AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031795.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031795.01.T01 MTR_6g033260 77.778 108 5 1 1 108 84 172 2.11e-46 156
MsG0680031795.01.T01 MTR_6g033260 77.778 108 5 1 1 108 84 172 4.89e-46 156
MsG0680031795.01.T01 MTR_6g033260 77.778 108 5 1 1 108 84 172 5.13e-46 156
MsG0680031795.01.T01 MTR_7g083920 58.065 124 30 2 1 121 82 186 2.07e-35 127
MsG0680031795.01.T01 MTR_7g083920 60.000 60 21 1 65 121 20 79 2.36e-13 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031795.01.T01 AT5G14060 62.963 108 21 2 1 108 86 174 4.00e-36 128
MsG0680031795.01.T01 AT5G14060 62.963 108 21 2 1 108 86 174 7.30e-36 129
MsG0680031795.01.T01 AT5G14060 62.963 108 21 2 1 108 86 174 7.30e-36 129
MsG0680031795.01.T01 AT3G02020 57.407 108 27 1 1 108 87 175 3.85e-33 121
MsG0680031795.01.T01 AT5G13280 55.645 124 33 2 1 121 90 194 4.03e-33 121

Find 103 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTGTTGCTAATTTATTTC+TGG 0.201844 6:-26933339 MsG0680031795.01.T01:three_prime_UTR
TCTGCTTTCGGGTATATATT+TGG 0.221487 6:+26932841 None:intergenic
CCTGCAATTGCAATTGTTAC+TGG 0.240285 6:-26933199 MsG0680031795.01.T01:three_prime_UTR
AGGGGACAGGTTCTGCTTTC+GGG 0.250446 6:+26932830 None:intergenic
TTTGCAGCATATCTTAATAA+AGG 0.279940 6:-26933513 MsG0680031795.01.T01:three_prime_UTR
GAGAAGCACGTGATTGAAAA+TGG 0.284748 6:-26936574 MsG0680031795.01.T01:five_prime_UTR
AGCCTCGTCAAATGTCAAAA+AGG 0.289534 6:+26932810 None:intergenic
ACGACAATTGGGAAAGCATT+AGG 0.291051 6:-26932993 MsG0680031795.01.T01:three_prime_UTR
AAGGGGACAGGTTCTGCTTT+CGG 0.315453 6:+26932829 None:intergenic
GTTTCTTTCAATTACATTCA+TGG 0.321604 6:-26936756 MsG0680031795.01.T01:five_prime_UTR
GATTTGACAGCTACGACAAT+TGG 0.340859 6:-26933005 MsG0680031795.01.T01:three_prime_UTR
GATCTCTCAAGGTGCATCTA+AGG 0.350683 6:-26930842 MsG0680031795.01.T01:three_prime_UTR
ATGAGAGTGCCCGGAGCTTC+GGG 0.366068 6:+26931907 None:intergenic
GCAATTGTTACTGGCTTCCT+TGG 0.372310 6:-26933190 MsG0680031795.01.T01:three_prime_UTR
CGACAATTGGGAAAGCATTA+GGG 0.375851 6:-26932992 MsG0680031795.01.T01:three_prime_UTR
ATATATTTGGATCACATGTT+AGG 0.375982 6:+26932854 None:intergenic
GATGAGAGTGCCCGGAGCTT+CGG 0.383095 6:+26931906 None:intergenic
TCTTCTGAAGCCTTCTTCTC+AGG 0.387328 6:-26936898 MsG0680031795.01.T01:intron
GATTGTTGTTCTTTCTGCTA+TGG 0.389325 6:-26936404 MsG0680031795.01.T01:CDS
TATACATGTGTGATGAAGTT+TGG 0.390241 6:-26936502 MsG0680031795.01.T01:exon
CCAGTAACAATTGCAATTGC+AGG 0.390513 6:+26933199 None:intergenic
AAACTACTAACAAGCTTTGC+TGG 0.390948 6:-26936378 MsG0680031795.01.T01:intron
TTGCAGCATATCTTAATAAA+GGG 0.401227 6:-26933512 MsG0680031795.01.T01:three_prime_UTR
AGGAGTGTGGTTGAGGAAGA+AGG 0.422430 6:-26936550 MsG0680031795.01.T01:five_prime_UTR
ATTCCTACAACCCGAAGCTC+CGG 0.423583 6:-26931917 MsG0680031795.01.T01:three_prime_UTR
ATTGTTGTTCTTTCTGCTAT+GGG 0.430911 6:-26936403 MsG0680031795.01.T01:CDS
CAATGTTAGATACGTGTCAT+TGG 0.440575 6:-26936254 MsG0680031795.01.T01:intron
TGAGTATACAGTTTATTAAG+TGG 0.442227 6:+26930816 None:intergenic
TTATAAAAGACCTGCATCTC+AGG 0.442455 6:-26934697 MsG0680031795.01.T01:intron
TGCAATCTCTTTGCAACAGC+CGG 0.443468 6:+26933241 None:intergenic
ATTAGGGTTACCTGAGATCC+AGG 0.447612 6:-26932976 MsG0680031795.01.T01:intron
CAAAGAGATTGCATGGCGAT+TGG 0.447713 6:-26933231 MsG0680031795.01.T01:three_prime_UTR
CAGTACGACGCATTTGAGAT+TGG 0.448466 6:-26933316 MsG0680031795.01.T01:three_prime_UTR
ATTCGTGTTCTTCGAACCCT+TGG 0.455553 6:-26930880 MsG0680031795.01.T01:three_prime_UTR
TGCGGTGTTACTAATGTCTC+TGG 0.455991 6:-26934737 MsG0680031795.01.T01:CDS
GAGAGGATGATGGAAGTTGC+TGG 0.458399 6:-26936457 MsG0680031795.01.T01:CDS
AGTGGTGGAAGAAGGAGGTT+AGG 0.459899 6:+26936688 None:intergenic
GCTAGCTTACTTTGGTGCTC+AGG 0.462460 6:-26932782 MsG0680031795.01.T01:intron
ACAACAATCGGCCTCTCCTC+CGG 0.468903 6:+26936418 None:intergenic
TCATGTGCAGTAACAACATT+GGG 0.469729 6:-26933041 MsG0680031795.01.T01:three_prime_UTR
TGCCCGGAGCTTCGGGTTGT+AGG 0.471269 6:+26931914 None:intergenic
GCTGCTGAGCTAGCTTACTT+TGG 0.473389 6:-26932790 MsG0680031795.01.T01:three_prime_UTR
GTTGAGGAAGAAGGAGATGA+AGG 0.473705 6:-26936541 MsG0680031795.01.T01:five_prime_UTR
GTGATTTGAGAATGAGAGGA+AGG 0.473705 6:+26936977 None:intergenic
TATGCACAAACCTGGATCTC+AGG 0.475768 6:+26932966 None:intergenic
TTCCTTGTGATGAGAGTGCC+CGG 0.482252 6:+26931898 None:intergenic
ATTTGACAGCTACGACAATT+GGG 0.487957 6:-26933004 MsG0680031795.01.T01:three_prime_UTR
GATTAATTAACCTGAGAAGA+AGG 0.496242 6:+26936888 None:intergenic
TTCAGAACTGTGGATCAACT+TGG 0.498133 6:-26934568 MsG0680031795.01.T01:intron
ATAGTGAGCACTCGCATGCT+TGG 0.505310 6:-26931724 MsG0680031795.01.T01:three_prime_UTR
GATGATGGAAGTTGCTGGAT+TGG 0.506291 6:-26936452 MsG0680031795.01.T01:CDS
GGAATATCACCTTCTCTAGC+AGG 0.510399 6:+26931953 None:intergenic
AGGAAGAAGGAGATGAAGGA+GGG 0.510671 6:-26936537 MsG0680031795.01.T01:five_prime_UTR
TGGTGGTTCGTCAGTTGCGT+CGG 0.511088 6:-26936482 MsG0680031795.01.T01:CDS
ACGTGGCAAGTGGTGGAAGA+AGG 0.512671 6:+26936680 None:intergenic
GAGGAAGAAGGAGATGAAGG+AGG 0.514520 6:-26936538 MsG0680031795.01.T01:five_prime_UTR
