AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040949.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040949.01.T01 MTR_7g101760 96.939 294 4 2 1 294 1 289 0.0 583
MsG0780040949.01.T01 MTR_7g101760 99.578 237 1 0 58 294 1 237 3.01e-179 494
MsG0780040949.01.T01 MTR_7g101760 96.135 207 5 2 1 206 1 205 1.85e-144 404
MsG0780040949.01.T01 MTR_7g101760 94.686 207 5 3 1 206 1 202 2.85e-140 394
MsG0780040949.01.T02 MTR_7g101760 96.939 294 4 2 1 294 1 289 0.0 583
MsG0780040949.01.T02 MTR_7g101760 99.578 237 1 0 58 294 1 237 3.01e-179 494
MsG0780040949.01.T02 MTR_7g101760 96.135 207 5 2 1 206 1 205 1.85e-144 404
MsG0780040949.01.T02 MTR_7g101760 94.686 207 5 3 1 206 1 202 2.85e-140 394
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040949.01.T01 AT2G37020 69.737 228 69 0 67 294 81 308 8.22e-116 336
MsG0780040949.01.T01 AT2G37020 69.737 228 69 0 67 294 82 309 8.69e-116 336
MsG0780040949.01.T01 AT2G37020 66.216 148 50 0 67 214 82 229 1.38e-64 203
MsG0780040949.01.T02 AT2G37020 69.737 228 69 0 67 294 81 308 8.22e-116 336
MsG0780040949.01.T02 AT2G37020 69.737 228 69 0 67 294 82 309 8.69e-116 336
MsG0780040949.01.T02 AT2G37020 66.216 148 50 0 67 214 82 229 1.38e-64 203

Find 16 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCACAAAGGCTTTGAAAA+AGG 0.268821 7:+84689264 None:intergenic
TTACTACGATGTTAAGATTA+GGG 0.288887 7:-84689483 MsG0780040949.01.T01:CDS
AGAAATAACTGTAGATATAT+AGG 0.337960 7:+84689344 None:intergenic
TTTACTACGATGTTAAGATT+AGG 0.364173 7:-84689484 MsG0780040949.01.T01:CDS
ATCTGCAACTGACTCACCAT+TGG 0.480540 7:+84689451 None:intergenic
TCTGCAACTGACTCACCATT+GGG 0.512525 7:+84689452 None:intergenic
GGTGAGTCAGTTGCAGATCA+AGG 0.527024 7:-84689446 MsG0780040949.01.T01:CDS
TTGCAGATCAAGGAATCAAA+GGG 0.552447 7:-84689436 MsG0780040949.01.T01:CDS
TTGAAGTTTATTAATGCTTG+CGG 0.553990 7:-84689194 MsG0780040949.01.T01:three_prime_UTR
GTTGCAGATCAAGGAATCAA+AGG 0.555080 7:-84689437 MsG0780040949.01.T01:CDS
TATTTCTAATTGTTGATGAA+AGG 0.555152 7:-84689328 MsG0780040949.01.T01:intron
TTGTTGATGAAAGGAAGTAA+AGG 0.567859 7:-84689319 MsG0780040949.01.T01:intron
ATTAGGGGTTTGACACCCAA+TGG 0.581889 7:-84689467 MsG0780040949.01.T01:CDS
TACTACGATGTTAAGATTAG+GGG 0.597934 7:-84689482 MsG0780040949.01.T01:CDS
TATGTCAGACTAGATAGACT+TGG 0.619804 7:-84689402 MsG0780040949.01.T01:three_prime_UTR
AGAGTTCTAAGTTCTCACAA+AGG 0.694984 7:+84689252 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAAATTTATATTATTT+GGG - Chr7:84690307-84690326 MsG0780040949.01.T01:intron 0.0%
!!! TTTTATAAATTTATATTATT+TGG - Chr7:84690306-84690325 MsG0780040949.01.T01:intron 0.0%
!! ATGATTATCATAAAAAATAT+GGG - Chr7:84691694-84691713 MsG0780040949.01.T01:intron 10.0%
!! TATGATAATCATATTTAAAT+TGG + Chr7:84691686-84691705 None:intergenic 10.0%
!! TATGATTATCATAAAAAATA+TGG - Chr7:84691693-84691712 MsG0780040949.01.T01:intron 10.0%
!!! AAAAAATATGTGATTTTATT+CGG - Chr7:84689679-84689698 MsG0780040949.01.T01:intron 10.0%
!! AAATGTAATTGCTTAAATTA+GGG + Chr7:84689542-84689561 None:intergenic 15.0%
!! ATAAATTTATATTATTTGGG+TGG - Chr7:84690310-84690329 MsG0780040949.01.T01:intron 15.0%
!! TAAATTTATATTATTTGGGT+GGG - Chr7:84690311-84690330 MsG0780040949.01.T01:intron 15.0%
