AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036178.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036178.01.T01 MTR_7g009370 93.750 176 11 0 1 176 1 176 6.20e-115 335
MsG0780036178.01.T01 MTR_7g009370 90.196 102 10 0 176 277 256 357 6.80e-55 181
MsG0780036178.01.T01 MTR_6g011400 72.067 179 46 2 1 175 1 179 6.78e-86 261
MsG0780036178.01.T01 MTR_6g011400 71.569 102 29 0 176 277 260 361 8.28e-44 152
MsG0780036178.01.T01 MTR_8g107360 54.651 172 77 1 1 171 1 172 6.12e-58 193
MsG0780036178.01.T01 MTR_8g107360 68.132 91 29 0 187 277 434 524 1.58e-33 128
MsG0780036178.01.T01 MTR_6g069510 58.025 162 68 0 1 162 1 162 1.16e-57 194
MsG0780036178.01.T01 MTR_6g069510 64.835 91 32 0 187 277 514 604 5.91e-32 124
MsG0780036178.01.T01 MTR_7g089360 58.228 158 66 0 1 158 1 158 2.01e-57 193
MsG0780036178.01.T01 MTR_7g089360 63.736 91 33 0 187 277 501 591 8.20e-31 121
MsG0780036178.01.T01 MTR_7g089360 58.228 158 66 0 1 158 1 158 2.13e-57 193
MsG0780036178.01.T01 MTR_7g089360 65.714 70 24 0 187 256 501 570 2.16e-22 97.1
MsG0780036178.01.T01 MTR_1g030890 56.329 158 69 0 1 158 1 158 1.27e-54 184
MsG0780036178.01.T01 MTR_1g030890 56.329 158 69 0 1 158 1 158 3.53e-54 185
MsG0780036178.01.T01 MTR_1g030890 68.132 91 29 0 187 277 531 621 3.24e-32 125
MsG0780036178.01.T01 MTR_4g084870 55.063 158 71 0 1 158 1 158 1.66e-52 181
MsG0780036178.01.T01 MTR_4g084870 64.835 91 32 0 187 277 569 659 2.40e-31 122
MsG0780036178.01.T01 MTR_4g127100 55.280 161 67 2 1 158 1 159 3.23e-50 173
MsG0780036178.01.T01 MTR_4g127090 54.545 165 70 2 1 162 1 163 3.89e-50 174
MsG0780036178.01.T01 MTR_4g127090 54.945 91 41 0 187 277 477 567 2.75e-25 105
MsG0780036178.01.T01 MTR_4g127100 55.280 161 67 2 1 158 1 159 7.34e-50 174
MsG0780036178.01.T01 MTR_4g127100 59.341 91 37 0 187 277 535 625 4.45e-29 116
MsG0780036178.01.T01 MTR_1g029190 53.797 158 73 0 1 158 1 158 2.23e-48 168
MsG0780036178.01.T01 MTR_1g029190 49.020 102 52 0 176 277 426 527 2.39e-27 110
MsG0780036178.01.T01 MTR_2g038470 49.367 158 80 0 1 158 1 158 2.01e-44 157
MsG0780036178.01.T01 MTR_2g038470 56.044 91 40 0 187 277 419 509 6.41e-26 106
MsG0780036178.01.T01 MTR_7g079720 44.156 154 86 0 1 154 1 154 6.67e-37 134
MsG0780036178.01.T01 MTR_7g079720 43.158 95 54 0 181 275 265 359 5.02e-24 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036178.01.T01 AT5G15100 53.005 183 81 2 1 178 1 183 9.00e-60 194
MsG0780036178.01.T01 AT5G15100 57.843 102 43 0 176 277 266 367 2.48e-32 122
MsG0780036178.01.T01 AT1G73590 58.025 162 68 0 1 162 1 162 2.88e-56 191
MsG0780036178.01.T01 AT1G73590 58.824 102 42 0 176 277 521 622 4.24e-29 116
MsG0780036178.01.T01 AT1G23080 56.962 158 68 0 1 158 1 158 1.33e-53 182