TCAGTACGGTTTCCTTGCTA+AGG 0.514582 6:-26931701 MsG0680031795.01.T01:three_prime_UTR
AAATGGGAGGAGTGTGGTTG+AGG 0.521852 6:-26936557 MsG0680031795.01.T01:five_prime_UTR
TGCGTCGGCGGAGAGGATGA+TGG 0.529495 6:-26936467 MsG0680031795.01.T01:CDS
AACAAGAACACGTACTTGGC+GGG 0.530574 6:+26933481 None:intergenic
TGCTGCCACGTGGCAAGTGG+TGG 0.532591 6:+26936673 None:intergenic
AGAAGCACGTGATTGAAAAT+GGG 0.537453 6:-26936573 MsG0680031795.01.T01:five_prime_UTR
TGTTACTGGCTTCCTTGGAA+AGG 0.538431 6:-26933185 MsG0680031795.01.T01:intron
ACTCGCATGCTTGGTCAGTA+CGG 0.544929 6:-26931715 MsG0680031795.01.T01:three_prime_UTR
ATAGCAGAAAGAACAACAAT+CGG 0.545247 6:+26936406 None:intergenic
TGGTTCGTCAGTTGCGTCGG+CGG 0.549574 6:-26936479 MsG0680031795.01.T01:CDS
ATCATGTGCAGTAACAACAT+TGG 0.549798 6:-26933042 MsG0680031795.01.T01:three_prime_UTR
AGAAGGTGATATTCCAGTAC+GGG 0.552440 6:-26931945 MsG0680031795.01.T01:three_prime_UTR
TTCCTACAACCCGAAGCTCC+GGG 0.556056 6:-26931916 MsG0680031795.01.T01:three_prime_UTR
ACTGCTCTTACCTGAGATGC+AGG 0.559867 6:+26934687 None:intergenic
CAGGTATGGAAGGATGTTGA+TGG 0.560605 6:-26932880 MsG0680031795.01.T01:three_prime_UTR
GAAGAAGGCTTCAGAAGAAG+AGG 0.562212 6:+26936903 None:intergenic
ATAGCATAATTACCTTTCCA+AGG 0.564354 6:+26933173 None:intergenic
CTCCGGGCACTCTCATCACA+AGG 0.575055 6:-26931900 MsG0680031795.01.T01:three_prime_UTR
TTACCTGCATTTCAGAACTG+TGG 0.577618 6:-26934578 MsG0680031795.01.T01:intron
AACTGTGGATCAACTTGGAG+TGG 0.578338 6:-26934563 MsG0680031795.01.T01:CDS
GAGAAGGTGATATTCCAGTA+CGG 0.579138 6:-26931946 MsG0680031795.01.T01:three_prime_UTR
ACCACTTACGCAGGTATGGA+AGG 0.583143 6:-26932890 MsG0680031795.01.T01:intron
ACATGTGTGATGAAGTTTGG+TGG 0.583186 6:-26936499 MsG0680031795.01.T01:exon
GCTGTTGCAAAGAGATTGCA+TGG 0.587919 6:-26933238 MsG0680031795.01.T01:three_prime_UTR
GAAGGTCACGTGCAATGTGT+TGG 0.588439 6:-26936596 MsG0680031795.01.T01:five_prime_UTR
CGTCAGTTGCGTCGGCGGAG+AGG 0.589117 6:-26936474 MsG0680031795.01.T01:CDS
ACTGTTCAAATGATCTCTCA+AGG 0.590004 6:-26930853 MsG0680031795.01.T01:three_prime_UTR
TATCTTAATAAAGGGTGTCA+AGG 0.596099 6:-26933504 MsG0680031795.01.T01:three_prime_UTR
GCAGTAACAACATTGGGTAG+AGG 0.608651 6:-26933035 MsG0680031795.01.T01:three_prime_UTR
TCTATGAGACCTGCTAGAGA+AGG 0.616190 6:-26931962 MsG0680031795.01.T01:three_prime_UTR
AACTGATGACTTCACAAATG+CGG 0.619684 6:-26933284 MsG0680031795.01.T01:three_prime_UTR
TGTTGCTGCCACGTGGCAAG+TGG 0.628519 6:+26936670 None:intergenic
TTCTTCCACCACTTGCCACG+TGG 0.628751 6:-26936678 MsG0680031795.01.T01:five_prime_UTR
CATCAACTCTCACCTTAGCA+AGG 0.629028 6:+26931689 None:intergenic
AGCACGTGATTGAAAATGGG+AGG 0.632569 6:-26936570 MsG0680031795.01.T01:five_prime_UTR
TGGCAAGTGGTGGAAGAAGG+AGG 0.637824 6:+26936683 None:intergenic
GTAACAACATTGGGTAGAGG+TGG 0.638482 6:-26933032 MsG0680031795.01.T01:three_prime_UTR
TCATTTGAACAGTGACACCA+AGG 0.642740 6:+26930863 None:intergenic
GAATGTGATTTGAGAATGAG+AGG 0.645406 6:+26936973 None:intergenic
GAAACGTAATGTGACCATGT+TGG 0.655818 6:-26931749 MsG0680031795.01.T01:three_prime_UTR
GATTGAAAATGGGAGGAGTG+TGG 0.676631 6:-26936563 MsG0680031795.01.T01:five_prime_UTR
TCTATGCTGTTGCTGCCACG+TGG 0.684772 6:+26936663 None:intergenic
CAAGGAAAGAGATATGAGCA+AGG 0.685725 6:-26931882 MsG0680031795.01.T01:intron
AGAATGAGAGGAAGGAGACG+CGG 0.696714 6:+26936985 None:intergenic
CATTTGAACAGTGACACCAA+GGG 0.697565 6:+26930864 None:intergenic
AGTGCTCACTATATCCAACA+TGG 0.704441 6:+26931735 None:intergenic
CTAGCAGGTCTCATAGACTG+CGG 0.707348 6:+26931968 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATGTAATAATTTAAAAAA+TGG + Chr6:26932454-26932473 None:intergenic 10.0%
!! TAAAAAACATAGTATTTATT+AGG + Chr6:26932955-26932974 None:intergenic 10.0%
!! TTAAATCAATAAAAATAGTA+AGG + Chr6:26936657-26936676 None:intergenic 10.0%
!!! ATAATTTTCTGATAAAAAAA+TGG - Chr6:26934720-26934739 MsG0680031795.01.T01:CDS 10.0%
!!! TTGTTTTGTATTTAAAATTA+TGG - Chr6:26933788-26933807 MsG0680031795.01.T01:intron 10.0%
!! AAACACAAATCTTATATAAT+TGG + Chr6:26935694-26935713 None:intergenic 15.0%
!! AAATTATTACATGTGTATTA+TGG - Chr6:26932460-26932479 MsG0680031795.01.T01:intron 15.0%
!!! ATAACACCATTTTAAAATTT+GGG + Chr6:26933612-26933631 None:intergenic 15.0%
!!! TAATTTATTGGTCTAATTTT+TGG - Chr6:26935385-26935404 MsG0680031795.01.T01:intron 15.0%
!!! TATAACACCATTTTAAAATT+TGG + Chr6:26933613-26933632 None:intergenic 15.0%
!!! TTGTTTCTGTTATAATTTAT+TGG - Chr6:26935373-26935392 MsG0680031795.01.T01:intron 15.0%
!! AAAATTGCGCAATTAAAAAT+AGG + Chr6:26932025-26932044 None:intergenic 20.0%
!! AAATTCATTGTAAAAAAGGA+AGG + Chr6:26933167-26933186 None:intergenic 20.0%
!! AACATAGTATTTATTAGGAT+CGG + Chr6:26932950-26932969 None:intergenic 20.0%
!! AGTGAAATTCATTGTAAAAA+AGG + Chr6:26933171-26933190 None:intergenic 20.0%
!! ATTATGTTTGTTCTGTTATT+AGG - Chr6:26933034-26933053 MsG0680031795.01.T01:three_prime_UTR 20.0%
!! ATTGAATGTAACTAAATGTA+TGG - Chr6:26931914-26931933 MsG0680031795.01.T01:three_prime_UTR 20.0%
!! ATTGACAAAAAGACATTATT+TGG - Chr6:26935651-26935670 MsG0680031795.01.T01:intron 20.0%
!! TCAATAAAAATAGTAAGGAT+AGG + Chr6:26936652-26936671 None:intergenic 20.0%
!! TTGACAAAAAGACATTATTT+GGG - Chr6:26935652-26935671 MsG0680031795.01.T01:intron 20.0%
