AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024193.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024193.01.T01 MTR_5g007050 87.266 267 7 2 18 263 1 261 8.35e-173 477
MsG0580024193.01.T01 MTR_6g046960 87.266 267 7 2 18 263 1 261 1.94e-172 476
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024193.01.T01 AT1G64980 71.898 274 46 4 11 263 14 277 6.36e-144 405
MsG0580024193.01.T01 AT1G64980 73.408 267 40 4 18 263 1 257 1.84e-143 403
MsG0580024193.01.T01 AT1G64980 73.408 267 40 4 18 263 1 257 1.84e-143 403

Find 62 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAGATCTGATTGCTTAAT+TGG 0.085095 5:+1777301 None:intergenic
TCCATCTTTGTAGTCTCTTT+TGG 0.193307 5:+1777073 None:intergenic
ATTGAAGACCAATTCTTTCT+AGG 0.195136 5:+1777028 None:intergenic
TCTCTATTTAGCTGATATTA+AGG 0.242104 5:-1777155 MsG0580024193.01.T01:CDS
ACGTGAAGACATTGCATTTC+AGG 0.259904 5:-1777374 MsG0580024193.01.T01:CDS
ATTTCCTTGAAGGACATAAT+AGG 0.275347 5:-1776872 MsG0580024193.01.T01:CDS
AAGATTCTTAACACCTAGTT+TGG 0.296665 5:-1777218 MsG0580024193.01.T01:CDS
TGGCTTGAGGATGATGAAAT+TGG 0.336305 5:-1776915 MsG0580024193.01.T01:CDS
TTTAGCTGATATTAAGGAAT+TGG 0.346940 5:-1777149 MsG0580024193.01.T01:CDS
CTTTCCTTCATAGGTTTCAA+TGG 0.348106 5:-1776935 MsG0580024193.01.T01:CDS
GAGGGCCGTGGTTTGAGGCT+TGG 0.352682 5:-1776797 MsG0580024193.01.T01:CDS
AGACTGGTGCTTTCCTTCAT+AGG 0.356440 5:-1776944 MsG0580024193.01.T01:CDS
TCGGGGAGGGCCGTGGTTTG+AGG 0.366626 5:-1776802 MsG0580024193.01.T01:CDS
ACGGCCCTCCCCGAGTATAA+TGG 0.377630 5:+1776811 None:intergenic
ATTGCGAATTTGCTGATCTA+TGG 0.387264 5:-1776770 MsG0580024193.01.T01:CDS
TTTCCTTGAAGGACATAATA+GGG 0.389168 5:-1776871 MsG0580024193.01.T01:CDS
TACTAGTTGGTAATGGTGAT+TGG 0.390769 5:+1777470 None:intergenic
TAGAAAGAATTGGTCTTCAA+TGG 0.393256 5:-1777026 MsG0580024193.01.T01:intron
CAGCCCTATTATGTCCTTCA+AGG 0.399988 5:+1776868 None:intergenic
TTAATTGGTATGATCTCAAC+AGG 0.402966 5:+1777316 None:intergenic
TCAAGGTTGGGCTATGTTTG+TGG 0.418527 5:-1777188 MsG0580024193.01.T01:CDS
CCTAGTTTGGCAAATTATCA+AGG 0.430049 5:-1777205 MsG0580024193.01.T01:CDS
CCTTGATAATTTGCCAAACT+AGG 0.430154 5:+1777205 None:intergenic
TTTGGCAAATTATCAAGGTT+GGG 0.439482 5:-1777200 MsG0580024193.01.T01:CDS
AAACCCTTCAAGATCTTTGT+GGG 0.439682 5:-1777406 MsG0580024193.01.T01:CDS
CTGTGTATCCTAGAAAGAAT+TGG 0.452193 5:-1777036 MsG0580024193.01.T01:CDS
TTTGTTTGGAATTTCCTTGA+AGG 0.455406 5:-1776882 MsG0580024193.01.T01:CDS
CGAGTATAATGGATAGCCTT+AGG 0.455563 5:+1776822 None:intergenic
GTTTGGCAAATTATCAAGGT+TGG 0.457948 5:-1777201 MsG0580024193.01.T01:CDS
GAAACCCTTCAAGATCTTTG+TGG 0.462717 5:-1777407 MsG0580024193.01.T01:CDS