MsG0780036178.01.T01 AT1G23080 56.962 158 68 0 1 158 1 158 3.55e-53 182
MsG0780036178.01.T01 AT1G23080 62.637 91 34 0 187 277 525 615 2.36e-27 111
MsG0780036178.01.T01 AT1G23080 56.962 158 68 0 1 158 1 158 3.55e-53 182
MsG0780036178.01.T01 AT1G23080 62.637 91 34 0 187 277 525 615 2.36e-27 111
MsG0780036178.01.T01 AT1G23080 56.962 158 68 0 1 158 1 158 3.64e-53 182
MsG0780036178.01.T01 AT1G23080 62.637 91 34 0 187 277 529 619 2.25e-27 111
MsG0780036178.01.T01 AT1G70940 56.962 158 68 0 1 158 1 158 4.99e-53 182
MsG0780036178.01.T01 AT1G70940 64.835 91 32 0 187 277 550 640 1.02e-26 109
MsG0780036178.01.T01 AT2G01420 55.696 158 70 0 1 158 1 158 5.36e-53 180
MsG0780036178.01.T01 AT2G01420 55.696 158 70 0 1 158 1 158 1.26e-52 181
MsG0780036178.01.T01 AT2G01420 62.637 91 34 0 187 277 526 616 1.53e-30 120
MsG0780036178.01.T01 AT2G01420 55.696 158 70 0 1 158 1 158 1.39e-52 181
MsG0780036178.01.T01 AT2G01420 62.637 91 34 0 187 277 522 612 1.49e-30 120
MsG0780036178.01.T01 AT5G57090 55.556 162 72 0 1 162 1 162 2.10e-52 181
MsG0780036178.01.T01 AT5G57090 62.637 91 34 0 187 277 557 647 1.64e-29 117
MsG0780036178.01.T01 AT1G77110 50.581 172 84 1 1 171 1 172 5.02e-48 167
MsG0780036178.01.T01 AT1G77110 46.250 80 43 0 176 255 469 548 4.72e-18 84.3
MsG0780036178.01.T01 AT1G77110 50.581 172 84 1 1 171 1 172 5.52e-48 168
MsG0780036178.01.T01 AT1G77110 45.098 102 56 0 176 277 469 570 1.62e-24 103
MsG0780036178.01.T01 AT5G16530 43.312 157 89 0 1 157 1 157 2.78e-39 140
MsG0780036178.01.T01 AT5G16530 48.684 76 39 0 181 256 253 328 2.89e-17 80.9
MsG0780036178.01.T01 AT5G16530 39.594 197 105 3 1 197 1 183 3.68e-39 140
MsG0780036178.01.T01 AT5G16530 48.913 92 47 0 181 272 253 344 8.89e-24 99.0
MsG0780036178.01.T01 AT5G57090 62.637 91 34 0 187 277 457 547 9.58e-30 117
MsG0780036178.01.T01 AT5G57090 64.516 62 22 0 101 162 1 62 3.26e-17 81.6

Find 47 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTAATACTTTGATTCT+TGG 0.167604 7:-4343012 MsG0780036178.01.T01:CDS
AGTATCATTGTTACATATAA+TGG 0.218778 7:+4343294 None:intergenic
AATCAGCATACATGAGTTTA+AGG 0.223359 7:+4343136 None:intergenic
CATTGCCTTGCCAGTGGAAT+TGG 0.236586 7:-4340450 MsG0780036178.01.T01:CDS
ATTCCAAGAATCAAAGTATT+AGG 0.293610 7:+4343009 None:intergenic
CTTGTTAATAGGATCTTGTT+AGG 0.307687 7:-4340479 MsG0780036178.01.T01:intron
CGTTTGAAATGGATTATAAC+TGG 0.325563 7:-4343051 MsG0780036178.01.T01:CDS
ACTGCAATTATTAAGATTAG+TGG 0.327487 7:-4343081 MsG0780036178.01.T01:CDS
GTTTAAAGTTGCAATAGTTC+AGG 0.371056 7:-4341364 MsG0780036178.01.T01:intron
ACTTCCTCTTAGCACTTTGA+AGG 0.375893 7:-4340421 None:intergenic
GTGGTAAAGGTCGTTTGAAA+TGG 0.378352 7:-4343062 MsG0780036178.01.T01:CDS
ATTGTTAAAAGCAATGTATA+AGG 0.393383 7:-4342983 MsG0780036178.01.T01:CDS