!! TTGTAAAAAAACATAGTAGA+TGG - Chr6:26935447-26935466 MsG0680031795.01.T01:intron 20.0%
!!! AAAATGGTTTTTACATGTTT+GGG - Chr6:26932694-26932713 MsG0680031795.01.T01:intron 20.0%
!!! ACATGTAAAAGTATAAAAAC+CGG + Chr6:26936187-26936206 None:intergenic 20.0%
!!! AGTAAAATAAAAAGAAGTGT+TGG + Chr6:26934676-26934695 None:intergenic 20.0%
!!! ATACTTTTACATGTATAAAC+AGG - Chr6:26936193-26936212 MsG0680031795.01.T01:intron 20.0%
!!! GATTTTGTTTTATTTCAGTT+GGG - Chr6:26935295-26935314 MsG0680031795.01.T01:intron 20.0%
!!! GGAATTAATTTTGTCTAAAT+TGG - Chr6:26932728-26932747 MsG0680031795.01.T01:intron 20.0%
!!! GTAAAATAAAAAGAAGTGTT+GGG + Chr6:26934675-26934694 None:intergenic 20.0%
!!! TAAAATGGTTTTTACATGTT+TGG - Chr6:26932693-26932712 MsG0680031795.01.T01:intron 20.0%
!!! TAACACCATTTTAAAATTTG+GGG + Chr6:26933611-26933630 None:intergenic 20.0%
!!! TAATGTCTTTTTGTCAATAA+CGG + Chr6:26935649-26935668 None:intergenic 20.0%
!!! TCTACGTTTAATTATTTTGT+TGG - Chr6:26936872-26936891 MsG0680031795.01.T01:intron 20.0%
! AAACCATATTGAGAATAAGA+AGG + Chr6:26934103-26934122 None:intergenic 25.0%
! AATGGTCAAAATTTGTGAAA+TGG - Chr6:26932238-26932257 MsG0680031795.01.T01:intron 25.0%
! ACTGATTAACATTCTATTAC+AGG - Chr6:26936910-26936929 MsG0680031795.01.T01:five_prime_UTR 25.0%
! AGAAAAAGGTAGAGATAAAA+AGG + Chr6:26936711-26936730 None:intergenic 25.0%
! AGTCAGCAAAATTTAAATGT+TGG - Chr6:26935130-26935149 MsG0680031795.01.T01:intron 25.0%
! AGTTGTTGCTAATTTATTTC+TGG - Chr6:26934475-26934494 MsG0680031795.01.T01:intron 25.0%
! ATATATTTGGATCACATGTT+AGG + Chr6:26934963-26934982 None:intergenic 25.0%
! ATCAATTGAAATGATACAAG+AGG + Chr6:26932109-26932128 None:intergenic 25.0%
! ATGGTCAAAATTTGTGAAAT+GGG - Chr6:26932239-26932258 MsG0680031795.01.T01:intron 25.0%
! CAAAATTTAAATGTTGGAGT+TGG - Chr6:26935136-26935155 MsG0680031795.01.T01:intron 25.0%
! CAGTACTACATACATAATAA+TGG + Chr6:26932340-26932359 None:intergenic 25.0%
! GATAGAAAATCAATTACTAG+AGG - Chr6:26935486-26935505 MsG0680031795.01.T01:intron 25.0%
! GCAGAATTTGAATAAATTTC+TGG + Chr6:26932902-26932921 None:intergenic 25.0%
! GTAAAAAAGGAAGGAAAAAA+AGG + Chr6:26933158-26933177 None:intergenic 25.0%
! GTTTCTTTCAATTACATTCA+TGG - Chr6:26931058-26931077 MsG0680031795.01.T01:intron 25.0%
! TATCAGTACTAGGATATAAA+TGG + Chr6:26931761-26931780 None:intergenic 25.0%
! TTCATAGCATCATAATTATC+CGG - Chr6:26936684-26936703 MsG0680031795.01.T01:five_prime_UTR 25.0%
! TTGCAGCATATCTTAATAAA+GGG - Chr6:26934302-26934321 MsG0680031795.01.T01:intron 25.0%
! TTGGATTCTAACTTAAAGTT+AGG - Chr6:26932747-26932766 MsG0680031795.01.T01:intron 25.0%
! TTTGCAGCATATCTTAATAA+AGG - Chr6:26934301-26934320 MsG0680031795.01.T01:intron 25.0%
!! AATCGTAACCTTATCAATTT+TGG - Chr6:26934076-26934095 MsG0680031795.01.T01:intron 25.0%
!! TCAGCAATCATCATTAATTT+TGG - Chr6:26936587-26936606 MsG0680031795.01.T01:five_prime_UTR 25.0%
!! TCATATATGAACTCATTTTC+AGG + Chr6:26933748-26933767 None:intergenic 25.0%
!! TTTTCAACATCAGAAAACAA+AGG + Chr6:26932999-26933018 None:intergenic 25.0%
!! TTTTCAATCTTCGAAGATTT+AGG - Chr6:26936218-26936237 MsG0680031795.01.T01:intron 25.0%
!!! ATCATCATTAATTTTGGAGA+AGG - Chr6:26936593-26936612 MsG0680031795.01.T01:five_prime_UTR 25.0%
!!! GAACTTGTGTTTTTTCTTAA+AGG - Chr6:26934742-26934761 MsG0680031795.01.T01:CDS 25.0%
!!! GGATTTTGTTTTATTTCAGT+TGG - Chr6:26935294-26935313 MsG0680031795.01.T01:intron 25.0%
!!! GTATTCTTTCAAGTACTTTT+TGG - Chr6:26935268-26935287 MsG0680031795.01.T01:intron 25.0%
!!! TATTTTAGAAGCAACTTATC+CGG - Chr6:26934554-26934573 MsG0680031795.01.T01:CDS 25.0%
!!! TCAAGACTATTAGTTTCTTT+TGG - Chr6:26934256-26934275 MsG0680031795.01.T01:intron 25.0%
!!! TTTCATTTTAGTTGCTAACT+TGG - Chr6:26934141-26934160 MsG0680031795.01.T01:intron 25.0%
AAAACAGATTATTCAAGCTG+TGG + Chr6:26936798-26936817 None:intergenic 30.0%
AAAATCGCACAATTAGAATC+AGG - Chr6:26932266-26932285 MsG0680031795.01.T01:intron 30.0%
AAGAAGGTCCAAAATTGATA+AGG + Chr6:26934087-26934106 None:intergenic 30.0%
AATTAGCAACAACTATGATC+AGG + Chr6:26934469-26934488 None:intergenic 30.0%
ACATTGAAAGTAATCTTCAG+TGG - Chr6:26931822-26931841 MsG0680031795.01.T01:intron 30.0%
ACTTCTGTCTTTAGATTTGT+CGG - Chr6:26935330-26935349 MsG0680031795.01.T01:intron 30.0%
ATAGCAGAAAGAACAACAAT+CGG + Chr6:26931411-26931430 None:intergenic 30.0%
ATAGCATAATTACCTTTCCA+AGG + Chr6:26934644-26934663 None:intergenic 30.0%
ATATAATTTAGCTGTTGCTG+TGG + Chr6:26934014-26934033 None:intergenic 30.0%
ATGAAAACAAAGTGGCTATT+TGG + Chr6:26932181-26932200 None:intergenic 30.0%
ATTAGCAACAACTATGATCA+GGG + Chr6:26934468-26934487 None:intergenic 30.0%
ATTGCAGAAGAACTTAATCT+TGG + Chr6:26936849-26936868 None:intergenic 30.0%
ATTTGTCTATGTAGTTCATC+AGG + Chr6:26936389-26936408 None:intergenic 30.0%
CAATTGATCTTACTTGATCA+TGG - Chr6:26932121-26932140 MsG0680031795.01.T01:intron 30.0%
CATTTCAAAATGGAGACAAA+AGG - Chr6:26934885-26934904 MsG0680031795.01.T01:intron 30.0%
CTGAACATGTGTTTATAAGT+GGG - Chr6:26933540-26933559 MsG0680031795.01.T01:intron 30.0%
GATCTAACATGAAAACAAAG+TGG + Chr6:26932189-26932208 None:intergenic 30.0%
GATTAATTAACCTGAGAAGA+AGG + Chr6:26930929-26930948 None:intergenic 30.0%
