206 | 10 | 23 | 369 | 25 | 314 | 4.54e-14 | 72.8 |
| MsG0080048231.01.T01 | MTR_2g021280 | 22.277 | 404 | 224 | 13 | 14 | 363 | 18 | 385 | 5.61e-14 | 73.2 |
| MsG0080048231.01.T01 | MTR_8g105430 | 33.088 | 136 | 82 | 5 | 23 | 153 | 50 | 181 | 9.91e-13 | 67.8 |
| MsG0080048231.01.T01 | MTR_1g080080 | 28.500 | 200 | 129 | 6 | 3 | 194 | 14 | 207 | 1.17e-12 | 68.6 |
| MsG0080048231.01.T01 | MTR_2g086350 | 28.500 | 200 | 129 | 6 | 3 | 194 | 14 | 207 | 1.21e-12 | 68.6 |
| MsG0080048231.01.T01 | MTR_2g018710 | 31.333 | 150 | 96 | 4 | 3 | 148 | 14 | 160 | 2.19e-12 | 67.8 |
| MsG0080048231.01.T01 | MTR_5g018260 | 23.836 | 365 | 201 | 14 | 14 | 363 | 18 | 320 | 3.19e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 80 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGACTAACAAACCTATTA+AGG | 0.181434 | contig249end:-4110 | MsG0080048231.01.T01:CDS |
| TTTGATATCTCAATCGAATT+TGG | 0.187362 | contig249end:-4029 | MsG0080048231.01.T01:CDS |
| GTAAAGTTCATTAGAATAAA+TGG | 0.218391 | contig249end:-4875 | MsG0080048231.01.T01:CDS |
| TAGGTTTGTTAGTCATGTTT+TGG | 0.255666 | contig249end:+4116 | None:intergenic |
| GATGGTTACCAAAGGTCTTT+TGG | 0.275073 | contig249end:-3918 | MsG0080048231.01.T01:CDS |
| TTCAAAAGTAAACAAGTTAA+TGG | 0.276894 | contig249end:-3980 | MsG0080048231.01.T01:CDS |
| TCCACAGGTTGAACCAATTC+AGG | 0.302798 | contig249end:+4418 | None:intergenic |
| CTTTGGAAGTTTCTGAAGTA+TGG | 0.306549 | contig249end:-4734 | MsG0080048231.01.T01:CDS |
| GGCCTCAAGTAATGATAAAA+TGG | 0.311908 | contig249end:-4960 | MsG0080048231.01.T01:CDS |
| GACGTGGATCATCATTTAAA+TGG | 0.341822 | contig249end:-4853 | MsG0080048231.01.T01:CDS |
| AGAGTTTGTTGCACCCTCTA+TGG | 0.342483 | contig249end:-4443 | MsG0080048231.01.T01:CDS |
| TTTCTGAAGTATGGTGAAAC+TGG | 0.344481 | contig249end:-4725 | MsG0080048231.01.T01:CDS |
| CAACTAAGCTTTCCTGTAAC+AGG | 0.356024 | contig249end:+4689 | None:intergenic |
| ACCCTCTATGGATCCTGAAT+TGG | 0.374643 | contig249end:-4431 | MsG0080048231.01.T01:CDS |
| TTTGATGACAATTATGCAAC+TGG | 0.378059 | contig249end:-4469 | MsG0080048231.01.T01:CDS |
| TGAAGAAAGATTGGCGACTT+TGG | 0.383779 | contig249end:-4751 | MsG0080048231.01.T01:CDS |
| TTAGGATGGGATCCTGTTAC+AGG | 0.384207 | contig249end:-4701 | MsG0080048231.01.T01:CDS |
| TGATGGCCTCTTCAAAATCT+TGG | 0.394926 | contig249end:+4819 | None:intergenic |
| ATCCTTCGATTGAGGAATAC+TGG | 0.409014 | contig249end:-4501 | MsG0080048231.01.T01:CDS |
| ATGATGATTCTAGGAAATCT+TGG | 0.417616 | contig249end:-3811 | MsG0080048231.01.T01:CDS |
| CAGCAATGACTGTTATAAAT+CGG | 0.423213 | contig249end:-3940 | MsG0080048231.01.T01:CDS |
| ATGACTAACAAACCTATTAA+GGG | 0.442092 | contig249end:-4109 | MsG0080048231.01.T01:CDS |
| CCCACCTCATTCATAAAATT+AGG | 0.455879 | contig249end:+4250 | None:intergenic |
