AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000475.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000475.01.T01 MTR_1g015120 87.418 1065 61 3 1 1015 1 1042 0.0 1857
MsG0180000475.01.T01 MTR_2g040970 34.890 1178 570 32 25 1014 19 1187 8.69e-173 537
MsG0180000475.01.T01 MTR_2g040970 34.694 1176 575 31 25 1014 19 1187 8.18e-172 537
MsG0180000475.01.T01 MTR_4g125670 35.332 1101 563 22 24 1014 9 1070 1.45e-170 528
MsG0180000475.01.T01 MTR_6g080430 38.835 206 121 3 44 246 78 281 1.16e-34 143
MsG0180000475.01.T01 MTR_6g080430 26.442 416 221 11 618 1011 514 866 1.39e-26 117
MsG0180000475.01.T01 MTR_8g106680 36.207 174 105 3 76 246 105 275 7.05e-27 118
MsG0180000475.01.T01 MTR_8g106680 24.883 426 224 14 618 1015 514 871 4.84e-24 109
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000475.01.T01 AT5G26160 37.811 1005 524 24 18 993 8 940 7.00e-174 533
MsG0180000475.01.T01 AT5G26160 37.811 1005 524 24 18 993 8 940 1.38e-173 533
MsG0180000475.01.T01 AT5G26160 37.811 1005 524 24 18 993 8 940 1.38e-173 533
MsG0180000475.01.T01 AT5G20610 35.962 634 311 15 464 1015 544 1164 5.56e-94 324
MsG0180000475.01.T01 AT5G20610 40.063 317 153 6 26 320 13 314 2.76e-57 216
MsG0180000475.01.T01 AT1G42550 37.725 167 98 4 85 246 123 288 5.58e-27 119
MsG0180000475.01.T01 AT1G42550 25.478 314 156 12 552 826 458 732 2.94e-12 71.6

Find 204 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAGATCTTCAAGAATTT+TGG 0.094286 1:+6572030 None:intergenic
TCTGATTTATCTTTAATTAT+TGG 0.172054 1:-6572109 MsG0180000475.01.T01:CDS
TGGCAGAAAGCGCAGTTATT+TGG 0.193805 1:-6571050 MsG0180000475.01.T01:CDS
GAGATAGTAGAAGGCTTAAA+AGG 0.200216 1:+6573609 None:intergenic
GTACATAGATGTTCGGTTTA+TGG 0.206716 1:-6573279 MsG0180000475.01.T01:CDS
GATATCTTGATTCAACAATT+TGG 0.224059 1:+6570658 None:intergenic
AATCTGTCTTCAAGTTAATA+AGG 0.251956 1:+6572965 None:intergenic
CATCCAAGGAGAACATAATT+TGG 0.267826 1:-6571167 MsG0180000475.01.T01:CDS
CACTTAAGTAGTGTTCTTCT+TGG 0.277300 1:+6572404 None:intergenic
ACTGAAACTGATTCAAATAT+TGG 0.283455 1:-6573693 MsG0180000475.01.T01:CDS
CACTTTGGGAACATGATATC+AGG 0.285981 1:+6570578 None:intergenic
ATCCGACACAATATGCTTAA+TGG 0.290782 1:+6571631 None:intergenic
TAGTGGTAACCGACAAGTTT+GGG 0.293001 1:-6570801 MsG0180000475.01.T01:CDS
AGAACCTGGTCTGGTGGATT+TGG 0.298861 1:-6571950 MsG0180000475.01.T01:CDS
TTCACCAATCGAAGGTAATA+TGG 0.300524 1:+6571895 None:intergenic
TGATTTATGCTTCTGTTGTT+GGG 0.305019 1:-6573206 MsG0180000475.01.T01:CDS
TTGTGCGAGCCTCATCATTC+AGG 0.308272 1:-6571792 MsG0180000475.01.T01:CDS
AGGTTGGTTGGAAAAGCTTT+AGG 0.311083 1:-6573072 MsG0180000475.01.T01:CDS
TTGATTTATGCTTCTGTTGT+TGG 0.316516 1:-6573207 MsG0180000475.01.T01:CDS
CACCGAGTTTAGAAGAGTTA+TGG 0.322033 1:-6573131 MsG0180000475.01.T01:CDS
GTTAGTGAGGATCTGTTGAT+AGG 0.325620 1:-6573534 MsG0180000475.01.T01:CDS
TAATGTGGATGAGATTATTA+AGG 0.327179 1:-6572602 MsG0180000475.01.T01:CDS
ACTGGTTCATAATTTCTTAG+AGG 0.327756 1:+6570986 None:intergenic
GGCAGAAAGCGCAGTTATTT+GGG 0.332530 1:-6571049 MsG0180000475.01.T01:CDS
ACAAGAAATTGTCTTCAAAA+TGG 0.335837 1:-6573509 MsG0180000475.01.T01:CDS
TGCTCTGATATTGTTCACTT+TGG 0.340511 1:+6570563 None:intergenic
CACTGGATACCGTATGTTCT+AGG 0.342638 1:-6572540 MsG0180000475.01.T01:CDS
AAGACTAACAAGGAAGCTTC+TGG 0.343748 1:-6571605 MsG0180000475.01.T01:CDS
AATTGTCTTCAAAATGGAAT+TGG 0.344941 1:-6573503 MsG0180000475.01.T01:CDS
TGTTTCCCAATGTCATGTTC+AGG 0.348192 1:+6573180 None:intergenic
TTATGGGGTGATAAAAGTTC+AGG 0.358120 1:-6573114 MsG0180000475.01.T01:CDS
AAGGATGATTTAATGAGATT+TGG 0.360201 1:-6573012 MsG0180000475.01.T01:CDS
CGGCGATCTTGATGGTTTGA+TGG 0.364842 1:-6571236 MsG0180000475.01.T01:CDS
AATCCACCAGACCAGGTTCT+TGG 0.366360 1:+6571953 None:intergenic
TCTTCATCGGATATTTCAAT+TGG 0.366592 1:+6571923 None:intergenic
TGAGATTTGGTGCTAGTAAT+GGG 0.369936 1:-6572999 MsG0180000475.01.T01:CDS
GCTCTGATATTGTTCACTTT+GGG 0.375696 1:+6570564 None:intergenic
ACCGAGTTTAGAAGAGTTAT+GGG 0.379141 1:-6573130 MsG0180000475.01.T01:CDS
AATGAAGCAGTGATGAATTC+TGG 0.379585 1:-6572853 MsG0180000475.01.T01:CDS
TATGGTGGTCGTGTGGGGTC+TGG 0.381978 1:-6573261 MsG0180000475.01.T01:CDS
AACTGAATCCTCAATCTTCA+TGG 0.382045 1:+6572450 None:intergenic
AATGCGAATGAGGAGGGATT+GGG 0.384507 1:-6572175 MsG0180000475.01.T01:CDS
GAAAATGAGGCTCTAGCTTC+AGG 0.387737 1:-6572217 MsG0180000475.01.T01:CDS
CAATGGTTGAGACTTGATTC+TGG 0.388547 1:-6571193 MsG0180000475.01.T01:CDS
CCTTCGATTGGTGAAGGGCT+TGG 0.388984 1:-6571887 MsG0180000475.01.T01:CDS
ATCAAGGAGATTCATCTTGC+CGG 0.392859 1:-6570839 MsG0180000475.01.T01:CDS
TATAATGATGGGTTGGGAAA+TGG 0.395465 1:-6571094 MsG0180000475.01.T01:CDS
CTTCATGTTCATTCGATTGA+GGG 0.396628 1:-6573420 MsG0180000475.01.T01:CDS
AAAATTTGTTAAAACTTTCA+AGG 0.399716 1:+6573473 None:intergenic
AAGAGTTGACATAAATGAAA+TGG 0.402011 1:-6570930 MsG0180000475.01.T01:CDS
GTGATAAAAGTTCAGGGAAA+TGG 0.403771 1:-6573107 MsG0180000475.01.T01:CDS
