AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031241.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031241.01.T01 MTR_6g021740 96.053 304 12 0 1 304 1 304 0.0 612
MsG0680031241.01.T01 MTR_2g437460 30.000 150 105 0 43 192 202 351 6.48e-17 81.6
MsG0680031241.01.T01 MTR_1g033960 29.530 149 105 0 44 192 263 411 1.48e-14 74.3
MsG0680031241.01.T01 MTR_1g033960 25.556 180 111 5 38 196 147 324 2.02e-11 65.1
MsG0680031241.01.T01 MTR_3g105900 26.174 149 110 0 48 196 939 1087 1.87e-14 74.3
MsG0680031241.01.T01 MTR_3g105900 24.454 229 150 4 67 288 222 434 4.47e-11 63.9
MsG0680031241.01.T01 MTR_2g026645 26.275 255 174 7 44 294 286 530 2.60e-14 73.6
MsG0680031241.01.T01 MTR_8g105170 26.829 164 116 2 34 195 371 532 3.66e-14 73.6
MsG0680031241.01.T01 MTR_1g068960 28.571 161 115 0 34 194 436 596 7.89e-14 72.4
MsG0680031241.01.T01 MTR_5g095130 24.521 261 175 4 44 304 621 859 9.22e-14 72.0
MsG0680031241.01.T01 MTR_3g088950 23.810 168 124 1 25 192 236 399 3.46e-13 70.1
MsG0680031241.01.T01 MTR_4g094688 26.554 177 128 1 34 210 311 485 9.90e-13 68.9
MsG0680031241.01.T01 MTR_1g095880 30.709 127 88 0 66 192 302 428 1.05e-12 68.9
MsG0680031241.01.T01 MTR_1g095880 29.487 156 97 3 48 192 249 402 4.68e-11 63.9
MsG0680031241.01.T01 MTR_8g098755 28.859 149 106 0 44 192 314 462 1.10e-12 68.9
MsG0680031241.01.T01 MTR_0014s0250 25.161 155 116 0 38 192 331 485 1.24e-12 68.6
MsG0680031241.01.T01 MTR_7g017570 27.326 172 125 0 35 206 344 515 1.62e-12 68.6
MsG0680031241.01.T01 MTR_1g035250 27.976 168 121 0 39 206 273 440 1.73e-12 68.2
MsG0680031241.01.T01 MTR_0237s0070 22.754 167 129 0 37 203 465 631 1.97e-12 68.2
MsG0680031241.01.T01 MTR_6g077540 23.030 165 127 0 37 201 356 520 3.36e-12 67.4
MsG0680031241.01.T01 MTR_7g017530 26.744 172 126 0 35 206 309 480 4.81e-12 67.0
MsG0680031241.01.T01 MTR_2g026635 28.169 142 101 1 44 184 288 429 4.82e-12 67.0
MsG0680031241.01.T01 MTR_6g079250 25.153 163 122 0 39 201 176 338 4.84e-12 66.2
MsG0680031241.01.T01 MTR_4g133740 25.581 172 126 2 34 204 310 480 4.86e-12 67.0
MsG0680031241.01.T01 MTR_4g074390 24.444 180 134 1 17 194 243 422 6.10e-12 66.6
MsG0680031241.01.T01 MTR_0177s0060 25.610 164 111 3 38 191 303 465 6.49e-12 66.2
MsG0680031241.01.T01 MTR_1g086500 27.703 148 98 3 39 181 154 297 6.50e-12 66.2
MsG0680031241.01.T01 MTR_0308s0020 25.161 155 116 0 38 192 327 481 7.05e-12 66.2
MsG0680031241.01.T01 MTR_0308s0020 26.174 149 110 0 44 192 193 341 6.84e-11 63.2
MsG0680031241.01.T01 MTR_3g034990 23.810 147 112 0 42 188 345 491 9.23e-12 65.9
MsG0680031241.01.T01 MTR_5g096480 32.558 129 80 2 71 195 1 126 9.28e-12 62.8
MsG0680031241.01.T01 MTR_6g080200 26.923 156 110 2 39 192 314 467 1.08e-11 65.5
MsG0680031241.01.T01 MTR_7g012890 23.718 156 119 0 37 192 331 486 1.10e-11 65.5
MsG0680031241.01.T01 MTR_6g069300 24.540 163 114 1 38 191 337 499 1.11e-11 65.9
MsG0680031241.01.T01 MTR_7g090340 26.974 152 110 1 44 194 254 405 1.23e-11 65.5
MsG0680031241.01.T01 MTR_5g045490 26.087 161 118 1 35 194 344 504 1.50e-11 65.5
MsG0680031241.01.T01 MTR_6g078190 26.282 156 115 0 39 194 171 326 1.55e-11 65.1
MsG0680031241.01.T01 MTR_3g114700 29.530 149 105 0 44 192 281 429 1.60e-11 65.1
MsG0680031241.01.T01 MTR_6g079180 24.051 158 120 0 44 201 181 338 1.72e-11 64.7
MsG0680031241.01.T01 MTR_3g053350 28.571 126 90 0 67 192 299 424 1.76e-11 65.1
MsG0680031241.01.T01 MTR_3g053350 28.846 156 104 2 44 195 240 392 3.88e-11 64.3
MsG0680031241.01.T01 MTR_6g079440 24.691 162 113 1 39 191 328 489 2.05e-11 64.7
MsG0680031241.01.T01 MTR_5g042370 26.752 157 115 0 35 191 261 417 2.52e-11 64.7
MsG0680031241.01.T01 MTR_1g040725 26.752 157 115 0 35 191 841 997 2.58e-11 64.7
MsG0680031241.01.T01 MTR_1g031720 26.562 128 94 0 65 192 437 564 2.81e-11 64.7
MsG0680031241.01.T01 MTR_2g036560 31.333 150 101 2 44 192 447 595 2.98e-11 64.7
MsG0680031241.01.T01 MTR_6g079210 23.418 158 121 0 44 201 181 338 3.23e-11 63.9
MsG0680031241.01.T01 MTR_4g108060 23.889 180 135 1 17 194 243 422 3.36e-11 64.3
MsG0680031241.01.T01 MTR_4g108060 23.889 180 135 1 17 194 109 288 3.51e-11 63.9
MsG0680031241.01.T01 MTR_0573s0020 23.750 160 122 0 44 203 60 219 3.87e-11 62.8
MsG0680031241.01.T01 MTR_2g030540 28.276 145 104 0 48 192 433 577 4.33e-11 63.9
MsG0680031241.01.T01 MTR_4g107180 22.581 155 120 0 38 192 226 380 4.42e-11 63.5
MsG0680031241.01.T01 MTR_8g107050 25.258 194 138 2 44 235 404 592 4.47e-11 63.9
MsG0680031241.01.T01 MTR_1g029490 22.581 155 120 0 38 192 338 492 4.59e-11 63.9
MsG0680031241.01.T01 MTR_8g107050 25.258 194 138 2 44 235 404 592 4.92e-11 63.9
MsG0680031241.01.T01 MTR_1g100593 23.913 184 125 1 35 203 292 475 5.81e-11 63.5
MsG0680031241.01.T01 MTR_8g071970 25.862 174 119 3 37 205 483 651 6.05e-11 63.5
MsG0680031241.01.T01 MTR_1g108270 29.464 112 79 0 67 178 284 395 6.37e-11 63.2
MsG0680031241.01.T01 MTR_3g023180 26.190 168 124 0 25 192 205 372 6.41e-11 63.5
MsG0680031241.01.T01 MTR_6g079240 21.557 167 131 0 37 203 174 340 6.44e-11 63.2
MsG0680031241.01.T01 MTR_8g071300 22.872 188 138 1 16 203 231 411 6.55e-11 63.5
MsG0680031241.01.T01 MTR_3g083680 20.000 230 158 4 75 304 366 569 7.01e-11 63.2
MsG0680031241.01.T01 MTR_6g079310 21.557 167 131 0 37 203 286 452 7.85e-11 62.8
MsG0680031241.01.T01 MTR_7g067460 29.104 134 91 2 48 179 167 298 7.86e-11 63.2
MsG0680031241.01.T01 MTR_2g035630 23.295 176 131 1 28 203 325 496 7.87e-11 63.2
MsG0680031241.01.T01 MTR_6g072030 25.170 147 110 0 34 180 354 500 8.29e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031241.01.T01 AT4G35850 54.098 305 133 3 1 304 1 299 8.26e-122 357
MsG0680031241.01.T01 AT2G16880 26.241 141 104 0 48 188 243 383 1.28e-13 71.6
MsG0680031241.01.T01 AT3G49730 24.176 182 132 2 38 218 229 405 1.45e-13 71.6
MsG0680031241.01.T01 AT2G37230 26.000 150 111 0 43 192 218 367 1.47e-13 71.6
MsG0680031241.01.T01 AT5G61990 24.627 268 188 4 35 298 407 664 4.16e-13 70.1
MsG0680031241.01.T01 AT4G16390 27.500 160 115 1 34 192 304 463 5.02e-13 69.7
MsG0680031241.01.T01 AT2G02150 29.114 158 112 0 48 205 265 422 5.94e-13 69.7
MsG0680031241.01.T01 AT2G02150 29.114 158 112 0 48 205 265 422 5.94e-13 69.7
MsG0680031241.01.T01 AT4G19440 27.703 148 101 2 48 192 556 700 1.38e-12 68.6
MsG0680031241.01.T01 AT4G19440 24.880 209 136 2 16 207 616 820 5.61e-11 63.9
MsG0680031241.01.T01 AT4G19440 27.703 148 101 2 48 192 556 700 1.38e-12 68.6
MsG0680031241.01.T01 AT4G19440 24.880 209 136 2 16 207 616 820 5.61e-11 63.9
MsG0680031241.01.T01 AT4G19440 27.703 148 101 2 48 192 556 700 1.38e-12 68.6
MsG0680031241.01.T01 AT4G19440 24.880 209 136 2 16 207 616 820 5.61e-11 63.9
MsG0680031241.01.T01 AT4G19440 27.703 148 101 2 48 192 556 700 1.38e-12 68.6
MsG0680031241.01.T01 AT4G19440 24.880 209 136 2 16 207 616 820 5.61e-11 63.9