!!! ATAGTCAATTAAAATTTTAC+AGG - Chr7:84692134-84692153 MsG0780040949.01.T01:CDS 15.0%
!!! ATATTTTACATCTAAAGAAA+GGG + Chr7:84693128-84693147 None:intergenic 15.0%
!!! CTTTTTTAATCTATAACAAA+CGG - Chr7:84689848-84689867 MsG0780040949.01.T01:CDS 15.0%
!!! TATATTTTACATCTAAAGAA+AGG + Chr7:84693129-84693148 None:intergenic 15.0%
!!! TATTACAATTTGTACATTTT+AGG + Chr7:84690509-84690528 None:intergenic 15.0%
!!! TTTTGCACTTTATTTTTTTT+AGG - Chr7:84691628-84691647 MsG0780040949.01.T01:intron 15.0%
!!! TTTTTTAATCTATAACAAAC+GGG - Chr7:84689849-84689868 MsG0780040949.01.T01:CDS 15.0%
!!! TTTTTTTCTTTTCTTTTTGT+TGG - Chr7:84691358-84691377 MsG0780040949.01.T01:intron 15.0%
!! AAAAAATAAAGTGCAAAAAG+AGG + Chr7:84691626-84691645 None:intergenic 20.0%
!! AATATGATTATCATCTAGAA+AGG - Chr7:84691932-84691951 MsG0780040949.01.T01:intron 20.0%
!! AGAAATAACTGTAGATATAT+AGG + Chr7:84693007-84693026 None:intergenic 20.0%
!! ATAAAACCATGTTATCTTTA+AGG - Chr7:84692361-84692380 MsG0780040949.01.T01:CDS 20.0%
!! GAAATGTAATTGCTTAAATT+AGG + Chr7:84689543-84689562 None:intergenic 20.0%
!! TAATAATTTCAAATTGCAAC+TGG - Chr7:84690711-84690730 MsG0780040949.01.T01:intron 20.0%
!!! AAAAACTTTAAAACATTCCT+TGG + Chr7:84692473-84692492 None:intergenic 20.0%
!!! ATTTATTTAGAGAGTATGTT+TGG - Chr7:84692025-84692044 MsG0780040949.01.T01:intron 20.0%
!!! TATTTCTAATTGTTGATGAA+AGG - Chr7:84693020-84693039 MsG0780040949.01.T01:CDS 20.0%
!!! TCAATAAACTTTGAAGTTAA+TGG - Chr7:84691244-84691263 MsG0780040949.01.T01:intron 20.0%
!!! TTAAATCTTCCAACTTTTTT+TGG - Chr7:84691159-84691178 MsG0780040949.01.T01:intron 20.0%
!!! TTAATGTGATTTTTGACATT+TGG - Chr7:84689915-84689934 MsG0780040949.01.T01:CDS 20.0%
!!! TTTATTGATTTTTGTTATGC+AGG - Chr7:84692176-84692195 MsG0780040949.01.T01:CDS 20.0%
! AAAAGATGTTATCCAAATAG+TGG + Chr7:84692799-84692818 None:intergenic 25.0%
! AACACGAAAACATATACTTA+TGG + Chr7:84689875-84689894 None:intergenic 25.0%
! AATATAAAACCTTCCTACAA+GGG - Chr7:84690525-84690544 MsG0780040949.01.T01:intron 25.0%
! ACCAAGATAATCAAATGATA+TGG - Chr7:84691995-84692014 MsG0780040949.01.T01:intron 25.0%
! ACCATATCATTTGATTATCT+TGG + Chr7:84691999-84692018 None:intergenic 25.0%
! CAAAGATTTACTAGATTACT+AGG + Chr7:84692741-84692760 None:intergenic 25.0%
! CAACTTATTCATAATCACTA+TGG + Chr7:84691321-84691340 None:intergenic 25.0%
! TAATATAAAACCTTCCTACA+AGG - Chr7:84690524-84690543 MsG0780040949.01.T01:intron 25.0%
! TAGAAATGTCCAAAAAAAGT+TGG + Chr7:84691171-84691190 None:intergenic 25.0%
! TATGCATTTCATTATGACAA+AGG - Chr7:84690455-84690474 MsG0780040949.01.T01:intron 25.0%
! TCAACCTGTAAAAAAAAAGT+AGG - Chr7:84692256-84692275 MsG0780040949.01.T01:intron 25.0%
! TGAAGTAAACGTAAACATTA+TGG + Chr7:84691384-84691403 None:intergenic 25.0%
! TGCTAATACAACTATAAATG+TGG + Chr7:84691018-84691037 None:intergenic 25.0%
! TTACTACGATGTTAAGATTA+GGG - Chr7:84692865-84692884 MsG0780040949.01.T01:CDS 25.0%
! TTGAAGTTAATGGTTTATGT+TGG - Chr7:84691254-84691273 MsG0780040949.01.T01:intron 25.0%
! TTGAAGTTTATTAATGCTTG+CGG - Chr7:84693154-84693173 MsG0780040949.01.T01:CDS 25.0%
! TTTAAAGAAGAAGAATGAGA+GGG + Chr7:84689519-84689538 None:intergenic 25.0%
! TTTACTACGATGTTAAGATT+AGG - Chr7:84692864-84692883 MsG0780040949.01.T01:intron 25.0%
! TTTGTTTGAATGAAATGCAT+TGG - Chr7:84691548-84691567 MsG0780040949.01.T01:intron 25.0%