ATTCCATTACCATTACTAGT+TGG 0.470434 5:+1777457 None:intergenic
TCAAGGAAATTCCAAACAAA+AGG 0.473734 5:+1776885 None:intergenic
ATTATACTCGGGGAGGGCCG+TGG 0.478358 5:-1776809 MsG0580024193.01.T01:CDS
CTAAGGCTATCCATTATACT+CGG 0.478464 5:-1776821 MsG0580024193.01.T01:CDS
GTCGTCATTCAATCATGAAA+AGG 0.493012 5:-1777348 MsG0580024193.01.T01:CDS
TTACCATTACTAGTTGGTAA+TGG 0.495217 5:+1777463 None:intergenic
TCCAAAAGAGACTACAAAGA+TGG 0.508455 5:-1777074 MsG0580024193.01.T01:CDS
GGAATTGGTAGATTTGATTG+AGG 0.511326 5:-1777134 MsG0580024193.01.T01:CDS
TTACCAACTAGTAATGGTAA+TGG 0.521531 5:-1777460 MsG0580024193.01.T01:CDS
CGTCGTTTGTGACCATCATC+CGG 0.521785 5:+1780047 None:intergenic
GGTCTTTATTGGCGTGAAAG+AGG 0.522858 5:-1777271 MsG0580024193.01.T01:CDS
ATTGACGCTCAGCCGGATGA+TGG 0.534771 5:-1780059 MsG0580024193.01.T01:intron
TCGGGAGATTGACGCTCAGC+CGG 0.536969 5:-1780066 MsG0580024193.01.T01:CDS
CAAGCCATTGAAACCTATGA+AGG 0.539155 5:+1776931 None:intergenic
ATAACCCACAAAGATCTTGA+AGG 0.541294 5:+1777402 None:intergenic
GTCCATCGTTCAACTCAGTC+GGG 0.543892 5:-1780084 MsG0580024193.01.T01:CDS
TGTCCATCGTTCAACTCAGT+CGG 0.547867 5:-1780085 MsG0580024193.01.T01:CDS
TCATAGGTTTCAATGGCTTG+AGG 0.551220 5:-1776928 MsG0580024193.01.T01:CDS
TTCTTCCAAGCCTCAAACCA+CGG 0.559243 5:+1776792 None:intergenic
TAAGGCTATCCATTATACTC+GGG 0.565710 5:-1776820 MsG0580024193.01.T01:CDS
TGATCTATGGCTGAATGAGA+TGG 0.566426 5:-1776757 MsG0580024193.01.T01:CDS
TAACCCACAAAGATCTTGAA+GGG 0.577120 5:+1777403 None:intergenic
TGATCCAACTACTTCACCTA+AGG 0.585896 5:-1776838 MsG0580024193.01.T01:CDS
TCACCATTACCAACTAGTAA+TGG 0.590252 5:-1777466 MsG0580024193.01.T01:CDS
ATAGCCTTAGGTGAAGTAGT+TGG 0.594477 5:+1776834 None:intergenic
AAAGAGACTACAAAGATGGA+TGG 0.623848 5:-1777070 MsG0580024193.01.T01:CDS
CTCCCGACTGAGTTGAACGA+TGG 0.650326 5:+1780082 None:intergenic
GCTATCCATTATACTCGGGG+AGG 0.652245 5:-1776816 MsG0580024193.01.T01:CDS
ACAGAGATGAGTTTGAGCAA+TGG 0.659058 5:-1777499 MsG0580024193.01.T01:intron
CTATCCATTATACTCGGGGA+GGG 0.668674 5:-1776815 MsG0580024193.01.T01:CDS
AAGGCTATCCATTATACTCG+GGG 0.680190 5:-1776819 MsG0580024193.01.T01:CDS
TGAAATGCAATGTCTTCACG+TGG 0.692922 5:+1777376 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAAAGATTAAAAACTT+GGG + Chr5:1777741-1777760 None:intergenic 10.0%
!! CTATTATTATAATTATAAAG+AGG + Chr5:1778323-1778342 None:intergenic 10.0%
!! TTTATAATTATAATAATAGC+TGG - Chr5:1778324-1778343 MsG0580024193.01.T01:intron 10.0%
!!! GTTTAATCTATTTTTTTTTA+AGG - Chr5:1777558-1777577 MsG0580024193.01.T01:intron 10.0%
!!! TAAGCAAATTTTTATTTTTT+AGG + Chr5:1778015-1778034 None:intergenic 10.0%
!!! TTTTTTTTATATGATCAAAT+GGG - Chr5:1779048-1779067 MsG0580024193.01.T01:intron 10.0%