MsG0680031241.01.T01 AT5G39710 22.927 205 152 1 35 239 300 498 1.43e-12 68.6
MsG0680031241.01.T01 AT5G39710 25.309 162 120 1 41 201 165 326 5.46e-11 63.9
MsG0680031241.01.T01 AT5G39710 26.752 157 115 0 39 195 374 530 9.25e-11 63.2
MsG0680031241.01.T01 AT5G16640 29.213 178 123 1 20 194 88 265 1.49e-12 68.2
MsG0680031241.01.T01 AT5G46680 23.864 264 176 9 44 297 82 330 3.35e-12 67.0
MsG0680031241.01.T01 AT1G05670 26.087 161 119 0 35 195 376 536 3.80e-12 67.4
MsG0680031241.01.T01 AT1G05670 26.087 161 119 0 35 195 376 536 3.80e-12 67.4
MsG0680031241.01.T01 AT1G05670 26.087 161 119 0 35 195 376 536 3.80e-12 67.4
MsG0680031241.01.T01 AT1G09900 25.301 332 187 13 8 303 150 456 5.34e-12 66.6
MsG0680031241.01.T01 AT5G65820 26.389 144 101 1 75 218 282 420 5.87e-12 66.6
MsG0680031241.01.T01 AT5G15010 27.273 143 99 2 44 185 372 510 6.33e-12 66.6
MsG0680031241.01.T01 AT5G04810 25.974 154 108 1 34 181 718 871 6.36e-12 66.6
MsG0680031241.01.T01 AT1G09820 28.395 162 113 1 34 192 212 373 7.54e-12 66.2
MsG0680031241.01.T01 AT1G63230 23.464 179 135 1 39 217 140 316 7.95e-12 65.5
MsG0680031241.01.T01 AT3G60050 27.564 156 113 0 40 195 214 369 1.04e-11 65.5
MsG0680031241.01.T01 AT3G60050 27.564 156 113 0 40 195 214 369 1.04e-11 65.5
MsG0680031241.01.T01 AT1G79490 25.455 165 123 0 34 198 337 501 1.26e-11 65.9
MsG0680031241.01.T01 AT3G16890 22.381 210 147 2 35 228 450 659 1.34e-11 65.5
MsG0680031241.01.T01 AT2G15630 26.515 132 97 0 67 198 419 550 1.56e-11 65.5
MsG0680031241.01.T01 AT3G16890 22.381 210 147 2 35 228 321 530 1.57e-11 65.1
MsG0680031241.01.T01 AT1G63400 27.500 160 116 0 33 192 108 267 3.88e-11 63.9
MsG0680031241.01.T01 AT5G12100 23.780 164 119 2 33 195 552 710 4.99e-11 63.9
MsG0680031241.01.T01 AT3G53700 25.166 151 113 0 42 192 467 617 5.48e-11 63.9
MsG0680031241.01.T01 AT5G41170 26.452 155 114 0 49 203 11 165 6.58e-11 63.2
MsG0680031241.01.T01 AT4G20740 27.381 168 121 1 25 192 209 375 6.73e-11 63.5
MsG0680031241.01.T01 AT5G41170 26.452 155 114 0 49 203 111 265 7.07e-11 63.2
MsG0680031241.01.T01 AT5G41170 26.452 155 114 0 49 203 111 265 7.39e-11 63.2
MsG0680031241.01.T01 AT5G02860 26.573 143 105 0 34 176 443 585 7.46e-11 63.5
MsG0680031241.01.T01 AT5G02860 26.573 143 105 0 34 176 443 585 7.46e-11 63.5
MsG0680031241.01.T01 AT5G02860 26.573 143 105 0 34 176 443 585 7.46e-11 63.5
MsG0680031241.01.T01 AT5G02860 26.573 143 105 0 34 176 443 585 7.46e-11 63.5
MsG0680031241.01.T01 AT5G02860 26.573 143 105 0 34 176 443 585 7.46e-11 63.5
MsG0680031241.01.T01 AT1G62680 27.211 147 107 0 48 194 123 269 7.97e-11 63.2
MsG0680031241.01.T01 AT1G62680 27.211 147 107 0 48 194 123 269 7.97e-11 63.2
MsG0680031241.01.T01 AT1G51965 30.841 107 70 2 87 192 454 557 8.04e-11 63.2
MsG0680031241.01.T01 AT5G50280 25.466 161 119 1 35 194 369 529 8.66e-11 63.2
MsG0680031241.01.T01 AT1G63630 21.839 174 134 1 44 217 95 266 9.99e-11 61.6

Find 100 sgRNAs with CRISPR-Local

Find 412 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGATCCATTAAATTATT+TGG 0.104263 6:-16556140 None:intergenic
TGAGAGTTTGCAACACTTTA+TGG 0.123002 6:-16556234 None:intergenic
GGGTCACTTCCACGGGTTTC+GGG 0.130446 6:+16549615 MsG0680031241.01.T01:CDS
ATTTGGATCATACATAAATT+TGG 0.198824 6:-16556123 None:intergenic
AGTGACAAGAGAAAATTTAT+TGG 0.217500 6:+16555928 MsG0680031241.01.T01:three_prime_UTR
GTATGATCCAAATAATTTAA+TGG 0.218344 6:+16556133 MsG0680031241.01.T01:three_prime_UTR
TGGGTCACTTCCACGGGTTT+CGG 0.225661 6:+16549614 MsG0680031241.01.T01:CDS
TGCATGACAATATAGATATC+AGG 0.270813 6:-16555591 None:intergenic
AAATTTCTTCAATCTCTCTT+AGG 0.270939 6:+16549484 MsG0680031241.01.T01:CDS
TCAGGAATACAACACTGTTT+TGG 0.277702 6:+16549698 MsG0680031241.01.T01:CDS
CAGATGTAGGTTTGTACATT+TGG 0.278420 6:-16552941 None:intergenic
TGATATGACCGCAGCTGGTC+TGG 0.279892 6:+16553343 MsG0680031241.01.T01:CDS
GCATCGAAATCATCAGTAAA+AGG 0.287772 6:-16553419 None:intergenic
TACATACATAGGAGAAAATA+TGG 0.290252 6:+16556340 MsG0680031241.01.T01:three_prime_UTR
GAACTCTGATCAGGCTGTTC+AGG 0.318795 6:+16552774 MsG0680031241.01.T01:CDS
CATTATGAATTTCAACTAAT+AGG 0.322342 6:+16556158 MsG0680031241.01.T01:three_prime_UTR
CCCATTTCGCACTGCAAAAC+GGG 0.330450 6:-16549595 None:intergenic
GCATGATGCTTTCTTCTTCA+AGG 0.330861 6:+16552094 MsG0680031241.01.T01:CDS
TTAAATAAGTTCTGCTATGC+TGG 0.341477 6:+16553368 MsG0680031241.01.T01:CDS
ATATTGTCATGCAAGTAATT+AGG 0.361423 6:+16555601 MsG0680031241.01.T01:CDS
GAGAGTTTGCAACACTTTAT+GGG 0.367413 6:-16556233 None:intergenic
TTCCAGCAGAAGAGTATAAC+AGG 0.368904 6:+16549655 MsG0680031241.01.T01:CDS
TTCATGCTCGCTTTAAAGTT+AGG 0.376485 6:+16555734 MsG0680031241.01.T01:three_prime_UTR
CCAAATGAAAATCATGGGTT+TGG 0.377536 6:+16552118 MsG0680031241.01.T01:CDS
CTCCTGTTATACTCTTCTGC+TGG 0.379633 6:-16549657 None:intergenic
CACTCGGTCTATGCGTCCTT+GGG 0.383140 6:-16552984 None:intergenic
TACATTTGGCTTTACTTCCA+TGG 0.387492 6:-16552927 None:intergenic
ACACTCGGTCTATGCGTCCT+TGG 0.391054 6:-16552985 None:intergenic
ATTAATCAATGCACTGGTAA+TGG 0.401767 6:-16555769 None:intergenic
CAACGGCAGAATACGTTACT+AGG 0.406550 6:+16553640 MsG0680031241.01.T01:CDS
TATGAAGATATGATGCTTGA+TGG 0.425865 6:+16552008 MsG0680031241.01.T01:CDS
CAAGGACCAAATGAAAATCA+TGG 0.433875 6:+16552112 MsG0680031241.01.T01:CDS
GTCCTTTATTATGATAAAAG+AGG 0.440256 6:-16556202 None:intergenic
GCGAAATGGGTCACTTCCAC+GGG 0.441296 6:+16549608 MsG0680031241.01.T01:CDS
GATATGACCGCAGCTGGTCT+GGG 0.446322 6:+16553344 MsG0680031241.01.T01:CDS
CAGCAGCATTAAATGCAGTA+TGG 0.448079 6:-16553698 None:intergenic
GGCGTGGAGGATTCTTGAAC+AGG 0.453377 6:+16553661 MsG0680031241.01.T01:CDS
TGCGGATTTCAAGAATGTTA+AGG 0.462395 6:+16553719 MsG0680031241.01.T01:CDS
CTGCTGGAACATTGTAGAAT+CGG 0.467636 6:-16549641 None:intergenic
GGATGCACTTCTTGAAATGC+TGG 0.478829 6:+16555551 MsG0680031241.01.T01:CDS
TATCATAATAAAGGACAAGT+TGG 0.478873 6:+16556209 MsG0680031241.01.T01:three_prime_UTR
CACCATCACATTCTCAGCAT+TGG 0.479555 6:-16553586 None:intergenic
ACCCATTTCGCACTGCAAAA+CGG 0.485063 6:-16549596 None:intergenic
ACTTCTTGAAATGCTGGAAA+AGG 0.494222 6:+16555557 MsG0680031241.01.T01:CDS
TAAATATAGATTAACCAAGC+TGG 0.500398 6:+16555709 MsG0680031241.01.T01:three_prime_UTR
ACATGTCTTAGTGTTACAAA+TGG 0.505318 6:+16555839 MsG0680031241.01.T01:three_prime_UTR
AACTTTCTAATTTCAACCTG+TGG 0.505817 6:+16552742 MsG0680031241.01.T01:CDS
GAAATGCAAGAACTCTGATC+AGG 0.506823 6:+16552765 MsG0680031241.01.T01:CDS
GTCCGTGATATGACCGCAGC+TGG 0.507308 6:+16553338 MsG0680031241.01.T01:CDS
TGCAGTATGGTATGCAACAA+AGG 0.508294 6:-16553685 None:intergenic
CAAGGGAATGAAAAGTTTCA+CGG 0.514406 6:-16552043 None:intergenic
CTTGCTGTTGGATCCATGAG+AGG 0.520661 6:+16552062 MsG0680031241.01.T01:CDS
TGCGAAATGGGTCACTTCCA+CGG 0.520994 6:+16549607 MsG0680031241.01.T01:CDS
AGCGAGCATGAATTCCAGCT+TGG 0.524355 6:-16555723 None:intergenic