!! AGCTATTGTTCTAAATCAAA+TGG + Chr7:84691852-84691871 None:intergenic 25.0%
!! CGCAATGTTTATAACTATTT+TGG - Chr7:84692289-84692308 MsG0780040949.01.T01:intron 25.0%
!! TATTCTGTCTTTTCTTTTTG+TGG - Chr7:84690068-84690087 MsG0780040949.01.T01:intron 25.0%
!! TCTATCCATTCTAAAAAGAA+GGG - Chr7:84691187-84691206 MsG0780040949.01.T01:intron 25.0%
!! TCTTTTCCTTAAAGATAACA+TGG + Chr7:84692370-84692389 None:intergenic 25.0%
!! TGTTGTTTAAACATCTAACT+GGG - Chr7:84691105-84691124 MsG0780040949.01.T01:intron 25.0%
!! TTCTATCCATTCTAAAAAGA+AGG - Chr7:84691186-84691205 MsG0780040949.01.T01:intron 25.0%
!!! ATCTCCTACTTTTTTTTTAC+AGG + Chr7:84692263-84692282 None:intergenic 25.0%
!!! ATGTATTGCTTATTGATTCA+AGG - Chr7:84689603-84689622 MsG0780040949.01.T01:intron 25.0%
!!! TGTATTGCTTATTGATTCAA+GGG - Chr7:84689604-84689623 MsG0780040949.01.T01:intron 25.0%
!!! TTGTTGTTTAAACATCTAAC+TGG - Chr7:84691104-84691123 MsG0780040949.01.T01:intron 25.0%
!!! TTGTTTTATGTCCAATGAAT+TGG - Chr7:84692202-84692221 MsG0780040949.01.T01:CDS 25.0%
AAAACAAAAGAACTTCATGC+AGG - Chr7:84690555-84690574 MsG0780040949.01.T01:intron 30.0%
AAATCAAATGGTGAAGATGT+CGG + Chr7:84691840-84691859 None:intergenic 30.0%
ACAACAAGGAGAAAAAATGT+TGG + Chr7:84692587-84692606 None:intergenic 30.0%
AGAATCATAGGACTTCATAA+TGG + Chr7:84690386-84690405 None:intergenic 30.0%
AGCAAGACAATCAAATGATA+TGG - Chr7:84691755-84691774 MsG0780040949.01.T01:intron 30.0%
AGCAATACATTGAACATGAA+TGG + Chr7:84689593-84689612 None:intergenic 30.0%
ATAATCACTATGGACATGAA+TGG + Chr7:84691311-84691330 None:intergenic 30.0%
ATTATGTAGAACCAAACTGT+AGG + Chr7:84690101-84690120 None:intergenic 30.0%
CCACTGATGCAAAAAATTAA+TGG + Chr7:84690869-84690888 None:intergenic 30.0%
GCTTCTTACGTCAATTAATT+AGG - Chr7:84690819-84690838 MsG0780040949.01.T01:intron 30.0%
GTTTAAAGAAGAAGAATGAG+AGG + Chr7:84689520-84689539 None:intergenic 30.0%
TAATCACTATGGACATGAAT+GGG + Chr7:84691310-84691329 None:intergenic 30.0%
TACTACGATGTTAAGATTAG+GGG - Chr7:84692866-84692885 MsG0780040949.01.T01:CDS 30.0%
TCTACATAATGTAGGTATCA+CGG - Chr7:84690111-84690130 MsG0780040949.01.T01:intron 30.0%
TTCACAATGATAGTAACACA+GGG + Chr7:84692610-84692629 None:intergenic 30.0%
TTGGCTGCAAATTACAAAAT+AGG + Chr7:84692409-84692428 None:intergenic 30.0%
TTTCACAATGATAGTAACAC+AGG + Chr7:84692611-84692630 None:intergenic 30.0%
TTTGAGTGAATGAGTGAATA+AGG - Chr7:84691659-84691678 MsG0780040949.01.T01:intron 30.0%
! AAACTTCTTCGACTTTTCTT+AGG + Chr7:84692847-84692866 None:intergenic 30.0%
! CTATCCATTCTAAAAAGAAG+GGG - Chr7:84691188-84691207 MsG0780040949.01.T01:intron 30.0%
! GTTAACTATTTTGCAGTGAA+TGG - Chr7:84691450-84691469 MsG0780040949.01.T01:intron 30.0%
! TATCCATTCTAAAAAGAAGG+GGG - Chr7:84691189-84691208 MsG0780040949.01.T01:intron 30.0%
! TGAACATCACCATTTGATTT+AGG - Chr7:84692074-84692093 MsG0780040949.01.T01:intron 30.0%
! TGTTTTCTATTTTCCCTTGT+AGG + Chr7:84690541-84690560 None:intergenic 30.0%
! TTGTTGATGAAAGGAAGTAA+AGG - Chr7:84693029-84693048 MsG0780040949.01.T01:CDS 30.0%
!! AGTTTGGTTCTACATAATGT+AGG - Chr7:84690103-84690122 MsG0780040949.01.T01:intron 30.0%
!! GTATTGCTTATTGATTCAAG+GGG - Chr7:84689605-84689624 MsG0780040949.01.T01:intron 30.0%
!! TATTTTGTAATTTGCAGCCA+AGG - Chr7:84692408-84692427 MsG0780040949.01.T01:CDS 30.0%