!! AGAAAAAAAACAACAAATTA+AGG + Chr5:1779279-1779298 None:intergenic 15.0%
!! ATTTGAATTATTACAACAAT+TGG - Chr5:1778984-1779003 MsG0580024193.01.T01:intron 15.0%
!! GATTTAAAAGATTAAAAACT+TGG + Chr5:1777742-1777761 None:intergenic 15.0%
!! GCTTATAAATTTAATGAATA+AGG + Chr5:1777892-1777911 None:intergenic 15.0%
!! TTAAGTTTCAAAGAATATAT+TGG - Chr5:1777201-1777220 MsG0580024193.01.T01:CDS 15.0%
!! TTTAAAAGATTAAAAACTTG+GGG + Chr5:1777740-1777759 None:intergenic 15.0%
!! TTTATTGAATATGAATACTT+TGG + Chr5:1777960-1777979 None:intergenic 15.0%
!! TTTGAATTATTACAACAATT+GGG - Chr5:1778882-1778901 MsG0580024193.01.T01:intron 15.0%
!!! AATTGGTTTATCTTTTTAAT+TGG + Chr5:1778275-1778294 None:intergenic 15.0%
!!! ATAAAATCAAAATTGATTTG+TGG + Chr5:1778171-1778190 None:intergenic 15.0%
!!! ATTATCAGATTTTTCTTTTT+TGG + Chr5:1780086-1780105 None:intergenic 15.0%
!!! ATTCGATCTATTTTTTTTAA+AGG - Chr5:1777506-1777525 MsG0580024193.01.T01:intron 15.0%
!!! GTTTTTTTTATATGATCAAA+TGG - Chr5:1779047-1779066 MsG0580024193.01.T01:intron 15.0%
!!! TAATACAGATGTTTTTTTTT+TGG + Chr5:1777485-1777504 None:intergenic 15.0%
!!! TAGATTTTTTTTGAAGTAAT+GGG - Chr5:1778371-1778390 MsG0580024193.01.T01:intron 15.0%
!!! TGATTTTTTTAATAACACAT+GGG + Chr5:1777448-1777467 None:intergenic 15.0%
!!! TTTAATCTTTTAAATCCAAA+TGG - Chr5:1777746-1777765 MsG0580024193.01.T01:intron 15.0%
!!! TTTGTTATAATTAACATTTG+AGG - Chr5:1778036-1778055 MsG0580024193.01.T01:intron 15.0%
!!! TTTTTTCTATATGATCAAAT+GGG - Chr5:1778943-1778962 MsG0580024193.01.T01:intron 15.0%
!!! TTTTTTGTATATGATCAAAT+GGG - Chr5:1778842-1778861 MsG0580024193.01.T01:intron 15.0%
!! AGGAAAAAAAAACATGATTA+AGG + Chr5:1778303-1778322 None:intergenic 20.0%
!! CTTTGAATTATTACAACAAT+TGG - Chr5:1778881-1778900 MsG0580024193.01.T01:intron 20.0%
!! GAGAATATGTATAATTGATT+TGG - Chr5:1777273-1777292 MsG0580024193.01.T01:CDS 20.0%
!! TATCACATTATTAAAACAGT+TGG - Chr5:1779157-1779176 MsG0580024193.01.T01:intron 20.0%
!! TTATTACTAAATCAACCATT+TGG + Chr5:1777764-1777783 None:intergenic 20.0%
!!! ACATTTTAATGTCAACATTT+TGG - Chr5:1777372-1777391 MsG0580024193.01.T01:CDS 20.0%
!!! GTAGATTTTTTTTGAAGTAA+TGG - Chr5:1778370-1778389 MsG0580024193.01.T01:intron 20.0%
!!! GTGATTTTTTTAATAACACA+TGG + Chr5:1777449-1777468 None:intergenic 20.0%
!!! GTTTTTTCTATATGATCAAA+TGG - Chr5:1778942-1778961 MsG0580024193.01.T01:intron 20.0%
!!! GTTTTTTGTATATGATCAAA+TGG - Chr5:1778841-1778860 MsG0580024193.01.T01:intron 20.0%
!!! TATACAACTTTTTATATTGC+CGG + Chr5:1777607-1777626 None:intergenic 20.0%
!!! TTTGTTTTCTTTGATGTATA+AGG - Chr5:1778735-1778754 MsG0580024193.01.T01:intron 20.0%