TATGAATTTCAACTAATAGG+AGG 0.532549 6:+16556161 MsG0680031241.01.T01:three_prime_UTR
TAAATAAGTTCTGCTATGCT+GGG 0.534812 6:+16553369 MsG0680031241.01.T01:CDS
AAGGACCAAATGAAAATCAT+GGG 0.535637 6:+16552113 MsG0680031241.01.T01:CDS
AGAGTTCTTGCATTTCCCAC+AGG 0.538323 6:-16552758 None:intergenic
GCAGTATGGTATGCAACAAA+GGG 0.538769 6:-16553684 None:intergenic
GCATGACAATATAGATATCA+GGG 0.542739 6:-16555590 None:intergenic
GAAGCAATTAATCAATGCAC+TGG 0.544309 6:-16555775 None:intergenic
TTTGGAGGAGATGAAATCCA+TGG 0.546073 6:+16552910 MsG0680031241.01.T01:CDS
TCTAACATAATCCCTTCTGT+TGG 0.546598 6:+16556081 MsG0680031241.01.T01:three_prime_UTR
CTAGTAACGTATTCTGCCGT+TGG 0.551607 6:-16553639 None:intergenic
ATGAATTTCAACTAATAGGA+GGG 0.552060 6:+16556162 MsG0680031241.01.T01:three_prime_UTR
ACTTTCTAATTTCAACCTGT+GGG 0.553816 6:+16552743 MsG0680031241.01.T01:CDS
ATGCATTCTAGAGCCTCTCA+TGG 0.555834 6:-16552075 None:intergenic
AGAGTTTGCAACACTTTATG+GGG 0.558100 6:-16556232 None:intergenic
ATGGTTGCTTTGTTTCAACT+AGG 0.565650 6:-16555903 None:intergenic
TACTGCATTTAATGCTGCTG+CGG 0.567016 6:+16553701 MsG0680031241.01.T01:CDS
GAATGAAAAGTTTCACGGGT+TGG 0.567753 6:-16552038 None:intergenic
GGTCACTTCCACGGGTTTCG+GGG 0.571682 6:+16549616 MsG0680031241.01.T01:CDS
TCTAGTGCATGCCATTGTCT+AGG 0.573105 6:+16555811 MsG0680031241.01.T01:three_prime_UTR
AAGGGAATGAAAAGTTTCAC+GGG 0.575462 6:-16552042 None:intergenic
TTAGTGTTACAAATGGTGTA+TGG 0.576246 6:+16555846 MsG0680031241.01.T01:three_prime_UTR
CATGAATTGCAACCAACAGA+AGG 0.580022 6:-16556093 None:intergenic
CAATGCTGAGAATGTGATGG+TGG 0.593534 6:+16553587 MsG0680031241.01.T01:CDS
ATGTGGAGAGGTCAAAGCAA+TGG 0.595505 6:+16553541 MsG0680031241.01.T01:CDS
GACCAGCTGCGGTCATATCA+CGG 0.600989 6:-16553340 None:intergenic
GCAGAATACGTTACTAGGCG+TGG 0.606407 6:+16553645 MsG0680031241.01.T01:CDS
CTACATGCATGTGCAGCCCA+AGG 0.607018 6:+16552968 MsG0680031241.01.T01:CDS
CTCTCATGGATCCAACAGCA+AGG 0.608407 6:-16552061 None:intergenic
ATTTAATCCCAGACCAGCTG+CGG 0.616513 6:-16553351 None:intergenic
TGCATGTAGCAAGCAGATGT+AGG 0.624370 6:-16552954 None:intergenic
AATCGGAGCCCCGAAACCCG+TGG 0.634595 6:-16549624 None:intergenic
CATGACAATATAGATATCAG+GGG 0.638180 6:-16555589 None:intergenic
ATGAATTGCAACCAACAGAA+GGG 0.638387 6:-16556092 None:intergenic
TCTCATGGATCCAACAGCAA+GGG 0.638957 6:-16552060 None:intergenic
GATGGTGGGTGTTACTGATG+AGG 0.655231 6:+16553602 MsG0680031241.01.T01:CDS
ACATGTTAATACCTAGACAA+TGG 0.675595 6:-16555822 None:intergenic
TCTCGAATGACAATATAACC+AGG 0.679650 6:-16556018 None:intergenic
TGTTTAATAAGAGATAAGCA+AGG 0.680550 6:-16556430 None:intergenic
CGCCAATGCTGAGAATGTGA+TGG 0.683499 6:+16553584 MsG0680031241.01.T01:CDS
GTTCTCTCAATGCTCAACGA+AGG 0.689538 6:+16549721 MsG0680031241.01.T01:CDS
TTAATAAGAGATAAGCAAGG+TGG 0.693140 6:-16556427 None:intergenic
ATATGATGCTTGATGGAGTG+AGG 0.694446 6:+16552015 MsG0680031241.01.T01:CDS
GGAGTTATATAACTTACCAA+CGG 0.695293 6:+16553623 MsG0680031241.01.T01:CDS
AATGCTGAGAATGTGATGGT+GGG 0.697576 6:+16553588 MsG0680031241.01.T01:CDS
AGGTTATTGAGTATGTGGAG+AGG 0.702509 6:+16553529 MsG0680031241.01.T01:intron
GAATACGTTACTAGGCGTGG+AGG 0.710334 6:+16553648 MsG0680031241.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATAATTATATTTTT+GGG + Chr6:16551950-16551969 MsG0680031241.01.T01:intron 0.0%
!!! TTTTAAAATAATTATATTTT+TGG + Chr6:16551949-16551968 MsG0680031241.01.T01:intron 0.0%
!! AAATATACAATATTATTAAC+CGG - Chr6:16554147-16554166 None:intergenic 10.0%
!! ATACAAAATCATAAAAAAAA+TGG - Chr6:16553083-16553102 None:intergenic 10.0%
!! TGAAAAATAAAAACATATAA+AGG - Chr6:16553277-16553296 None:intergenic 10.0%
!!! ATTCATTTAATTTTTTTTAC+TGG - Chr6:16554331-16554350 None:intergenic 10.0%
!!! TGAAAAATATCAAATTTTTT+TGG + Chr6:16549981-16550000 MsG0680031241.01.T01:intron 10.0%
!! AGAGTTTAAAAATATCAATT+TGG + Chr6:16550900-16550919 MsG0680031241.01.T01:intron 15.0%
!! ATAAACAAATCTACAAAAAT+GGG - Chr6:16555100-16555119 None:intergenic 15.0%
!! ATTATTTAAATTAATGATCC+AGG + Chr6:16553306-16553325 MsG0680031241.01.T01:intron 15.0%
!! ATTTGTTTATATATCAAATG+CGG + Chr6:16555110-16555129 MsG0680031241.01.T01:intron 15.0%
!! TAAAAAAGATCTAAATTTGT+TGG + Chr6:16551551-16551570 MsG0680031241.01.T01:intron 15.0%
!! TAATGATCCATTAAATTATT+TGG - Chr6:16556143-16556162 None:intergenic 15.0%
!! TATAAACAAATCTACAAAAA+TGG - Chr6:16555101-16555120 None:intergenic 15.0%
!! TTAATAAAAAAATGACCTAA+AGG + Chr6:16553050-16553069 MsG0680031241.01.T01:intron 15.0%
!!! AAAAATCTTTTAAAGTTCAT+CGG + Chr6:16555878-16555897 MsG0680031241.01.T01:three_prime_UTR 15.0%
!!! AATTTTAAATCAAATAATCC+CGG - Chr6:16555039-16555058 None:intergenic 15.0%
!!! AGACTTTGTATTTTATAATT+TGG + Chr6:16552519-16552538 MsG0680031241.01.T01:intron 15.0%
!!! ATCATTTTTAAGATGATTTT+AGG + Chr6:16550952-16550971 MsG0680031241.01.T01:intron 15.0%
!!! ATCTATGTTTGATATTTTTA+AGG + Chr6:16550237-16550256 MsG0680031241.01.T01:intron 15.0%
!!! ATTAAGTTGAATTTATTTAC+TGG + Chr6:16551431-16551450 MsG0680031241.01.T01:intron 15.0%
!!! GAAATATAAAGCTTTTTTTA+AGG - Chr6:16555385-16555404 None:intergenic 15.0%
!!! TAAAAAAAGCTTTATATTTC+TGG + Chr6:16555385-16555404 MsG0680031241.01.T01:intron 15.0%
!!! TCATTTTTAAGATGATTTTA+GGG + Chr6:16550953-16550972 MsG0680031241.01.T01:intron 15.0%
!!! TCATTTTTAGGATAATTTTA+GGG + Chr6:16550193-16550212 MsG0680031241.01.T01:intron 15.0%
!!! TCTATGTTTGATATTTTTAA+GGG + Chr6:16550238-16550257 MsG0680031241.01.T01:intron 15.0%
!!! TTATATTTCTGATATTGATT+TGG + Chr6:16555276-16555295 MsG0680031241.01.T01:intron 15.0%
!!! TTATATTTTTGGGTTTTATT+TGG + Chr6:16551960-16551979 MsG0680031241.01.T01:intron 15.0%
!!! TTTTAGTAGAAAAAAAATAG+TGG - Chr6:16553156-16553175 None:intergenic 15.0%
!! AAATCAAATGTAGAAATTGT+AGG + Chr6:16550506-16550525 MsG0680031241.01.T01:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG + Chr6:16554715-16554734 MsG0680031241.01.T01:intron 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG + Chr6:16554713-16554732 MsG0680031241.01.T01:intron 20.0%
!! AGTATACATAAGTACTTAAA+TGG + Chr6:16550834-16550853 MsG0680031241.01.T01:intron 20.0%
!! AGTGTAATCATAATCATAAT+AGG - Chr6:16554301-16554320 None:intergenic 20.0%
!! ATAACAATAAAAAACTGAAC+AGG - Chr6:16555451-16555470 None:intergenic 20.0%
!! ATAGATCTTAGTGTTTATTA+TGG + Chr6:16551051-16551070 MsG0680031241.01.T01:intron 20.0%
!! ATGAAATCATGAAAATCAAA+CGG + Chr6:16551749-16551768 MsG0680031241.01.T01:intron 20.0%
!! ATGACAGTGATATAAATTAA+AGG + Chr6:16554349-16554368 MsG0680031241.01.T01:intron 20.0%
!! ATTCATATTTGACATTCTTA+AGG + Chr6:16550997-16551016 MsG0680031241.01.T01:intron 20.0%
!! ATTTGGATCATACATAAATT+TGG - Chr6:16556126-16556145 None:intergenic 20.0%
!! CAAAAACGAAAATATCAATT+TGG - Chr6:16550264-16550283 None:intergenic 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG + Chr6:16554714-16554733 MsG0680031241.01.T01:intron 20.0%