| AATCATCATTATGAGATTGA+TGG | 0.460371 | contig249end:-4349 | MsG0080048231.01.T01:CDS |
| CATGTGCCTACCCAAGGTCT+TGG | 0.473985 | contig249end:-4220 | MsG0080048231.01.T01:CDS |
| TAGATACTATGAAGAAAGAT+TGG | 0.475774 | contig249end:-4760 | MsG0080048231.01.T01:CDS |
| AAGTATGGTGAAACTGGATT+AGG | 0.490077 | contig249end:-4719 | MsG0080048231.01.T01:CDS |
| ATCTCAATCGAATTTGGCAT+TGG | 0.491767 | contig249end:-4023 | MsG0080048231.01.T01:CDS |
| GTGGAACATGTTAATGTTGA+GGG | 0.493344 | contig249end:-4400 | MsG0080048231.01.T01:CDS |
| CAAGACCTTGGGTAGGCACA+TGG | 0.495437 | contig249end:+4221 | None:intergenic |
| GTGCCTACCCAAGGTCTTGG+AGG | 0.510178 | contig249end:-4217 | MsG0080048231.01.T01:CDS |
| TCAGGAGGTGCAACAAAGCT+AGG | 0.523054 | contig249end:-4067 | MsG0080048231.01.T01:CDS |
| TTGTGTACCTCCAAGACCTT+GGG | 0.536559 | contig249end:+4210 | None:intergenic |
| GTCGGTAGATCCTTCGATTG+AGG | 0.536831 | contig249end:-4509 | MsG0080048231.01.T01:CDS |
| CTTGTGTACCTCCAAGACCT+TGG | 0.541010 | contig249end:+4209 | None:intergenic |
| GCATTGGAGATAATGCAATC+TGG | 0.547246 | contig249end:-4007 | MsG0080048231.01.T01:CDS |
| ACTGAAGGTGCACAAGTGAC+TGG | 0.548205 | contig249end:-4172 | MsG0080048231.01.T01:CDS |
| GATTGAGAATGAAACAAGGC+GGG | 0.549521 | contig249end:-3858 | MsG0080048231.01.T01:CDS |
| AACAGTCATTGCTGTAGCAA+TGG | 0.551051 | contig249end:+3949 | None:intergenic |
| GGTACCCATGTGCCTACCCA+AGG | 0.553541 | contig249end:-4226 | MsG0080048231.01.T01:CDS |
| AACATGTTAATGTTGAGGGG+GGG | 0.561184 | contig249end:-4396 | MsG0080048231.01.T01:CDS |
| AGCTTAGTTGTTCAGATGAG+TGG | 0.562434 | contig249end:-4676 | MsG0080048231.01.T01:CDS |
| CAGACGACATGCTTCTGAAG+TGG | 0.563314 | contig249end:-4305 | MsG0080048231.01.T01:CDS |
| TGGATCATCATTTAAATGGA+AGG | 0.564174 | contig249end:-4849 | MsG0080048231.01.T01:CDS |
| CAAGTGACTGGTCAAGGTGG+AGG | 0.567091 | contig249end:-4160 | MsG0080048231.01.T01:CDS |
| ATGGTGAAACTGGATTAGGA+TGG | 0.575573 | contig249end:-4715 | MsG0080048231.01.T01:CDS |
| CTCCAGTATTCCTCAATCGA+AGG | 0.577951 | contig249end:+4499 | None:intergenic |
| TGGAACATGTTAATGTTGAG+GGG | 0.580928 | contig249end:-4399 | MsG0080048231.01.T01:CDS |
| TCAAGTAATGATAAAATGGA+AGG | 0.588534 | contig249end:-4956 | MsG0080048231.01.T01:CDS |
| AATGACTGTTATAAATCGGA+TGG | 0.589954 | contig249end:-3936 | MsG0080048231.01.T01:CDS |
| TGGTGAAACTGGATTAGGAT+GGG | 0.590498 | contig249end:-4714 | MsG0080048231.01.T01:CDS |
| TCAACATTAACATGTTCCAC+AGG | 0.594898 | contig249end:+4403 | None:intergenic |
| TCCTGAATTGGTTCAACCTG+TGG | 0.597923 | contig249end:-4419 | MsG0080048231.01.T01:CDS |
| TTCATTAGAATAAATGGACG+TGG | 0.598170 | contig249end:-4869 | MsG0080048231.01.T01:CDS |