AGGACCTGCTCTAATGGCTT+TGG 0.407779 7:-4341418 MsG0780036178.01.T01:CDS
GTATCATTGTTACATATAAT+GGG 0.421983 7:+4343295 None:intergenic
GCTTTGGCATCCATTGTCAT+TGG 0.422465 7:-4341402 MsG0780036178.01.T01:CDS
GTTGGTAGGACCTGCTCTAA+TGG 0.425327 7:-4341424 MsG0780036178.01.T01:CDS
GAACCATTTCACTGAGACAT+AGG 0.430638 7:+4343269 None:intergenic
TTCACACAAGAACAATGTTC+AGG 0.435017 7:-4343240 MsG0780036178.01.T01:CDS
ATTGCAACCATTGTATTCCT+TGG 0.437294 7:+4341459 None:intergenic
AGGAATACAATGGTTGCAAT+TGG 0.442619 7:-4341456 MsG0780036178.01.T01:CDS
TTTGTACCTGTGTCTTGTGA+TGG 0.450346 7:+4342847 None:intergenic
TAGCCTATGTCTCAGTGAAA+TGG 0.450425 7:-4343272 MsG0780036178.01.T01:CDS
AGGTGCAGATAGCATGTTCT+TGG 0.455822 7:+4342870 None:intergenic
TACTTACGCAGTGCTTAAGA+TGG 0.479644 7:+4340577 None:intergenic
ATGACTTGAAATGATAAAAG+AGG 0.503088 7:+4343186 None:intergenic
ATTATTAAGATTAGTGGTAA+AGG 0.505908 7:-4343075 MsG0780036178.01.T01:CDS
CAACCCTTCAAAGTGCTAAG+AGG 0.511277 7:+4340417 None:intergenic
TACATGATAAACATTGGCTA+AGG 0.518936 7:+4343332 None:intergenic
TGTTATTACATGATAAACAT+TGG 0.540122 7:+4343326 None:intergenic
TGACTTGAAATGATAAAAGA+GGG 0.540501 7:+4343187 None:intergenic
TACGCAGTGCTTAAGATGGA+TGG 0.549725 7:+4340581 None:intergenic
GTACCTGTGTCTTGTGATGG+AGG 0.560547 7:+4342850 None:intergenic
GCATCATAGCATGTGGGCCA+AGG 0.564036 7:-4341476 MsG0780036178.01.T01:CDS
GAAAGCCAATTCCACTGGCA+AGG 0.580315 7:+4340445 None:intergenic
AAGTAGAAAGCCAATTCCAC+TGG 0.581046 7:+4340440 None:intergenic
GATGCCAAAGCCATTAGAGC+AGG 0.586131 7:+4341414 None:intergenic
CAGTCAAGCATCATAGCATG+TGG 0.594053 7:-4341483 MsG0780036178.01.T01:CDS
AATGCTCATTGCCTTGCCAG+TGG 0.628295 7:-4340456 MsG0780036178.01.T01:CDS
GTTTCTTAAACCAATGACAA+TGG 0.631743 7:+4341392 None:intergenic
CAGTGCTTAAGATGGATGGA+TGG 0.644221 7:+4340585 None:intergenic
TGCAATTGGACTGAAAGTGT+TGG 0.649176 7:-4341442 MsG0780036178.01.T01:CDS
ATGTGGGCCAAGGAATACAA+TGG 0.670600 7:-4341466 MsG0780036178.01.T01:CDS
TGGCAGGCAGCTCTACCACA+AGG 0.672085 7:-4340644 MsG0780036178.01.T01:intron
AGTCAAGCATCATAGCATGT+GGG 0.689134 7:-4341482 MsG0780036178.01.T01:CDS
GCACCTCCATCACAAGACAC+AGG 0.697743 7:-4342853 MsG0780036178.01.T01:CDS
ATTGGACTGAAAGTGTTGGT+AGG 0.716420 7:-4341438 MsG0780036178.01.T01:CDS
ACAAAAGGAACAATTCCTTG+TGG 0.718693 7:+4340629 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATCATGTATTAATATTT+AGG + Chr7:4343093-4343112 None:intergenic 10.0%
!! ATATCATGTATTAATATTTA+GGG + Chr7:4343092-4343111 None:intergenic 10.0%
!!! ATTGTTATTTTTCAATTTAA+AGG + Chr7:4342586-4342605 None:intergenic 10.0%
!!! TATTTTCATAATTTATAACA+AGG + Chr7:4342099-4342118 None:intergenic 10.0%
!!! TTTTTATTTCACAAATTTAA+AGG - Chr7:4342622-4342641 MsG0780036178.01.T01:intron 10.0%