!! CAGAAATATAAAGCTATTAT+AGG - Chr6:16555267-16555286 None:intergenic 20.0%
!! CATTATGAATTTCAACTAAT+AGG + Chr6:16556158-16556177 MsG0680031241.01.T01:three_prime_UTR 20.0%
!! GAATCACATCTAATTAAAAA+GGG + Chr6:16554977-16554996 MsG0680031241.01.T01:intron 20.0%
!! GACAATACATAAAATATGTA+AGG + Chr6:16550729-16550748 MsG0680031241.01.T01:intron 20.0%
!! GGACAAAAATAAAATCAAAT+GGG + Chr6:16554797-16554816 MsG0680031241.01.T01:intron 20.0%
!! GTAAAAACTAATACATACAT+AGG + Chr6:16556329-16556348 MsG0680031241.01.T01:three_prime_UTR 20.0%
!! GTATGATCCAAATAATTTAA+TGG + Chr6:16556133-16556152 MsG0680031241.01.T01:three_prime_UTR 20.0%
!! TCCAAAAAAAAAGAAAAACT+GGG + Chr6:16552326-16552345 MsG0680031241.01.T01:intron 20.0%
!! TGAATCACATCTAATTAAAA+AGG + Chr6:16554976-16554995 MsG0680031241.01.T01:intron 20.0%
!! TTATTACAGCTTATGAATTA+TGG + Chr6:16550414-16550433 MsG0680031241.01.T01:intron 20.0%
!! TTCAAGAGAATTTATCAAAA+CGG + Chr6:16551481-16551500 MsG0680031241.01.T01:intron 20.0%
!! TTCCAAAAAAAAAGAAAAAC+TGG + Chr6:16552325-16552344 MsG0680031241.01.T01:intron 20.0%
!! TTGAAAATTGAAATTTCAGT+TGG + Chr6:16552353-16552372 MsG0680031241.01.T01:intron 20.0%
!! TTTAATACACATACAAACAA+AGG - Chr6:16554672-16554691 None:intergenic 20.0%
!! TTTCTTAAGAAATGTGAAAA+AGG - Chr6:16554599-16554618 None:intergenic 20.0%
!!! AGGACTAATTTTAGTTTTTA+GGG + Chr6:16551399-16551418 MsG0680031241.01.T01:intron 20.0%
!!! ATAGTTTGACTTTATTTAGT+AGG + Chr6:16551259-16551278 MsG0680031241.01.T01:intron 20.0%
!!! ATCGTCTTTTAAAATTTGTA+TGG + Chr6:16555503-16555522 MsG0680031241.01.T01:intron 20.0%
!!! ATTTGGTAATTTGAGTATTT+AGG + Chr6:16550326-16550345 MsG0680031241.01.T01:intron 20.0%
!!! CGTTAATATCTTTTCTTTTT+TGG + Chr6:16555474-16555493 MsG0680031241.01.T01:intron 20.0%
!!! CTGTTCATGATATTTTTAAA+TGG + Chr6:16553765-16553784 MsG0680031241.01.T01:intron 20.0%
!!! CTTATTGTTTTTTTTTGTGA+AGG + Chr6:16550299-16550318 MsG0680031241.01.T01:intron 20.0%
!!! GATGAACTTTAAAAGATTTT+TGG - Chr6:16555879-16555898 None:intergenic 20.0%
!!! GTCATTTTTAGGATAATTTT+AGG + Chr6:16550192-16550211 MsG0680031241.01.T01:intron 20.0%
!!! GTTATTCACTTTGAATTTTT+AGG + Chr6:16549914-16549933 MsG0680031241.01.T01:intron 20.0%
!!! TGATATTTTTAAATGGTTCT+TGG + Chr6:16553772-16553791 MsG0680031241.01.T01:intron 20.0%
!!! TTAGACTTCCTATTTTATTT+GGG + Chr6:16554515-16554534 MsG0680031241.01.T01:intron 20.0%
!!! TTGAGTATTTAGGATATATT+AGG + Chr6:16550336-16550355 MsG0680031241.01.T01:intron 20.0%
!!! TTTAAAACAATTGACAAATG+AGG - Chr6:16551936-16551955 None:intergenic 20.0%
!!! TTTTTTTGGTGTTAACTTTT+CGG + Chr6:16549995-16550014 MsG0680031241.01.T01:intron 20.0%
!!! TTTTTTTGTTCAAAGAGAAA+AGG - Chr6:16549748-16549767 None:intergenic 20.0%
! AAATTCAACTTAATCCAAAC+AGG - Chr6:16551425-16551444 None:intergenic 25.0%
! AAATTTCTTCAATCTCTCTT+AGG + Chr6:16549484-16549503 MsG0680031241.01.T01:CDS 25.0%
! AACATTAATGAACTCATGTA+AGG - Chr6:16551638-16551657 None:intergenic 25.0%
! AATAAAATAGCACATACATC+AGG - Chr6:16552146-16552165 None:intergenic 25.0%
! AATATTATTAACCGGTAAAG+TGG - Chr6:16554139-16554158 None:intergenic 25.0%
! AATGAAATTGAAGAAGAAAG+AGG - Chr6:16549516-16549535 None:intergenic 25.0%
! AATTAAGATATCCACTTTAC+CGG + Chr6:16554125-16554144 MsG0680031241.01.T01:intron 25.0%
! ACATTAATGAACTCATGTAA+GGG - Chr6:16551637-16551656 None:intergenic 25.0%
! ACGTTATACATATAAAGACA+AGG - Chr6:16552866-16552885 None:intergenic 25.0%
! AGCTTATGAATTATGGAATT+TGG + Chr6:16550421-16550440 MsG0680031241.01.T01:intron 25.0%
! AGGACTAATTTGAGTATTTA+GGG + Chr6:16551074-16551093 MsG0680031241.01.T01:intron 25.0%
! AGTGACAAGAGAAAATTTAT+TGG + Chr6:16555928-16555947 MsG0680031241.01.T01:three_prime_UTR 25.0%
! ATATTGTCATGCAAGTAATT+AGG + Chr6:16555601-16555620 MsG0680031241.01.T01:CDS 25.0%
! ATATTTGACATTCTTAAGGA+CGG + Chr6:16551001-16551020 MsG0680031241.01.T01:intron 25.0%
! ATGAAATTGAAGAAGAAAGA+GGG - Chr6:16549515-16549534 None:intergenic 25.0%
! ATGAATTTCAACTAATAGGA+GGG + Chr6:16556162-16556181 MsG0680031241.01.T01:three_prime_UTR 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + Chr6:16554761-16554780 MsG0680031241.01.T01:intron 25.0%
! ATTAGTTCATTAATGTTGTG+AGG + Chr6:16551676-16551695 MsG0680031241.01.T01:intron 25.0%
! CTTATAACAAAAAGTTGTAC+AGG - Chr6:16552187-16552206 None:intergenic 25.0%
! GACAACATAAAAAAAAGAGA+AGG - Chr6:16553227-16553246 None:intergenic 25.0%
! GATGTTGTATGATTGAAAAA+TGG + Chr6:16552249-16552268 MsG0680031241.01.T01:intron 25.0%
! GGGACAAAAATAAAATCAAA+TGG + Chr6:16554796-16554815 MsG0680031241.01.T01:intron 25.0%
! GTCAAATCAAGAAATAGATA+CGG - Chr6:16553456-16553475 None:intergenic 25.0%
! GTCCTTTATTATGATAAAAG+AGG - Chr6:16556205-16556224 None:intergenic 25.0%
! TAAATATAGATTAACCAAGC+TGG + Chr6:16555709-16555728 MsG0680031241.01.T01:three_prime_UTR 25.0%
! TAATACGAAGTAATAAAGTG+TGG + Chr6:16550040-16550059 MsG0680031241.01.T01:intron 25.0%
! TACATAAAATATGTAAGGTC+CGG + Chr6:16550734-16550753 MsG0680031241.01.T01:intron 25.0%
! TACATACATAGGAGAAAATA+TGG + Chr6:16556340-16556359 MsG0680031241.01.T01:three_prime_UTR 25.0%
! TATAAGAAAAGAGCAATTTC+TGG + Chr6:16554891-16554910 MsG0680031241.01.T01:intron 25.0%
! TATCATAATAAAGGACAAGT+TGG + Chr6:16556209-16556228 MsG0680031241.01.T01:three_prime_UTR 25.0%
! TATGAATTTCAACTAATAGG+AGG + Chr6:16556161-16556180 MsG0680031241.01.T01:three_prime_UTR 25.0%
! TGAAAAGGAGTTTACATTTA+GGG + Chr6:16554776-16554795 MsG0680031241.01.T01:intron 25.0%
! TGTTTAATAAGAGATAAGCA+AGG - Chr6:16556433-16556452 None:intergenic 25.0%
! TTAATATTCTACTGCATTAG+AGG + Chr6:16552828-16552847 MsG0680031241.01.T01:intron 25.0%
! TTATTAGCCCCAAATAAAAT+AGG - Chr6:16554526-16554545 None:intergenic 25.0%
! TTGAAAAGGAGTTTACATTT+AGG + Chr6:16554775-16554794 MsG0680031241.01.T01:intron 25.0%
!! AATTGACATTTTCAATTCTG+AGG + Chr6:16551355-16551374 MsG0680031241.01.T01:intron 25.0%
!! AATTTTCTCTTGTCACTAAA+TGG - Chr6:16555925-16555944 None:intergenic 25.0%
!! ACCCAGTTTTTCTTTTTTTT+TGG - Chr6:16552330-16552349 None:intergenic 25.0%
!! AGTTACTCCATTTTCATTTT+TGG - Chr6:16550780-16550799 None:intergenic 25.0%
!! ATTTTGTATTTCGTCCAAAT+CGG + Chr6:16553094-16553113 MsG0680031241.01.T01:intron 25.0%
!! CTCCAAAATCTTCATTTTAA+AGG - Chr6:16552897-16552916 None:intergenic 25.0%
!! CTCCTCTTTTATCATAATAA+AGG + Chr6:16556200-16556219 MsG0680031241.01.T01:three_prime_UTR 25.0%
!! CTTAGACTTCCTATTTTATT+TGG + Chr6:16554514-16554533 MsG0680031241.01.T01:intron 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + Chr6:16554725-16554744 MsG0680031241.01.T01:intron 25.0%
!! TGAATTTTGAACTTATCTAC+TGG + Chr6:16550370-16550389 MsG0680031241.01.T01:intron 25.0%
!!! AAGTGAGCTTTATTGAAATT+AGG - Chr6:16549546-16549565 None:intergenic 25.0%