| AATCGTAAAAGAAAACGCTC+AGG | 0.598724 | contig249end:-4085 | MsG0080048231.01.T01:CDS |
| TAGTTGTTCAGATGAGTGGT+GGG | 0.602613 | contig249end:-4672 | MsG0080048231.01.T01:CDS |
| TTAGTTGTTCAGATGAGTGG+TGG | 0.603094 | contig249end:-4673 | MsG0080048231.01.T01:CDS |
| TGGAAAAGGGTAGTGAATTG+TGG | 0.603778 | contig249end:-3898 | MsG0080048231.01.T01:CDS |
| CGTAAAAGAAAACGCTCAGG+AGG | 0.613684 | contig249end:-4082 | MsG0080048231.01.T01:CDS |
| AACCAATTCAGGATCCATAG+AGG | 0.615080 | contig249end:+4429 | None:intergenic |
| GGTGCACAAGTGACTGGTCA+AGG | 0.615876 | contig249end:-4166 | MsG0080048231.01.T01:CDS |
| GCACCTTCAGTATATTCACT+AGG | 0.618197 | contig249end:+4184 | None:intergenic |
| TGACTAACAAACCTATTAAG+GGG | 0.621684 | contig249end:-4108 | MsG0080048231.01.T01:CDS |
| CATCATTATGAGATTGATGG+AGG | 0.622802 | contig249end:-4346 | MsG0080048231.01.T01:CDS |
| AAGACCTTGGGTAGGCACAT+GGG | 0.624761 | contig249end:+4222 | None:intergenic |
| GGAACATGTTAATGTTGAGG+GGG | 0.640316 | contig249end:-4398 | MsG0080048231.01.T01:CDS |
| GAACATGTTAATGTTGAGGG+GGG | 0.642314 | contig249end:-4397 | MsG0080048231.01.T01:CDS |
| ACCAATTCAGGATCCATAGA+GGG | 0.643334 | contig249end:+4430 | None:intergenic |
| TTGATGACAATTATGCAACT+GGG | 0.647938 | contig249end:-4468 | MsG0080048231.01.T01:CDS |
| TGTGGAACATGTTAATGTTG+AGG | 0.649163 | contig249end:-4401 | MsG0080048231.01.T01:CDS |
| GTACCTAGTGAATATACTGA+AGG | 0.660409 | contig249end:-4187 | MsG0080048231.01.T01:CDS |
| TTGGAGATAATGCAATCTGG+TGG | 0.662967 | contig249end:-4004 | MsG0080048231.01.T01:CDS |
| ATAAATCGGATGGTTACCAA+AGG | 0.663581 | contig249end:-3926 | MsG0080048231.01.T01:CDS |
| GCACAAGTGACTGGTCAAGG+TGG | 0.681395 | contig249end:-4163 | MsG0080048231.01.T01:CDS |
| GTTTGATTGAGAATGAAACA+AGG | 0.697331 | contig249end:-3862 | MsG0080048231.01.T01:CDS |
| GTACCTCCAAGACCTTGGGT+AGG | 0.709359 | contig249end:+4214 | None:intergenic |
| TGATTGAGAATGAAACAAGG+CGG | 0.710780 | contig249end:-3859 | MsG0080048231.01.T01:CDS |
| TGATGACAATTATGCAACTG+GGG | 0.713435 | contig249end:-4467 | MsG0080048231.01.T01:CDS |
| GGAGGTGCAACAAAGCTAGG+TGG | 0.721408 | contig249end:-4064 | MsG0080048231.01.T01:CDS |
| TTGTCTGTAGGAGAAACCTG+AGG | 0.744782 | contig249end:-4551 | MsG0080048231.01.T01:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTTATATAAGATCTGA+AGG | - | contig249end:4151-4170 | MsG0080048231.01.T01:CDS | 15.0% |
| !! | TAAAAAATATCGTAATAAGT+CGG | - | contig249end:4216-4235 | MsG0080048231.01.T01:CDS | 15.0% |
| !!! | TTATTCTTTAAAGTTTTTGA+GGG | + | contig249end:3961-3980 | None:intergenic | 15.0% |
| !! | GTAAAGTTCATTAGAATAAA+TGG | - | contig249end:3868-3887 | MsG0080048231.01.T01:CDS | 20.0% |
| !! | TTCAAAAGTAAACAAGTTAA+TGG | - | contig249end:4763-4782 | MsG0080048231.01.T01:CDS | 20.0% |