!!! CCATTAATTTTTTGCATCAG+TGG - Chr7:84690866-84690885 MsG0780040949.01.T01:CDS 30.0%
!!! GCTCTAGCTTTTTTTAATCA+AGG - Chr7:84692103-84692122 MsG0780040949.01.T01:intron 30.0%
ACTACTCCAGACTGAAATAA+AGG + Chr7:84690784-84690803 None:intergenic 35.0%
ACTTAGAATACTCACCAACT+AGG + Chr7:84691506-84691525 None:intergenic 35.0%
ACTTGATTAACCACATACCT+TGG + Chr7:84692428-84692447 None:intergenic 35.0%
AGACAATCAAATGATATGGC+TGG - Chr7:84691759-84691778 MsG0780040949.01.T01:intron 35.0%
AGGAGAAAAAATGTTGGACA+AGG + Chr7:84692581-84692600 None:intergenic 35.0%
ATAGAGTCTGAATCTCTTTC+AGG - Chr7:84691965-84691984 MsG0780040949.01.T01:intron 35.0%
ATTCAACTCAGACTCTTACT+GGG + Chr7:84691915-84691934 None:intergenic 35.0%
CAGAATACACAGAAGTTCAT+AGG + Chr7:84690055-84690074 None:intergenic 35.0%
CATTTCGTAGATTGAGCATT+CGG + Chr7:84692517-84692536 None:intergenic 35.0%
CTACTCCAGACTGAAATAAA+GGG + Chr7:84690783-84690802 None:intergenic 35.0%
CTTACAAATCTCATAACGCT+AGG + Chr7:84691415-84691434 None:intergenic 35.0%
GATATCCTGGTCAATACTAT+AGG - Chr7:84690017-84690036 MsG0780040949.01.T01:intron 35.0%
GGATTCAATTTCGGAAACAA+CGG + Chr7:84689428-84689447 None:intergenic 35.0%
TACCATTTCTCAAGAGAGAT+TGG - Chr7:84692637-84692656 MsG0780040949.01.T01:intron 35.0%
TACGTGTGAATAAGTAACAC+AGG + Chr7:84690278-84690297 None:intergenic 35.0%
TAGAGTCTGAATCTCTTTCA+GGG - Chr7:84691966-84691985 MsG0780040949.01.T01:intron 35.0%
TATGAAGAACACTGTATGCA+TGG - Chr7:84690614-84690633 MsG0780040949.01.T01:intron 35.0%
TATGTCAGACTAGATAGACT+TGG - Chr7:84692946-84692965 MsG0780040949.01.T01:CDS 35.0%
TATTCAACTCAGACTCTTAC+TGG + Chr7:84691916-84691935 None:intergenic 35.0%
TCAACATCTAGATTGAACTC+TGG + Chr7:84691477-84691496 None:intergenic 35.0%
TGTATGCACTGCTATATGTT+TGG - Chr7:84692762-84692781 MsG0780040949.01.T01:intron 35.0%
TTAGCTGTACAGATTTCACA+TGG - Chr7:84690587-84690606 MsG0780040949.01.T01:intron 35.0%
TTGCAGATCAAGGAATCAAA+GGG - Chr7:84692912-84692931 MsG0780040949.01.T01:CDS 35.0%
! ATTCTAAAAAGAAGGGGGAT+TGG - Chr7:84691194-84691213 MsG0780040949.01.T01:intron 35.0%
! ATTGCAACTGGTCTAACATT+TGG - Chr7:84690723-84690742 MsG0780040949.01.T01:intron 35.0%
! GAAATATTGACTAGAGAGAC+AGG - Chr7:84692317-84692336 MsG0780040949.01.T01:intron 35.0%
! GGATAACATCTTTTCACTGT+TGG - Chr7:84692805-84692824 MsG0780040949.01.T01:intron 35.0%
! TTCTAAAAAGAAGGGGGATT+GGG - Chr7:84691195-84691214 MsG0780040949.01.T01:intron 35.0%
! TTCTATTTTCCCTTGTAGGA+AGG + Chr7:84690537-84690556 None:intergenic 35.0%
! TTGCAACTGGTCTAACATTT+GGG - Chr7:84690724-84690743 MsG0780040949.01.T01:intron 35.0%
!! AAGAGTGCTTACCAATTCAT+TGG + Chr7:84692216-84692235 None:intergenic 35.0%
!! AAGCAACTTGCTGATATTCT+TGG - Chr7:84689992-84690011 MsG0780040949.01.T01:intron 35.0%
!! AATCACCTATAGTATTGACC+AGG + Chr7:84690025-84690044 None:intergenic 35.0%
!! AATCCCCCTTCTTTTTAGAA+TGG + Chr7:84691195-84691214 None:intergenic 35.0%
!! AGAGTTCTAAGTTCTCACAA+AGG + Chr7:84693099-84693118 None:intergenic 35.0%
!! AGATAGACTTGGCTTTTTGT+TGG - Chr7:84692957-84692976 MsG0780040949.01.T01:CDS 35.0%
!! ATCTACGAAATGATTTGCTG+CGG - Chr7:84692525-84692544 MsG0780040949.01.T01:intron 35.0%
!! GTTCTAAAACATAGTTCTCC+CGG + Chr7:84691067-84691086 None:intergenic 35.0%