!! AGAAATAGATTATAGTAATT+TGG + Chr7:4342861-4342880 None:intergenic 15.0%
!! ATTTAAAAGATATACAATGT+GGG - Chr7:4342122-4342141 MsG0780036178.01.T01:intron 15.0%
!! CTATACTTATATATATAACA+TGG - Chr7:4343008-4343027 MsG0780036178.01.T01:CDS 15.0%
!! GAAAAATAACAATCAATTTA+GGG - Chr7:4342593-4342612 MsG0780036178.01.T01:intron 15.0%
!! TAAAACAAAAATGAAAGAAA+TGG - Chr7:4342898-4342917 MsG0780036178.01.T01:CDS 15.0%
!! TAGAAACTAAATATTATACA+TGG - Chr7:4342481-4342500 MsG0780036178.01.T01:intron 15.0%
!! TGAAAAATAACAATCAATTT+AGG - Chr7:4342592-4342611 MsG0780036178.01.T01:intron 15.0%
!!! GATCAATAATTTTTTAGTAA+AGG + Chr7:4342780-4342799 None:intergenic 15.0%
!!! TTTTCACTTTTTTTTATCAA+TGG - Chr7:4341167-4341186 MsG0780036178.01.T01:intron 15.0%
!! AAAACACAAACAAAAAATAC+AGG + Chr7:4341068-4341087 None:intergenic 20.0%
!! AATCTATCATTACAATTTCA+AGG + Chr7:4342526-4342545 None:intergenic 20.0%
!! AGTATCATTGTTACATATAA+TGG + Chr7:4340472-4340491 None:intergenic 20.0%
!! ATCTTATCTTACAATGTATA+AGG - Chr7:4340961-4340980 MsG0780036178.01.T01:intron 20.0%
!! ATTATTAAGATTAGTGGTAA+AGG - Chr7:4340688-4340707 MsG0780036178.01.T01:intron 20.0%
!! ATTGTTAAAAGCAATGTATA+AGG - Chr7:4340780-4340799 MsG0780036178.01.T01:intron 20.0%
!! CACTATTAAAATATATGTTC+TGG + Chr7:4341314-4341333 None:intergenic 20.0%
!! CTTGTATAGTGTATAAAAAA+AGG + Chr7:4341758-4341777 None:intergenic 20.0%
!! GATTTAAAAGATATACAATG+TGG - Chr7:4342121-4342140 MsG0780036178.01.T01:intron 20.0%
!! GTATCATTGTTACATATAAT+GGG + Chr7:4340471-4340490 None:intergenic 20.0%
!! TATAACAAGGAAGAAAAATA+TGG + Chr7:4342086-4342105 None:intergenic 20.0%
!! TATATAATTTCCTTATCACA+AGG - Chr7:4341905-4341924 MsG0780036178.01.T01:intron 20.0%
!! TATTCTTTAGCAAAAACAAA+AGG + Chr7:4343152-4343171 None:intergenic 20.0%
!! TGTTATTACATGATAAACAT+TGG + Chr7:4340440-4340459 None:intergenic 20.0%
!!! AACATATATTTTAATAGTGG+TGG - Chr7:4341315-4341334 MsG0780036178.01.T01:intron 20.0%
!!! AAGGATTTTGATTAGTAAAA+AGG - Chr7:4340980-4340999 MsG0780036178.01.T01:intron 20.0%
!!! CAGAACATATATTTTAATAG+TGG - Chr7:4341312-4341331 MsG0780036178.01.T01:intron 20.0%
!!! CTTATCATAGTTTTAAATTG+TGG - Chr7:4341365-4341384 MsG0780036178.01.T01:CDS 20.0%
!!! TGTTTTTGTTTCTTGTTAAT+AGG - Chr7:4343273-4343292 MsG0780036178.01.T01:CDS 20.0%
!!! TTATACATTGCTTTTAACAA+TGG + Chr7:4340781-4340800 None:intergenic 20.0%
! AACACATTTGCTTCATTAAT+AGG - Chr7:4341664-4341683 MsG0780036178.01.T01:intron 25.0%
! ACATGTTTCAACTTAGTATT+TGG + Chr7:4341140-4341159 None:intergenic 25.0%
! ACTGCAATTATTAAGATTAG+TGG - Chr7:4340682-4340701 MsG0780036178.01.T01:intron 25.0%
! AGTACTATAAACAATCAATG+TGG - Chr7:4341286-4341305 MsG0780036178.01.T01:intron 25.0%
