AlfalfaGEDB | MsG0580024193.01

M. sativa cultivar ZhongmuNo.1 / MsG0580024193.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024193.01.T01	XP_024640847.1	87.266	267	7	2	18	263	1	261	6.90E-169	477

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024193.01.T01	Q9XIP8	73.408	267	40	4	18	263	1	257	1.81E-142	403

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024193.01.T01	G7K529	87.266	267	7	2	18	263	1	261	3.29e-169	477

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080049045.01	MsG0580024193.01	0.803848	2.865324e-49	1.455215e-46
MsG0180003405.01	MsG0580024193.01	-0.800969	1.123251e-48	5.301324e-46
MsG0180004121.01	MsG0580024193.01	0.800972	1.121554e-48	5.293738e-46
MsG0180004714.01	MsG0580024193.01	-0.834187	3.463976e-56	4.079504e-53
MsG0180004792.01	MsG0580024193.01	-0.817838	2.678542e-52	1.972224e-49
MsG0280007406.01	MsG0580024193.01	-0.804767	1.844316e-49	9.590849e-47
MsG0280009675.01	MsG0580024193.01	-0.814379	1.587826e-51	1.063735e-48
MsG0380016156.01	MsG0580024193.01	0.807040	6.138169e-50	3.383650e-47
MsG0480019812.01	MsG0580024193.01	-0.813461	2.529309e-51	1.652911e-48
MsG0480020448.01	MsG0580024193.01	0.836138	1.115175e-56	1.392791e-53

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024193.01.T01	MTR_5g007050	87.266	267	7	2	18	263	1	261	8.35e-173	477
MsG0580024193.01.T01	MTR_6g046960	87.266	267	7	2	18	263	1	261	1.94e-172	476

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024193.01.T01	AT1G64980	71.898	274	46	4	11	263	14	277	6.36e-144	405
MsG0580024193.01.T01	AT1G64980	73.408	267	40	4	18	263	1	257	1.84e-143	403
MsG0580024193.01.T01	AT1G64980	73.408	267	40	4	18	263	1	257	1.84e-143	403

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Find 62 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCTTCAAGATCTTTGT+GGG	0.439682	5:-1777406	MsG0580024193.01.T01:CDS
AAAGAGACTACAAAGATGGA+TGG	0.623848	5:-1777070	MsG0580024193.01.T01:CDS
AAGATTCTTAACACCTAGTT+TGG	0.296665	5:-1777218	MsG0580024193.01.T01:CDS
AAGGCTATCCATTATACTCG+GGG	0.680190	5:-1776819	MsG0580024193.01.T01:CDS
ACAGAGATGAGTTTGAGCAA+TGG	0.659058	5:-1777499	MsG0580024193.01.T01:intron
ACGGCCCTCCCCGAGTATAA+TGG	0.377630	5:+1776811	None:intergenic
ACGTGAAGACATTGCATTTC+AGG	0.259904	5:-1777374	MsG0580024193.01.T01:CDS
AGACTGGTGCTTTCCTTCAT+AGG	0.356440	5:-1776944	MsG0580024193.01.T01:CDS
ATAACCCACAAAGATCTTGA+AGG	0.541294	5:+1777402	None:intergenic
ATAGCCTTAGGTGAAGTAGT+TGG	0.594477	5:+1776834	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATTCTTAACACCTAGTT+TGG	-	Chr5:1779581-1779600	MsG0580024193.01.T01:intron	30.0%
ATAAGAGTAAAACAATGGGT+AGG	-	Chr5:1778348-1778367	MsG0580024193.01.T01:intron	30.0%
ATACTGTATCGAGTAAATCT+AGG	+	Chr5:1778510-1778529	None:intergenic	30.0%
ATCGCATTATTACAACAACT+GGG	-	Chr5:1778781-1778800	MsG0580024193.01.T01:intron	30.0%
ATTCCATTACCATTACTAGT+TGG	+	Chr5:1779345-1779364	None:intergenic	30.0%
ATTGAAACTTATCAGTTGGT+AGG	-	Chr5:1777169-1777188	MsG0580024193.01.T01:CDS	30.0%
ATTGAAGACCAATTCTTTCT+AGG	+	Chr5:1779774-1779793	None:intergenic	30.0%
ATTTCCTTGAAGGACATAAT+AGG	-	Chr5:1779927-1779946	MsG0580024193.01.T01:intron	30.0%
CCAATTGAATGAAATGTGAA+AGG	+	Chr5:1778700-1778719	None:intergenic	30.0%
CCTTTCACATTTCATTCAAT+TGG	-	Chr5:1778697-1778716	MsG0580024193.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	1776713	1780108	1776713	ID=MsG0580024193.01;Name=MsG0580024193.01
Chr5	mRNA	1776713	1780108	1776713	ID=MsG0580024193.01.T01;Parent=MsG0580024193.01;Name=MsG0580024193.01.T01;_AED=0.34;_eAED=0.34;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|263
Chr5	exon	1780060	1780108	1780060	ID=MsG0580024193.01.T01:exon:505;Parent=MsG0580024193.01.T01
Chr5	exon	1777027	1777517	1777027	ID=MsG0580024193.01.T01:exon:504;Parent=MsG0580024193.01.T01
Chr5	exon	1776713	1776964	1776713	ID=MsG0580024193.01.T01:exon:503;Parent=MsG0580024193.01.T01
Chr5	CDS	1780060	1780108	1780060	ID=MsG0580024193.01.T01:cds;Parent=MsG0580024193.01.T01
Chr5	CDS	1777027	1777517	1777027	ID=MsG0580024193.01.T01:cds;Parent=MsG0580024193.01.T01
Chr5	CDS	1776713	1776964	1776713	ID=MsG0580024193.01.T01:cds;Parent=MsG0580024193.01.T01