! ATATTCTATAATCCAGCTAT+TGG - Chr5:1778420-1778439 MsG0580024193.01.T01:intron 25.0%
! GAGAATCTATATAGTTGATT+CGG + Chr5:1777064-1777083 None:intergenic 25.0%
! GTTGGAATTAAGTTAATTCA+TGG - Chr5:1776933-1776952 MsG0580024193.01.T01:CDS 25.0%
! TAATTACCAGAAAGAAAGAA+AGG + Chr5:1778669-1778688 None:intergenic 25.0%
! TCTCTATTTAGCTGATATTA+AGG - Chr5:1779644-1779663 MsG0580024193.01.T01:intron 25.0%
! TGGTATAAGAGTAAAACAAT+GGG - Chr5:1778344-1778363 MsG0580024193.01.T01:intron 25.0%
! TTTAGCTGATATTAAGGAAT+TGG - Chr5:1779650-1779669 MsG0580024193.01.T01:intron 25.0%
!! ACATGATTAAGGCATTAAAT+TGG + Chr5:1778292-1778311 None:intergenic 25.0%
!! TCTCTAAAAGAACAAATCAA+TGG + Chr5:1779105-1779124 None:intergenic 25.0%
!! TTACAACAATTGGGTTATTT+TGG - Chr5:1778891-1778910 MsG0580024193.01.T01:intron 25.0%
!! TTTTTCTGTCATGATCAAAT+GGG - Chr5:1779220-1779239 MsG0580024193.01.T01:intron 25.0%
!!! ATGTAGTGTCTTTATTTTGT+TGG - Chr5:1776915-1776934 MsG0580024193.01.T01:CDS 25.0%
!!! TTTTTAGTAAACCACTCTAT+TGG - Chr5:1778130-1778149 MsG0580024193.01.T01:intron 25.0%
!!! TTTTTTCTGTCATGATCAAA+TGG - Chr5:1779219-1779238 MsG0580024193.01.T01:intron 25.0%
!!! TTTTTTTGAAGTAATGGGTT+AGG - Chr5:1778376-1778395 MsG0580024193.01.T01:intron 25.0%
AAGATTCTTAACACCTAGTT+TGG - Chr5:1779581-1779600 MsG0580024193.01.T01:intron 30.0%
ATAAGAGTAAAACAATGGGT+AGG - Chr5:1778348-1778367 MsG0580024193.01.T01:intron 30.0%
ATACTGTATCGAGTAAATCT+AGG + Chr5:1778510-1778529 None:intergenic 30.0%
ATCGCATTATTACAACAACT+GGG - Chr5:1778781-1778800 MsG0580024193.01.T01:intron 30.0%
ATTCCATTACCATTACTAGT+TGG + Chr5:1779345-1779364 None:intergenic 30.0%
ATTGAAACTTATCAGTTGGT+AGG - Chr5:1777169-1777188 MsG0580024193.01.T01:CDS 30.0%
ATTGAAGACCAATTCTTTCT+AGG + Chr5:1779774-1779793 None:intergenic 30.0%
ATTTCCTTGAAGGACATAAT+AGG - Chr5:1779927-1779946 MsG0580024193.01.T01:intron 30.0%
CCAATTGAATGAAATGTGAA+AGG + Chr5:1778700-1778719 None:intergenic 30.0%
CCTTTCACATTTCATTCAAT+TGG - Chr5:1778697-1778716 MsG0580024193.01.T01:intron 30.0%
CTGGTATAAGAGTAAAACAA+TGG - Chr5:1778343-1778362 MsG0580024193.01.T01:intron 30.0%
GTCAATTGAAACTTATCAGT+TGG - Chr5:1777165-1777184 MsG0580024193.01.T01:CDS 30.0%
TACTACCTAAACATCTTCAT+TGG + Chr5:1776890-1776909 None:intergenic 30.0%
TACTGTATCGAGTAAATCTA+GGG + Chr5:1778509-1778528 None:intergenic 30.0%
TATATTGCAATACCAATAGC+TGG + Chr5:1778435-1778454 None:intergenic 30.0%
TATATTTACCTCATTCCAAG+AGG + Chr5:1777809-1777828 None:intergenic 30.0%
TATCGCATTATTACAACAAC+TGG - Chr5:1778780-1778799 MsG0580024193.01.T01:intron 30.0%
TCAAGGAAATTCCAAACAAA+AGG + Chr5:1779917-1779936 None:intergenic 30.0%