! ATCATCATGTTAGAAATTGT+TGG + Chr7:4343050-4343069 None:intergenic 25.0%
! ATGACTTGAAATGATAAAAG+AGG + Chr7:4340580-4340599 None:intergenic 25.0%
! ATTAATGAAGCAAATGTGTT+TGG + Chr7:4341664-4341683 None:intergenic 25.0%
! ATTGAATGATTGATTACTTC+AGG + Chr7:4341995-4342014 None:intergenic 25.0%
! ATTGTTGGATTAAGATCAAA+TGG + Chr7:4343035-4343054 None:intergenic 25.0%
! GTACTATAAACAATCAATGT+GGG - Chr7:4341287-4341306 MsG0780036178.01.T01:intron 25.0%
! TAAGGCTATAAATAACAACT+AGG - Chr7:4341938-4341957 MsG0780036178.01.T01:intron 25.0%
! TAATACATGATATTTGCATG+TGG - Chr7:4343099-4343118 MsG0780036178.01.T01:CDS 25.0%
! TAATTTATCAGGTCTGTTTA+TGG - Chr7:4342252-4342271 MsG0780036178.01.T01:intron 25.0%
! TGACTTGAAATGATAAAAGA+GGG + Chr7:4340579-4340598 None:intergenic 25.0%
!! AACTAGGTATACATATTTTC+AGG - Chr7:4341954-4341973 MsG0780036178.01.T01:intron 25.0%
!! ATTCCAAGAATCAAAGTATT+AGG + Chr7:4340757-4340776 None:intergenic 25.0%
!! GATCAACTTTTACAATTTCA+GGG - Chr7:4342653-4342672 MsG0780036178.01.T01:intron 25.0%
!! TCTTTTTGTGTGTTTATTGA+TGG - Chr7:4342225-4342244 MsG0780036178.01.T01:intron 25.0%
!! TGATCAACTTTTACAATTTC+AGG - Chr7:4342652-4342671 MsG0780036178.01.T01:intron 25.0%
!! TTGATGGATGTTAATTTATC+AGG - Chr7:4342241-4342260 MsG0780036178.01.T01:intron 25.0%
!!! ATATTTTAATAGTGGTGGAA+AGG - Chr7:4341320-4341339 MsG0780036178.01.T01:intron 25.0%
!!! ATTTTTAGAGTTGCAGTAAA+AGG - Chr7:4342202-4342221 MsG0780036178.01.T01:intron 25.0%
!!! TATTTTAATAGTGGTGGAAA+GGG - Chr7:4341321-4341340 MsG0780036178.01.T01:intron 25.0%
!!! TTGCTGTTTCTCAAATTTAA+AGG + Chr7:4342557-4342576 None:intergenic 25.0%
AAATACAGGAGACTTGATTA+CGG + Chr7:4341054-4341073 None:intergenic 30.0%
AATCAGCATACATGAGTTTA+AGG + Chr7:4340630-4340649 None:intergenic 30.0%
ACTTAGTATTTGGTATTCCT+CGG + Chr7:4341130-4341149 None:intergenic 30.0%
AGTTCCTAATGTTTACTTGA+AGG - Chr7:4341514-4341533 MsG0780036178.01.T01:intron 30.0%
ATCAAACTTTACTTACCTTC+CGG - Chr7:4342828-4342847 MsG0780036178.01.T01:CDS 30.0%
ATCTCTCACAAATATCTAGA+TGG + Chr7:4341796-4341815 None:intergenic 30.0%
ATTATGATCTCCTTGTGATA+AGG + Chr7:4341918-4341937 None:intergenic 30.0%
ATTTACTCTTTACGAATGGT+TGG - Chr7:4342688-4342707 MsG0780036178.01.T01:intron 30.0%
CTTCATTAATAGGCATCATT+TGG - Chr7:4341674-4341693 MsG0780036178.01.T01:intron 30.0%
CTTCCTAATACTTTGATTCT+TGG - Chr7:4340751-4340770 MsG0780036178.01.T01:intron 30.0%
CTTGTTAATAGGATCTTGTT+AGG - Chr7:4343284-4343303 MsG0780036178.01.T01:CDS 30.0%
GTGTATTTACTCTTTACGAA+TGG - Chr7:4342684-4342703 MsG0780036178.01.T01:intron 30.0%
GTTTCTTAAACCAATGACAA+TGG + Chr7:4342374-4342393 None:intergenic 30.0%
TCAATAGAACTATTGTCCAA+TGG - Chr7:4342010-4342029 MsG0780036178.01.T01:intron 30.0%