!!! ACTAACTTTCATGCTTTTTA+AGG - Chr6:16551788-16551807 None:intergenic 25.0%
!!! ACTTGTTATTTTGTCGAAAA+AGG + Chr6:16553509-16553528 MsG0680031241.01.T01:intron 25.0%
!!! AGGAAATGTTTTTTTTTTCC+AGG - Chr6:16555247-16555266 None:intergenic 25.0%
!!! AGTGAGCTTTATTGAAATTA+GGG - Chr6:16549545-16549564 None:intergenic 25.0%
!!! ATTTTTGGGTTTTATTTGGT+AGG + Chr6:16551964-16551983 MsG0680031241.01.T01:intron 25.0%
!!! CTTGTTTTCATAATCTTTTC+AGG + Chr6:16551201-16551220 MsG0680031241.01.T01:intron 25.0%
!!! CTTTAAAATGAAGATTTTGG+AGG + Chr6:16552895-16552914 MsG0680031241.01.T01:intron 25.0%
!!! GAGGACTAATTTTAGTTTTT+AGG + Chr6:16551398-16551417 MsG0680031241.01.T01:intron 25.0%
!!! GAGTCAAATTAGTCATTTTT+AGG + Chr6:16550181-16550200 MsG0680031241.01.T01:intron 25.0%
!!! GTCCTTTAAAATGAAGATTT+TGG + Chr6:16552892-16552911 MsG0680031241.01.T01:intron 25.0%
!!! TAGACTTCCTATTTTATTTG+GGG + Chr6:16554516-16554535 MsG0680031241.01.T01:intron 25.0%
!!! TATTTCTGATATTGATTTGG+TGG + Chr6:16555279-16555298 MsG0680031241.01.T01:intron 25.0%
!!! TTGTTTTTGTATTTCCTGAA+GGG + Chr6:16554860-16554879 MsG0680031241.01.T01:intron 25.0%
!!! TTTATGCTTTCTAGTTTCTA+TGG + Chr6:16554388-16554407 MsG0680031241.01.T01:intron 25.0%
!!! TTTGTTTTTGTATTTCCTGA+AGG + Chr6:16554859-16554878 MsG0680031241.01.T01:intron 25.0%
!!! TTTTAGAGAACTTATGGAAA+CGG + Chr6:16551149-16551168 MsG0680031241.01.T01:intron 25.0%
!!! TTTTTTGTGAAGGACTAATT+TGG + Chr6:16550309-16550328 MsG0680031241.01.T01:intron 25.0%
AAAAATGGCATGTTTCCTTT+AGG - Chr6:16553068-16553087 None:intergenic 30.0%
AAACTACGCTAAAAATGTTC+AGG + Chr6:16549680-16549699 MsG0680031241.01.T01:CDS 30.0%
AAAGGCTAAACATAGAAGAA+AGG - Chr6:16554441-16554460 None:intergenic 30.0%
AACTTTCTAATTTCAACCTG+TGG + Chr6:16552742-16552761 MsG0680031241.01.T01:CDS 30.0%
AAGAAATGTGAAAAAGGCAA+AGG - Chr6:16554593-16554612 None:intergenic 30.0%
AAGGACCAAATGAAAATCAT+GGG + Chr6:16552113-16552132 MsG0680031241.01.T01:CDS 30.0%
AATAACCACCATATTTAGCA+TGG - Chr6:16552446-16552465 None:intergenic 30.0%
ACATAAAATATGTAAGGTCC+GGG + Chr6:16550735-16550754 MsG0680031241.01.T01:intron 30.0%
ACATGTCTTAGTGTTACAAA+TGG + Chr6:16555839-16555858 MsG0680031241.01.T01:three_prime_UTR 30.0%
ACATGTTAATACCTAGACAA+TGG - Chr6:16555825-16555844 None:intergenic 30.0%
ACTTGAGAAAAACGTCAATT+TGG + Chr6:16550138-16550157 MsG0680031241.01.T01:intron 30.0%
ACTTTCTAATTTCAACCTGT+GGG + Chr6:16552743-16552762 MsG0680031241.01.T01:CDS 30.0%
AGAAATGTGAAAAAGGCAAA+GGG - Chr6:16554592-16554611 None:intergenic 30.0%
AGGAGATGACCATAATAATT+AGG + Chr6:16551696-16551715 MsG0680031241.01.T01:intron 30.0%
ATTCTTTACCTACTTCATTC+TGG + Chr6:16554177-16554196 MsG0680031241.01.T01:intron 30.0%
ATTGAACAATGATTCTGCAA+TGG - Chr6:16552597-16552616 None:intergenic 30.0%
CAGATACTAAAAAACCGATT+TGG - Chr6:16553111-16553130 None:intergenic 30.0%
CATACAAACAAAGGACAATT+TGG - Chr6:16554663-16554682 None:intergenic 30.0%
CATGACAATATAGATATCAG+GGG - Chr6:16555592-16555611 None:intergenic 30.0%
CCTCCAATAAAAACACTATT+TGG - Chr6:16551382-16551401 None:intergenic 30.0%
CTAAGTTGTTTATCCAAACA+AGG + Chr6:16551856-16551875 MsG0680031241.01.T01:intron 30.0%
CTTTATTACTTCGTATTACC+AGG - Chr6:16550038-16550057 None:intergenic 30.0%
GAAAAAGGTTATTGAGTATG+TGG + Chr6:16553524-16553543 MsG0680031241.01.T01:intron 30.0%
GAGATGACCATAATAATTAG+GGG + Chr6:16551698-16551717 MsG0680031241.01.T01:intron 30.0%
GAGGACTAATTTGAGTATTT+AGG + Chr6:16551073-16551092 MsG0680031241.01.T01:intron 30.0%
GATCTTAGTGTTTATTATGG+AGG + Chr6:16551054-16551073 MsG0680031241.01.T01:intron 30.0%
GCATGACAATATAGATATCA+GGG - Chr6:16555593-16555612 None:intergenic 30.0%
GGAATCTTGGAAAGATTATA+TGG - Chr6:16552425-16552444 None:intergenic 30.0%
GGAGATGACCATAATAATTA+GGG + Chr6:16551697-16551716 MsG0680031241.01.T01:intron 30.0%
GGAGTTATATAACTTACCAA+CGG + Chr6:16553623-16553642 MsG0680031241.01.T01:CDS 30.0%
GTATTCATGAAAAGGTGATT+GGG + Chr6:16552562-16552581 MsG0680031241.01.T01:intron 30.0%
GTTTGGATAAACAACTTAGT+TGG - Chr6:16551855-16551874 None:intergenic 30.0%
TAAATAAGTTCTGCTATGCT+GGG + Chr6:16553369-16553388 MsG0680031241.01.T01:CDS 30.0%
TATATATCAAATGCGGCATA+TGG + Chr6:16555117-16555136 MsG0680031241.01.T01:intron 30.0%
TATGAAGATATGATGCTTGA+TGG + Chr6:16552008-16552027 MsG0680031241.01.T01:CDS 30.0%
TATGTTGTCAACATGCAATA+GGG - Chr6:16552648-16552667 None:intergenic 30.0%
TCCACAACAGTTTATGAAAA+TGG + Chr6:16550670-16550689 MsG0680031241.01.T01:intron 30.0%
TGCATGACAATATAGATATC+AGG - Chr6:16555594-16555613 None:intergenic 30.0%
TGTATTCATGAAAAGGTGAT+TGG + Chr6:16552561-16552580 MsG0680031241.01.T01:intron 30.0%
TTAAATAAGTTCTGCTATGC+TGG + Chr6:16553368-16553387 MsG0680031241.01.T01:CDS 30.0%
TTAAGCTGTTTATCCAAACA+AGG + Chr6:16550868-16550887 MsG0680031241.01.T01:intron 30.0%
TTAATAAGAGATAAGCAAGG+TGG - Chr6:16556430-16556449 None:intergenic 30.0%
TTAGTGTTACAAATGGTGTA+TGG + Chr6:16555846-16555865 MsG0680031241.01.T01:three_prime_UTR 30.0%
TTCATTCTTTCCTTCACTTA+GGG + Chr6:16553186-16553205 MsG0680031241.01.T01:intron 30.0%
TTCTGTGCGATATTTAAATC+TGG + Chr6:16554079-16554098 MsG0680031241.01.T01:intron 30.0%
TTTAGAGAGCTACCATTAAA+AGG - Chr6:16554272-16554291 None:intergenic 30.0%
TTTCATTCTTTCCTTCACTT+AGG + Chr6:16553185-16553204 MsG0680031241.01.T01:intron 30.0%
! ACAAAAATGGGCTTAAATCA+GGG - Chr6:16555088-16555107 None:intergenic 30.0%
! ACTCACGTTTTATATTCTCA+AGG + Chr6:16551328-16551347 MsG0680031241.01.T01:intron 30.0%
! ATGATAGAATGCATGTTTTC+AGG - Chr6:16555667-16555686 None:intergenic 30.0%
! ATTAATCAATGCACTGGTAA+TGG - Chr6:16555772-16555791 None:intergenic 30.0%
! GTATGGTTGATGTCTAATTT+CGG + Chr6:16555520-16555539 MsG0680031241.01.T01:intron 30.0%
! TAAAAAAGCAATGCCTTGTT+TGG - Chr6:16551872-16551891 None:intergenic 30.0%
! TACAAAAATGGGCTTAAATC+AGG - Chr6:16555089-16555108 None:intergenic 30.0%
! TCCATTTTCATAAACTGTTG+TGG - Chr6:16550674-16550693 None:intergenic 30.0%
!! ACTTTCATGCTTTTTAAGGA+TGG - Chr6:16551784-16551803 None:intergenic 30.0%
!! CAAATGGGTTGTTACATATA+GGG + Chr6:16554812-16554831 MsG0680031241.01.T01:intron 30.0%
!! CCAAATAGTGTTTTTATTGG+AGG + Chr6:16551379-16551398 MsG0680031241.01.T01:intron 30.0%
!! CGACTATTTTAGAGAACTTA+TGG + Chr6:16551143-16551162 MsG0680031241.01.T01:intron 30.0%
!! GGACCAAATAGTGTTTTTAT+TGG + Chr6:16551376-16551395 MsG0680031241.01.T01:intron 30.0%
!! TACTCTCATATTGATGATGT+AGG + Chr6:16552708-16552727 MsG0680031241.01.T01:intron 30.0%
!! TCAAATGGGTTGTTACATAT+AGG + Chr6:16554811-16554830 MsG0680031241.01.T01:intron 30.0%
!! TGTTTTTGTATTTCCTGAAG+GGG + Chr6:16554861-16554880 MsG0680031241.01.T01:intron 30.0%
!!! AAACTGTTATTTTTCGCGAT+CGG + Chr6:16553947-16553966 MsG0680031241.01.T01:intron 30.0%
!!! CTTTCATACCTGTTTTAAGA+GGG + Chr6:16555214-16555233 MsG0680031241.01.T01:intron 30.0%