TCACTACTCATCTTATATGA+GGG - Chr5:1777240-1777259 MsG0580024193.01.T01:CDS 30.0%
TGAGAAAAAGTGGTCTTTAT+TGG - Chr5:1779517-1779536 MsG0580024193.01.T01:intron 30.0%
TGAGTTTAATCTATGTACAC+CGG - Chr5:1777585-1777604 MsG0580024193.01.T01:intron 30.0%
TTAATTGGTATGATCTCAAC+AGG + Chr5:1779486-1779505 None:intergenic 30.0%
TTACCAACTAGTAATGGTAA+TGG - Chr5:1779339-1779358 MsG0580024193.01.T01:intron 30.0%
TTTCCTTGAAGGACATAATA+GGG - Chr5:1779928-1779947 MsG0580024193.01.T01:intron 30.0%
TTTGGCAAATTATCAAGGTT+GGG - Chr5:1779599-1779618 MsG0580024193.01.T01:intron 30.0%
! TTGAAACTTATCAGTTGGTA+GGG - Chr5:1777170-1777189 MsG0580024193.01.T01:CDS 30.0%
! TTTGTTTGGAATTTCCTTGA+AGG - Chr5:1779917-1779936 MsG0580024193.01.T01:intron 30.0%
!! TAGAAAGAATTGGTCTTCAA+TGG - Chr5:1779773-1779792 MsG0580024193.01.T01:intron 30.0%
!! TGTGATTGATTTGATGCTAT+TGG + Chr5:1778484-1778503 None:intergenic 30.0%
!! TTACCATTACTAGTTGGTAA+TGG + Chr5:1779339-1779358 None:intergenic 30.0%
!!! TCAATGGTTTTGTATAACTG+TGG - Chr5:1779789-1779808 MsG0580024193.01.T01:intron 30.0%
AAACCCTTCAAGATCTTTGT+GGG - Chr5:1779393-1779412 MsG0580024193.01.T01:intron 35.0%
AAAGACAATCACCAATAGAG+TGG + Chr5:1778144-1778163 None:intergenic 35.0%
AAAGAGACTACAAAGATGGA+TGG - Chr5:1779729-1779748 MsG0580024193.01.T01:intron 35.0%
AACTCAAAAGAACAATCGAC+TGG + Chr5:1777541-1777560 None:intergenic 35.0%
AGGAACATGTTCTCGATATT+TGG - Chr5:1776783-1776802 MsG0580024193.01.T01:CDS 35.0%
ATAACCCACAAAGATCTTGA+AGG + Chr5:1779400-1779419 None:intergenic 35.0%
ATGATGTTGCAACATTTCGT+TGG - Chr5:1777654-1777673 MsG0580024193.01.T01:intron 35.0%
CAATCAGATCTGAGAAAAAG+TGG - Chr5:1779507-1779526 MsG0580024193.01.T01:intron 35.0%
CCTAGTTTGGCAAATTATCA+AGG - Chr5:1779594-1779613 MsG0580024193.01.T01:intron 35.0%
CTAAGGCTATCCATTATACT+CGG - Chr5:1779978-1779997 MsG0580024193.01.T01:intron 35.0%
CTCAGATCTGATTGCTTAAT+TGG + Chr5:1779501-1779520 None:intergenic 35.0%
CTGTGTATCCTAGAAAGAAT+TGG - Chr5:1779763-1779782 MsG0580024193.01.T01:intron 35.0%
CTTTCCTTCATAGGTTTCAA+TGG - Chr5:1779864-1779883 MsG0580024193.01.T01:intron 35.0%
GGAATTGGTAGATTTGATTG+AGG - Chr5:1779665-1779684 MsG0580024193.01.T01:intron 35.0%
GTCACTACTCATCTTATATG+AGG - Chr5:1777239-1777258 MsG0580024193.01.T01:CDS 35.0%
GTCGTCATTCAATCATGAAA+AGG - Chr5:1779451-1779470 MsG0580024193.01.T01:intron 35.0%
GTTTGGCAAATTATCAAGGT+TGG - Chr5:1779598-1779617 MsG0580024193.01.T01:intron 35.0%
TAACCCACAAAGATCTTGAA+GGG + Chr5:1779399-1779418 None:intergenic 35.0%
TAAGGCTATCCATTATACTC+GGG - Chr5:1779979-1779998 MsG0580024193.01.T01:intron 35.0%
TACCAGAAAGAAAGAAAGGA+GGG + Chr5:1778665-1778684 None:intergenic 35.0%
TCACCATTACCAACTAGTAA+TGG - Chr5:1779333-1779352 MsG0580024193.01.T01:intron 35.0%