| !!! | CAAAATTTCTTTTCATATTC+AGG | + | contig249end:3838-3857 | None:intergenic | 20.0% |
| !!! | CTTATTCTTTAAAGTTTTTG+AGG | + | contig249end:3962-3981 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGGGAATGTAAAT+AGG | + | contig249end:4962-4981 | None:intergenic | 20.0% |
| ! | AATCATCATTATGAGATTGA+TGG | - | contig249end:4394-4413 | MsG0080048231.01.T01:CDS | 25.0% |
| ! | ATGACTAACAAACCTATTAA+GGG | - | contig249end:4634-4653 | MsG0080048231.01.T01:intron | 25.0% |
| ! | TAGATACTATGAAGAAAGAT+TGG | - | contig249end:3983-4002 | MsG0080048231.01.T01:CDS | 25.0% |
| ! | TCAAGTAATGATAAAATGGA+AGG | - | contig249end:3787-3806 | MsG0080048231.01.T01:CDS | 25.0% |
| ! | TTTGATATCTCAATCGAATT+TGG | - | contig249end:4714-4733 | MsG0080048231.01.T01:CDS | 25.0% |
| !! | TTCCATTTTATCATTACTTG+AGG | + | contig249end:3788-3807 | None:intergenic | 25.0% |
| !! | TTTGCCTAATTTTATGAATG+AGG | - | contig249end:4489-4508 | MsG0080048231.01.T01:CDS | 25.0% |
| AATGACTGTTATAAATCGGA+TGG | - | contig249end:4807-4826 | MsG0080048231.01.T01:CDS | 30.0% | |
| ATCAACTTATCTTTGTCTGT+AGG | - | contig249end:4180-4199 | MsG0080048231.01.T01:CDS | 30.0% | |
| CAGCAATGACTGTTATAAAT+CGG | - | contig249end:4803-4822 | MsG0080048231.01.T01:CDS | 30.0% | |
| CATGACTAACAAACCTATTA+AGG | - | contig249end:4633-4652 | MsG0080048231.01.T01:intron | 30.0% | |
| GTTTGATTGAGAATGAAACA+AGG | - | contig249end:4881-4900 | MsG0080048231.01.T01:CDS | 30.0% | |
| TGACTAACAAACCTATTAAG+GGG | - | contig249end:4635-4654 | MsG0080048231.01.T01:intron | 30.0% | |
| TGGATCATCATTTAAATGGA+AGG | - | contig249end:3894-3913 | MsG0080048231.01.T01:CDS | 30.0% | |
| TTCATTAGAATAAATGGACG+TGG | - | contig249end:3874-3893 | MsG0080048231.01.T01:CDS | 30.0% | |
| ! | ATGATGATTCTAGGAAATCT+TGG | - | contig249end:4932-4951 | MsG0080048231.01.T01:CDS | 30.0% |
| ! | CCTAATTTTATGAATGAGGT+GGG | - | contig249end:4493-4512 | MsG0080048231.01.T01:CDS | 30.0% |
| ! | TTGATGACAATTATGCAACT+GGG | - | contig249end:4275-4294 | MsG0080048231.01.T01:CDS | 30.0% |
| ! | TTTGATGACAATTATGCAAC+TGG | - | contig249end:4274-4293 | MsG0080048231.01.T01:CDS | 30.0% |
| !! | AAGTTTTTGAGGGAACTTTT+CGG | + | contig249end:3951-3970 | None:intergenic | 30.0% |
| !!! | AGGTTTGTTAGTCATGTTTT+GGG | + | contig249end:4629-4648 | None:intergenic | 30.0% |
| !!! | TAGGTTTGTTAGTCATGTTT+TGG | + | contig249end:4630-4649 | None:intergenic | 30.0% |
| !!! | TTACGATATTTTTTAGCCTC+AGG | + | contig249end:4211-4230 | None:intergenic | 30.0% |
| AAGTATGGTGAAACTGGATT+AGG | - | contig249end:4024-4043 | MsG0080048231.01.T01:CDS | 35.0% | |
| AATCGTAAAAGAAAACGCTC+AGG | - | contig249end:4658-4677 | MsG0080048231.01.T01:CDS | 35.0% | |
| ATAAATCGGATGGTTACCAA+AGG | - | contig249end:4817-4836 | MsG0080048231.01.T01:CDS | 35.0% | |