TCAATCTTGTTAATAGTCAT+AGG 0.404954 1:+6571340 None:intergenic
CTTTGAGTTTCAACGGCGTT+AGG 0.406750 1:-6573392 MsG0180000475.01.T01:CDS
GCTAGATTAAATGTTAGTTT+CGG 0.410989 1:-6573048 MsG0180000475.01.T01:CDS
ACTGCGTCTCAGCAACAATC+CGG 0.412720 1:-6570776 MsG0180000475.01.T01:CDS
TTTAAGACAGTTTGAAAATG+AGG 0.413809 1:-6572230 MsG0180000475.01.T01:CDS
TGATAAATTAATGCAACAAT+GGG 0.414227 1:-6572005 MsG0180000475.01.T01:CDS
ATCACAGAATTATATAATGA+TGG 0.420774 1:-6571106 MsG0180000475.01.T01:CDS
ATAGTGGTAACCGACAAGTT+TGG 0.426492 1:-6570802 MsG0180000475.01.T01:CDS
GACCTGTCCGTCAAGGGTAT+TGG 0.432762 1:-6573331 MsG0180000475.01.T01:CDS
TAATGCGAATGAGGAGGGAT+TGG 0.434699 1:-6572176 MsG0180000475.01.T01:CDS
ATTGATAAGGTGAAAATAGA+TGG 0.436857 1:-6571070 MsG0180000475.01.T01:CDS
AACTTTGGTACATAGATGTT+CGG 0.436998 1:-6573286 MsG0180000475.01.T01:CDS
GGTTAAGTGTGCATTGGAAA+AGG 0.437103 1:-6573371 MsG0180000475.01.T01:CDS
CTAAAACAAGCAACATTGTC+GGG 0.437682 1:+6572934 None:intergenic
ACCAGCATTGGAACTCCAAC+TGG 0.438461 1:+6570968 None:intergenic
GTTCCAAATTATGTTCTCCT+TGG 0.441194 1:+6571164 None:intergenic
TTCTTAGAGGATCTCTGTGC+TGG 0.444411 1:+6570999 None:intergenic
ATGAGATTTGGTGCTAGTAA+TGG 0.445911 1:-6573000 MsG0180000475.01.T01:CDS
CCTTCATGTTCATTCGATTG+AGG 0.448294 1:-6573421 MsG0180000475.01.T01:CDS
TTCTACCCCTTGTTCACTGA+TGG 0.449718 1:+6572699 None:intergenic
TCGTTCGAATTTGATCAAAC+AGG 0.452174 1:-6572661 MsG0180000475.01.T01:CDS
GAGATCAACGGCGATCTTGA+TGG 0.453525 1:-6571244 MsG0180000475.01.T01:CDS
TAGAGACTAATGCACACATT+AGG 0.459516 1:-6570604 MsG0180000475.01.T01:CDS
TGCGGAGTTTGATGAAACTT+TGG 0.460701 1:-6573301 MsG0180000475.01.T01:CDS
TAGGAATGTGAATGTGGATA+TGG 0.460785 1:-6572521 MsG0180000475.01.T01:CDS
TCTGTTTCAGGAAGGGATCA+TGG 0.464848 1:-6571450 MsG0180000475.01.T01:intron
TCGGTTTATGGTGGTCGTGT+GGG 0.467433 1:-6573267 MsG0180000475.01.T01:CDS
AATTCTCCAAGAACCTGGTC+TGG 0.470655 1:-6571959 MsG0180000475.01.T01:CDS
AGATAGTAGAAGGCTTAAAA+GGG 0.471114 1:+6573610 None:intergenic
GAATTATATAATGATGGGTT+GGG 0.472771 1:-6571100 MsG0180000475.01.T01:CDS
TTAGTGAGGATCTGTTGATA+GGG 0.474296 1:-6573533 MsG0180000475.01.T01:CDS
TTTCTTAAAGACGCTGGCAT+TGG 0.474864 1:-6572311 MsG0180000475.01.T01:CDS
TTTCGGTTATCAAGTAATGA+AGG 0.475758 1:-6573031 MsG0180000475.01.T01:CDS
AGAATTATATAATGATGGGT+TGG 0.478189 1:-6571101 MsG0180000475.01.T01:CDS
TGTCGGTAACGTTGGATCAA+TGG 0.480373 1:-6571210 MsG0180000475.01.T01:CDS
AGATCCTCACTAACAAATCT+CGG 0.484333 1:+6573543 None:intergenic
GTCCAATACCCTTGACGGAC+AGG 0.486403 1:+6573329 None:intergenic
TTCGGTTTATGGTGGTCGTG+TGG 0.488293 1:-6573268 MsG0180000475.01.T01:CDS
TTGAAAATTCTCCAAGAACC+TGG 0.492352 1:-6571964 MsG0180000475.01.T01:CDS
AATTATTGGTGCCGCGGAAG+AGG 0.495603 1:-6572095 MsG0180000475.01.T01:CDS
CTGATAAATTAATGCAACAA+TGG 0.498084 1:-6572006 MsG0180000475.01.T01:CDS
GATTTATGCTTCTGTTGTTG+GGG 0.498131 1:-6573205 MsG0180000475.01.T01:CDS
AACAGATAAAGACAAATGCT+TGG 0.500593 1:-6571389 MsG0180000475.01.T01:CDS
AGCATAAATCAAGAATCGCT+TGG 0.502217 1:+6573218 None:intergenic
TCAATCTAGATTCAAAATCA+AGG 0.504472 1:-6570855 MsG0180000475.01.T01:CDS
ACCAGTTGGAGTTCCAATGC+TGG 0.507271 1:-6570969 MsG0180000475.01.T01:CDS
GGGAACCTGAACATGACATT+GGG 0.508776 1:-6573185 MsG0180000475.01.T01:CDS
GCCTGAGCTAAAACCAGCAT+TGG 0.509744 1:+6570956 None:intergenic
ATTAAGCAAAGCTCTATACT+TGG 0.509999 1:-6573640 MsG0180000475.01.T01:CDS
AACAATGGGGTTTAGATGAG+AGG 0.511115 1:-6571991 MsG0180000475.01.T01:CDS
GTCAAGAAACTCTGACGTCT+CGG 0.513109 1:+6572426 None:intergenic
TAATTCAGCACGGGCAGACT+CGG 0.515926 1:-6572770 MsG0180000475.01.T01:CDS
CCCCATAACTCTTCTAAACT+CGG 0.519304 1:+6573129 None:intergenic
ATCAATCATTAATGCAGAGA+AGG 0.520043 1:-6572057 MsG0180000475.01.T01:CDS
AAATTTGTTAAAACTTTCAA+GGG 0.523046 1:+6573474 None:intergenic
ACGCAGTGCCCCAAACTTGT+CGG 0.527140 1:+6570792 None:intergenic
ATGCCTTTGCTAGATATCAC+TGG 0.527711 1:-6571659 MsG0180000475.01.T01:CDS
AGCAACAATCCGGGTTGCGT+TGG 0.533759 1:-6570766 MsG0180000475.01.T01:CDS
TTATCTGTTAAATAACTACA+TGG 0.535658 1:+6571403 None:intergenic
ATAGGGATGTCGTAAAGCTT+CGG 0.535896 1:-6572903 MsG0180000475.01.T01:CDS
GACAGTATTACACATGCCAC+TGG 0.538186 1:+6570736 None:intergenic
TCACAGAATTATATAATGAT+GGG 0.538575 1:-6571105 MsG0180000475.01.T01:CDS
ACATGACATTGGGAAACATC+AGG 0.539471 1:-6573175 MsG0180000475.01.T01:CDS
ACTTCCAAATCCACCAGACC+AGG 0.539639 1:+6571946 None:intergenic
ATATTACCTTCGATTGGTGA+AGG 0.540843 1:-6571893 MsG0180000475.01.T01:CDS
GCAGTGATGAATTCTGGCTC+AGG 0.540966 1:-6572847 MsG0180000475.01.T01:CDS
CCATCCATATTACCTTCGAT+TGG 0.541584 1:-6571899 MsG0180000475.01.T01:CDS
TAACGCAAGATGTGATTCAC+TGG 0.542746 1:-6572557 MsG0180000475.01.T01:CDS
CTAAGAAATTATGAACCAGT+TGG 0.543091 1:-6570983 MsG0180000475.01.T01:CDS
TGTCTTAAAAGCTTCTCTCT+AGG 0.544252 1:+6572244 None:intergenic
GATCCGTCCAATACCCTTGA+CGG 0.544712 1:+6573324 None:intergenic
GATCCTCACTAACAAATCTC+GGG 0.545482 1:+6573544 None:intergenic