GTGATTCTAGACACATAAAA+TGG - Chr6:26932678-26932697 MsG0680031795.01.T01:intron 30.0%
GTTTATAAACACTCATGCAA+GGG + Chr6:26933992-26934011 None:intergenic 30.0%
TAAATATATTCCCGATTCAC+AGG - Chr6:26935815-26935834 MsG0680031795.01.T01:intron 30.0%
TATACATGTGTGATGAAGTT+TGG - Chr6:26931312-26931331 MsG0680031795.01.T01:intron 30.0%
TCACAACAAAACTAAAGAAG+TGG + Chr6:26933496-26933515 None:intergenic 30.0%
TCATAGCATCATAATTATCC+GGG - Chr6:26936685-26936704 MsG0680031795.01.T01:five_prime_UTR 30.0%
TCTGAACATGTGTTTATAAG+TGG - Chr6:26933539-26933558 MsG0680031795.01.T01:intron 30.0%
TGCACACAATATAACATATC+AGG + Chr6:26933388-26933407 None:intergenic 30.0%
TGGTCAAAATTTGTGAAATG+GGG - Chr6:26932240-26932259 MsG0680031795.01.T01:intron 30.0%
TTAACATTGAAAGTCGAAGT+TGG - Chr6:26931937-26931956 MsG0680031795.01.T01:three_prime_UTR 30.0%
TTACGAATTTCCGAAAAAAG+CGG - Chr6:26931191-26931210 MsG0680031795.01.T01:intron 30.0%
TTATTGTGTTAAGCAAGACT+TGG - Chr6:26935986-26936005 MsG0680031795.01.T01:intron 30.0%
TTGTCAAATAGCAGTTATAG+TGG + Chr6:26932850-26932869 None:intergenic 30.0%
TTTGTCTATGTAGTTCATCA+GGG + Chr6:26936388-26936407 None:intergenic 30.0%
! ATTAGGCTTAAATGCAGTTT+TGG - Chr6:26931965-26931984 MsG0680031795.01.T01:three_prime_UTR 30.0%
! ATTGTTGTTCTTTCTGCTAT+GGG - Chr6:26931411-26931430 MsG0680031795.01.T01:intron 30.0%
! GCATGATTTGTGTATGTTAT+AGG - Chr6:26933338-26933357 MsG0680031795.01.T01:three_prime_UTR 30.0%
! TCAATCAAAGTATCAGTACT+AGG + Chr6:26931771-26931790 None:intergenic 30.0%
! TGCATATTAGTTTCACATGA+TGG - Chr6:26933962-26933981 MsG0680031795.01.T01:intron 30.0%
!! AGTCGAAGTTGGTATAAATT+AGG - Chr6:26931948-26931967 MsG0680031795.01.T01:three_prime_UTR 30.0%
!! ATTAGGTGTTACTTGCAATA+TGG - Chr6:26936418-26936437 MsG0680031795.01.T01:CDS 30.0%
!! TACCACCCCAAATTTTAAAA+TGG - Chr6:26933603-26933622 MsG0680031795.01.T01:intron 30.0%
!! TATCTTAATAAAGGGTGTCA+AGG - Chr6:26934310-26934329 MsG0680031795.01.T01:intron 30.0%
!! TATGTGTCTAGAATCACTTT+TGG + Chr6:26932675-26932694 None:intergenic 30.0%
!! TCGAAGTTGGTATCAAAAAA+TGG - Chr6:26931672-26931691 MsG0680031795.01.T01:intron 30.0%
!!! AGATGATGGATCTATTTTGT+AGG + Chr6:26936552-26936571 None:intergenic 30.0%
!!! GTAGTTTTGGATTGTAAAGT+TGG + Chr6:26935536-26935555 None:intergenic 30.0%
!!! GTATGCTTTTTCTTGTGAAT+GGG + Chr6:26934039-26934058 None:intergenic 30.0%
!!! TGTATGCTTTTTCTTGTGAA+TGG + Chr6:26934040-26934059 None:intergenic 30.0%
AAAATGACACAGGGAAGTAA+AGG + Chr6:26935182-26935201 None:intergenic 35.0%
AAACAACAAGAACACGTACT+TGG + Chr6:26934340-26934359 None:intergenic 35.0%
AAACTACTAACAAGCTTTGC+TGG - Chr6:26931436-26931455 MsG0680031795.01.T01:intron 35.0%
AAATCTGCGTAATGTGTGTT+TGG - Chr6:26932632-26932651 MsG0680031795.01.T01:intron 35.0%
AACTGATGACTTCACAAATG+CGG - Chr6:26934530-26934549 MsG0680031795.01.T01:CDS 35.0%
AAGTTCCTGCTAAACAACAA+AGG + Chr6:26936485-26936504 None:intergenic 35.0%
AATGTAGAAGCAATGTAGTC+GGG - Chr6:26935212-26935231 MsG0680031795.01.T01:intron 35.0%
ACTCCTCGTTTACAAATTTC+TGG + Chr6:26933842-26933861 None:intergenic 35.0%
ACTGTTCAAATGATCTCTCA+AGG - Chr6:26936961-26936980 MsG0680031795.01.T01:five_prime_UTR 35.0%
AGAATCAGGAACCAAAATTG+TGG - Chr6:26932280-26932299 MsG0680031795.01.T01:intron 35.0%
AGATGGTGAATTATGCACAT+TGG - Chr6:26935464-26935483 MsG0680031795.01.T01:intron 35.0%
ATAACGGCATACCAAAAAAG+AGG + Chr6:26935633-26935652 None:intergenic 35.0%
ATATCGCTAATCTCACAAAC+CGG - Chr6:26933565-26933584 MsG0680031795.01.T01:intron 35.0%
ATCATGTGCAGTAACAACAT+TGG - Chr6:26934772-26934791 MsG0680031795.01.T01:intron 35.0%
ATTCAAATTCTGCACTGCTA+TGG - Chr6:26932909-26932928 MsG0680031795.01.T01:intron 35.0%
CAATGTAGAAGCAATGTAGT+CGG - Chr6:26935211-26935230 MsG0680031795.01.T01:intron 35.0%
CAATGTCAATGACATGTATC+TGG + Chr6:26931808-26931827 None:intergenic 35.0%
CAATGTTAGATACGTGTCAT+TGG - Chr6:26931560-26931579 MsG0680031795.01.T01:intron 35.0%
CACAGTTCTGCATTTCAAAA+TGG - Chr6:26934875-26934894 MsG0680031795.01.T01:intron 35.0%
CAGCAATACTTGTAGCATTA+TGG - Chr6:26933406-26933425 MsG0680031795.01.T01:intron 35.0%
CATTCAACGACAACAATGAT+AGG + Chr6:26936160-26936179 None:intergenic 35.0%
CTCCTCGTTTACAAATTTCT+GGG + Chr6:26933841-26933860 None:intergenic 35.0%
CTTCATATTGAAGTCACATC+TGG - Chr6:26932363-26932382 MsG0680031795.01.T01:intron 35.0%
GAATGTGATTTGAGAATGAG+AGG + Chr6:26930844-26930863 None:intergenic 35.0%
GGACCTTCTTATTCTCAATA+TGG - Chr6:26934097-26934116 MsG0680031795.01.T01:intron 35.0%
GGTAATTTAACCCTCAAAAC+CGG + Chr6:26933587-26933606 None:intergenic 35.0%
GGTTTATAAACACTCATGCA+AGG + Chr6:26933993-26934012 None:intergenic 35.0%
TACCCAGAAATTTGTAAACG+AGG - Chr6:26933836-26933855 MsG0680031795.01.T01:intron 35.0%
TAGTCGGGTATTTCATCTAT+TGG - Chr6:26935227-26935246 MsG0680031795.01.T01:intron 35.0%
TCATGTGCAGTAACAACATT+GGG - Chr6:26934773-26934792 MsG0680031795.01.T01:intron 35.0%
TGTCACGTCATCAAATTGAA+TGG - Chr6:26932220-26932239 MsG0680031795.01.T01:intron 35.0%
TGTTTGTTCTGTTATTAGGC+TGG - Chr6:26933038-26933057 MsG0680031795.01.T01:three_prime_UTR 35.0%
TTAATTTCAACCACTTACGC+AGG - Chr6:26934915-26934934 MsG0680031795.01.T01:intron 35.0%
TTATAAAAGACCTGCATCTC+AGG - Chr6:26933117-26933136 MsG0680031795.01.T01:intron 35.0%