TCACAAGGAGATCATAATTA+AGG - Chr7:4341920-4341939 MsG0780036178.01.T01:intron 30.0%
TCCAATCAATTCGACTTTAA+CGG + Chr7:4342741-4342760 None:intergenic 30.0%
! ATAGTAATTTGGAGTTCAAC+CGG + Chr7:4342850-4342869 None:intergenic 30.0%
! GCTCATTTTGTAGATATTGT+TGG + Chr7:4340608-4340627 None:intergenic 30.0%
! GTTTAAAGTTGCAATAGTTC+AGG - Chr7:4342399-4342418 MsG0780036178.01.T01:intron 30.0%
! TACATGATAAACATTGGCTA+AGG + Chr7:4340434-4340453 None:intergenic 30.0%
! TTATCAATGGCATTTGAGAT+TGG - Chr7:4341180-4341199 MsG0780036178.01.T01:intron 30.0%
! TTTTCTTGCAGAGTATGATT+TGG - Chr7:4340833-4340852 MsG0780036178.01.T01:intron 30.0%
!! ATGGTTCTAAATTGCATTTG+TGG + Chr7:4341481-4341500 None:intergenic 30.0%
!! CGTTTGAAATGGATTATAAC+TGG - Chr7:4340712-4340731 MsG0780036178.01.T01:intron 30.0%
!! TAGGTATACATATTTTCAGG+TGG - Chr7:4341957-4341976 MsG0780036178.01.T01:intron 30.0%
!!! AGGTATACATATTTTCAGGT+GGG - Chr7:4341958-4341977 MsG0780036178.01.T01:intron 30.0%
!!! ATTTTGCTTTTTGTTCCAAC+AGG + Chr7:4341592-4341611 None:intergenic 30.0%
AATGGTTGGACTCAAGTATT+TGG - Chr7:4342702-4342721 MsG0780036178.01.T01:intron 35.0%
ACAAAAGGAACAATTCCTTG+TGG + Chr7:4343137-4343156 None:intergenic 35.0%
AGGAATACAATGGTTGCAAT+TGG - Chr7:4342307-4342326 MsG0780036178.01.T01:intron 35.0%
ATAGAACTATTGTCCAATGG+AGG - Chr7:4342013-4342032 MsG0780036178.01.T01:intron 35.0%
ATGGTTGGACTCAAGTATTT+GGG - Chr7:4342703-4342722 MsG0780036178.01.T01:intron 35.0%
ATGTTTACTTGAAGGAGAGT+CGG - Chr7:4341522-4341541 MsG0780036178.01.T01:intron 35.0%
ATTGCAACCATTGTATTCCT+TGG + Chr7:4342307-4342326 None:intergenic 35.0%
CAATTGCGCTTGCAATATAA+AGG - Chr7:4341398-4341417 MsG0780036178.01.T01:CDS 35.0%
CTCTCCTTCAAGTAAACATT+AGG + Chr7:4341521-4341540 None:intergenic 35.0%
TACTTTCGAACCAAAGTGTA+TGG - Chr7:4341099-4341118 MsG0780036178.01.T01:intron 35.0%
TCCGTTAAAGTCGAATTGAT+TGG - Chr7:4342737-4342756 MsG0780036178.01.T01:intron 35.0%
TCTAGATGGTGAGATCTAAT+TGG + Chr7:4341782-4341801 None:intergenic 35.0%
TTATATTGCAAGCGCAATTG+CGG + Chr7:4341398-4341417 None:intergenic 35.0%
TTCACACAAGAACAATGTTC+AGG - Chr7:4340523-4340542 MsG0780036178.01.T01:intron 35.0%
TTTGGTCAAGCATACAATTC+AGG - Chr7:4341692-4341711 MsG0780036178.01.T01:intron 35.0%
! ATGGCATTTGAGATTGGATA+TGG - Chr7:4341186-4341205 MsG0780036178.01.T01:intron 35.0%
!!! GGTATACATATTTTCAGGTG+GGG - Chr7:4341959-4341978 MsG0780036178.01.T01:intron 35.0%
!!! GTATACATATTTTCAGGTGG+GGG - Chr7:4341960-4341979 MsG0780036178.01.T01:intron 35.0%
AAGTAGAAAGCCAATTCCAC+TGG + Chr7:4343326-4343345 None:intergenic 40.0%
ACATGATATTTGCATGTGGC+AGG - Chr7:4343103-4343122 MsG0780036178.01.T01:CDS 40.0%
ACCAATGCTATCGTGTGTAA+AGG + Chr7:4341731-4341750 None:intergenic 40.0%