TCTACCATCCATGAAGATTG+AGG 0.546459 1:-6572458 MsG0180000475.01.T01:CDS
GAGTATCAAAATAAAGATGT+TGG 0.547317 1:-6573720 MsG0180000475.01.T01:CDS
TGTTGAATCAAGATATCTTG+TGG 0.547330 1:-6570652 MsG0180000475.01.T01:CDS
TCATTTCGCTCAAGCTGTGA+CGG 0.549382 1:-6572280 MsG0180000475.01.T01:CDS
TCTCCAAGAACCTGGTCTGG+TGG 0.549400 1:-6571956 MsG0180000475.01.T01:CDS
ACTAAAACAAGCAACATTGT+CGG 0.549458 1:+6572933 None:intergenic
GATGGATCTGTCGGTAACGT+TGG 0.550521 1:-6571218 MsG0180000475.01.T01:CDS
TACACTTGAACATAACTATG+AGG 0.551566 1:-6572146 MsG0180000475.01.T01:CDS
AAGCTTCTCTCTAGGAGACA+TGG 0.552937 1:+6572252 None:intergenic
ATTCTTAGCATTTCTGAAGA+GGG 0.553950 1:+6571814 None:intergenic
GTCTAGCATGTCAAATGAAG+AGG 0.553980 1:-6571287 MsG0180000475.01.T01:CDS
GCGTTAGGTTAAGTGTGCAT+TGG 0.554281 1:-6573377 MsG0180000475.01.T01:CDS
TTGCGTTGGTTGCTTTCCAG+TGG 0.555258 1:-6570752 MsG0180000475.01.T01:CDS
GTTGGGAAATGGCATTGATA+AGG 0.555472 1:-6571083 MsG0180000475.01.T01:CDS
CCTATATCAAAAGCTTGATG+AGG 0.555755 1:-6572803 MsG0180000475.01.T01:CDS
CTATATCAAAAGCTTGATGA+GGG 0.556939 1:-6572802 MsG0180000475.01.T01:CDS
CGGTTTATGGTGGTCGTGTG+GGG 0.557642 1:-6573266 MsG0180000475.01.T01:CDS
CTTGATTCTGGCATCATCCA+AGG 0.557881 1:-6571181 MsG0180000475.01.T01:CDS
AATTCTTAGCATTTCTGAAG+AGG 0.558323 1:+6571813 None:intergenic
GGACTGCCTTTGAGTTTCAA+CGG 0.559794 1:-6573399 MsG0180000475.01.T01:CDS
TTAGCATTTCTGAAGAGGGA+AGG 0.560033 1:+6571818 None:intergenic
CCGCGGAAGAGGAGTATGAA+AGG 0.563504 1:-6572084 MsG0180000475.01.T01:CDS
CGCGGAAGAGGAGTATGAAA+GGG 0.564447 1:-6572083 MsG0180000475.01.T01:CDS
CTGCGTCTCAGCAACAATCC+GGG 0.564997 1:-6570775 MsG0180000475.01.T01:CDS
CACATTAATGATTTCAACTG+TGG 0.565922 1:+6572618 None:intergenic
ATCTTTAATTATTGGTGCCG+CGG 0.568539 1:-6572101 MsG0180000475.01.T01:CDS
AGCTTCTCTCTAGGAGACAT+GGG 0.568860 1:+6572253 None:intergenic
TAATATGGATGGTTCTTCAT+CGG 0.571663 1:+6571910 None:intergenic
TTTGCAGACCTGTCCGTCAA+GGG 0.574356 1:-6573337 MsG0180000475.01.T01:CDS
TATTACCTTCGATTGGTGAA+GGG 0.575420 1:-6571892 MsG0180000475.01.T01:CDS
ATTCACATTCCTAGAACATA+CGG 0.576528 1:+6572531 None:intergenic
GGGGAACCTGAACATGACAT+TGG 0.579850 1:-6573186 MsG0180000475.01.T01:CDS
TATGGGGTGATAAAAGTTCA+GGG 0.580001 1:-6573113 MsG0180000475.01.T01:CDS
ATCATTAATGCAGAGAAGGA+AGG 0.585207 1:-6572053 MsG0180000475.01.T01:CDS
ATCCATTAAGCATATTGTGT+CGG 0.586015 1:-6571633 MsG0180000475.01.T01:CDS
CCAATCGAAGGTAATATGGA+TGG 0.586358 1:+6571899 None:intergenic
TCTGAAGAGGGAAGGACACA+TGG 0.586443 1:+6571826 None:intergenic
ATGCGAATGAGGAGGGATTG+GGG 0.589104 1:-6572174 MsG0180000475.01.T01:CDS
ATTGGATATACTTCTGTACA+TGG 0.591836 1:-6571726 MsG0180000475.01.T01:CDS
GGAAAGCAACCAACGCAACC+CGG 0.594488 1:+6570757 None:intergenic
GAATCCTCAATCTTCATGGA+TGG 0.594679 1:+6572454 None:intergenic
CATAGATGTTCGGTTTATGG+TGG 0.601478 1:-6573276 MsG0180000475.01.T01:CDS
CCTCAATCGAATGAACATGA+AGG 0.604269 1:+6573421 None:intergenic
GAACTTCAATAATTCAGCAC+GGG 0.606552 1:-6572779 MsG0180000475.01.T01:CDS
GAGGCACCATCATGCATTCG+TGG 0.607479 1:-6571268 MsG0180000475.01.T01:CDS
ACAATGGGGTTTAGATGAGA+GGG 0.609250 1:-6571990 MsG0180000475.01.T01:CDS
AGGGGTAGAAACATCAGAAG+AGG 0.609985 1:-6572686 MsG0180000475.01.T01:CDS
CTAACGCCGTTGAAACTCAA+AGG 0.611796 1:+6573393 None:intergenic
ATCTCTCCACGAATGCATGA+TGG 0.612265 1:+6571262 None:intergenic
CACAGTTGAAATCATTAATG+TGG 0.613849 1:-6572617 MsG0180000475.01.T01:CDS
TGATGGTTTGATGGATCTGT+CGG 0.614324 1:-6571227 MsG0180000475.01.T01:CDS
TAGTGAGGATCTGTTGATAG+GGG 0.625054 1:-6573532 MsG0180000475.01.T01:CDS
GATTAGAAGCCTGAATGATG+AGG 0.627712 1:+6571783 None:intergenic
ATGACATCATCCAAGCTATG+TGG 0.628164 1:+6572352 None:intergenic
AAGGGTATTGGACGGATCTG+CGG 0.628469 1:-6573319 MsG0180000475.01.T01:CDS
GCAGACTCGGAGTCATCTCA+AGG 0.629555 1:-6572757 MsG0180000475.01.T01:CDS
CTAACAAGGAAGCTTCTGGA+AGG 0.630482 1:-6571601 MsG0180000475.01.T01:intron
GATAGTAGAAGGCTTAAAAG+GGG 0.633999 1:+6573611 None:intergenic
CCAAGCCCTTCACCAATCGA+AGG 0.641764 1:+6571887 None:intergenic
GAGTGATTTCTTAAAGACGC+TGG 0.643107 1:-6572317 MsG0180000475.01.T01:CDS
TTTCCAGTGATATCTAGCAA+AGG 0.643248 1:+6571656 None:intergenic
GGAACTTCAATAATTCAGCA+CGG 0.650508 1:-6572780 MsG0180000475.01.T01:CDS
TCGTTTGTTCAAACTACGAG+CGG 0.651591 1:-6571863 MsG0180000475.01.T01:CDS
TTTGTTCAAACTACGAGCGG+AGG 0.651959 1:-6571860 MsG0180000475.01.T01:CDS
AACACCACGTCATTCTGAGT+CGG 0.655925 1:+6572880 None:intergenic
TGCATTCGTGGAGAGATCAA+CGG 0.658580 1:-6571256 MsG0180000475.01.T01:CDS
CCTTTCATACTCCTCTTCCG+CGG 0.659309 1:+6572084 None:intergenic
AACATCAGGTTGATCTCACT+AGG 0.663911 1:-6573161 MsG0180000475.01.T01:CDS
AAACCCGAGATTTGTTAGTG+AGG 0.665396 1:-6573547 MsG0180000475.01.T01:CDS
ATGTTCTAGGAATGTGAATG+TGG 0.669689 1:-6572527 MsG0180000475.01.T01:CDS
TTTGGGAGAGCACATAACAG+TGG 0.673391 1:-6571032 MsG0180000475.01.T01:CDS
TGTCCGTCAAGGGTATTGGA+CGG 0.677453 1:-6573327 MsG0180000475.01.T01:CDS