TTGACATTGAAAGTCGAAGT+TGG - Chr6:26931659-26931678 MsG0680031795.01.T01:intron 35.0%
! AATTGTGGTTTGGCCAAAAT+AGG - Chr6:26932295-26932314 MsG0680031795.01.T01:intron 35.0%
! AGAAGCACGTGATTGAAAAT+GGG - Chr6:26931241-26931260 MsG0680031795.01.T01:intron 35.0%
! ATGGTTTTTACATGTTTGGG+TGG - Chr6:26932697-26932716 MsG0680031795.01.T01:intron 35.0%
! ATTGTGGTTTGGCCAAAATA+GGG - Chr6:26932296-26932315 MsG0680031795.01.T01:intron 35.0%
! CACATCTAGAACTAGACATT+TGG + Chr6:26933686-26933705 None:intergenic 35.0%
! GATCTTTGATCTGTTTGTTG+AGG - Chr6:26936352-26936371 MsG0680031795.01.T01:intron 35.0%
! GATTGTTGTTCTTTCTGCTA+TGG - Chr6:26931410-26931429 MsG0680031795.01.T01:intron 35.0%
! GTTTTCTGTTTACAATCTGC+AGG - Chr6:26936020-26936039 MsG0680031795.01.T01:intron 35.0%
! TAAAATATGTCCAGAGCATC+TGG - Chr6:26934175-26934194 MsG0680031795.01.T01:intron 35.0%
! TCTGCTTTCGGGTATATATT+TGG + Chr6:26934976-26934995 None:intergenic 35.0%
! TTTTGACCGAATCGCAATTT+TGG - Chr6:26931996-26932015 MsG0680031795.01.T01:intron 35.0%
! TTTTGGCCAAACCACAATTT+TGG + Chr6:26932294-26932313 None:intergenic 35.0%
!! AATGTCTAGTTCTAGATGTG+AGG - Chr6:26933686-26933705 MsG0680031795.01.T01:intron 35.0%
!! AATTGCGATTCGGTCAAAAT+AGG + Chr6:26931995-26932014 None:intergenic 35.0%
!! ATGTCTAGTTCTAGATGTGA+GGG - Chr6:26933687-26933706 MsG0680031795.01.T01:intron 35.0%
!! CAGAAGTATCAGTACTACTA+CGG + Chr6:26931487-26931506 None:intergenic 35.0%
!! GTAATGTGTGTTTGGTTTGA+TGG - Chr6:26932640-26932659 MsG0680031795.01.T01:intron 35.0%
!! TCTCTAGTTCTTCAACAACA+TGG + Chr6:26936510-26936529 None:intergenic 35.0%
!! TGATTCTCGATTCGTAGTTT+TGG + Chr6:26935549-26935568 None:intergenic 35.0%
!! TGCAGTTTTAGTCCCTATTT+TGG + Chr6:26932311-26932330 None:intergenic 35.0%
!! TTTTGTTGTGAGTCTTGCAA+TGG - Chr6:26933505-26933524 MsG0680031795.01.T01:three_prime_UTR 35.0%
!!! CACCATTTTAAAATTTGGGG+TGG + Chr6:26933608-26933627 None:intergenic 35.0%
!!! TGGATTGGTTATGAGTTTTC+CGG - Chr6:26931377-26931396 MsG0680031795.01.T01:intron 35.0%
!!! TTACTTCCCTGTGTCATTTT+GGG - Chr6:26935182-26935201 MsG0680031795.01.T01:intron 35.0%
!!! TTTACTTCCCTGTGTCATTT+TGG - Chr6:26935181-26935200 MsG0680031795.01.T01:intron 35.0%
AACAAATGACATTCCCCACA+TGG + Chr6:26936734-26936753 None:intergenic 40.0%
AAGAGCTAGATAAGTGAACC+AGG + Chr6:26935070-26935089 None:intergenic 40.0%
AAGGTAGAGATAAAAAGGCC+CGG + Chr6:26936706-26936725 None:intergenic 40.0%
ACAACAATGATAGGTCTGAC+AGG + Chr6:26936151-26936170 None:intergenic 40.0%
ACACTAATAATCAGCACCAG+AGG + Chr6:26935413-26935432 None:intergenic 40.0%
ACAGATAACATCCCTTGTAC+TGG + Chr6:26935774-26935793 None:intergenic 40.0%
ACATGTGTGATGAAGTTTGG+TGG - Chr6:26931315-26931334 MsG0680031795.01.T01:intron 40.0%
ACTATCCCCAAAATGACACA+GGG + Chr6:26935191-26935210 None:intergenic 40.0%
ACTCGATAACAGATGCACAA+CGG + Chr6:26933649-26933668 None:intergenic 40.0%
AGAACTAGAGAAAATCGCTG+TGG - Chr6:26936519-26936538 MsG0680031795.01.T01:five_prime_UTR 40.0%
AGAAGGTGATATTCCAGTAC+GGG - Chr6:26935869-26935888 MsG0680031795.01.T01:intron 40.0%
AGATCCATCATCTCTCTCAT+TGG - Chr6:26936559-26936578 MsG0680031795.01.T01:five_prime_UTR 40.0%
AGCCTCGTCAAATGTCAAAA+AGG + Chr6:26935007-26935026 None:intergenic 40.0%
AGGCAACCAAAATTGCGATT+CGG + Chr6:26932005-26932024 None:intergenic 40.0%
AGTGCTCACTATATCCAACA+TGG + Chr6:26936082-26936101 None:intergenic 40.0%
ATATGCCAAGCTTGTAACAC+TGG - Chr6:26933897-26933916 MsG0680031795.01.T01:intron 40.0%
ATATGCTGCAAAGATCCTAG+TGG + Chr6:26934293-26934312 None:intergenic 40.0%
ATTAGAGTTATGCCATGGCT+GGG + Chr6:26936455-26936474 None:intergenic 40.0%
CAAGGAAAGAGATATGAGCA+AGG - Chr6:26935932-26935951 MsG0680031795.01.T01:intron 40.0%
CAGATAACATCCCTTGTACT+GGG + Chr6:26935773-26935792 None:intergenic 40.0%
CAGGAACCAAAATTGTGGTT+TGG - Chr6:26932285-26932304 MsG0680031795.01.T01:intron 40.0%
CATTCCAATGAGAGAGATGA+TGG + Chr6:26936566-26936585 None:intergenic 40.0%
CATTTGAACAGTGACACCAA+GGG + Chr6:26936953-26936972 None:intergenic 40.0%
CCAGTAACAATTGCAATTGC+AGG + Chr6:26934618-26934637 None:intergenic 40.0%
CCTCGTCAAATGTCAAAAAG+GGG + Chr6:26935005-26935024 None:intergenic 40.0%
CCTGCAATTGCAATTGTTAC+TGG - Chr6:26934615-26934634 MsG0680031795.01.T01:intron 40.0%
CGCTACATCATCAAATCAGA+TGG + Chr6:26932067-26932086 None:intergenic 40.0%
CGGGTATTTCATCTATTGGT+GGG - Chr6:26935231-26935250 MsG0680031795.01.T01:intron 40.0%
CTCAGGTATCATTACATTCC+TGG - Chr6:26935049-26935068 MsG0680031795.01.T01:intron 40.0%
CTGATGACTTTAGTCAGAGT+TGG + Chr6:26934431-26934450 None:intergenic 40.0%
GAAACGTAATGTGACCATGT+TGG - Chr6:26936065-26936084 MsG0680031795.01.T01:intron 40.0%
GACGTATTAGAGTTATGCCA+TGG + Chr6:26936460-26936479 None:intergenic 40.0%
GAGAAGGTGATATTCCAGTA+CGG - Chr6:26935868-26935887 MsG0680031795.01.T01:intron 40.0%
GAGTTGGACAACATGATTAG+CGG + Chr6:26934415-26934434 None:intergenic 40.0%
GCCTCGTCAAATGTCAAAAA+GGG + Chr6:26935006-26935025 None:intergenic 40.0%
GGTCATATCTCATCCAATGT+AGG + Chr6:26933727-26933746 None:intergenic 40.0%
GTCTTGCAATGGATGAGATA+TGG - Chr6:26933516-26933535 MsG0680031795.01.T01:three_prime_UTR 40.0%
GTGATTTGAGAATGAGAGGA+AGG + Chr6:26930840-26930859 None:intergenic 40.0%