!! TCTCACAAAGGCTTTGAAAA+AGG + Chr7:84693087-84693106 None:intergenic 35.0%
!!! CTGTGTTTTGGAACTTTTCT+TGG - Chr7:84691132-84691151 MsG0780040949.01.T01:intron 35.0%
AAGAACACTGTATGCATGGA+TGG - Chr7:84690618-84690637 MsG0780040949.01.T01:intron 40.0%
AAGTGAGGAAGAAGATGAAG+GGG + Chr7:84689243-84689262 None:intergenic 40.0%
AATCTCATAACGCTAGGAAC+AGG + Chr7:84691409-84691428 None:intergenic 40.0%
AATGTAGGTATCACGGTGAT+TGG - Chr7:84690118-84690137 MsG0780040949.01.T01:intron 40.0%
ACTAGCATACATAAGCCTAG+TGG + Chr7:84689452-84689471 None:intergenic 40.0%
AGAACACTGTATGCATGGAT+GGG - Chr7:84690619-84690638 MsG0780040949.01.T01:intron 40.0%
AGCTAGACGCCTAAATCAAA+TGG + Chr7:84692086-84692105 None:intergenic 40.0%
ATAGTAACACAGGGACAACA+AGG + Chr7:84692601-84692620 None:intergenic 40.0%
ATCTTCCTAATGTGATGTGC+GGG - Chr7:84690754-84690773 MsG0780040949.01.T01:intron 40.0%
CTGAATCTCTTTCAGGGTAA+AGG - Chr7:84691972-84691991 MsG0780040949.01.T01:intron 40.0%
GAAGAAGAATGAGAGGGAAT+TGG + Chr7:84689513-84689532 None:intergenic 40.0%
GAAGTGAGGAAGAAGATGAA+GGG + Chr7:84689244-84689263 None:intergenic 40.0%
GACCAATCTCTCTTGAGAAA+TGG + Chr7:84692642-84692661 None:intergenic 40.0%
GAGGAAGAAAAGCAGGAAAT+GGG + Chr7:84689304-84689323 None:intergenic 40.0%
GATATTCTTGGAGGATATCC+TGG - Chr7:84690004-84690023 MsG0780040949.01.T01:intron 40.0%
GATCTTCCTAATGTGATGTG+CGG - Chr7:84690753-84690772 MsG0780040949.01.T01:intron 40.0%
GATGTTGAAGACTACCTAGT+TGG - Chr7:84691489-84691508 MsG0780040949.01.T01:intron 40.0%
GTGGTTAATCAAGTAACAGC+TGG - Chr7:84692434-84692453 MsG0780040949.01.T01:intron 40.0%
GTTGCAGATCAAGGAATCAA+AGG - Chr7:84692911-84692930 MsG0780040949.01.T01:CDS 40.0%
GTTGGCATCTTTCCACTATT+TGG - Chr7:84692784-84692803 MsG0780040949.01.T01:intron 40.0%
GTTGTATTAGCATGCAATGC+CGG - Chr7:84691026-84691045 MsG0780040949.01.T01:intron 40.0%
TAGATTACTAGGAAGACACG+AGG + Chr7:84692730-84692749 None:intergenic 40.0%
TAGATTGAGCATTCGGAATG+CGG + Chr7:84692510-84692529 None:intergenic 40.0%
TCCTATGATTCTAAGCCGTA+GGG - Chr7:84690394-84690413 MsG0780040949.01.T01:intron 40.0%
TCTAAAAAGAAGGGGGATTG+GGG - Chr7:84691196-84691215 MsG0780040949.01.T01:intron 40.0%
TGAAGTGAGGAAGAAGATGA+AGG + Chr7:84689245-84689264 None:intergenic 40.0%
TGAGGAAGAAAAGCAGGAAA+TGG + Chr7:84689305-84689324 None:intergenic 40.0%
TGCACTGCTATATGTTTGGT+TGG - Chr7:84692766-84692785 MsG0780040949.01.T01:intron 40.0%
! AACATCTTTTCACTGTTGGC+AGG - Chr7:84692809-84692828 MsG0780040949.01.T01:intron 40.0%
! AGTCTGGAGTAGTAAGATCA+AGG - Chr7:84690791-84690810 MsG0780040949.01.T01:intron 40.0%
! CAATAGCTGTAGCTTTTGTC+TGG - Chr7:84691864-84691883 MsG0780040949.01.T01:intron 40.0%
! GTCTGGAGTAGTAAGATCAA+GGG - Chr7:84690792-84690811 MsG0780040949.01.T01:intron 40.0%
! TAACTGGGAGAACTGTGTTT+TGG - Chr7:84691120-84691139 MsG0780040949.01.T01:intron 40.0%
! TAATTTGCAGCCAAGGTATG+TGG - Chr7:84692415-84692434 MsG0780040949.01.T01:intron 40.0%
! TAGCACATCAATCTGAGACT+TGG + Chr7:84689960-84689979 None:intergenic 40.0%
! TGCAACTGGTCTAACATTTG+GGG - Chr7:84690725-84690744 MsG0780040949.01.T01:intron 40.0%
! TTGGATAGAGCTTCTAGAGA+AGG - Chr7:84689934-84689953 MsG0780040949.01.T01:intron 40.0%
!! CAACTTGCTGATATTCTTGG+AGG - Chr7:84689995-84690014 MsG0780040949.01.T01:intron 40.0%