CCGAGTTTAGAAGAGTTATG+GGG 0.678831 1:-6573129 MsG0180000475.01.T01:CDS
AGTGGTAACCGACAAGTTTG+GGG 0.681795 1:-6570800 MsG0180000475.01.T01:CDS
TAAAACAAGCAACATTGTCG+GGG 0.684076 1:+6572935 None:intergenic
TATATCAAAAGCTTGATGAG+GGG 0.686474 1:-6572801 MsG0180000475.01.T01:CDS
GATAAATTAATGCAACAATG+GGG 0.695430 1:-6572004 MsG0180000475.01.T01:CDS
GTCGGATGCTAAGACTAACA+AGG 0.709457 1:-6571615 MsG0180000475.01.T01:CDS
TAACTATGAGGATTATGACG+TGG 0.723957 1:-6572134 MsG0180000475.01.T01:CDS
CATAACTCTTCTAAACTCGG+TGG 0.734783 1:+6573132 None:intergenic
TCGGCCGACTCAGAATGACG+TGG 0.772807 1:-6572884 MsG0180000475.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTGATTTATCTTTAATTAT+TGG - Chr1:6572209-6572228 MsG0180000475.01.T01:CDS 15.0%
!!! AAAATTTGTTAAAACTTTCA+AGG + Chr1:6570848-6570867 None:intergenic 15.0%
!!! AAATTTGTTAAAACTTTCAA+GGG + Chr1:6570847-6570866 None:intergenic 15.0%
!!! TTGAAAGTTTTAACAAATTT+TGG - Chr1:6570847-6570866 MsG0180000475.01.T01:CDS 15.0%
!! AAAAATAGGTAACGATATAT+TGG - Chr1:6572574-6572593 MsG0180000475.01.T01:CDS 20.0%
!! ATCACAGAATTATATAATGA+TGG - Chr1:6573212-6573231 MsG0180000475.01.T01:CDS 20.0%
!! TCACAGAATTATATAATGAT+GGG - Chr1:6573213-6573232 MsG0180000475.01.T01:CDS 20.0%
!! TGATAAATTAATGCAACAAT+GGG - Chr1:6572313-6572332 MsG0180000475.01.T01:CDS 20.0%
!! TTATCTGTTAAATAACTACA+TGG + Chr1:6572918-6572937 None:intergenic 20.0%
!!! ATTGAATCTCTTTTAATAGA+AGG - Chr1:6572996-6573015 MsG0180000475.01.T01:CDS 20.0%
!!! TTATTTTGATACTCAAAGTT+TGG + Chr1:6570592-6570611 None:intergenic 20.0%
!!! TTGAATCTCTTTTAATAGAA+GGG - Chr1:6572997-6573016 MsG0180000475.01.T01:CDS 20.0%
!!! TTGTTTTAGTTCTAACAATA+GGG - Chr1:6571398-6571417 MsG0180000475.01.T01:CDS 20.0%
! AAGAGTTGACATAAATGAAA+TGG - Chr1:6573388-6573407 MsG0180000475.01.T01:CDS 25.0%
! AAGGATGATTTAATGAGATT+TGG - Chr1:6571306-6571325 MsG0180000475.01.T01:CDS 25.0%
! AATTGTCTTCAAAATGGAAT+TGG - Chr1:6570815-6570834 MsG0180000475.01.T01:CDS 25.0%
! ACAAGAAATTGTCTTCAAAA+TGG - Chr1:6570809-6570828 MsG0180000475.01.T01:CDS 25.0%
! ACAGAAATAAATCAAATGCT+TGG + Chr1:6572827-6572846 None:intergenic 25.0%
! ATTGATAAGGTGAAAATAGA+TGG - Chr1:6573248-6573267 MsG0180000475.01.T01:CDS 25.0%
! CTGATAAATTAATGCAACAA+TGG - Chr1:6572312-6572331 MsG0180000475.01.T01:CDS 25.0%
! GAGTATCAAAATAAAGATGT+TGG - Chr1:6570598-6570617 MsG0180000475.01.T01:CDS 25.0%
! GATAAATTAATGCAACAATG+GGG - Chr1:6572314-6572333 MsG0180000475.01.T01:CDS 25.0%
! GATATCTTGATTCAACAATT+TGG + Chr1:6573663-6573682 None:intergenic 25.0%
! TAATGTGGATGAGATTATTA+AGG - Chr1:6571716-6571735 MsG0180000475.01.T01:CDS 25.0%
! TCAAATGCTTGGAATAAAAA+AGG + Chr1:6572816-6572835 None:intergenic 25.0%
! TCAATCTAGATTCAAAATCA+AGG - Chr1:6573463-6573482 MsG0180000475.01.T01:CDS 25.0%
! TCAATCTTGTTAATAGTCAT+AGG + Chr1:6572981-6573000 None:intergenic 25.0%
!! AATCTGTCTTCAAGTTAATA+AGG + Chr1:6571356-6571375 None:intergenic 25.0%
!! ACTGAAACTGATTCAAATAT+TGG - Chr1:6570625-6570644 MsG0180000475.01.T01:CDS 25.0%
!! GCTAGATTAAATGTTAGTTT+CGG - Chr1:6571270-6571289 MsG0180000475.01.T01:CDS 25.0%
!! TTGATTTTGAATCTAGATTG+AGG + Chr1:6573464-6573483 None:intergenic 25.0%
!! TTTAAGACAGTTTGAAAATG+AGG - Chr1:6572088-6572107 MsG0180000475.01.T01:CDS 25.0%
!!! AATTTTGGTTCACAAAAGTT+TGG - Chr1:6570862-6570881 MsG0180000475.01.T01:CDS 25.0%
!!! AGAATTATATAATGATGGGT+TGG - Chr1:6573217-6573236 MsG0180000475.01.T01:CDS 25.0%
!!! CTTGTTTTAGTTCTAACAAT+AGG - Chr1:6571397-6571416 MsG0180000475.01.T01:CDS 25.0%
!!! GAATTATATAATGATGGGTT+GGG - Chr1:6573218-6573237 MsG0180000475.01.T01:CDS 25.0%
!!! TAAGTTGAGATTTTGACAAA+CGG + Chr1:6570747-6570766 None:intergenic 25.0%
!!! TTTTGATTTTAATGCGAATG+AGG - Chr1:6572133-6572152 MsG0180000475.01.T01:CDS 25.0%
AACAGATAAAGACAAATGCT+TGG - Chr1:6572929-6572948 MsG0180000475.01.T01:CDS 30.0%
AACTTTGGTACATAGATGTT+CGG - Chr1:6571032-6571051 MsG0180000475.01.T01:CDS 30.0%
ACTAAAACAAGCAACATTGT+CGG + Chr1:6571388-6571407 None:intergenic 30.0%
AGATAGTAGAAGGCTTAAAA+GGG + Chr1:6570711-6570730 None:intergenic 30.0%
ATCAATCATTAATGCAGAGA+AGG - Chr1:6572261-6572280 MsG0180000475.01.T01:CDS 30.0%
ATCCATTAAGCATATTGTGT+CGG - Chr1:6572685-6572704 MsG0180000475.01.T01:CDS 30.0%
ATTAAGCAAAGCTCTATACT+TGG - Chr1:6570678-6570697 MsG0180000475.01.T01:CDS 30.0%
ATTCACATTCCTAGAACATA+CGG + Chr1:6571790-6571809 None:intergenic 30.0%
ATTGGATATACTTCTGTACA+TGG - Chr1:6572592-6572611 MsG0180000475.01.T01:CDS 30.0%
CACAGTTGAAATCATTAATG+TGG - Chr1:6571701-6571720 MsG0180000475.01.T01:CDS 30.0%
CACATTAATGATTTCAACTG+TGG + Chr1:6571703-6571722 None:intergenic 30.0%
CTAAGAAATTATGAACCAGT+TGG - Chr1:6573335-6573354 MsG0180000475.01.T01:CDS 30.0%
CTATATCAAAAGCTTGATGA+GGG - Chr1:6571516-6571535 MsG0180000475.01.T01:intron 30.0%
GAATAATTCTGTTTCAGGAA+GGG - Chr1:6572861-6572880 MsG0180000475.01.T01:CDS 30.0%
TAATATGGATGGTTCTTCAT+CGG + Chr1:6572411-6572430 None:intergenic 30.0%