| ATCTCAATCGAATTTGGCAT+TGG | - | contig249end:4720-4739 | MsG0080048231.01.T01:CDS | 35.0% | |
| CATCATTATGAGATTGATGG+AGG | - | contig249end:4397-4416 | MsG0080048231.01.T01:CDS | 35.0% | |
| CCCACCTCATTCATAAAATT+AGG | + | contig249end:4496-4515 | None:intergenic | 35.0% | |
| GACGTGGATCATCATTTAAA+TGG | - | contig249end:3890-3909 | MsG0080048231.01.T01:CDS | 35.0% | |
| GGCCTCAAGTAATGATAAAA+TGG | - | contig249end:3783-3802 | MsG0080048231.01.T01:CDS | 35.0% | |
| GTACCTAGTGAATATACTGA+AGG | - | contig249end:4556-4575 | MsG0080048231.01.T01:intron | 35.0% | |
| GTGGAACATGTTAATGTTGA+GGG | - | contig249end:4343-4362 | MsG0080048231.01.T01:CDS | 35.0% | |
| TCAACATTAACATGTTCCAC+AGG | + | contig249end:4343-4362 | None:intergenic | 35.0% | |
| TGATGACAATTATGCAACTG+GGG | - | contig249end:4276-4295 | MsG0080048231.01.T01:CDS | 35.0% | |
| TGATTGAGAATGAAACAAGG+CGG | - | contig249end:4884-4903 | MsG0080048231.01.T01:CDS | 35.0% | |
| TGGAACATGTTAATGTTGAG+GGG | - | contig249end:4344-4363 | MsG0080048231.01.T01:CDS | 35.0% | |
| TGTGGAACATGTTAATGTTG+AGG | - | contig249end:4342-4361 | MsG0080048231.01.T01:CDS | 35.0% | |
| ! | AATTTTATGAATGAGGTGGG+TGG | - | contig249end:4496-4515 | MsG0080048231.01.T01:CDS | 35.0% |
| ! | CGGGAGATTTTTCTAAACAT+GGG | - | contig249end:4904-4923 | MsG0080048231.01.T01:CDS | 35.0% |
| ! | CTTTTACGATTCCCCTTAAT+AGG | + | contig249end:4649-4668 | None:intergenic | 35.0% |
| ! | GCCTAATTTTATGAATGAGG+TGG | - | contig249end:4492-4511 | MsG0080048231.01.T01:CDS | 35.0% |
| ! | GGAGATTTTTCTAAACATGG+GGG | - | contig249end:4906-4925 | MsG0080048231.01.T01:CDS | 35.0% |
| ! | GGGAGATTTTTCTAAACATG+GGG | - | contig249end:4905-4924 | MsG0080048231.01.T01:CDS | 35.0% |
| ! | GTGGTGGGATAGAAAAATTA+AGG | - | contig249end:4086-4105 | MsG0080048231.01.T01:CDS | 35.0% |
| !! | ACCAAAGGTCTTTTGGAAAA+GGG | - | contig249end:4832-4851 | MsG0080048231.01.T01:CDS | 35.0% |
| !! | CTTTGGAAGTTTCTGAAGTA+TGG | - | contig249end:4009-4028 | MsG0080048231.01.T01:CDS | 35.0% |
| !! | GATTCACCAAGATTTTGAAG+AGG | - | contig249end:3918-3937 | MsG0080048231.01.T01:CDS | 35.0% |
| !! | TACCAAAGGTCTTTTGGAAA+AGG | - | contig249end:4831-4850 | MsG0080048231.01.T01:CDS | 35.0% |
| !! | TTTCTGAAGTATGGTGAAAC+TGG | - | contig249end:4018-4037 | MsG0080048231.01.T01:CDS | 35.0% |
| !!! | TGGAAGGACTCAGTTTTAAA+TGG | - | contig249end:3803-3822 | MsG0080048231.01.T01:CDS | 35.0% |
| AACAGTCATTGCTGTAGCAA+TGG | + | contig249end:4797-4816 | None:intergenic | 40.0% | |
| AACATGTTAATGTTGAGGGG+GGG | - | contig249end:4347-4366 | MsG0080048231.01.T01:CDS | 40.0% | |
| AACCAATTCAGGATCCATAG+AGG | + | contig249end:4317-4336 | None:intergenic | 40.0% | |
| ACCAATTCAGGATCCATAGA+GGG | + | contig249end:4316-4335 | None:intergenic | 40.0% | |