AGTCAAGCATCATAGCATGT+GGG - Chr7:4342281-4342300 MsG0780036178.01.T01:intron 40.0%
GAACCATTTCACTGAGACAT+AGG + Chr7:4340497-4340516 None:intergenic 40.0%
GAAGAAGATGAAGAACCTGT+TGG - Chr7:4341574-4341593 MsG0780036178.01.T01:intron 40.0%
GCTGGATAAGTAGGCATAAT+TGG - Chr7:4341021-4341040 MsG0780036178.01.T01:intron 40.0%
GGAACTGAATGTAAGAAGCA+TGG + Chr7:4341500-4341519 None:intergenic 40.0%
GTGGTAAAGGTCGTTTGAAA+TGG - Chr7:4340701-4340720 MsG0780036178.01.T01:intron 40.0%
TACTTACGCAGTGCTTAAGA+TGG + Chr7:4343189-4343208 None:intergenic 40.0%
TAGCCTATGTCTCAGTGAAA+TGG - Chr7:4340491-4340510 MsG0780036178.01.T01:intron 40.0%
TTTCCCATTCTTGTCACAGT+GGG - Chr7:4341619-4341638 MsG0780036178.01.T01:intron 40.0%
TTTGTACCTGTGTCTTGTGA+TGG + Chr7:4340919-4340938 None:intergenic 40.0%
! AATAGTGGTGGAAAGGGAAA+TGG - Chr7:4341327-4341346 MsG0780036178.01.T01:intron 40.0%
! TAATTTGGAGTTCAACCGGA+AGG + Chr7:4342846-4342865 None:intergenic 40.0%
! TGCAATTGGACTGAAAGTGT+TGG - Chr7:4342321-4342340 MsG0780036178.01.T01:intron 40.0%
!! ATTGGACTGAAAGTGTTGGT+AGG - Chr7:4342325-4342344 MsG0780036178.01.T01:intron 40.0%
AGGTGCAGATAGCATGTTCT+TGG + Chr7:4340896-4340915 None:intergenic 45.0%
ATGTGGGCCAAGGAATACAA+TGG - Chr7:4342297-4342316 MsG0780036178.01.T01:intron 45.0%
CAAAGTGTATGGTCTATCCG+AGG - Chr7:4341110-4341129 MsG0780036178.01.T01:intron 45.0%
CAGTCAAGCATCATAGCATG+TGG - Chr7:4342280-4342299 MsG0780036178.01.T01:intron 45.0%
CAGTGCTTAAGATGGATGGA+TGG + Chr7:4343181-4343200 None:intergenic 45.0%
CTACTTATCCAGCAGTAGAG+CGG + Chr7:4341014-4341033 None:intergenic 45.0%
CTATTGTCCAATGGAGGTCT+TGG - Chr7:4342019-4342038 MsG0780036178.01.T01:intron 45.0%
CTCGGATAGACCATACACTT+TGG + Chr7:4341112-4341131 None:intergenic 45.0%
CTTTCCCATTCTTGTCACAG+TGG - Chr7:4341618-4341637 MsG0780036178.01.T01:intron 45.0%
GCCTTTACACACGATAGCAT+TGG - Chr7:4341727-4341746 MsG0780036178.01.T01:intron 45.0%
GCTTTGGCATCCATTGTCAT+TGG - Chr7:4342361-4342380 MsG0780036178.01.T01:intron 45.0%
GGAGACTTGATTACGGAGTT+CGG + Chr7:4341047-4341066 None:intergenic 45.0%
GGTATGGCAATGTTCAGCTT+AGG - Chr7:4342040-4342059 MsG0780036178.01.T01:intron 45.0%
GTGTGTTGTGACTGCAATTG+TGG - Chr7:4341435-4341454 MsG0780036178.01.T01:CDS 45.0%
TACGCAGTGCTTAAGATGGA+TGG + Chr7:4343185-4343204 None:intergenic 45.0%
TTCCCATTCTTGTCACAGTG+GGG - Chr7:4341620-4341639 MsG0780036178.01.T01:intron 45.0%
TTCCCCACTGTGACAAGAAT+GGG + Chr7:4341625-4341644 None:intergenic 45.0%
AATGCTCATTGCCTTGCCAG+TGG - Chr7:4343307-4343326 MsG0780036178.01.T01:CDS 50.0%
AGGACCTGCTCTAATGGCTT+TGG - Chr7:4342345-4342364 MsG0780036178.01.T01:intron 50.0%
CATTGCCTTGCCAGTGGAAT+TGG - Chr7:4343313-4343332 MsG0780036178.01.T01:CDS 50.0%
CGCTCTACTGCTGGATAAGT+AGG - Chr7:4341012-4341031 MsG0780036178.01.T01:intron 50.0%