TACACTTGAACATAACTATG+AGG - Chr1:6572172-6572191 MsG0180000475.01.T01:CDS 30.0%
TATATCAAAAGCTTGATGAG+GGG - Chr1:6571517-6571536 MsG0180000475.01.T01:intron 30.0%
TCCATGAATAATTCTGTTTC+AGG - Chr1:6572856-6572875 MsG0180000475.01.T01:CDS 30.0%
TCCTGAAACAGAATTATTCA+TGG + Chr1:6572860-6572879 None:intergenic 30.0%
TCTTCATCGGATATTTCAAT+TGG + Chr1:6572398-6572417 None:intergenic 30.0%
TGAATAATTCTGTTTCAGGA+AGG - Chr1:6572860-6572879 MsG0180000475.01.T01:CDS 30.0%
TGATTTATGCTTCTGTTGTT+GGG - Chr1:6571112-6571131 MsG0180000475.01.T01:CDS 30.0%
TGTTGAATCAAGATATCTTG+TGG - Chr1:6573666-6573685 MsG0180000475.01.T01:CDS 30.0%
TTGATTTATGCTTCTGTTGT+TGG - Chr1:6571111-6571130 MsG0180000475.01.T01:CDS 30.0%
TTTCGGTTATCAAGTAATGA+AGG - Chr1:6571287-6571306 MsG0180000475.01.T01:CDS 30.0%
! AATTCTTAGCATTTCTGAAG+AGG + Chr1:6572508-6572527 None:intergenic 30.0%
! AATTTTCCATCAGTGAACAA+GGG - Chr1:6571613-6571632 MsG0180000475.01.T01:CDS 30.0%
! ACTGGTTCATAATTTCTTAG+AGG + Chr1:6573335-6573354 None:intergenic 30.0%
! ATTCTTAGCATTTCTGAAGA+GGG + Chr1:6572507-6572526 None:intergenic 30.0%
! ATTTTGAATCTAGATTGAGG+TGG + Chr1:6573461-6573480 None:intergenic 30.0%
! CTCAAGATCTTCAAGAATTT+TGG + Chr1:6572291-6572310 None:intergenic 30.0%
!! AAGTTGAGATTTTGACAAAC+GGG + Chr1:6570746-6570765 None:intergenic 30.0%
!!! ACTATTTTTTGTAAGGACAC+CGG + Chr1:6573501-6573520 None:intergenic 30.0%
!!! ATATCGTTACCTATTTTTGC+AGG + Chr1:6572572-6572591 None:intergenic 30.0%
!!! GGTTACCACTATTTTTTGTA+AGG + Chr1:6573508-6573527 None:intergenic 30.0%
AACTGAATCCTCAATCTTCA+TGG + Chr1:6571871-6571890 None:intergenic 35.0%
AATGAAGCAGTGATGAATTC+TGG - Chr1:6571465-6571484 MsG0180000475.01.T01:intron 35.0%
ACATAAAAAGCCACATAGCT+TGG - Chr1:6571956-6571975 MsG0180000475.01.T01:CDS 35.0%
ACCGAGTTTAGAAGAGTTAT+GGG - Chr1:6571188-6571207 MsG0180000475.01.T01:CDS 35.0%
AGATCCTCACTAACAAATCT+CGG + Chr1:6570778-6570797 None:intergenic 35.0%
AGCATAAATCAAGAATCGCT+TGG + Chr1:6571103-6571122 None:intergenic 35.0%
ATATTACCTTCGATTGGTGA+AGG - Chr1:6572425-6572444 MsG0180000475.01.T01:CDS 35.0%
ATCATTAATGCAGAGAAGGA+AGG - Chr1:6572265-6572284 MsG0180000475.01.T01:CDS 35.0%
ATCCGACACAATATGCTTAA+TGG + Chr1:6572690-6572709 None:intergenic 35.0%
CACTTAAGTAGTGTTCTTCT+TGG + Chr1:6571917-6571936 None:intergenic 35.0%
CATCCAAGGAGAACATAATT+TGG - Chr1:6573151-6573170 MsG0180000475.01.T01:CDS 35.0%
CCTATATCAAAAGCTTGATG+AGG - Chr1:6571515-6571534 MsG0180000475.01.T01:intron 35.0%
CTAAAACAAGCAACATTGTC+GGG + Chr1:6571387-6571406 None:intergenic 35.0%
CTTCATGTTCATTCGATTGA+GGG - Chr1:6570898-6570917 MsG0180000475.01.T01:CDS 35.0%
GAACTTCAATAATTCAGCAC+GGG - Chr1:6571539-6571558 MsG0180000475.01.T01:intron 35.0%
GAGATAGTAGAAGGCTTAAA+AGG + Chr1:6570712-6570731 None:intergenic 35.0%
GATAGTAGAAGGCTTAAAAG+GGG + Chr1:6570710-6570729 None:intergenic 35.0%
GATTTATGCTTCTGTTGTTG+GGG - Chr1:6571113-6571132 MsG0180000475.01.T01:CDS 35.0%
GGAACTTCAATAATTCAGCA+CGG - Chr1:6571538-6571557 MsG0180000475.01.T01:intron 35.0%
GGTGTCCTTACAAAAAATAG+TGG - Chr1:6573500-6573519 MsG0180000475.01.T01:CDS 35.0%
GTACATAGATGTTCGGTTTA+TGG - Chr1:6571039-6571058 MsG0180000475.01.T01:CDS 35.0%
GTGATAAAAGTTCAGGGAAA+TGG - Chr1:6571211-6571230 MsG0180000475.01.T01:CDS 35.0%
GTTCCAAATTATGTTCTCCT+TGG + Chr1:6573157-6573176 None:intergenic 35.0%
TAAAACAAGCAACATTGTCG+GGG + Chr1:6571386-6571405 None:intergenic 35.0%
TAACTATGAGGATTATGACG+TGG - Chr1:6572184-6572203 MsG0180000475.01.T01:CDS 35.0%
TAGAGACTAATGCACACATT+AGG - Chr1:6573714-6573733 MsG0180000475.01.T01:CDS 35.0%
TAGGAATGTGAATGTGGATA+TGG - Chr1:6571797-6571816 MsG0180000475.01.T01:CDS 35.0%
TATGGGGTGATAAAAGTTCA+GGG - Chr1:6571205-6571224 MsG0180000475.01.T01:CDS 35.0%
TATTACCTTCGATTGGTGAA+GGG - Chr1:6572426-6572445 MsG0180000475.01.T01:CDS 35.0%
TCGTTCGAATTTGATCAAAC+AGG - Chr1:6571657-6571676 MsG0180000475.01.T01:CDS 35.0%
TGTCTTAAAAGCTTCTCTCT+AGG + Chr1:6572077-6572096 None:intergenic 35.0%
TTAGTGAGGATCTGTTGATA+GGG - Chr1:6570785-6570804 MsG0180000475.01.T01:CDS 35.0%
TTATGGGGTGATAAAAGTTC+AGG - Chr1:6571204-6571223 MsG0180000475.01.T01:CDS 35.0%
TTCACCAATCGAAGGTAATA+TGG + Chr1:6572426-6572445 None:intergenic 35.0%
TTGAAAATTCTCCAAGAACC+TGG - Chr1:6572354-6572373 MsG0180000475.01.T01:CDS 35.0%
TTTCCAGTGATATCTAGCAA+AGG + Chr1:6572665-6572684 None:intergenic 35.0%
! ATTTTCCATCAGTGAACAAG+GGG - Chr1:6571614-6571633 MsG0180000475.01.T01:CDS 35.0%
! CCTCATCAAGCTTTTGATAT+AGG + Chr1:6571518-6571537 None:intergenic 35.0%
! GAATTTTCCATCAGTGAACA+AGG - Chr1:6571612-6571631 MsG0180000475.01.T01:CDS 35.0%
! GGAAATGGAGTACAAGTTTT+AGG - Chr1:6571226-6571245 MsG0180000475.01.T01:CDS 35.0%
! TTTTCAGCAGAGATAGTAGA+AGG + Chr1:6570721-6570740 None:intergenic 35.0%
!! ATCTTTAATTATTGGTGCCG+CGG - Chr1:6572217-6572236 MsG0180000475.01.T01:CDS 35.0%
!! ATGAGATTTGGTGCTAGTAA+TGG - Chr1:6571318-6571337 MsG0180000475.01.T01:CDS 35.0%