GTGTATTGAGAGTCCTACAT+TGG - Chr6:26933711-26933730 MsG0680031795.01.T01:intron 40.0%
TAATACAGCAGGCAAGTGTA+AGG - Chr6:26936320-26936339 MsG0680031795.01.T01:intron 40.0%
TAGAATGTAGCTGCAACTGT+AGG + Chr6:26933940-26933959 None:intergenic 40.0%
TATTAGAGTTATGCCATGGC+TGG + Chr6:26936456-26936475 None:intergenic 40.0%
TATTTCAGTTGGGTCTCTGT+GGG - Chr6:26935305-26935324 MsG0680031795.01.T01:intron 40.0%
TCAAATGTCAAAAAGGGGAC+AGG + Chr6:26935000-26935019 None:intergenic 40.0%
TCATTTGAACAGTGACACCA+AGG + Chr6:26936954-26936973 None:intergenic 40.0%
TCCTACAATGTTGATGTCAG+AGG - Chr6:26935101-26935120 MsG0680031795.01.T01:intron 40.0%
TCCTCTGACATCAACATTGT+AGG + Chr6:26935105-26935124 None:intergenic 40.0%
TCGGGTATTTCATCTATTGG+TGG - Chr6:26935230-26935249 MsG0680031795.01.T01:intron 40.0%
TCTGTCTTTAGATTTGTCGG+TGG - Chr6:26935333-26935352 MsG0680031795.01.T01:intron 40.0%
TGGTCTATCGGATATGATTG+CGG - Chr6:26933867-26933886 MsG0680031795.01.T01:intron 40.0%
TGTCTGATAGGTGTAAGCTT+TGG - Chr6:26932386-26932405 MsG0680031795.01.T01:intron 40.0%
TTACCTGCATTTCAGAACTG+TGG - Chr6:26933236-26933255 MsG0680031795.01.T01:three_prime_UTR 40.0%
TTATTTCAGTTGGGTCTCTG+TGG - Chr6:26935304-26935323 MsG0680031795.01.T01:intron 40.0%
TTCAGAACTGTGGATCAACT+TGG - Chr6:26933246-26933265 MsG0680031795.01.T01:three_prime_UTR 40.0%
TTGTAAACGAGGAGTTTGTC+TGG - Chr6:26933847-26933866 MsG0680031795.01.T01:intron 40.0%
! ATTGGTTATGAGTTTTCCGG+AGG - Chr6:26931380-26931399 MsG0680031795.01.T01:intron 40.0%
! CACTGGAGCAACTTTTGAAT+GGG - Chr6:26934201-26934220 MsG0680031795.01.T01:intron 40.0%
! CTCTACCTTTTTCTCCATGT+GGG - Chr6:26936717-26936736 MsG0680031795.01.T01:five_prime_UTR 40.0%
! GAGAAGCACGTGATTGAAAA+TGG - Chr6:26931240-26931259 MsG0680031795.01.T01:intron 40.0%
! GCATCTAAGGTATCCACTTA+AGG - Chr6:26936985-26937004 MsG0680031795.01.T01:five_prime_UTR 40.0%
! GGAATGTCATTTGTTTACCC+TGG - Chr6:26936739-26936758 MsG0680031795.01.T01:five_prime_UTR 40.0%
! TCTACCTTTTTCTCCATGTG+GGG - Chr6:26936718-26936737 MsG0680031795.01.T01:five_prime_UTR 40.0%
! TCTCTACCTTTTTCTCCATG+TGG - Chr6:26936716-26936735 MsG0680031795.01.T01:five_prime_UTR 40.0%
! TGTGTTGATATGCACAAACC+TGG + Chr6:26934859-26934878 None:intergenic 40.0%
!! AATCTCACAAACCGGTTTTG+AGG - Chr6:26933573-26933592 MsG0680031795.01.T01:intron 40.0%
!! ATCTCACAAACCGGTTTTGA+GGG - Chr6:26933574-26933593 MsG0680031795.01.T01:intron 40.0%
!! CTTTCAAGTACTTTTTGGCG+TGG - Chr6:26935273-26935292 MsG0680031795.01.T01:intron 40.0%
!! GTAGGAATTTTAACCCGTAC+TGG + Chr6:26935885-26935904 None:intergenic 40.0%
!! GTCTTCCTTTGTTGTTTAGC+AGG - Chr6:26936477-26936496 MsG0680031795.01.T01:CDS 40.0%
!! TGTCTAGTTCTAGATGTGAG+GGG - Chr6:26933688-26933707 MsG0680031795.01.T01:intron 40.0%
!!! TACTTCCCTGTGTCATTTTG+GGG - Chr6:26935183-26935202 MsG0680031795.01.T01:intron 40.0%
AACAAGAACACGTACTTGGC+GGG + Chr6:26934336-26934355 None:intergenic 45.0%
AACTGTGGATCAACTTGGAG+TGG - Chr6:26933251-26933270 MsG0680031795.01.T01:three_prime_UTR 45.0%
AAGTGAGTGAACCCAGTACA+AGG - Chr6:26935759-26935778 MsG0680031795.01.T01:intron 45.0%
AGACAAATGCCTGCTCGATT+AGG - Chr6:26936401-26936420 MsG0680031795.01.T01:CDS 45.0%
AGCACGTGATTGAAAATGGG+AGG - Chr6:26931244-26931263 MsG0680031795.01.T01:intron 45.0%
AGGAAGAAGGAGATGAAGGA+GGG - Chr6:26931277-26931296 MsG0680031795.01.T01:intron 45.0%
AGTCACATCTGGTGTCTGAT+AGG - Chr6:26932374-26932393 MsG0680031795.01.T01:intron 45.0%
AGTCAGTGTTTCCTTGACGT+TGG - Chr6:26936270-26936289 MsG0680031795.01.T01:CDS 45.0%
AGTGAGTGAACCCAGTACAA+GGG - Chr6:26935760-26935779 MsG0680031795.01.T01:intron 45.0%
ATTAGGGTTACCTGAGATCC+AGG - Chr6:26934838-26934857 MsG0680031795.01.T01:intron 45.0%
ATTCGTGTTCTTCGAACCCT+TGG - Chr6:26936934-26936953 MsG0680031795.01.T01:five_prime_UTR 45.0%
ATTTGTTTACCCTGGATCCC+TGG - Chr6:26936747-26936766 MsG0680031795.01.T01:five_prime_UTR 45.0%
CAAAGAGATTGCATGGCGAT+TGG - Chr6:26934583-26934602 MsG0680031795.01.T01:intron 45.0%
CAACAAGAACACGTACTTGG+CGG + Chr6:26934337-26934356 None:intergenic 45.0%
CAAGTAACACCTAATCGAGC+AGG + Chr6:26936413-26936432 None:intergenic 45.0%
CAGGTATGGAAGGATGTTGA+TGG - Chr6:26934934-26934953 MsG0680031795.01.T01:intron 45.0%
CATCAACTCTCACCTTAGCA+AGG + Chr6:26936128-26936147 None:intergenic 45.0%
CATTCCCCACATGGAGAAAA+AGG + Chr6:26936725-26936744 None:intergenic 45.0%
CGAATTTCCGAAAAAAGCGG+CGG - Chr6:26931194-26931213 MsG0680031795.01.T01:intron 45.0%
GAAGAAGGCTTCAGAAGAAG+AGG + Chr6:26930914-26930933 None:intergenic 45.0%
GACTATCCCCAAAATGACAC+AGG + Chr6:26935192-26935211 None:intergenic 45.0%
GAGCAGAGAACTAATACAGC+AGG - Chr6:26936309-26936328 MsG0680031795.01.T01:intron 45.0%
GAGGAGTTTGTCTGGTCTAT+CGG - Chr6:26933855-26933874 MsG0680031795.01.T01:intron 45.0%
GATCTCTCAAGGTGCATCTA+AGG - Chr6:26936972-26936991 MsG0680031795.01.T01:five_prime_UTR 45.0%
GATTGAAAATGGGAGGAGTG+TGG - Chr6:26931251-26931270 MsG0680031795.01.T01:intron 45.0%
GCAGTAACAACATTGGGTAG+AGG - Chr6:26934779-26934798 MsG0680031795.01.T01:intron 45.0%
GCATCTGTTATCGAGTCACT+AGG - Chr6:26933653-26933672 MsG0680031795.01.T01:intron 45.0%
GCTGTTGCAAAGAGATTGCA+TGG - Chr6:26934576-26934595 MsG0680031795.01.T01:intron 45.0%