!! CCTAGTGGTGGATTCAATTT+CGG + Chr7:84689437-84689456 None:intergenic 40.0%
!! TTCCTGCTTTTCTTCCTCAA+TGG - Chr7:84689306-84689325 MsG0780040949.01.T01:three_prime_UTR 40.0%
AAAGAAGCCGAGGAAATGCT+TGG - Chr7:84690216-84690235 MsG0780040949.01.T01:intron 45.0%
AACGGTTGGAGTGTGAGAAA+TGG + Chr7:84689268-84689287 None:intergenic 45.0%
AAGAAGCCGAGGAAATGCTT+GGG - Chr7:84690217-84690236 MsG0780040949.01.T01:intron 45.0%
AGAACTCACCTCGAACAATC+TGG - Chr7:84689379-84689398 MsG0780040949.01.T01:three_prime_UTR 45.0%
AGCATACATAAGCCTAGTGG+TGG + Chr7:84689449-84689468 None:intergenic 45.0%
AGGAAGAAGATGAAGGGGTT+AGG + Chr7:84689238-84689257 None:intergenic 45.0%
ATGAAACCAGCACTTCGCAA+CGG - Chr7:84689163-84689182 MsG0780040949.01.T01:three_prime_UTR 45.0%
ATGAGAGGGAATTGGTTACC+TGG + Chr7:84689505-84689524 None:intergenic 45.0%
ATGGGAGATTGAGAGCGAAA+CGG + Chr7:84689286-84689305 None:intergenic 45.0%
ATTAGGGGTTTGACACCCAA+TGG - Chr7:84692881-84692900 MsG0780040949.01.T01:CDS 45.0%
CATTTACCCTGAAAGACCTG+CGG + Chr7:84691735-84691754 None:intergenic 45.0%
CCATCTCTCGAGAAGCAATT+CGG - Chr7:84689349-84689368 MsG0780040949.01.T01:intron 45.0%
CCGAAATTGAATCCACCACT+AGG - Chr7:84689434-84689453 MsG0780040949.01.T01:CDS 45.0%
CCGGTGCTTAAACATCTAAC+CGG - Chr7:84691045-84691064 MsG0780040949.01.T01:intron 45.0%
CCGGTTAGATGTTTAAGCAC+CGG + Chr7:84691048-84691067 None:intergenic 45.0%
CCTATGATTCTAAGCCGTAG+GGG - Chr7:84690395-84690414 MsG0780040949.01.T01:intron 45.0%
CGGAAACAACGGTTCGAATT+CGG + Chr7:84689417-84689436 None:intergenic 45.0%
CGGTGCTTAAACATCTAACC+GGG - Chr7:84691046-84691065 MsG0780040949.01.T01:intron 45.0%
CTGGTGACTATGATTGTCCA+AGG - Chr7:84692453-84692472 MsG0780040949.01.T01:intron 45.0%
GATGAAGGGGTTAGGGTTTA+AGG + Chr7:84689230-84689249 None:intergenic 45.0%
GGAAGAAGATGAAGGGGTTA+GGG + Chr7:84689237-84689256 None:intergenic 45.0%
GTAAGGTTCCAGATTGTTCG+AGG + Chr7:84689390-84689409 None:intergenic 45.0%
GTCCTATGATTCTAAGCCGT+AGG - Chr7:84690393-84690412 MsG0780040949.01.T01:intron 45.0%
GTGGTCTGTAACCTACAGTT+TGG - Chr7:84690087-84690106 MsG0780040949.01.T01:intron 45.0%
GTGTGAGAAATGGTGAAGTG+AGG + Chr7:84689258-84689277 None:intergenic 45.0%
! ATCTGCAACTGACTCACCAT+TGG + Chr7:84692900-84692919 None:intergenic 45.0%
! ATGGACATGAATGGGTTCTG+AGG + Chr7:84691302-84691321 None:intergenic 45.0%
! CTATGCTAACTTTTGCGCAC+TGG - Chr7:84690166-84690185 MsG0780040949.01.T01:intron 45.0%
! GGTTGCCCTTTATTTCAGTC+TGG - Chr7:84690775-84690794 MsG0780040949.01.T01:intron 45.0%
! TCTGCAACTGACTCACCATT+GGG + Chr7:84692899-84692918 None:intergenic 45.0%
!! TACGAAATGATTTGCTGCGG+AGG - Chr7:84692528-84692547 MsG0780040949.01.T01:intron 45.0%
!!! TTTTGCGCACTGGCTTGAAA+CGG - Chr7:84690176-84690195 MsG0780040949.01.T01:intron 45.0%
ACTAGAGAGACAGGCATGCA+TGG - Chr7:84692326-84692345 MsG0780040949.01.T01:intron 50.0%
AGCTGAAGAGAACGCCATTG+AGG + Chr7:84689323-84689342 None:intergenic 50.0%
ATTGAGTCCACAGTCCCCTA+CGG + Chr7:84690412-84690431 None:intergenic 50.0%
CCCCTACGGCTTAGAATCAT+AGG + Chr7:84690398-84690417 None:intergenic 50.0%
CCGAATTGCTTCTCGAGAGA+TGG + Chr7:84689352-84689371 None:intergenic 50.0%
CGCCATTGAGGAAGAAAAGC+AGG + Chr7:84689311-84689330 None:intergenic 50.0%