!! ATGTTCTAGGAATGTGAATG+TGG - Chr1:6571791-6571810 MsG0180000475.01.T01:CDS 35.0%
!! GATTTTAATGCGAATGAGGA+GGG - Chr1:6572137-6572156 MsG0180000475.01.T01:CDS 35.0%
!! TATAATGATGGGTTGGGAAA+TGG - Chr1:6573224-6573243 MsG0180000475.01.T01:CDS 35.0%
!! TGAGATTTGGTGCTAGTAAT+GGG - Chr1:6571319-6571338 MsG0180000475.01.T01:CDS 35.0%
!! TGATTTTAATGCGAATGAGG+AGG - Chr1:6572136-6572155 MsG0180000475.01.T01:CDS 35.0%
!!! AGTACAAGTTTTAGGTTGGT+TGG - Chr1:6571234-6571253 MsG0180000475.01.T01:CDS 35.0%
!!! ATGGAGTACAAGTTTTAGGT+TGG - Chr1:6571230-6571249 MsG0180000475.01.T01:CDS 35.0%
AACAATGGGGTTTAGATGAG+AGG - Chr1:6572327-6572346 MsG0180000475.01.T01:CDS 40.0%
AAGACTAACAAGGAAGCTTC+TGG - Chr1:6572713-6572732 MsG0180000475.01.T01:CDS 40.0%
ACAATGGGGTTTAGATGAGA+GGG - Chr1:6572328-6572347 MsG0180000475.01.T01:CDS 40.0%
ACATGACATTGGGAAACATC+AGG - Chr1:6571143-6571162 MsG0180000475.01.T01:CDS 40.0%
ATAGGGATGTCGTAAAGCTT+CGG - Chr1:6571415-6571434 MsG0180000475.01.T01:CDS 40.0%
ATAGTGGTAACCGACAAGTT+TGG - Chr1:6573516-6573535 MsG0180000475.01.T01:CDS 40.0%
ATCAAGGAGATTCATCTTGC+CGG - Chr1:6573479-6573498 MsG0180000475.01.T01:CDS 40.0%
ATGACATCATCCAAGCTATG+TGG + Chr1:6571969-6571988 None:intergenic 40.0%
ATGCCTTTGCTAGATATCAC+TGG - Chr1:6572659-6572678 MsG0180000475.01.T01:CDS 40.0%
CAATGGTTGAGACTTGATTC+TGG - Chr1:6573125-6573144 MsG0180000475.01.T01:CDS 40.0%
CACCGAGTTTAGAAGAGTTA+TGG - Chr1:6571187-6571206 MsG0180000475.01.T01:CDS 40.0%
CATAACTCTTCTAAACTCGG+TGG + Chr1:6571189-6571208 None:intergenic 40.0%
CATAGATGTTCGGTTTATGG+TGG - Chr1:6571042-6571061 MsG0180000475.01.T01:CDS 40.0%
CCAATCGAAGGTAATATGGA+TGG + Chr1:6572422-6572441 None:intergenic 40.0%
CCATCCATATTACCTTCGAT+TGG - Chr1:6572419-6572438 MsG0180000475.01.T01:CDS 40.0%
CCCCATAACTCTTCTAAACT+CGG + Chr1:6571192-6571211 None:intergenic 40.0%
CCGAGTTTAGAAGAGTTATG+GGG - Chr1:6571189-6571208 MsG0180000475.01.T01:CDS 40.0%
CCTCAATCGAATGAACATGA+AGG + Chr1:6570900-6570919 None:intergenic 40.0%
CCTTCATGTTCATTCGATTG+AGG - Chr1:6570897-6570916 MsG0180000475.01.T01:CDS 40.0%
GAATCCTCAATCTTCATGGA+TGG + Chr1:6571867-6571886 None:intergenic 40.0%
GAGTGATTTCTTAAAGACGC+TGG - Chr1:6572001-6572020 MsG0180000475.01.T01:CDS 40.0%
GATCCTCACTAACAAATCTC+GGG + Chr1:6570777-6570796 None:intergenic 40.0%
GATTAGAAGCCTGAATGATG+AGG + Chr1:6572538-6572557 None:intergenic 40.0%
GGTTAAGTGTGCATTGGAAA+AGG - Chr1:6570947-6570966 MsG0180000475.01.T01:CDS 40.0%
GTCGTTCTACCTGCAAAAAT+AGG - Chr1:6572560-6572579 MsG0180000475.01.T01:CDS 40.0%
GTCTAGCATGTCAAATGAAG+AGG - Chr1:6573031-6573050 MsG0180000475.01.T01:CDS 40.0%
GTTAGTGAGGATCTGTTGAT+AGG - Chr1:6570784-6570803 MsG0180000475.01.T01:CDS 40.0%
TAACGCAAGATGTGATTCAC+TGG - Chr1:6571761-6571780 MsG0180000475.01.T01:CDS 40.0%
TAGTGGTAACCGACAAGTTT+GGG - Chr1:6573517-6573536 MsG0180000475.01.T01:CDS 40.0%
TCGTTTGTTCAAACTACGAG+CGG - Chr1:6572455-6572474 MsG0180000475.01.T01:CDS 40.0%
TCTACCATCCATGAAGATTG+AGG - Chr1:6571860-6571879 MsG0180000475.01.T01:CDS 40.0%
TGCGGAGTTTGATGAAACTT+TGG - Chr1:6571017-6571036 MsG0180000475.01.T01:CDS 40.0%
TGTTTCCCAATGTCATGTTC+AGG + Chr1:6571141-6571160 None:intergenic 40.0%
TTTCTTAAAGACGCTGGCAT+TGG - Chr1:6572007-6572026 MsG0180000475.01.T01:CDS 40.0%
! AGGTTGGTTGGAAAAGCTTT+AGG - Chr1:6571246-6571265 MsG0180000475.01.T01:CDS 40.0%
! ATTTTTGCAGGTAGAACGAC+TGG + Chr1:6572560-6572579 None:intergenic 40.0%
! CACTTTGGGAACATGATATC+AGG + Chr1:6573743-6573762 None:intergenic 40.0%
! TAGTGAGGATCTGTTGATAG+GGG - Chr1:6570786-6570805 MsG0180000475.01.T01:CDS 40.0%
! TGATGGTTTGATGGATCTGT+CGG - Chr1:6573091-6573110 MsG0180000475.01.T01:CDS 40.0%
! TTAGCATTTCTGAAGAGGGA+AGG + Chr1:6572503-6572522 None:intergenic 40.0%
!! AAACCCGAGATTTGTTAGTG+AGG - Chr1:6570771-6570790 MsG0180000475.01.T01:CDS 40.0%
!! AACATCAGGTTGATCTCACT+AGG - Chr1:6571157-6571176 MsG0180000475.01.T01:CDS 40.0%
!! GTTGGGAAATGGCATTGATA+AGG - Chr1:6573235-6573254 MsG0180000475.01.T01:CDS 40.0%
AACACCACGTCATTCTGAGT+CGG + Chr1:6571441-6571460 None:intergenic 45.0%
AATGCGAATGAGGAGGGATT+GGG - Chr1:6572143-6572162 MsG0180000475.01.T01:CDS 45.0%
AATTCTCCAAGAACCTGGTC+TGG - Chr1:6572359-6572378 MsG0180000475.01.T01:CDS 45.0%
AGGGGTAGAAACATCAGAAG+AGG - Chr1:6571632-6571651 MsG0180000475.01.T01:CDS 45.0%
AGTGGTAACCGACAAGTTTG+GGG - Chr1:6573518-6573537 MsG0180000475.01.T01:CDS 45.0%
ATCTCTCCACGAATGCATGA+TGG + Chr1:6573059-6573078 None:intergenic 45.0%
CACTGGATACCGTATGTTCT+AGG - Chr1:6571778-6571797 MsG0180000475.01.T01:CDS 45.0%
CTAACAAGGAAGCTTCTGGA+AGG - Chr1:6572717-6572736 MsG0180000475.01.T01:CDS 45.0%
CTAACGCCGTTGAAACTCAA+AGG + Chr1:6570928-6570947 None:intergenic 45.0%
CTTGATTCTGGCATCATCCA+AGG - Chr1:6573137-6573156 MsG0180000475.01.T01:CDS 45.0%
GACAGTATTACACATGCCAC+TGG + Chr1:6573585-6573604 None:intergenic 45.0%
GCGTTAGGTTAAGTGTGCAT+TGG - Chr1:6570941-6570960 MsG0180000475.01.T01:CDS 45.0%