TCCAAAAGAGACTACAAAGA+TGG - Chr5:1779725-1779744 MsG0580024193.01.T01:intron 35.0%
TTACCAGAAAGAAAGAAAGG+AGG + Chr5:1778666-1778685 None:intergenic 35.0%
TTAGAAGAGAAAGAGAGAGA+GGG + Chr5:1778605-1778624 None:intergenic 35.0%
TTCGTCCAATGAAGATGTTT+AGG - Chr5:1776882-1776901 MsG0580024193.01.T01:CDS 35.0%
TTTAGAAGAGAAAGAGAGAG+AGG + Chr5:1778606-1778625 None:intergenic 35.0%
! CCTTGATAATTTGCCAAACT+AGG + Chr5:1779597-1779616 None:intergenic 35.0%
! TCCATCTTTGTAGTCTCTTT+TGG + Chr5:1779729-1779748 None:intergenic 35.0%
! TTGGACTTGTTTGGAAAAAG+AGG + Chr5:1778632-1778651 None:intergenic 35.0%
!! ATTGCGAATTTGCTGATCTA+TGG - Chr5:1780029-1780048 MsG0580024193.01.T01:intron 35.0%
!! GAATACTTTGGAGTAGATAG+TGG + Chr5:1777948-1777967 None:intergenic 35.0%
!! TAATGGGTTAGGTAGATGAT+TGG - Chr5:1778387-1778406 MsG0580024193.01.T01:intron 35.0%
!! TACTAGTTGGTAATGGTGAT+TGG + Chr5:1779332-1779351 None:intergenic 35.0%
!! TCAAATTGTTGACTGACTTG+CGG - Chr5:1777919-1777938 MsG0580024193.01.T01:intron 35.0%
!!! TTGGTTCTGTACCTTTTGTT+TGG - Chr5:1779903-1779922 MsG0580024193.01.T01:intron 35.0%
!!! TTTCTTTTTTGGCTTGAGCA+AGG + Chr5:1780075-1780094 None:intergenic 35.0%
AACCCATGAAGGCTTCATTT+GGG - Chr5:1777402-1777421 MsG0580024193.01.T01:CDS 40.0%
AAGGCTATCCATTATACTCG+GGG - Chr5:1779980-1779999 MsG0580024193.01.T01:intron 40.0%
ACAGAGATGAGTTTGAGCAA+TGG - Chr5:1779300-1779319 MsG0580024193.01.T01:intron 40.0%
ACGTGAAGACATTGCATTTC+AGG - Chr5:1779425-1779444 MsG0580024193.01.T01:intron 40.0%
AGGAGTAGAACCTTGTTCTT+AGG + Chr5:1779819-1779838 None:intergenic 40.0%
ATACCCAAATGAAGCCTTCA+TGG + Chr5:1777408-1777427 None:intergenic 40.0%
ATGTTAGTCCTCTTGGAATG+AGG - Chr5:1777798-1777817 MsG0580024193.01.T01:intron 40.0%
CAAGCCATTGAAACCTATGA+AGG + Chr5:1779871-1779890 None:intergenic 40.0%
CATTGGACGAATCAAACTCT+TGG + Chr5:1776873-1776892 None:intergenic 40.0%
GAAACCCTTCAAGATCTTTG+TGG - Chr5:1779392-1779411 MsG0580024193.01.T01:intron 40.0%
TACCCAAATGAAGCCTTCAT+GGG + Chr5:1777407-1777426 None:intergenic 40.0%
TCATAGGTTTCAATGGCTTG+AGG - Chr5:1779871-1779890 MsG0580024193.01.T01:intron 40.0%
TGAAATGCAATGTCTTCACG+TGG + Chr5:1779426-1779445 None:intergenic 40.0%
TGATCCAACTACTTCACCTA+AGG - Chr5:1779961-1779980 MsG0580024193.01.T01:intron 40.0%
TGATCTATGGCTGAATGAGA+TGG - Chr5:1780042-1780061 MsG0580024193.01.T01:intron 40.0%
TGGCTTGAGGATGATGAAAT+TGG - Chr5:1779884-1779903 MsG0580024193.01.T01:intron 40.0%
! ATAGCCTTAGGTGAAGTAGT+TGG + Chr5:1779968-1779987 None:intergenic 40.0%
!! CGAGTATAATGGATAGCCTT+AGG + Chr5:1779980-1779999 None:intergenic 40.0%
!! TGGTAGTTTGCTGAGAATGT+TGG - Chr5:1776953-1776972 MsG0580024193.01.T01:intron 40.0%