CGTACACCCAAGCATTTCCT+CGG + Chr7:84690226-84690245 None:intergenic 50.0%
GAGATTGAGAGCGAAACGGT+TGG + Chr7:84689282-84689301 None:intergenic 50.0%
GGGAATTGGTTACCTGGAGT+AGG + Chr7:84689499-84689518 None:intergenic 50.0%
GGTGAGTCAGTTGCAGATCA+AGG - Chr7:84692902-84692921 MsG0780040949.01.T01:CDS 50.0%
TAGAGTCCGCAGGTCTTTCA+GGG - Chr7:84691726-84691745 MsG0780040949.01.T01:intron 50.0%
TCTCGAACACAAAGAAGCCG+AGG - Chr7:84690206-84690225 MsG0780040949.01.T01:intron 50.0%
TGAAACCAGCACTTCGCAAC+GGG - Chr7:84689164-84689183 MsG0780040949.01.T01:three_prime_UTR 50.0%
TGCTTCTCGAGAGATGGATC+AGG + Chr7:84689346-84689365 None:intergenic 50.0%
TTAGAGTCCGCAGGTCTTTC+AGG - Chr7:84691725-84691744 MsG0780040949.01.T01:intron 50.0%
TTGCTGCGGAGGAAGTTTGA+TGG - Chr7:84692539-84692558 MsG0780040949.01.T01:intron 50.0%
!! TTTGCGCACTGGCTTGAAAC+GGG - Chr7:84690177-84690196 MsG0780040949.01.T01:intron 50.0%
CATCACTCTCGTCCTACTCC+AGG - Chr7:84689484-84689503 MsG0780040949.01.T01:CDS 55.0%
GGCAACCCGCACATCACATT+AGG + Chr7:84690762-84690781 None:intergenic 55.0%
GGTTCGAATTCGGTCGCGTA+AGG + Chr7:84689407-84689426 None:intergenic 55.0%
GTGTAGCAGTTAGAGTCCGC+AGG - Chr7:84691716-84691735 MsG0780040949.01.T01:intron 55.0%
TTCTAAGCCGTAGGGGACTG+TGG - Chr7:84690402-84690421 MsG0780040949.01.T01:intron 55.0%
TAGCGCCCGTTGCGAAGTGC+TGG + Chr7:84689172-84689191 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 84689146 84693224 84689146 ID=MsG0780040949.01;Name=MsG0780040949.01
Chr7 mRNA 84689148 84693224 84689148 ID=MsG0780040949.01.T01;Parent=MsG0780040949.01;Name=MsG0780040949.01.T01;_AED=0.39;_eAED=0.39;_QI=8|1|1|1|0.85|0.75|8|239|294
Chr7 exon 84689148 84689333 84689148 ID=MsG0780040949.01.T01:exon:40831;Parent=MsG0780040949.01.T01
Chr7 exon 84689374 84689539 84689374 ID=MsG0780040949.01.T01:exon:40830;Parent=MsG0780040949.01.T01
Chr7 five_prime_UTR 84693217 84693224 84693217 ID=MsG0780040949.01.T01:five_prime_utr;Parent=MsG0780040949.01.T01
Chr7 CDS 84692865 84693216 84692865 ID=MsG0780040949.01.T01:cds;Parent=MsG0780040949.01.T01
Chr7 CDS 84692332 84692428 84692332 ID=MsG0780040949.01.T01:cds;Parent=MsG0780040949.01.T01
Chr7 CDS 84692130 84692245 84692130 ID=MsG0780040949.01.T01:cds;Parent=MsG0780040949.01.T01
Chr7 CDS 84690860 84690904 84690860 ID=MsG0780040949.01.T01:cds;Parent=MsG0780040949.01.T01
Chr7 CDS 84690147 84690172 84690147 ID=MsG0780040949.01.T01:cds;Parent=MsG0780040949.01.T01
Chr7 CDS 84689810 84689945 84689810 ID=MsG0780040949.01.T01:cds;Parent=MsG0780040949.01.T01
Chr7 CDS 84689427 84689539 84689427 ID=MsG0780040949.01.T01:cds;Parent=MsG0780040949.01.T01
Chr7 three_prime_UTR 84689374 84689426 84689374 ID=MsG0780040949.01.T01:three_prime_utr;Parent=MsG0780040949.01.T01
Chr7 three_prime_UTR 84689148 84689333 84689148 ID=MsG0780040949.01.T01:three_prime_utr;Parent=MsG0780040949.01.T01
Chr7 mRNA 84689146 84693224 84689146 ID=MsG0780040949.01.T02;Parent=MsG0780040949.01;Name=MsG0780040949.01.T02;_AED=0.39;_eAED=0.39;_QI=8|1|1|1|1|1|7|281|294
Chr7 exon 84689146 84689539 84689146 ID=MsG0780040949.01.T02:exon:40832;Parent=MsG0780040949.01.T02
Chr7 five_prime_UTR 84693217 84693224 84693217 ID=MsG0780040949.01.T02:five_prime_utr;Parent=MsG0780040949.01.T02
Chr7 CDS 84692865 84693216 84692865 ID=MsG0780040949.01.T02:cds;Parent=MsG0780040949.01.T02