GGAATATCACCTTCTCTAGC+AGG + Chr6:26935864-26935883 None:intergenic 45.0%
GGAGAAAAAGCTGTGAGTTG+CGG - Chr6:26933059-26933078 MsG0680031795.01.T01:intron 45.0%
GTAACAACATTGGGTAGAGG+TGG - Chr6:26934782-26934801 MsG0680031795.01.T01:intron 45.0%
GTCTATGTAGTTCATCAGGG+AGG + Chr6:26936385-26936404 None:intergenic 45.0%
GTGAGAGTCTTCAAAATGCG+AGG + Chr6:26932159-26932178 None:intergenic 45.0%
GTGTTAAGCAAGACTTGGAC+AGG - Chr6:26935991-26936010 MsG0680031795.01.T01:intron 45.0%
GTTGAGGAAGAAGGAGATGA+AGG - Chr6:26931273-26931292 MsG0680031795.01.T01:intron 45.0%
TAGATTTGTCGGTGGTGATC+AGG - Chr6:26935341-26935360 MsG0680031795.01.T01:intron 45.0%
TATGCACAAACCTGGATCTC+AGG + Chr6:26934851-26934870 None:intergenic 45.0%
TCAGTACGGTTTCCTTGCTA+AGG - Chr6:26936113-26936132 MsG0680031795.01.T01:intron 45.0%
TCTATGAGACCTGCTAGAGA+AGG - Chr6:26935852-26935871 MsG0680031795.01.T01:intron 45.0%
TGCAATCTCTTTGCAACAGC+CGG + Chr6:26934576-26934595 None:intergenic 45.0%
TGGTTATCTGCACGGTTGAA+TGG - Chr6:26935156-26935175 MsG0680031795.01.T01:intron 45.0%
TGTGACCAGTGTTACAAGCT+TGG + Chr6:26933905-26933924 None:intergenic 45.0%
TGTTGTCGTTGAATGCGTTC+CGG - Chr6:26936165-26936184 MsG0680031795.01.T01:intron 45.0%
TTCAACCACTTACGCAGGTA+TGG - Chr6:26934920-26934939 MsG0680031795.01.T01:intron 45.0%
TTTGTTTACCCTGGATCCCT+GGG - Chr6:26936748-26936767 MsG0680031795.01.T01:five_prime_UTR 45.0%
! CAGTACGACGCATTTGAGAT+TGG - Chr6:26934498-26934517 MsG0680031795.01.T01:CDS 45.0%
! CCCCTTTTTGACATTTGACG+AGG - Chr6:26935002-26935021 MsG0680031795.01.T01:intron 45.0%
! CTTTGATGGATCCAACGTCA+AGG + Chr6:26936284-26936303 None:intergenic 45.0%
! GCACTGGAGCAACTTTTGAA+TGG - Chr6:26934200-26934219 MsG0680031795.01.T01:intron 45.0%
! GTTGGAGTTGGTTATCTGCA+CGG - Chr6:26935148-26935167 MsG0680031795.01.T01:intron 45.0%
! TTATGAGTTTTCCGGAGGAG+AGG - Chr6:26931385-26931404 MsG0680031795.01.T01:intron 45.0%
!! CATGTTTGGGTGGTGTTGAT+TGG - Chr6:26932707-26932726 MsG0680031795.01.T01:intron 45.0%
!! GATCCACAGTTCTGAAATGC+AGG + Chr6:26933242-26933261 None:intergenic 45.0%
!! GATGATGGAAGTTGCTGGAT+TGG - Chr6:26931362-26931381 MsG0680031795.01.T01:intron 45.0%
!! GCAATTGTTACTGGCTTCCT+TGG - Chr6:26934624-26934643 MsG0680031795.01.T01:intron 45.0%
!! GTCTAGTTCTAGATGTGAGG+GGG - Chr6:26933689-26933708 MsG0680031795.01.T01:intron 45.0%
!! GTGTTTTTGTTTCCCAGCCA+TGG - Chr6:26936440-26936459 MsG0680031795.01.T01:CDS 45.0%
!! TCTTCTGAAGCCTTCTTCTC+AGG - Chr6:26930916-26930935 MsG0680031795.01.T01:intron 45.0%
!! TGCGGTGTTACTAATGTCTC+TGG - Chr6:26933077-26933096 MsG0680031795.01.T01:intron 45.0%
!! TGTTACTGGCTTCCTTGGAA+AGG - Chr6:26934629-26934648 MsG0680031795.01.T01:intron 45.0%
!!! GGTCTAATTTTTGGCACCTC+TGG - Chr6:26935394-26935413 MsG0680031795.01.T01:intron 45.0%
!!! TGCTAGCTGCACCTCTTTTT+TGG - Chr6:26935619-26935638 MsG0680031795.01.T01:intron 45.0%
AAGGGGACAGGTTCTGCTTT+CGG + Chr6:26934988-26935007 None:intergenic 50.0%
ACCACTTACGCAGGTATGGA+AGG - Chr6:26934924-26934943 MsG0680031795.01.T01:intron 50.0%
ACTCGCATGCTTGGTCAGTA+CGG - Chr6:26936099-26936118 MsG0680031795.01.T01:intron 50.0%
ACTGCTCTTACCTGAGATGC+AGG + Chr6:26933130-26933149 None:intergenic 50.0%
ATAGTGAGCACTCGCATGCT+TGG - Chr6:26936090-26936109 MsG0680031795.01.T01:intron 50.0%
ATTCCTACAACCCGAAGCTC+CGG - Chr6:26935897-26935916 MsG0680031795.01.T01:intron 50.0%
CGGATGCAGAACCTGTGAAT+CGG + Chr6:26935829-26935848 None:intergenic 50.0%
CGTTGGATCCATCAAAGCTC+TGG - Chr6:26936287-26936306 MsG0680031795.01.T01:CDS 50.0%
CTAGCAGGTCTCATAGACTG+CGG + Chr6:26935849-26935868 None:intergenic 50.0%
GAAGGTCACGTGCAATGTGT+TGG - Chr6:26931218-26931237 MsG0680031795.01.T01:intron 50.0%
GAGGAAGAAGGAGATGAAGG+AGG - Chr6:26931276-26931295 MsG0680031795.01.T01:intron 50.0%
GGATGCAGAACCTGTGAATC+GGG + Chr6:26935828-26935847 None:intergenic 50.0%
TCAAGATCAACAGTGCCCCA+GGG + Chr6:26936767-26936786 None:intergenic 50.0%
TCCTTCCATACCTGCGTAAG+TGG + Chr6:26934928-26934947 None:intergenic 50.0%
TTCAAGATCAACAGTGCCCC+AGG + Chr6:26936768-26936787 None:intergenic 50.0%
TTGTTTACCCTGGATCCCTG+GGG - Chr6:26936749-26936768 MsG0680031795.01.T01:five_prime_UTR 50.0%
! AAATGGGAGGAGTGTGGTTG+AGG - Chr6:26931257-26931276 MsG0680031795.01.T01:intron 50.0%
! AGGAGTGTGGTTGAGGAAGA+AGG - Chr6:26931264-26931283 MsG0680031795.01.T01:intron 50.0%
! AGTGGTGGAAGAAGGAGGTT+AGG + Chr6:26931129-26931148 None:intergenic 50.0%
! GCTGCTGAGCTAGCTTACTT+TGG - Chr6:26935024-26935043 MsG0680031795.01.T01:intron 50.0%
! TCTCTGCTCCAGAGCTTTGA+TGG + Chr6:26936298-26936317 None:intergenic 50.0%
! TTGGAGAGTGCATGTCCACT+AGG - Chr6:26934275-26934294 MsG0680031795.01.T01:intron 50.0%
!! GAGAGGATGATGGAAGTTGC+TGG - Chr6:26931357-26931376 MsG0680031795.01.T01:intron 50.0%
!! GCTAGCTTACTTTGGTGCTC+AGG - Chr6:26935032-26935051 MsG0680031795.01.T01:intron 50.0%
!! TTCCTTGTGATGAGAGTGCC+CGG + Chr6:26935919-26935938 None:intergenic 50.0%
!!! ACCTTCACCGCCGCTTTTTT+CGG + Chr6:26931204-26931223 None:intergenic 50.0%
ACAACAATCGGCCTCTCCTC+CGG + Chr6:26931399-26931418 None:intergenic 55.0%
AGGGGACAGGTTCTGCTTTC+GGG + Chr6:26934987-26935006 None:intergenic 55.0%