AAAGAAAGGAGGGACAAGTG+TGG + Chr5:1778655-1778674 None:intergenic 45.0%
AGACTGGTGCTTTCCTTCAT+AGG - Chr5:1779855-1779874 MsG0580024193.01.T01:intron 45.0%
CAGCCCTATTATGTCCTTCA+AGG + Chr5:1779934-1779953 None:intergenic 45.0%
CTATCCATTATACTCGGGGA+GGG - Chr5:1779984-1780003 MsG0580024193.01.T01:intron 45.0%
CTGTGGTCATCCTAAGAACA+AGG - Chr5:1779806-1779825 MsG0580024193.01.T01:intron 45.0%
GAACCCATGAAGGCTTCATT+TGG - Chr5:1777401-1777420 MsG0580024193.01.T01:CDS 45.0%
GAGAGTCATGTTAGTCCTCT+TGG - Chr5:1777791-1777810 MsG0580024193.01.T01:intron 45.0%
GATGCTGTGAATTCACAGAC+TGG - Chr5:1779839-1779858 MsG0580024193.01.T01:intron 45.0%
GGTCTTTATTGGCGTGAAAG+AGG - Chr5:1779528-1779547 MsG0580024193.01.T01:intron 45.0%
GTCCCTCCTTTCTTTCTTTC+TGG - Chr5:1778660-1778679 MsG0580024193.01.T01:intron 45.0%
GTCGCACTCATCTTATACGA+AGG + Chr5:1777097-1777116 None:intergenic 45.0%
GTCTGTGAATTCACAGCATC+AGG + Chr5:1779839-1779858 None:intergenic 45.0%
TCAAGGTTGGGCTATGTTTG+TGG - Chr5:1779611-1779630 MsG0580024193.01.T01:intron 45.0%
TGTCCATCGTTCAACTCAGT+CGG - Chr5:1776714-1776733 MsG0580024193.01.T01:CDS 45.0%
TTCTTCCAAGCCTCAAACCA+CGG + Chr5:1780010-1780029 None:intergenic 45.0%
! CAAGTGTGGTTGGACTTGTT+TGG + Chr5:1778641-1778660 None:intergenic 45.0%
! CATGTTTTCGACGATCGAGA+TGG - Chr5:1776815-1776834 MsG0580024193.01.T01:CDS 45.0%
!! TTATCAGTTGGTAGGGCAGT+AGG - Chr5:1777177-1777196 MsG0580024193.01.T01:CDS 45.0%
AAAGGAGGGACAAGTGTGGT+TGG + Chr5:1778651-1778670 None:intergenic 50.0%
ATTTCACCACCGACAGTGGA+GGG + Chr5:1778562-1778581 None:intergenic 50.0%
CGTCGTTTGTGACCATCATC+CGG + Chr5:1776755-1776774 None:intergenic 50.0%
GAAGAGAAAGAGAGAGAGGG+AGG + Chr5:1778602-1778621 None:intergenic 50.0%
GCTATCCATTATACTCGGGG+AGG - Chr5:1779983-1780002 MsG0580024193.01.T01:intron 50.0%
GTCCATCGTTCAACTCAGTC+GGG - Chr5:1776715-1776734 MsG0580024193.01.T01:CDS 50.0%
TCACAAACGACGACGACATG+AGG - Chr5:1776763-1776782 MsG0580024193.01.T01:CDS 50.0%
TTGGCGCAATGAACCCATGA+AGG - Chr5:1777391-1777410 MsG0580024193.01.T01:CDS 50.0%
ATTGACGCTCAGCCGGATGA+TGG - Chr5:1776740-1776759 MsG0580024193.01.T01:CDS 55.0%
CATTTCACCACCGACAGTGG+AGG + Chr5:1778563-1778582 None:intergenic 55.0%
GAGAGAGAGGGAGGATTGAG+CGG + Chr5:1778593-1778612 None:intergenic 55.0%
GCACATTTCACCACCGACAG+TGG + Chr5:1778566-1778585 None:intergenic 55.0%
! CTCCCGACTGAGTTGAACGA+TGG + Chr5:1776720-1776739 None:intergenic 55.0%
ACGGCCCTCCCCGAGTATAA+TGG + Chr5:1779991-1780010 None:intergenic 60.0%
ATTATACTCGGGGAGGGCCG+TGG - Chr5:1779990-1780009 MsG0580024193.01.T01:intron 60.0%
TCGGGAGATTGACGCTCAGC+CGG - Chr5:1776733-1776752 MsG0580024193.01.T01:CDS 60.0%