!!! TCATACAAGTTTTTTGAACC+TGG + Chr6:16556000-16556019 MsG0680031241.01.T01:three_prime_UTR 30.0%
!!! TCCATTTTCATTTTTGGTAG+TGG - Chr6:16550774-16550793 None:intergenic 30.0%
!!! TTTTTTCCCTTCATTTTTGC+AGG + Chr6:16549567-16549586 MsG0680031241.01.T01:intron 30.0%
AAAACCTGTCTACAAGTAGA+TGG - Chr6:16552809-16552828 None:intergenic 35.0%
AAATGCAACTCAATCCAAAC+CGG - Chr6:16551100-16551119 None:intergenic 35.0%
AAATGTGAAAAAGGCAAAGG+GGG - Chr6:16554590-16554609 None:intergenic 35.0%
AACAAGCTCAAAACAGCTTA+AGG - Chr6:16551187-16551206 None:intergenic 35.0%
AACCATCATGCATGCTATAA+AGG - Chr6:16554459-16554478 None:intergenic 35.0%
AAGCCTACCCCTAATTATTA+TGG - Chr6:16551708-16551727 None:intergenic 35.0%
AAGGGAATGAAAAGTTTCAC+GGG - Chr6:16552045-16552064 None:intergenic 35.0%
AATACAAAGTCTACAGCCTT+TGG - Chr6:16552511-16552530 None:intergenic 35.0%
ACTTCTTGAAATGCTGGAAA+AGG + Chr6:16555557-16555576 MsG0680031241.01.T01:CDS 35.0%
AGAGTTTGCAACACTTTATG+GGG - Chr6:16556235-16556254 None:intergenic 35.0%
AGATTCCATGCTAAATATGG+TGG + Chr6:16552438-16552457 MsG0680031241.01.T01:intron 35.0%
ATAACAAGTTCAGAGATTGC+TGG - Chr6:16553498-16553517 None:intergenic 35.0%
ATGAATTGCAACCAACAGAA+GGG - Chr6:16556095-16556114 None:intergenic 35.0%
ATGTTGTCAACATGCAATAG+GGG - Chr6:16552647-16552666 None:intergenic 35.0%
CAAGGACCAAATGAAAATCA+TGG + Chr6:16552112-16552131 MsG0680031241.01.T01:CDS 35.0%
CAAGGGAATGAAAAGTTTCA+CGG - Chr6:16552046-16552065 None:intergenic 35.0%
CAGATGTAGGTTTGTACATT+TGG - Chr6:16552944-16552963 None:intergenic 35.0%
CATAAAATATGTAAGGTCCG+GGG + Chr6:16550736-16550755 MsG0680031241.01.T01:intron 35.0%
CCAAATGAAAATCATGGGTT+TGG + Chr6:16552118-16552137 MsG0680031241.01.T01:CDS 35.0%
CCAAGATTCCATGCTAAATA+TGG + Chr6:16552435-16552454 MsG0680031241.01.T01:intron 35.0%
CCATATTTAGCATGGAATCT+TGG - Chr6:16552438-16552457 None:intergenic 35.0%
CTATGTTGTCAACATGCAAT+AGG - Chr6:16552649-16552668 None:intergenic 35.0%
CTTATATTTGATTCCCCTTC+AGG - Chr6:16554877-16554896 None:intergenic 35.0%
GAAATCATCAGTAAAAGGTG+TGG - Chr6:16553417-16553436 None:intergenic 35.0%
GAAATGTGAAAAAGGCAAAG+GGG - Chr6:16554591-16554610 None:intergenic 35.0%
GAAGCAATTAATCAATGCAC+TGG - Chr6:16555778-16555797 None:intergenic 35.0%
GAGAGTTTGCAACACTTTAT+GGG - Chr6:16556236-16556255 None:intergenic 35.0%
GAGATAATCCCTCTTAAAAC+AGG - Chr6:16555225-16555244 None:intergenic 35.0%
GCACAGAATCAATTCTTACT+AGG - Chr6:16554067-16554086 None:intergenic 35.0%
GCATCGAAATCATCAGTAAA+AGG - Chr6:16553422-16553441 None:intergenic 35.0%
GCCACTACCAAAAATGAAAA+TGG + Chr6:16550770-16550789 MsG0680031241.01.T01:intron 35.0%
GTCTTACCTGCAAAAATGAA+GGG - Chr6:16549576-16549595 None:intergenic 35.0%
GTGTGCATGTATTCATGAAA+AGG + Chr6:16552554-16552573 MsG0680031241.01.T01:intron 35.0%
TCATTCTTTCCTTCACTTAG+GGG + Chr6:16553187-16553206 MsG0680031241.01.T01:intron 35.0%
TCTAACATAATCCCTTCTGT+TGG + Chr6:16556081-16556100 MsG0680031241.01.T01:three_prime_UTR 35.0%
TCTAATTAAAAAGGGCAACC+CGG + Chr6:16554985-16555004 MsG0680031241.01.T01:intron 35.0%
TCTACACAATAATCGAACTC+AGG + Chr6:16550074-16550093 MsG0680031241.01.T01:intron 35.0%
TCTCGAATGACAATATAACC+AGG - Chr6:16556021-16556040 None:intergenic 35.0%
TGACCATAATAATTAGGGGT+AGG + Chr6:16551702-16551721 MsG0680031241.01.T01:intron 35.0%
TGAGAGTTTGCAACACTTTA+TGG - Chr6:16556237-16556256 None:intergenic 35.0%
TGATTTCATGTCACACAAAC+AGG - Chr6:16554027-16554046 None:intergenic 35.0%
TGCGGATTTCAAGAATGTTA+AGG + Chr6:16553719-16553738 MsG0680031241.01.T01:CDS 35.0%
TGCTTATAATATACTCCCTC+TGG - Chr6:16551831-16551850 None:intergenic 35.0%
TGCTTATAATTGAGTCCAGA+GGG + Chr6:16551813-16551832 MsG0680031241.01.T01:intron 35.0%
TGCTTCACCAATAACTAAAC+TGG - Chr6:16554936-16554955 None:intergenic 35.0%
TGTACAGGCAAAAACTTATG+AGG - Chr6:16552172-16552191 None:intergenic 35.0%
TTACACTTCACTCACTTTAG+AGG + Chr6:16550587-16550606 MsG0680031241.01.T01:intron 35.0%
TTGCTTATAATTGAGTCCAG+AGG + Chr6:16551812-16551831 MsG0680031241.01.T01:intron 35.0%
TTGTTCAAATTCCACTATGC+AGG - Chr6:16553929-16553948 None:intergenic 35.0%
TTTCCTGCCAGTTTAGTTAT+TGG + Chr6:16554926-16554945 MsG0680031241.01.T01:intron 35.0%
! AGAGGCTTAGATTTTCAATC+TGG - Chr6:16555163-16555182 None:intergenic 35.0%
! ATAACTTGCACCAACTAACT+GGG + Chr6:16552292-16552311 MsG0680031241.01.T01:intron 35.0%
! CAAACAATTTGTCCTTTTGG+TGG + Chr6:16550103-16550122 MsG0680031241.01.T01:intron 35.0%
! CAGGAATACAACACTGTTTT+GGG + Chr6:16549699-16549718 MsG0680031241.01.T01:CDS 35.0%
! CATGACACTCTTCCTTTTAA+TGG + Chr6:16554257-16554276 MsG0680031241.01.T01:intron 35.0%
! CCAAACCCATGATTTTCATT+TGG - Chr6:16552121-16552140 None:intergenic 35.0%
! CTAATTTGAGTATTTAGGGC+CGG + Chr6:16551078-16551097 MsG0680031241.01.T01:intron 35.0%
! CTCTGATATAATGCCTTGTT+TGG - Chr6:16550884-16550903 None:intergenic 35.0%
! TCAGGAATACAACACTGTTT+TGG + Chr6:16549698-16549717 MsG0680031241.01.T01:CDS 35.0%
! TCGCAAACAATTTGTCCTTT+TGG + Chr6:16550100-16550119 MsG0680031241.01.T01:intron 35.0%
! TGTTAACTTTTCGGTTCTCA+AGG + Chr6:16550004-16550023 MsG0680031241.01.T01:intron 35.0%
!! AAGAGTGTCATGTAACATTC+TGG - Chr6:16554249-16554268 None:intergenic 35.0%
!! ATGGTTGCTTTGTTTCAACT+AGG - Chr6:16555906-16555925 None:intergenic 35.0%
!! GCTTTCATACCTGTTTTAAG+AGG + Chr6:16555213-16555232 MsG0680031241.01.T01:intron 35.0%
!! GTTCTCTAAAATAGTCGCAA+AGG - Chr6:16551140-16551159 None:intergenic 35.0%
!! TACATTTGGCTTTACTTCCA+TGG - Chr6:16552930-16552949 None:intergenic 35.0%
!! TTCATGCTCGCTTTAAAGTT+AGG + Chr6:16555734-16555753 MsG0680031241.01.T01:three_prime_UTR 35.0%
!! TTCTGATATTGATTTGGTGG+AGG + Chr6:16555282-16555301 MsG0680031241.01.T01:intron 35.0%
!! TTTTAAGAGGGATTATCTCC+TGG + Chr6:16555226-16555245 MsG0680031241.01.T01:intron 35.0%
!!! AACTCATGTAAGGGTGTTTT+TGG - Chr6:16551628-16551647 None:intergenic 35.0%
!!! TTTAGTTTTTAGGGCCTGTT+TGG + Chr6:16551408-16551427 MsG0680031241.01.T01:intron 35.0%
!!! TTTTCATTTTTGGTAGTGGC+CGG - Chr6:16550770-16550789 None:intergenic 35.0%
AATGCTGAGAATGTGATGGT+GGG + Chr6:16553588-16553607 MsG0680031241.01.T01:CDS 40.0%
ACCCATATCTATCAACAGCA+TGG - Chr6:16552210-16552229 None:intergenic 40.0%
AGCCTTTATAGCATGCATGA+TGG + Chr6:16554454-16554473 MsG0680031241.01.T01:intron 40.0%
AGGTTATTGAGTATGTGGAG+AGG + Chr6:16553529-16553548 MsG0680031241.01.T01:intron 40.0%
ATATGATGCTTGATGGAGTG+AGG + Chr6:16552015-16552034 MsG0680031241.01.T01:CDS 40.0%
CAGCAGCATTAAATGCAGTA+TGG - Chr6:16553701-16553720 None:intergenic 40.0%
CAGTGAGTTGTTCACTTTAG+AGG - Chr6:16550449-16550468 None:intergenic 40.0%
CATGAACAGTCATACAGACA+TGG - Chr6:16553754-16553773 None:intergenic 40.0%
CATGAATTGCAACCAACAGA+AGG - Chr6:16556096-16556115 None:intergenic 40.0%
CTGCTGGAACATTGTAGAAT+CGG - Chr6:16549644-16549663 None:intergenic 40.0%