Chr7 CDS 84692332 84692428 84692332 ID=MsG0780040949.01.T02:cds;Parent=MsG0780040949.01.T02
Chr7 CDS 84692130 84692245 84692130 ID=MsG0780040949.01.T02:cds;Parent=MsG0780040949.01.T02
Chr7 CDS 84690860 84690904 84690860 ID=MsG0780040949.01.T02:cds;Parent=MsG0780040949.01.T02
Chr7 CDS 84690147 84690172 84690147 ID=MsG0780040949.01.T02:cds;Parent=MsG0780040949.01.T02
Chr7 CDS 84689810 84689945 84689810 ID=MsG0780040949.01.T02:cds;Parent=MsG0780040949.01.T02
Chr7 CDS 84689427 84689539 84689427 ID=MsG0780040949.01.T02:cds;Parent=MsG0780040949.01.T02
Chr7 three_prime_UTR 84689146 84689426 84689146 ID=MsG0780040949.01.T02:three_prime_utr;Parent=MsG0780040949.01.T02
Gene Sequence

>MsG0780040949.01.T01

ATGCAATATATGAAACCAGCACTTCGCAACGGGCGCTACACATTAATTTCTCGCTCTTTATCAAAATCAAACACCTTAAACCCTAACCCCTTCATCTTCTTCCTCACTTCACCATTTCTCACACTCCAACCGTTTCGCTCTCAATCTCCCATTTCCTGCTTTTCTTCCTCAATGGCGTTCTCTTCAGCTCCTGATCCATCTCTCGAGAAGCAATTCGGCGAGTTCAGAACTCACCTCGAACAATCTGGAACCTTACGCGACCGAATTCGAACCGTTGTTTCCGAAATTGAATCCACCACTAGGCTTATGTATGCTAGTATTCTTCTTGTTCATCACTCTCGTCCTACTCCAGAGCTTCTAGAGAAGGCCAAGTCTCAGATTGATGTGCTAAAAGAGAAGTACAAGCAACTTGCTGATATTCTTGGAGGATATCCTGGTCAATACTATAGGTATCACGGTGATTGGAAGAGTGAGACACAAACTGTTGTTTCTATGCTAACTTTTGCGCACTGGCTTGAAACGGGAAAACTTCTCGAACACAAAGAAGCCGAGGAAATGCTTGGGTTGAATGGTCCAGAGTTCAATCTAGATGTTGAAGACTACCTAGTTGGTGTTTGTTTTATGTCCAATGAATTGCCAAGGTATGTGGTTAATCAAGTAACAGCTGGTGACTATGATTGTCCAAGGAATGTTTTAAAGTTTTTAACAGAACTTCATGCCGCATTCCGAATGCTCAATCTACGAAATGATTTGCTGCGGAGGAAGTTTGATGGCATGAAGTATGACCTAAGAAAAGTCGAAGAAGTTTACTACGATGTTAAGATTAGGGGTTTGACACCCAATGGTGAGTCAGTTGCAGATCAAGGAATCAAAGGGCAGTCTTAG

>MsG0780040949.01.T02

ATGCAATATATGAAACCAGCACTTCGCAACGGGCGCTACACATTAATTTCTCGCTCTTTATCAAAATCAAACACCTTAAACCCTAACCCCTTCATCTTCTTCCTCACTTCACCATTTCTCACACTCCAACCGTTTCGCTCTCAATCTCCCATTTCCTGCTTTTCTTCCTCAATGGCGTTCTCTTCAGCTCCTGATCCATCTCTCGAGAAGCAATTCGGCGAGTTCAGAACTCACCTCGAACAATCTGGAACCTTACGCGACCGAATTCGAACCGTTGTTTCCGAAATTGAATCCACCACTAGGCTTATGTATGCTAGTATTCTTCTTGTTCATCACTCTCGTCCTACTCCAGAGCTTCTAGAGAAGGCCAAGTCTCAGATTGATGTGCTAAAAGAGAAGTACAAGCAACTTGCTGATATTCTTGGAGGATATCCTGGTCAATACTATAGGTATCACGGTGATTGGAAGAGTGAGACACAAACTGTTGTTTCTATGCTAACTTTTGCGCACTGGCTTGAAACGGGAAAACTTCTCGAACACAAAGAAGCCGAGGAAATGCTTGGGTTGAATGGTCCAGAGTTCAATCTAGATGTTGAAGACTACCTAGTTGGTGTTTGTTTTATGTCCAATGAATTGCCAAGGTATGTGGTTAATCAAGTAACAGCTGGTGACTATGATTGTCCAAGGAATGTTTTAAAGTTTTTAACAGAACTTCATGCCGCATTCCGAATGCTCAATCTACGAAATGATTTGCTGCGGAGGAAGTTTGATGGCATGAAGTATGACCTAAGAAAAGTCGAAGAAGTTTACTACGATGTTAAGATTAGGGGTTTGACACCCAATGGTGAGTCAGTTGCAGATCAAGGAATCAAAGGGCAGTCTTAG
Protein sequence

>MsG0780040949.01.T01

MQYMKPALRNGRYTLISRSLSKSNTLNPNPFIFFLTSPFLTLQPFRSQSPISCFSSSMAFSSAPDPSLEKQFGEFRTHLEQSGTLRDRIRTVVSEIESTTRLMYASILLVHHSRPTPELLEKAKSQIDVLKEKYKQLADILGGYPGQYYRYHGDWKSETQTVVSMLTFAHWLETGKLLEHKEAEEMLGLNGPEFNLDVEDYLVGVCFMSNELPRYVVNQVTAGDYDCPRNVLKFLTELHAAFRMLNLRNDLLRRKFDGMKYDLRKVEEVYYDVKIRGLTPNGESVADQGIKGQS*

>MsG0780040949.01.T02

MQYMKPALRNGRYTLISRSLSKSNTLNPNPFIFFLTSPFLTLQPFRSQSPISCFSSSMAFSSAPDPSLEKQFGEFRTHLEQSGTLRDRIRTVVSEIESTTRLMYASILLVHHSRPTPELLEKAKSQIDVLKEKYKQLADILGGYPGQYYRYHGDWKSETQTVVSMLTFAHWLETGKLLEHKEAEEMLGLNGPEFNLDVEDYLVGVCFMSNELPRYVVNQVTAGDYDCPRNVLKFLTELHAAFRMLNLRNDLLRRKFDGMKYDLRKVEEVYYDVKIRGLTPNGESVADQGIKGQS*