| AGCTTAGTTGTTCAGATGAG+TGG | - | contig249end:4067-4086 | MsG0080048231.01.T01:CDS | 40.0% | |
| ATCCTTCGATTGAGGAATAC+TGG | - | contig249end:4242-4261 | MsG0080048231.01.T01:CDS | 40.0% | |
| CAACTAAGCTTTCCTGTAAC+AGG | + | contig249end:4057-4076 | None:intergenic | 40.0% | |
| GAACATGTTAATGTTGAGGG+GGG | - | contig249end:4346-4365 | MsG0080048231.01.T01:CDS | 40.0% | |
| GATTGAGAATGAAACAAGGC+GGG | - | contig249end:4885-4904 | MsG0080048231.01.T01:CDS | 40.0% | |
| GCACCTTCAGTATATTCACT+AGG | + | contig249end:4562-4581 | None:intergenic | 40.0% | |
| GCATTGGAGATAATGCAATC+TGG | - | contig249end:4736-4755 | MsG0080048231.01.T01:CDS | 40.0% | |
| GGAACATGTTAATGTTGAGG+GGG | - | contig249end:4345-4364 | MsG0080048231.01.T01:CDS | 40.0% | |
| TAGTTGTTCAGATGAGTGGT+GGG | - | contig249end:4071-4090 | MsG0080048231.01.T01:CDS | 40.0% | |
| TGAAGAAAGATTGGCGACTT+TGG | - | contig249end:3992-4011 | MsG0080048231.01.T01:CDS | 40.0% | |
| TGATGGCCTCTTCAAAATCT+TGG | + | contig249end:3927-3946 | None:intergenic | 40.0% | |
| TGGAAAAGGGTAGTGAATTG+TGG | - | contig249end:4845-4864 | MsG0080048231.01.T01:CDS | 40.0% | |
| TTAGTTGTTCAGATGAGTGG+TGG | - | contig249end:4070-4089 | MsG0080048231.01.T01:CDS | 40.0% | |
| TTGGAGATAATGCAATCTGG+TGG | - | contig249end:4739-4758 | MsG0080048231.01.T01:CDS | 40.0% | |
| ! | ACCCTTTTCCAAAAGACCTT+TGG | + | contig249end:4836-4855 | None:intergenic | 40.0% |
| ! | ATGGTGAAACTGGATTAGGA+TGG | - | contig249end:4028-4047 | MsG0080048231.01.T01:CDS | 40.0% |
| ! | GATGGTTACCAAAGGTCTTT+TGG | - | contig249end:4825-4844 | MsG0080048231.01.T01:CDS | 40.0% |
| ! | GCGGGAGATTTTTCTAAACA+TGG | - | contig249end:4903-4922 | MsG0080048231.01.T01:CDS | 40.0% |
| ! | TGGTGAAACTGGATTAGGAT+GGG | - | contig249end:4029-4048 | MsG0080048231.01.T01:CDS | 40.0% |
| ACATGTTAATGTTGAGGGGG+GGG | - | contig249end:4348-4367 | MsG0080048231.01.T01:CDS | 45.0% | |
| ACCCTCTATGGATCCTGAAT+TGG | - | contig249end:4312-4331 | MsG0080048231.01.T01:CDS | 45.0% | |
| CGTAAAAGAAAACGCTCAGG+AGG | - | contig249end:4661-4680 | MsG0080048231.01.T01:CDS | 45.0% | |
| CTCCAGTATTCCTCAATCGA+AGG | + | contig249end:4247-4266 | None:intergenic | 45.0% | |
| TTAGGATGGGATCCTGTTAC+AGG | - | contig249end:4042-4061 | MsG0080048231.01.T01:CDS | 45.0% | |
| TTGTCTGTAGGAGAAACCTG+AGG | - | contig249end:4192-4211 | MsG0080048231.01.T01:CDS | 45.0% | |
| TTGTGTACCTCCAAGACCTT+GGG | + | contig249end:4536-4555 | None:intergenic | 45.0% | |
| ! | TCCACAGGTTGAACCAATTC+AGG | + | contig249end:4328-4347 | None:intergenic | 45.0% |
| ! | TCCTGAATTGGTTCAACCTG+TGG | - | contig249end:4324-4343 | MsG0080048231.01.T01:CDS | 45.0% |
| ! | TGAGGGAACTTTTCGGTTGA+TGG | + | contig249end:3944-3963 | None:intergenic | 45.0% |