TCCAGTGCTTCCAGATGCTC+TGG + Chr6:26934188-26934207 None:intergenic 55.0%
TCCGAAAAAAGCGGCGGTGA+AGG - Chr6:26931200-26931219 MsG0680031795.01.T01:intron 55.0%
TCTATGCTGTTGCTGCCACG+TGG + Chr6:26931154-26931173 None:intergenic 55.0%
TGGTGGTTCGTCAGTTGCGT+CGG - Chr6:26931332-26931351 MsG0680031795.01.T01:intron 55.0%
TTCCTACAACCCGAAGCTCC+GGG - Chr6:26935898-26935917 MsG0680031795.01.T01:intron 55.0%
TTCTTCCACCACTTGCCACG+TGG - Chr6:26931136-26931155 MsG0680031795.01.T01:intron 55.0%
! ACGTGGCAAGTGGTGGAAGA+AGG + Chr6:26931137-26931156 None:intergenic 55.0%
! TCCAGAGCATCTGGAAGCAC+TGG - Chr6:26934184-26934203 MsG0680031795.01.T01:intron 55.0%
! TGGCAAGTGGTGGAAGAAGG+AGG + Chr6:26931134-26931153 None:intergenic 55.0%
AACAGTGCCCCAGGGATCCA+GGG + Chr6:26936759-26936778 None:intergenic 60.0%
CTCCGGGCACTCTCATCACA+AGG - Chr6:26935914-26935933 MsG0680031795.01.T01:intron 60.0%
TGGTTCGTCAGTTGCGTCGG+CGG - Chr6:26931335-26931354 MsG0680031795.01.T01:intron 60.0%
TGTTGCTGCCACGTGGCAAG+TGG + Chr6:26931147-26931166 None:intergenic 60.0%
!! ATGAGAGTGCCCGGAGCTTC+GGG + Chr6:26935910-26935929 None:intergenic 60.0%
!! GATGAGAGTGCCCGGAGCTT+CGG + Chr6:26935911-26935930 None:intergenic 60.0%
CAACAGTGCCCCAGGGATCC+AGG + Chr6:26936760-26936779 None:intergenic 65.0%
TGCTGCCACGTGGCAAGTGG+TGG + Chr6:26931144-26931163 None:intergenic 65.0%
! TGCGTCGGCGGAGAGGATGA+TGG - Chr6:26931347-26931366 MsG0680031795.01.T01:intron 65.0%
!! TGCCCGGAGCTTCGGGTTGT+AGG + Chr6:26935903-26935922 None:intergenic 65.0%
! CGTCAGTTGCGTCGGCGGAG+AGG - Chr6:26931340-26931359 MsG0680031795.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 26930831 26937005 26930831 ID=MsG0680031795.01;Name=MsG0680031795.01
Chr6 mRNA 26930831 26937005 26930831 ID=MsG0680031795.01.T01;Parent=MsG0680031795.01;Name=MsG0680031795.01.T01;_AED=0.42;_eAED=0.46;_QI=413|0.54|0.5|1|0.63|0.58|12|729|124
Chr6 exon 26930831 26930904 26930831 ID=MsG0680031795.01.T01:exon:8492;Parent=MsG0680031795.01.T01
Chr6 exon 26931686 26931794 26931686 ID=MsG0680031795.01.T01:exon:8491;Parent=MsG0680031795.01.T01
Chr6 exon 26931883 26931999 26931883 ID=MsG0680031795.01.T01:exon:8490;Parent=MsG0680031795.01.T01
Chr6 exon 26932783 26932899 26932783 ID=MsG0680031795.01.T01:exon:8489;Parent=MsG0680031795.01.T01
Chr6 exon 26932977 26933072 26932977 ID=MsG0680031795.01.T01:exon:8488;Parent=MsG0680031795.01.T01
Chr6 exon 26933186 26933359 26933186 ID=MsG0680031795.01.T01:exon:8487;Parent=MsG0680031795.01.T01
Chr6 exon 26933496 26933539 26933496 ID=MsG0680031795.01.T01:exon:8486;Parent=MsG0680031795.01.T01
Chr6 exon 26934488 26934585 26934488 ID=MsG0680031795.01.T01:exon:8485;Parent=MsG0680031795.01.T01
Chr6 exon 26934698 26934780 26934698 ID=MsG0680031795.01.T01:exon:8484;Parent=MsG0680031795.01.T01
Chr6 exon 26936255 26936312 26936255 ID=MsG0680031795.01.T01:exon:8483;Parent=MsG0680031795.01.T01
Chr6 exon 26936379 26936818 26936379 ID=MsG0680031795.01.T01:exon:8482;Parent=MsG0680031795.01.T01
Chr6 exon 26936899 26937005 26936899 ID=MsG0680031795.01.T01:exon:8481;Parent=MsG0680031795.01.T01
Chr6 five_prime_UTR 26936899 26937005 26936899 ID=MsG0680031795.01.T01:five_prime_utr;Parent=MsG0680031795.01.T01
Chr6 five_prime_UTR 26936513 26936818 26936513 ID=MsG0680031795.01.T01:five_prime_utr;Parent=MsG0680031795.01.T01
Chr6 CDS 26936379 26936512 26936379 ID=MsG0680031795.01.T01:cds;Parent=MsG0680031795.01.T01
Chr6 CDS 26936255 26936312 26936255 ID=MsG0680031795.01.T01:cds;Parent=MsG0680031795.01.T01
Chr6 CDS 26934698 26934780 26934698 ID=MsG0680031795.01.T01:cds;Parent=MsG0680031795.01.T01
Chr6 CDS 26934488 26934585 26934488 ID=MsG0680031795.01.T01:cds;Parent=MsG0680031795.01.T01
Chr6 CDS 26933538 26933539 26933538 ID=MsG0680031795.01.T01:cds;Parent=MsG0680031795.01.T01
Chr6 three_prime_UTR 26933496 26933537 26933496 ID=MsG0680031795.01.T01:three_prime_utr;Parent=MsG0680031795.01.T01
Chr6 three_prime_UTR 26933186 26933359 26933186 ID=MsG0680031795.01.T01:three_prime_utr;Parent=MsG0680031795.01.T01
Chr6 three_prime_UTR 26932977 26933072 26932977 ID=MsG0680031795.01.T01:three_prime_utr;Parent=MsG0680031795.01.T01
Chr6 three_prime_UTR 26932783 26932899 26932783 ID=MsG0680031795.01.T01:three_prime_utr;Parent=MsG0680031795.01.T01
Chr6 three_prime_UTR 26931883 26931999 26931883 ID=MsG0680031795.01.T01:three_prime_utr;Parent=MsG0680031795.01.T01
Chr6 three_prime_UTR 26931686 26931794 26931686 ID=MsG0680031795.01.T01:three_prime_utr;Parent=MsG0680031795.01.T01
Chr6 three_prime_UTR 26930831 26930904 26930831 ID=MsG0680031795.01.T01:three_prime_utr;Parent=MsG0680031795.01.T01
Gene Sequence

>MsG0680031795.01.T01

ATGAAGTTTGGTGGTTCGTCAGTTGCGTCGGCGGAGAGGATGATGGAAGTTGCTGGATTGGTTATGAGTTTTCCGGAGGAGAGGCCGATTGTTGTTCTTTCTGCTATGGGAAAAACTACTAACAAGCTTTGCTGTGTCAGATACGTGTCATTGACATTGAAAGTAATCTTCAATGTTAGATACGTGTCATTGGCTGGAGAAAAAGCTGTGAGTTGCGGTGTTACTAATGTCTCTGGCATTGAAGAGCTTAGCTTTATAAAAGACCTGCATCTCAGAACTGTGGATCAACTTGGAGTGGACATATCTATTATTGAAAGTGAGTTATTTCTTTTGCTCACAAAAATAGTTTTGATTATTAGATTGCATGATTTGTGA
Protein sequence

>MsG0680031795.01.T01

MKFGGSSVASAERMMEVAGLVMSFPEERPIVVLSAMGKTTNKLCCVRYVSLTLKVIFNVRYVSLAGEKAVSCGVTNVSGIEELSFIKDLHLRTVDQLGVDISIIESELFLLLTKIVLIIRLHDL*