Gene Sequence

>MsG0580024193.01.T01

ATGTCCATCGTTCAACTCAGTCGGGAGATTGACGCTCAGCCGGATGATGAGATGAGTTTGAGCAATGGTAAAAACCAATCACCATTACCAACTAGTAATGGTAATGGAATAGATTCTGCTGAGAATGAGAATGCAAAGAAACCCTTCAAGATCTTTGTGGGTTATGATCCACGTGAAGACATTGCATTTCAGGTATGTCGTCATTCAATCATGAAAAGGTCTTCAATTCCTGTTGAGATCATACCAATTAAGCAATCAGATCTGAGAAAAAGTGGTCTTTATTGGCGTGAAAGAGGTCAATTTGAGAGCACTGAGTTTTCTTTTACAAGATTCTTAACACCTAGTTTGGCAAATTATCAAGGTTGGGCTATGTTTGTGGATTGTGATTTTCTCTATTTAGCTGATATTAAGGAATTGGTAGATTTGATTGAGGATAAGTATGCTATTATGTGTGTTCAACATGATTATACTCCAAAAGAGACTACAAAGATGGATGGTGCTGTTCAAACTGTGTATCCTAGAAAGAATTGGTCTTCAATGACTGGTGCTTTCCTTCATAGGTTTCAATGGCTTGAGGATGATGAAATTGGTTCTGTACCTTTTGTTTGGAATTTCCTTGAAGGACATAATAGGGCTGTTGAGAATGATCCAACTACTTCACCTAAGGCTATCCATTATACTCGGGGAGGGCCGTGGTTTGAGGCTTGGAAGAATTGCGAATTTGCTGATCTATGGCTGAATGAGATGGAAGAGTACCTTGCTCAAGCCAAAAAAGAAAAATCTGATAATTAG

Protein sequence

>MsG0580024193.01.T01

MSIVQLSREIDAQPDDEMSLSNGKNQSPLPTSNGNGIDSAENENAKKPFKIFVGYDPREDIAFQVCRHSIMKRSSIPVEIIPIKQSDLRKSGLYWRERGQFESTEFSFTRFLTPSLANYQGWAMFVDCDFLYLADIKELVDLIEDKYAIMCVQHDYTPKETTKMDGAVQTVYPRKNWSSMTGAFLHRFQWLEDDEIGSVPFVWNFLEGHNRAVENDPTTSPKAIHYTRGGPWFEAWKNCEFADLWLNEMEEYLAQAKKEKSDN*