CTTCAAATGACTGTAGCCAA+AGG + Chr6:16552492-16552511 MsG0680031241.01.T01:intron 40.0%
GAAATGCAAGAACTCTGATC+AGG + Chr6:16552765-16552784 MsG0680031241.01.T01:CDS 40.0%
GAATGAAAAGTTTCACGGGT+TGG - Chr6:16552041-16552060 None:intergenic 40.0%
GATTAATGAGCTCCACCAAA+AGG - Chr6:16550118-16550137 None:intergenic 40.0%
GCAAAGGGGGTTTACATATA+GGG - Chr6:16554577-16554596 None:intergenic 40.0%
GCAGCAATATGACATACACT+CGG - Chr6:16553003-16553022 None:intergenic 40.0%
GCAGTATGGTATGCAACAAA+GGG - Chr6:16553687-16553706 None:intergenic 40.0%
GCATGATGCTTTCTTCTTCA+AGG + Chr6:16552094-16552113 MsG0680031241.01.T01:CDS 40.0%
GGTCTTACCTGCAAAAATGA+AGG - Chr6:16549577-16549596 None:intergenic 40.0%
GTGCTATAGTGTTAGTGTTG+CGG + Chr6:16553815-16553834 MsG0680031241.01.T01:intron 40.0%
TACGAAATACCCCTAAGTGA+AGG - Chr6:16553199-16553218 None:intergenic 40.0%
TACTGCATTTAATGCTGCTG+CGG + Chr6:16553701-16553720 MsG0680031241.01.T01:CDS 40.0%
TACTGGCATAAACACTTGTG+AGG + Chr6:16550387-16550406 MsG0680031241.01.T01:intron 40.0%
TCACCAATAACTAAACTGGC+AGG - Chr6:16554932-16554951 None:intergenic 40.0%
TGCAGTATGGTATGCAACAA+AGG - Chr6:16553688-16553707 None:intergenic 40.0%
TGGGTTGTTACATATAGGGA+CGG + Chr6:16554816-16554835 MsG0680031241.01.T01:intron 40.0%
TGTCTAATTTCGGCAGTTGA+CGG + Chr6:16555530-16555549 MsG0680031241.01.T01:intron 40.0%
TGTTGTCAACATGCAATAGG+GGG - Chr6:16552646-16552665 None:intergenic 40.0%
TTGTTACATATAGGGACGGA+GGG + Chr6:16554820-16554839 MsG0680031241.01.T01:intron 40.0%
TTTGGAGGAGATGAAATCCA+TGG + Chr6:16552910-16552929 MsG0680031241.01.T01:CDS 40.0%
! ACTTTTCGGTTCTCAAGGAA+AGG + Chr6:16550009-16550028 MsG0680031241.01.T01:intron 40.0%
! AGCCATGCTGTTGATAGATA+TGG + Chr6:16552205-16552224 MsG0680031241.01.T01:intron 40.0%
! CTTTTCGGTTCTCAAGGAAA+GGG + Chr6:16550010-16550029 MsG0680031241.01.T01:intron 40.0%
! GATAACTTGCACCAACTAAC+TGG + Chr6:16552291-16552310 MsG0680031241.01.T01:intron 40.0%
! GCCATGCTGTTGATAGATAT+GGG + Chr6:16552206-16552225 MsG0680031241.01.T01:intron 40.0%
! TGTGTTTTCTGTAAGAGCAG+TGG + Chr6:16555059-16555078 MsG0680031241.01.T01:intron 40.0%
! TTCCAGCAGAAGAGTATAAC+AGG + Chr6:16549655-16549674 MsG0680031241.01.T01:CDS 40.0%
! TTTTCGGTTCTCAAGGAAAG+GGG + Chr6:16550011-16550030 MsG0680031241.01.T01:intron 40.0%
!! AATAGTCGCAAAGGTGCTTA+TGG - Chr6:16551131-16551150 None:intergenic 40.0%
!! ACTTTTCATTCCCTTGCTGT+TGG + Chr6:16552050-16552069 MsG0680031241.01.T01:CDS 40.0%
!! TGTCTAAGAACTTGCTACTC+TGG + Chr6:16551513-16551532 MsG0680031241.01.T01:intron 40.0%
!!! TTTCATTTTTGGTAGTGGCC+GGG - Chr6:16550769-16550788 None:intergenic 40.0%
ACCCATTTCGCACTGCAAAA+CGG - Chr6:16549599-16549618 None:intergenic 45.0%
AGAGTTCTTGCATTTCCCAC+AGG - Chr6:16552761-16552780 None:intergenic 45.0%
AGGGGGTTTACATATAGGGA+CGG - Chr6:16554573-16554592 None:intergenic 45.0%
ATGTGGAGAGGTCAAAGCAA+TGG + Chr6:16553541-16553560 MsG0680031241.01.T01:CDS 45.0%
ATTTAATCCCAGACCAGCTG+CGG - Chr6:16553354-16553373 None:intergenic 45.0%
CAACATGCAATAGGGGGATA+TGG - Chr6:16552640-16552659 None:intergenic 45.0%
CAACGGCAGAATACGTTACT+AGG + Chr6:16553640-16553659 MsG0680031241.01.T01:CDS 45.0%
CAATGCTGAGAATGTGATGG+TGG + Chr6:16553587-16553606 MsG0680031241.01.T01:CDS 45.0%
CACCATCACATTCTCAGCAT+TGG - Chr6:16553589-16553608 None:intergenic 45.0%
CCACGATCAAAGTGAATGAG+AGG - Chr6:16555181-16555200 None:intergenic 45.0%
CCTCTCATTCACTTTGATCG+TGG + Chr6:16555178-16555197 MsG0680031241.01.T01:intron 45.0%
CGAGTAAGCCAGAATGAAGT+AGG - Chr6:16554188-16554207 None:intergenic 45.0%
CTAGTAACGTATTCTGCCGT+TGG - Chr6:16553642-16553661 None:intergenic 45.0%
CTCCTGTTATACTCTTCTGC+TGG - Chr6:16549660-16549679 None:intergenic 45.0%
GAACAAGCAACCCAGTTAGT+TGG - Chr6:16552305-16552324 None:intergenic 45.0%
GAACTTATGGAAACGGCTCA+TGG + Chr6:16551156-16551175 MsG0680031241.01.T01:intron 45.0%
GATCGGTGGTTGACAATTGT+AGG + Chr6:16553964-16553983 MsG0680031241.01.T01:intron 45.0%
GGAGAGTTGTTGTCATCTAG+CGG + Chr6:16553793-16553812 MsG0680031241.01.T01:intron 45.0%
GGATGCACTTCTTGAAATGC+TGG + Chr6:16555551-16555570 MsG0680031241.01.T01:CDS 45.0%
GGCAAAGGGGGTTTACATAT+AGG - Chr6:16554578-16554597 None:intergenic 45.0%
GGTTTACATATAGGGACGGA+GGG - Chr6:16554569-16554588 None:intergenic 45.0%
GTTCTCTCAATGCTCAACGA+AGG + Chr6:16549721-16549740 MsG0680031241.01.T01:CDS 45.0%
GTTGTTACATATAGGGACGG+AGG + Chr6:16554819-16554838 MsG0680031241.01.T01:intron 45.0%
TCTAGTGCATGCCATTGTCT+AGG + Chr6:16555811-16555830 MsG0680031241.01.T01:three_prime_UTR 45.0%
TCTCATGGATCCAACAGCAA+GGG - Chr6:16552063-16552082 None:intergenic 45.0%
TGAGCTTAGCTCAGTTGGTT+AGG + Chr6:16550707-16550726 MsG0680031241.01.T01:intron 45.0%
TGCATGTAGCAAGCAGATGT+AGG - Chr6:16552957-16552976 None:intergenic 45.0%
! TAGCCCACTGAAATTGACTC+CGG - Chr6:16555357-16555376 None:intergenic 45.0%
! TTGAGTATTTAGGGCCGGTT+TGG + Chr6:16551083-16551102 MsG0680031241.01.T01:intron 45.0%
!! ACTTCATTCTGGCTTACTCG+TGG + Chr6:16554188-16554207 MsG0680031241.01.T01:intron 45.0%
!! ATGCATTCTAGAGCCTCTCA+TGG - Chr6:16552078-16552097 None:intergenic 45.0%
!! CTTCATTCTGGCTTACTCGT+GGG + Chr6:16554189-16554208 MsG0680031241.01.T01:intron 45.0%
!!! CTGTTATTTTTCGCGATCGG+TGG + Chr6:16553950-16553969 MsG0680031241.01.T01:intron 45.0%
!!! TTCATTTTTGGTAGTGGCCG+GGG - Chr6:16550768-16550787 None:intergenic 45.0%
!! AATTATCTTAAAATTAAAAA+TGG + Chr6:16551297-16551316 MsG0680031241.01.T01:intron 5.0%
!!! ATTATTCATTTTTAATTTTT+AGG + Chr6:16549814-16549833 MsG0680031241.01.T01:intron 5.0%
!!! TTAATTTTAAGATAATTTTA+GGG - Chr6:16551294-16551313 None:intergenic 5.0%
!!! TTTAATTTTAAGATAATTTT+AGG - Chr6:16551295-16551314 None:intergenic 5.0%
AGCGAGCATGAATTCCAGCT+TGG - Chr6:16555726-16555745 None:intergenic 50.0%
ATCACGGACAATTGCATGCC+TGG - Chr6:16553327-16553346 None:intergenic 50.0%
ATCGAACCTGAGACCTTGAG+AGG - Chr6:16555329-16555348 None:intergenic 50.0%
CCCATTTCGCACTGCAAAAC+GGG - Chr6:16549598-16549617 None:intergenic 50.0%
CGCCAATGCTGAGAATGTGA+TGG + Chr6:16553584-16553603 MsG0680031241.01.T01:CDS 50.0%
CTCTAGCATAGCCTGCATAG+TGG + Chr6:16553915-16553934 MsG0680031241.01.T01:intron 50.0%
CTCTCATGGATCCAACAGCA+AGG - Chr6:16552064-16552083 None:intergenic 50.0%
CTTGGAATGTGCTCCTCTCA+AGG + Chr6:16555313-16555332 MsG0680031241.01.T01:intron 50.0%
GAACTCTGATCAGGCTGTTC+AGG + Chr6:16552774-16552793 MsG0680031241.01.T01:CDS 50.0%
GAATACGTTACTAGGCGTGG+AGG + Chr6:16553648-16553667 MsG0680031241.01.T01:CDS 50.0%
GCAGAATACGTTACTAGGCG+TGG + Chr6:16553645-16553664 MsG0680031241.01.T01:CDS 50.0%
GGGTTTACATATAGGGACGG+AGG - Chr6:16554570-16554589 None:intergenic 50.0%
GTCGCCATCTACTTGTAGAC+AGG + Chr6:16552802-16552821 MsG0680031241.01.T01:intron 50.0%
GTCTACAAGTAGATGGCGAC+AGG - Chr6:16552802-16552821 None:intergenic 50.0%