| ! | TGGGGGATGATGATGATTCT+AGG | - | contig249end:4923-4942 | MsG0080048231.01.T01:CDS | 45.0% |
| !! | AGAGTTTGTTGCACCCTCTA+TGG | - | contig249end:4300-4319 | MsG0080048231.01.T01:CDS | 45.0% |
| AAGACCTTGGGTAGGCACAT+GGG | + | contig249end:4524-4543 | None:intergenic | 50.0% | |
| CTTGTGTACCTCCAAGACCT+TGG | + | contig249end:4537-4556 | None:intergenic | 50.0% | |
| GGGGGATAAAGAAAGTGGTG+GGG | - | contig249end:4366-4385 | MsG0080048231.01.T01:CDS | 50.0% | |
| GGGGGGATAAAGAAAGTGGT+GGG | - | contig249end:4365-4384 | MsG0080048231.01.T01:CDS | 50.0% | |
| GTCGGTAGATCCTTCGATTG+AGG | - | contig249end:4234-4253 | MsG0080048231.01.T01:CDS | 50.0% | |
| ! | ACTGAAGGTGCACAAGTGAC+TGG | - | contig249end:4571-4590 | MsG0080048231.01.T01:intron | 50.0% |
| ! | CAGACGACATGCTTCTGAAG+TGG | - | contig249end:4438-4457 | MsG0080048231.01.T01:CDS | 50.0% |
| ! | TCAGGAGGTGCAACAAAGCT+AGG | - | contig249end:4676-4695 | MsG0080048231.01.T01:CDS | 50.0% |
| CAAGACCTTGGGTAGGCACA+TGG | + | contig249end:4525-4544 | None:intergenic | 55.0% | |
| CATGTGCCTACCCAAGGTCT+TGG | - | contig249end:4523-4542 | MsG0080048231.01.T01:CDS | 55.0% | |
| GAGGGGGGGGATAAAGAAAG+TGG | - | contig249end:4361-4380 | MsG0080048231.01.T01:CDS | 55.0% | |
| GGGGGGGATAAAGAAAGTGG+TGG | - | contig249end:4364-4383 | MsG0080048231.01.T01:CDS | 55.0% | |
| GTACCTCCAAGACCTTGGGT+AGG | + | contig249end:4532-4551 | None:intergenic | 55.0% | |
| ! | CAAGTGACTGGTCAAGGTGG+AGG | - | contig249end:4583-4602 | MsG0080048231.01.T01:intron | 55.0% |
| ! | GCACAAGTGACTGGTCAAGG+TGG | - | contig249end:4580-4599 | MsG0080048231.01.T01:intron | 55.0% |
| ! | GGAGGTGCAACAAAGCTAGG+TGG | - | contig249end:4679-4698 | MsG0080048231.01.T01:CDS | 55.0% |
| ! | GGTGCACAAGTGACTGGTCA+AGG | - | contig249end:4577-4596 | MsG0080048231.01.T01:intron | 55.0% |
| GGTACCCATGTGCCTACCCA+AGG | - | contig249end:4517-4536 | MsG0080048231.01.T01:CDS | 60.0% | |
| GTGCCTACCCAAGGTCTTGG+AGG | - | contig249end:4526-4545 | MsG0080048231.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig249end | gene | 3781 | 4984 | 3781 | ID=MsG0080048231.01;Name=MsG0080048231.01 |
| contig249end | mRNA | 3781 | 4984 | 3781 | ID=MsG0080048231.01.T01;Parent=MsG0080048231.01;Name=MsG0080048231.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|369 |
| contig249end | exon | 4658 | 4984 | 4658 | ID=MsG0080048231.01.T01:exon:10818;Parent=MsG0080048231.01.T01 |
| contig249end | exon | 3781 | 4563 | 3781 | ID=MsG0080048231.01.T01:exon:10819;Parent=MsG0080048231.01.T01 |
| contig249end | CDS | 4658 | 4984 | 4658 | ID=MsG0080048231.01.T01:cds;Parent=MsG0080048231.01.T01 |
| contig249end | CDS | 3781 | 4563 | 3781 | ID=MsG0080048231.01.T01:cds;Parent=MsG0080048231.01.T01 |
| Gene Sequence |
| Protein sequence |