ACCCTCCCTCCCTCCACTGT+CGG - Chr5:1778550-1778569 MsG0580024193.01.T01:intron 65.0%
ACCGACAGTGGAGGGAGGGA+GGG + Chr5:1778554-1778573 None:intergenic 65.0%
CACCACCGACAGTGGAGGGA+GGG + Chr5:1778558-1778577 None:intergenic 65.0%
TCACCACCGACAGTGGAGGG+AGG + Chr5:1778559-1778578 None:intergenic 65.0%
! GAGGGCCGTGGTTTGAGGCT+TGG - Chr5:1780002-1780021 MsG0580024193.01.T01:intron 65.0%
CACCGACAGTGGAGGGAGGG+AGG + Chr5:1778555-1778574 None:intergenic 70.0%
CTCCCTCCCTCCACTGTCGG+TGG - Chr5:1778553-1778572 MsG0580024193.01.T01:intron 70.0%
TCGGGGAGGGCCGTGGTTTG+AGG - Chr5:1779997-1780016 MsG0580024193.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 1776713 1780108 1776713 ID=MsG0580024193.01;Name=MsG0580024193.01
Chr5 mRNA 1776713 1780108 1776713 ID=MsG0580024193.01.T01;Parent=MsG0580024193.01;Name=MsG0580024193.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.66|1|1|3|0|263
Chr5 exon 1780060 1780108 1780060 ID=MsG0580024193.01.T01:exon:505;Parent=MsG0580024193.01.T01
Chr5 exon 1777027 1777517 1777027 ID=MsG0580024193.01.T01:exon:504;Parent=MsG0580024193.01.T01
Chr5 exon 1776713 1776964 1776713 ID=MsG0580024193.01.T01:exon:503;Parent=MsG0580024193.01.T01
Chr5 CDS 1780060 1780108 1780060 ID=MsG0580024193.01.T01:cds;Parent=MsG0580024193.01.T01
Chr5 CDS 1777027 1777517 1777027 ID=MsG0580024193.01.T01:cds;Parent=MsG0580024193.01.T01
Chr5 CDS 1776713 1776964 1776713 ID=MsG0580024193.01.T01:cds;Parent=MsG0580024193.01.T01
Gene Sequence

>MsG0580024193.01.T01

ATGTCCATCGTTCAACTCAGTCGGGAGATTGACGCTCAGCCGGATGATGAGATGAGTTTGAGCAATGGTAAAAACCAATCACCATTACCAACTAGTAATGGTAATGGAATAGATTCTGCTGAGAATGAGAATGCAAAGAAACCCTTCAAGATCTTTGTGGGTTATGATCCACGTGAAGACATTGCATTTCAGGTATGTCGTCATTCAATCATGAAAAGGTCTTCAATTCCTGTTGAGATCATACCAATTAAGCAATCAGATCTGAGAAAAAGTGGTCTTTATTGGCGTGAAAGAGGTCAATTTGAGAGCACTGAGTTTTCTTTTACAAGATTCTTAACACCTAGTTTGGCAAATTATCAAGGTTGGGCTATGTTTGTGGATTGTGATTTTCTCTATTTAGCTGATATTAAGGAATTGGTAGATTTGATTGAGGATAAGTATGCTATTATGTGTGTTCAACATGATTATACTCCAAAAGAGACTACAAAGATGGATGGTGCTGTTCAAACTGTGTATCCTAGAAAGAATTGGTCTTCAATGACTGGTGCTTTCCTTCATAGGTTTCAATGGCTTGAGGATGATGAAATTGGTTCTGTACCTTTTGTTTGGAATTTCCTTGAAGGACATAATAGGGCTGTTGAGAATGATCCAACTACTTCACCTAAGGCTATCCATTATACTCGGGGAGGGCCGTGGTTTGAGGCTTGGAAGAATTGCGAATTTGCTGATCTATGGCTGAATGAGATGGAAGAGTACCTTGCTCAAGCCAAAAAAGAAAAATCTGATAATTAG
Protein sequence

>MsG0580024193.01.T01

MSIVQLSREIDAQPDDEMSLSNGKNQSPLPTSNGNGIDSAENENAKKPFKIFVGYDPREDIAFQVCRHSIMKRSSIPVEIIPIKQSDLRKSGLYWRERGQFESTEFSFTRFLTPSLANYQGWAMFVDCDFLYLADIKELVDLIEDKYAIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMTGAFLHRFQWLEDDEIGSVPFVWNFLEGHNRAVENDPTTSPKAIHYTRGGPWFEAWKNCEFADLWLNEMEEYLAQAKKEKSDN*