TCCCCGGAGTCAATTTCAGT+GGG + Chr6:16555351-16555370 MsG0680031241.01.T01:intron 50.0%
TGCGAAATGGGTCACTTCCA+CGG + Chr6:16549607-16549626 MsG0680031241.01.T01:CDS 50.0%
! ACCCGTTTTGCAGTGCGAAA+TGG + Chr6:16549594-16549613 MsG0680031241.01.T01:CDS 50.0%
! AGCCCACTGAAATTGACTCC+GGG - Chr6:16555356-16555375 None:intergenic 50.0%
! CCCGTTTTGCAGTGCGAAAT+GGG + Chr6:16549595-16549614 MsG0680031241.01.T01:CDS 50.0%
! CTTGAGAGGAGCACATTCCA+AGG - Chr6:16555315-16555334 None:intergenic 50.0%
! TTGGTGGAGGTTTGAGACCT+TGG + Chr6:16555295-16555314 MsG0680031241.01.T01:intron 50.0%
!! ATTCTGGCTTACTCGTGGGA+AGG + Chr6:16554193-16554212 MsG0680031241.01.T01:intron 50.0%
!! CTTGCTGTTGGATCCATGAG+AGG + Chr6:16552062-16552081 MsG0680031241.01.T01:CDS 50.0%
!! GATGGTGGGTGTTACTGATG+AGG + Chr6:16553602-16553621 MsG0680031241.01.T01:CDS 50.0%
!! TTCTGGCTTACTCGTGGGAA+GGG + Chr6:16554194-16554213 MsG0680031241.01.T01:intron 50.0%
ACACTCGGTCTATGCGTCCT+TGG - Chr6:16552988-16553007 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+TGG + Chr6:16555011-16555030 MsG0680031241.01.T01:intron 55.0%
CACTCGGTCTATGCGTCCTT+GGG - Chr6:16552987-16553006 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - Chr6:16550705-16550724 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + Chr6:16550702-16550721 MsG0680031241.01.T01:intron 55.0%
CTAAAGCTCCCGCATACGCT+GGG + Chr6:16555012-16555031 MsG0680031241.01.T01:intron 55.0%
CTACATGCATGTGCAGCCCA+AGG + Chr6:16552968-16552987 MsG0680031241.01.T01:CDS 55.0%
CTCCCCGGAGTCAATTTCAG+TGG + Chr6:16555350-16555369 MsG0680031241.01.T01:intron 55.0%
GACCAGCTGCGGTCATATCA+CGG - Chr6:16553343-16553362 None:intergenic 55.0%
GCGAAATGGGTCACTTCCAC+GGG + Chr6:16549608-16549627 MsG0680031241.01.T01:CDS 55.0%
GGCGTGGAGGATTCTTGAAC+AGG + Chr6:16553661-16553680 MsG0680031241.01.T01:CDS 55.0%
GTCTCAGGTTCGATTCTCCC+CGG + Chr6:16555335-16555354 MsG0680031241.01.T01:intron 55.0%
GTTCTCAAGGAAAGGGGTCC+TGG + Chr6:16550017-16550036 MsG0680031241.01.T01:intron 55.0%
TGATATGACCGCAGCTGGTC+TGG + Chr6:16553343-16553362 MsG0680031241.01.T01:CDS 55.0%
TGGGTCACTTCCACGGGTTT+CGG + Chr6:16549614-16549633 MsG0680031241.01.T01:CDS 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG + Chr6:16555320-16555339 MsG0680031241.01.T01:intron 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - Chr6:16555007-16555026 None:intergenic 55.0%
! GATATGACCGCAGCTGGTCT+GGG + Chr6:16553344-16553363 MsG0680031241.01.T01:CDS 55.0%
! GCCCACTGAAATTGACTCCG+GGG - Chr6:16555355-16555374 None:intergenic 55.0%
AAGGTCCGGGGTTCAAACCC+CGG + Chr6:16550748-16550767 MsG0680031241.01.T01:intron 60.0%
AATCCCGGACCCAGCGTATG+CGG - Chr6:16555024-16555043 None:intergenic 60.0%
GGGTCACTTCCACGGGTTTC+GGG + Chr6:16549615-16549634 MsG0680031241.01.T01:CDS 60.0%
GGTCACTTCCACGGGTTTCG+GGG + Chr6:16549616-16549635 MsG0680031241.01.T01:CDS 60.0%
GTCCGTGATATGACCGCAGC+TGG + Chr6:16553338-16553357 MsG0680031241.01.T01:CDS 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - Chr6:16555006-16555025 None:intergenic 60.0%
AATCGGAGCCCCGAAACCCG+TGG - Chr6:16549627-16549646 None:intergenic 65.0%
AGTGGCCGGGGTTTGAACCC+CGG - Chr6:16550756-16550775 None:intergenic 65.0%
ATCCCGGACCCAGCGTATGC+GGG - Chr6:16555023-16555042 None:intergenic 65.0%
CTCCCGCATACGCTGGGTCC+GGG + Chr6:16555018-16555037 MsG0680031241.01.T01:intron 70.0%
GCTCCCGCATACGCTGGGTC+CGG + Chr6:16555017-16555036 MsG0680031241.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 16549416 16556465 16549416 ID=MsG0680031241.01;Name=MsG0680031241.01
Chr6 mRNA 16549416 16556465 16549416 ID=MsG0680031241.01.T01;Parent=MsG0680031241.01;Name=MsG0680031241.01.T01;_AED=0.46;_eAED=0.46;_QI=65|1|1|1|0.85|0.87|8|839|304
Chr6 exon 16549416 16549505 16549416 ID=MsG0680031241.01.T01:exon:4461;Parent=MsG0680031241.01.T01
Chr6 exon 16549589 16549742 16549589 ID=MsG0680031241.01.T01:exon:4462;Parent=MsG0680031241.01.T01
Chr6 exon 16551986 16552148 16551986 ID=MsG0680031241.01.T01:exon:4463;Parent=MsG0680031241.01.T01
Chr6 exon 16552730 16552795 16552730 ID=MsG0680031241.01.T01:exon:4464;Parent=MsG0680031241.01.T01
Chr6 exon 16552908 16553005 16552908 ID=MsG0680031241.01.T01:exon:4465;Parent=MsG0680031241.01.T01
Chr6 exon 16553328 16553445 16553328 ID=MsG0680031241.01.T01:exon:4466;Parent=MsG0680031241.01.T01
Chr6 exon 16553531 16553740 16553531 ID=MsG0680031241.01.T01:exon:4467;Parent=MsG0680031241.01.T01
Chr6 exon 16555546 16556465 16555546 ID=MsG0680031241.01.T01:exon:4468;Parent=MsG0680031241.01.T01
Chr6 five_prime_UTR 16549416 16549480 16549416 ID=MsG0680031241.01.T01:five_prime_utr;Parent=MsG0680031241.01.T01
Chr6 CDS 16549481 16549505 16549481 ID=MsG0680031241.01.T01:cds;Parent=MsG0680031241.01.T01
Chr6 CDS 16549589 16549742 16549589 ID=MsG0680031241.01.T01:cds;Parent=MsG0680031241.01.T01
Chr6 CDS 16551986 16552148 16551986 ID=MsG0680031241.01.T01:cds;Parent=MsG0680031241.01.T01
Chr6 CDS 16552730 16552795 16552730 ID=MsG0680031241.01.T01:cds;Parent=MsG0680031241.01.T01
Chr6 CDS 16552908 16553005 16552908 ID=MsG0680031241.01.T01:cds;Parent=MsG0680031241.01.T01
Chr6 CDS 16553328 16553445 16553328 ID=MsG0680031241.01.T01:cds;Parent=MsG0680031241.01.T01
Chr6 CDS 16553531 16553740 16553531 ID=MsG0680031241.01.T01:cds;Parent=MsG0680031241.01.T01
Chr6 CDS 16555546 16555626 16555546 ID=MsG0680031241.01.T01:cds;Parent=MsG0680031241.01.T01
Chr6 three_prime_UTR 16555627 16556465 16555627 ID=MsG0680031241.01.T01:three_prime_utr;Parent=MsG0680031241.01.T01
Gene Sequence

>MsG0680031241.01.T01

ATGAAATTTCTTCAATCTCTCTTAGGTAAGACCCGTTTTGCAGTGCGAAATGGGTCACTTCCACGGGTTTCGGGGCTCCGATTCTACAATGTTCCAGCAGAAGAGTATAACAGGAGAAACTACGCTAAAAATGTTCAGGAATACAACACTGTTTTGGGTTCTCTCAATGCTCAACGAAGGATTTTTTTGCTGAGAGATGTGTATGAAGATATGATGCTTGATGGAGTGAGGCCAACCCGTGAAACTTTTCATTCCCTTGCTGTTGGATCCATGAGAGGCTCTAGAATGCATGATGCTTTCTTCTTCAAGGACCAAATGAAAATCATGGGTTTGGTTCCTGATGTTACTTTCTACAACTTTCTAATTTCAACCTGTGGGAAATGCAAGAACTCTGATCAGGCTGTTCAGATTTTGGAGGAGATGAAATCCATGGAAGTAAAGCCAAATGTACAAACCTACATCTGCTTGCTACATGCATGTGCAGCCCAAGGACGCATAGACCGAGTGCATGCAATTGTCCGTGATATGACCGCAGCTGGTCTGGGATTAAATAAGTTCTGCTATGCTGGGCTTATAGTTGCACACCAGAACAAAACACCTTTTACTGATGATTTCGATGCAAAAGTTATTGAGTATGTGGAGAGGTCAAAGCAATGGACTTCAGTAGAAACTGACAGCGCCAATGCTGAGAATGTGATGGTGGGTGTTACTGATGAGGAGTTATATAACTTACCAACGGCAGAATACGTTACTAGGCGTGGAGGATTCTTGAACAGGCCCTTTGTTGCATACCATACTGCATTTAATGCTGCTGCGGATTTCAAGAATGTTAAGTTGACGGATGCACTTCTTGAAATGCTGGAAAAGGAGAAGAAAACCCCTGATATCTATATTGTCATGCAAGTAATTAGGTAA
Protein sequence

>MsG0680031241.01.T01

MKFLQSLLGKTRFAVRNGSLPRVSGLRFYNVPAEEYNRRNYAKNVQEYNTVLGSLNAQRRIFLLRDVYEDMMLDGVRPTRETFHSLAVGSMRGSRMHDAFFFKDQMKIMGLVPDVTFYNFLISTCGKCKNSDQAVQILEEMKSMEVKPNVQTYICLLHACAAQGRIDRVHAIVRDMTAAGLGLNKFCYAGLIVAHQNKTPFTDDFDAKVIEYVERSKQWTSVETDSANAENVMVGVTDEELYNLPTAEYVTRRGGFLNRPFVAYHTAFNAAADFKNVKLTDALLEMLEKEKKTPDIYIVMQVIR*