GGGAACCTGAACATGACATT+GGG - Chr1:6571133-6571152 MsG0180000475.01.T01:CDS 45.0%
GTCAAGAAACTCTGACGTCT+CGG + Chr1:6571895-6571914 None:intergenic 45.0%
GTCGGATGCTAAGACTAACA+AGG - Chr1:6572703-6572722 MsG0180000475.01.T01:CDS 45.0%
TAATGCGAATGAGGAGGGAT+TGG - Chr1:6572142-6572161 MsG0180000475.01.T01:CDS 45.0%
TCATTTCGCTCAAGCTGTGA+CGG - Chr1:6572038-6572057 MsG0180000475.01.T01:CDS 45.0%
TCTGTTTCAGGAAGGGATCA+TGG - Chr1:6572868-6572887 MsG0180000475.01.T01:CDS 45.0%
TGCATTCGTGGAGAGATCAA+CGG - Chr1:6573062-6573081 MsG0180000475.01.T01:CDS 45.0%
TGTCGGTAACGTTGGATCAA+TGG - Chr1:6573108-6573127 MsG0180000475.01.T01:CDS 45.0%
TTCTACCCCTTGTTCACTGA+TGG + Chr1:6571622-6571641 None:intergenic 45.0%
TTCTTAGAGGATCTCTGTGC+TGG + Chr1:6573322-6573341 None:intergenic 45.0%
TTTGTTCAAACTACGAGCGG+AGG - Chr1:6572458-6572477 MsG0180000475.01.T01:CDS 45.0%
! AAGCTTCTCTCTAGGAGACA+TGG + Chr1:6572069-6572088 None:intergenic 45.0%
! AGCTTCTCTCTAGGAGACAT+GGG + Chr1:6572068-6572087 None:intergenic 45.0%
! CTTTGAGTTTCAACGGCGTT+AGG - Chr1:6570926-6570945 MsG0180000475.01.T01:CDS 45.0%
! GAAAATGAGGCTCTAGCTTC+AGG - Chr1:6572101-6572120 MsG0180000475.01.T01:CDS 45.0%
! GGACTGCCTTTGAGTTTCAA+CGG - Chr1:6570919-6570938 MsG0180000475.01.T01:CDS 45.0%
! GGCAGAAAGCGCAGTTATTT+GGG - Chr1:6573269-6573288 MsG0180000475.01.T01:CDS 45.0%
! TGGCAGAAAGCGCAGTTATT+TGG - Chr1:6573268-6573287 MsG0180000475.01.T01:CDS 45.0%
! TTTGGGAGAGCACATAACAG+TGG - Chr1:6573286-6573305 MsG0180000475.01.T01:CDS 45.0%
!!! TCCAATGCTGGTTTTAGCTC+AGG - Chr1:6573361-6573380 MsG0180000475.01.T01:CDS 45.0%
AATCCACCAGACCAGGTTCT+TGG + Chr1:6572368-6572387 None:intergenic 50.0%
ACCAGTTGGAGTTCCAATGC+TGG - Chr1:6573349-6573368 MsG0180000475.01.T01:CDS 50.0%
ACTGCGTCTCAGCAACAATC+CGG - Chr1:6573542-6573561 MsG0180000475.01.T01:CDS 50.0%
ACTTCCAAATCCACCAGACC+AGG + Chr1:6572375-6572394 None:intergenic 50.0%
ATGCGAATGAGGAGGGATTG+GGG - Chr1:6572144-6572163 MsG0180000475.01.T01:CDS 50.0%
CCTTTCATACTCCTCTTCCG+CGG + Chr1:6572237-6572256 None:intergenic 50.0%
GAGATCAACGGCGATCTTGA+TGG - Chr1:6573074-6573093 MsG0180000475.01.T01:CDS 50.0%
GATCCGTCCAATACCCTTGA+CGG + Chr1:6570997-6571016 None:intergenic 50.0%
GATGGATCTGTCGGTAACGT+TGG - Chr1:6573100-6573119 MsG0180000475.01.T01:CDS 50.0%
GCCTGAGCTAAAACCAGCAT+TGG + Chr1:6573365-6573384 None:intergenic 50.0%
GGGGAACCTGAACATGACAT+TGG - Chr1:6571132-6571151 MsG0180000475.01.T01:CDS 50.0%
TAATTCAGCACGGGCAGACT+CGG - Chr1:6571548-6571567 MsG0180000475.01.T01:intron 50.0%
TCGGTTTATGGTGGTCGTGT+GGG - Chr1:6571051-6571070 MsG0180000475.01.T01:CDS 50.0%
TCTGAAGAGGGAAGGACACA+TGG + Chr1:6572495-6572514 None:intergenic 50.0%
TTCGGTTTATGGTGGTCGTG+TGG - Chr1:6571050-6571069 MsG0180000475.01.T01:CDS 50.0%
TTGTGCGAGCCTCATCATTC+AGG - Chr1:6572526-6572545 MsG0180000475.01.T01:CDS 50.0%
TTTGCAGACCTGTCCGTCAA+GGG - Chr1:6570981-6571000 MsG0180000475.01.T01:CDS 50.0%
! ACCAGCATTGGAACTCCAAC+TGG + Chr1:6573353-6573372 None:intergenic 50.0%
! CGCGGAAGAGGAGTATGAAA+GGG - Chr1:6572235-6572254 MsG0180000475.01.T01:CDS 50.0%
! CGGCGATCTTGATGGTTTGA+TGG - Chr1:6573082-6573101 MsG0180000475.01.T01:CDS 50.0%
! TTTTGCAGACCTGTCCGTCA+AGG - Chr1:6570980-6570999 MsG0180000475.01.T01:CDS 50.0%
!! AAGGGTATTGGACGGATCTG+CGG - Chr1:6570999-6571018 MsG0180000475.01.T01:CDS 50.0%
!! AATTATTGGTGCCGCGGAAG+AGG - Chr1:6572223-6572242 MsG0180000475.01.T01:CDS 50.0%
!! AGAACCTGGTCTGGTGGATT+TGG - Chr1:6572368-6572387 MsG0180000475.01.T01:CDS 50.0%
!! GCAGTGATGAATTCTGGCTC+AGG - Chr1:6571471-6571490 MsG0180000475.01.T01:intron 50.0%
!! TGTCCGTCAAGGGTATTGGA+CGG - Chr1:6570991-6571010 MsG0180000475.01.T01:CDS 50.0%
!! TTGCGTTGGTTGCTTTCCAG+TGG - Chr1:6573566-6573585 MsG0180000475.01.T01:CDS 50.0%
ACGCAGTGCCCCAAACTTGT+CGG + Chr1:6573529-6573548 None:intergenic 55.0%
AGCAACAATCCGGGTTGCGT+TGG - Chr1:6573552-6573571 MsG0180000475.01.T01:CDS 55.0%
CCAAGCCCTTCACCAATCGA+AGG + Chr1:6572434-6572453 None:intergenic 55.0%
CCTTCGATTGGTGAAGGGCT+TGG - Chr1:6572431-6572450 MsG0180000475.01.T01:CDS 55.0%
CGGTTTATGGTGGTCGTGTG+GGG - Chr1:6571052-6571071 MsG0180000475.01.T01:CDS 55.0%
CTGCGTCTCAGCAACAATCC+GGG - Chr1:6573543-6573562 MsG0180000475.01.T01:CDS 55.0%
GCAGACTCGGAGTCATCTCA+AGG - Chr1:6571561-6571580 MsG0180000475.01.T01:intron 55.0%
GGAAAGCAACCAACGCAACC+CGG + Chr1:6573564-6573583 None:intergenic 55.0%
TCTCCAAGAACCTGGTCTGG+TGG - Chr1:6572362-6572381 MsG0180000475.01.T01:CDS 55.0%
! CCGCGGAAGAGGAGTATGAA+AGG - Chr1:6572234-6572253 MsG0180000475.01.T01:CDS 55.0%
! CTACGAGCGGAGGCTTTTTG+AGG - Chr1:6572468-6572487 MsG0180000475.01.T01:CDS 55.0%
! GACCTGTCCGTCAAGGGTAT+TGG - Chr1:6570987-6571006 MsG0180000475.01.T01:CDS 55.0%
! GAGGCACCATCATGCATTCG+TGG - Chr1:6573050-6573069 MsG0180000475.01.T01:CDS 55.0%
! GTCCAATACCCTTGACGGAC+AGG + Chr1:6570992-6571011 None:intergenic 55.0%
TATGGTGGTCGTGTGGGGTC+TGG - Chr1:6571057-6571076 MsG0180000475.01.T01:CDS 60.0%
! TCGGCCGACTCAGAATGACG+TGG - Chr1:6571434-6571453 MsG0180000475.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 6570577 6573763 6570577 ID=MsG0180000475.01;Name=MsG0180000475.01
Chr1 mRNA 6570577 6573763 6570577 ID=MsG0180000475.01.T01;Parent=MsG0180000475.01;Name=MsG0180000475.01.T01;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|1015
Chr1 exon 6571602 6573763 6571602 ID=MsG0180000475.01.T01:exon:27821;Parent=MsG0180000475.01.T01
Chr1 exon 6570577 6571462 6570577 ID=MsG0180000475.01.T01:exon:27822;Parent=MsG0180000475.01.T01
Chr1 CDS 6571602 6573763 6571602 ID=MsG0180000475.01.T01:cds;Parent=MsG0180000475.01.T01
Chr1 CDS 6570577 6571462 6570577 ID=MsG0180000475.01.T01:cds;Parent=MsG0180000475.01.T01
Gene Sequence

>MsG0180000475.01.T01

ATGATGATGAAACCAAACTTTGAGTATCAAAATAAAGATGTTGGTGAAACTGAAACTGATTCAAATATTGGTCATGAAGAATTACTTCGTGACATTGAAGAATTAAGCAAAGCTCTATACTTGGACAATACCCCTTTTAAGCCTTCTACTATCTCTGCTGAAAAAGCCCGTTTGTCAAAATCTCAACTTAACTCAAACCCGAGATTTGTTAGTGAGGATCTGTTGATAGGGGACAAGAAATTGTCTTCAAAATGGAATTGGAAGAAGCCCTTGAAAGTTTTAACAAATTTTGGTTCACAAAAGTTTGGTTGTTGTTTTAACCTTCATGTTCATTCGATTGAGGGACTGCCTTTGAGTTTCAACGGCGTTAGGTTAAGTGTGCATTGGAAAAGGAAAAACAGCGTTTTGCAGACCTGTCCGTCAAGGGTATTGGACGGATCTGCGGAGTTTGATGAAACTTTGGTACATAGATGTTCGGTTTATGGTGGTCGTGTGGGGTCTGGTCGTTCTGTTAAGTATGAATCCAAGCGATTCTTGATTTATGCTTCTGTTGTTGGGGAACCTGAACATGACATTGGGAAACATCAGGTTGATCTCACTAGGCTTTTGCCACCGAGTTTAGAAGAGTTATGGGGTGATAAAAGTTCAGGGAAATGGAGTACAAGTTTTAGGTTGGTTGGAAAAGCTTTAGGAGCTAGATTAAATGTTAGTTTCGGTTATCAAGTAATGAAGGATGATTTAATGAGATTTGGTGCTAGTAATGGGAATGTTGTTAACCTTATTAACTTGAAGACAGATTCAAGCATCCCCGACAATGTTGCTTGTTTTAGTTCTAACAATAGGGATGTCGTAAAGCTTCGGCCGACTCAGAATGACGTGGTGTTATCGAATGAAGCAGTGATGAATTCTGGCTCAGGTTTTTCTAAATCAATCACTTTCCTATATCAAAAGCTTGATGAGGGGAACTTCAATAATTCAGCACGGGCAGACTCGGAGTCATCTCAAGGATCAAATCTATATGTGTCTGATGACACTGAATTTTCCATCAGTGAACAAGGGGTAGAAACATCAGAAGAGGATTCGTTCGAATTTGATCAAACAGGAATTCAAATAATTGACATGTCCACAGTTGAAATCATTAATGTGGATGAGATTATTAAGGATGATGACACGTTTGCTGACAATAACGCAAGATGTGATTCACTGGATACCGTATGTTCTAGGAATGTGAATGTGGATATGGCAGATAACAGCAAACATCGATTCAGCATTTCATGTGTCGATCTACCATCCATGAAGATTGAGGATTCAGTTTCCGAGACGTCAGAGTTTCTTGACCAAGAAGAACACTACTTAAGTGTTAAATCAAATTATAAAGCACATAAAAAGCCACATAGCTTGGATGATGTCATCGACTCTGTCGCGAGTGATTTCTTAAAGACGCTGGCATTGGAGAGTGATTCATTTCGCTCAAGCTGTGACGGTGATCCCATGTCTCCTAGAGAGAAGCTTTTAAGACAGTTTGAAAATGAGGCTCTAGCTTCAGGCAACTTCGCTTTTGATTTTAATGCGAATGAGGAGGGATTGGGGCAATATACACTTGAACATAACTATGAGGATTATGACGTGGATTCTGATTTATCTTTAATTATTGGTGCCGCGGAAGAGGAGTATGAAAGGGAAAATCAATCATTAATGCAGAGAAGGAAGGCCAAAATTCTTGAAGATCTTGAGACTGATAAATTAATGCAACAATGGGGTTTAGATGAGAGGGACTTTGAAAATTCTCCAAGAACCTGGTCTGGTGGATTTGGAAGTCCAATTGAAATATCCGATGAAGAACCATCCATATTACCTTCGATTGGTGAAGGGCTTGGTTCGTTTGTTCAAACTACGAGCGGAGGCTTTTTGAGGTCCATGTGTCCTTCCCTCTTCAGAAATGCTAAGAATTGTGCGAGCCTCATCATTCAGGCTTCTAATCCAGTCGTTCTACCTGCAAAAATAGGTAACGATATATTGGATATACTTCTGTACATGGCATCTGCTAGAGTTGAAGAGCTGTGCAATTATATCTCTAAATCGATGCCTTTGCTAGATATCACTGGAAAATCCATTAAGCATATTGTGTCGGATGCTAAGACTAACAAGGAAGCTTCTGGAAGGAAGGGATCATGGCAGCATGATTTGTTTGAAGAATTTCCATGTAGTTATTTAACAGATAAAGACAAATGCTTGGACTCTTTGTCTCTAGAAGCTATAGCTCCTATGACTATTAACAAGATTGAATCTCTTTTAATAGAAGGGTTGAGAATTCAGTCTAGCATGTCAAATGAAGAGGCACCATCATGCATTCGTGGAGAGATCAACGGCGATCTTGATGGTTTGATGGATCTGTCGGTAACGTTGGATCAATGGTTGAGACTTGATTCTGGCATCATCCAAGGAGAACATAATTTGGAACAAATTTTGAAGATTCTTAAAGCACACAATTCTAAAATCACAGAATTATATAATGATGGGTTGGGAAATGGCATTGATAAGGTGAAAATAGATGGCAGAAAGCGCAGTTATTTGGGAGAGCACATAACAGTGGCTTTTATGATCCAGCACAGAGATCCTCTAAGAAATTATGAACCAGTTGGAGTTCCAATGCTGGTTTTAGCTCAGGCAGAAAGAGTTGACATAAATGAAATGGAGAAAGACTGCGACAATTTTGTTGAGAATGAAAATATAGATAAAGAACCACCTCAATCTAGATTCAAAATCAAGGAGATTCATCTTGCCGGTGTCCTTACAAAAAATAGTGGTAACCGACAAGTTTGGGGCACTGCGTCTCAGCAACAATCCGGGTTGCGTTGGTTGCTTTCCAGTGGCATGTGTAATACTGTCAAACACTCTTCTTCAAAATCGAAGTCGATTGTTGTTAGATCATCTTCACTGTTTACCAAATTGTTGAATCAAGATATCTTGTGGAGCATCTCTTGTGTTGATAGTAACATAGAGACTAATGCACACATTAGGAATCCTGATATCATGTTCCCAAAGTGA

Protein sequence

>MsG0180000475.01.T01

MMMKPNFEYQNKDVGETETDSNIGHEELLRDIEELSKALYLDNTPFKPSTISAEKARLSKSQLNSNPRFVSEDLLIGDKKLSSKWNWKKPLKVLTNFGSQKFGCCFNLHVHSIEGLPLSFNGVRLSVHWKRKNSVLQTCPSRVLDGSAEFDETLVHRCSVYGGRVGSGRSVKYESKRFLIYASVVGEPEHDIGKHQVDLTRLLPPSLEELWGDKSSGKWSTSFRLVGKALGARLNVSFGYQVMKDDLMRFGASNGNVVNLINLKTDSSIPDNVACFSSNNRDVVKLRPTQNDVVLSNEAVMNSGSGFSKSITFLYQKLDEGNFNNSARADSESSQGSNLYVSDDTEFSISEQGVETSEEDSFEFDQTGIQIIDMSTVEIINVDEIIKDDDTFADNNARCDSLDTVCSRNVNVDMADNSKHRFSISCVDLPSMKIEDSVSETSEFLDQEEHYLSVKSNYKAHKKPHSLDDVIDSVASDFLKTLALESDSFRSSCDGDPMSPREKLLRQFENEALASGNFAFDFNANEEGLGQYTLEHNYEDYDVDSDLSLIIGAAEEEYERENQSLMQRRKAKILEDLETDKLMQQWGLDERDFENSPRTWSGGFGSPIEISDEEPSILPSIGEGLGSFVQTTSGGFLRSMCPSLFRNAKNCASLIIQASNPVVLPAKIGNDILDILLYMASARVEELCNYISKSMPLLDITGKSIKHIVSDAKTNKEASGRKGSWQHDLFEEFPCSYLTDKDKCLDSLSLEAIAPMTINKIESLLIEGLRIQSSMSNEEAPSCIRGEINGDLDGLMDLSVTLDQWLRLDSGIIQGEHNLEQILKILKAHNSKITELYNDGLGNGIDKVKIDGRKRSYLGEHITVAFMIQHRDPLRNYEPVGVPMLVLAQAERVDINEMEKDCDNFVENENIDKEPPQSRFKIKEIHLAGVLTKNSGNRQVWGTASQQQSGLRWLLSSGMCNTVKHSSSKSKSIVVRSSSLFTKLLNQDILWSISCVDSNIETNAHIRNPDIMFPK*