CTTCCCCACTGTGACAAGAA+TGG + Chr7:4341626-4341645 None:intergenic 50.0%
GAAAGCCAATTCCACTGGCA+AGG + Chr7:4343321-4343340 None:intergenic 50.0%
GATGCCAAAGCCATTAGAGC+AGG + Chr7:4342352-4342371 None:intergenic 50.0%
GTACCTGTGTCTTGTGATGG+AGG + Chr7:4340916-4340935 None:intergenic 50.0%
GTCCAATGGAGGTCTTGGTA+TGG - Chr7:4342024-4342043 MsG0780036178.01.T01:intron 50.0%
TATTGCATCCGCTCTACTGC+TGG - Chr7:4341003-4341022 MsG0780036178.01.T01:intron 50.0%
TGCCATACCAAGACCTCCAT+TGG + Chr7:4342029-4342048 None:intergenic 50.0%
! GTTGGTAGGACCTGCTCTAA+TGG - Chr7:4342339-4342358 MsG0780036178.01.T01:intron 50.0%
GCACCTCCATCACAAGACAC+AGG - Chr7:4340910-4340929 MsG0780036178.01.T01:intron 55.0%
GCATCATAGCATGTGGGCCA+AGG - Chr7:4342287-4342306 MsG0780036178.01.T01:intron 55.0%
TGGCAGGCAGCTCTACCACA+AGG - Chr7:4343119-4343138 MsG0780036178.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 4340424 4343361 4340424 ID=MsG0780036178.01;Name=MsG0780036178.01
Chr7 mRNA 4340424 4343361 4340424 ID=MsG0780036178.01.T01;Parent=MsG0780036178.01;Name=MsG0780036178.01.T01;_AED=0.23;_eAED=0.23;_QI=0|0|0|1|0.33|0.25|4|0|277
Chr7 exon 4342810 4343361 4342810 ID=MsG0780036178.01.T01:exon:2465;Parent=MsG0780036178.01.T01
Chr7 exon 4341365 4341502 4341365 ID=MsG0780036178.01.T01:exon:2464;Parent=MsG0780036178.01.T01
Chr7 exon 4340584 4340660 4340584 ID=MsG0780036178.01.T01:exon:2463;Parent=MsG0780036178.01.T01
Chr7 exon 4340424 4340490 4340424 ID=MsG0780036178.01.T01:exon:2462;Parent=MsG0780036178.01.T01
Chr7 CDS 4342810 4343361 4342810 ID=MsG0780036178.01.T01:cds;Parent=MsG0780036178.01.T01
Chr7 CDS 4341365 4341502 4341365 ID=MsG0780036178.01.T01:cds;Parent=MsG0780036178.01.T01
Chr7 CDS 4340584 4340660 4340584 ID=MsG0780036178.01.T01:cds;Parent=MsG0780036178.01.T01
Chr7 CDS 4340424 4340490 4340424 ID=MsG0780036178.01.T01:cds;Parent=MsG0780036178.01.T01
Gene Sequence

>MsG0780036178.01.T01

ATGATTTCCTTAGCCAATGTTTATCATGTAATAACAACAACTGTCCCATTATATGTAACAATGATACTAGCCTATGTCTCAGTGAAATGGTTCAAGATCTTCACACAAGAACAATGTTCAGGAATAAACAAATTTGTTGCAAAATTCTCAATCCCTCTTTTATCATTTCAAGTCATTTCTTCCAACAATATCTACAAAATGAGCCTTAAACTCATGTATGCTGATTTCATTCAGAAACTTCTTGCATTTGTTCTCTTAACTGCAATTATTAAGATTAGTGGTAAAGGTCGTTTGAAATGGATTATAACTGGTTTTTCATTATCAACACTTCCTAATACTTTGATTCTTGGAATTCCATTGTTAAAAGCAATGTATAAGGATGAAGCTGTTGCTCTCTTAGCTCAGATTGTTTTCTTGCAGAGTATGATTTGGTACAATTTGCTTTTGTTTCTTTATGAGTTTGATGCTGCCAAGAACATGCTATCTGCACCTCCATCACAAGACACAGGTACAAATAACAAACAAACAATCAATTACATCTTATCTTACAATTCAAGCATCATAGCATGTGGGCCAAGGAATACAATGGTTGCAATTGGACTGAAAGTGTTGGTAGGACCTGCTCTAATGGCTTTGGCATCCATTGTCATTGGTTTAAGAAACACATTGTTTAAAGTTGCAATAGTTCAGGCAGCTCTACCACAAGGAATTGTTCCTTTTGTTTTTGCTAAAGAATATAATGTCCATCCATCCATCTTAAGCACTGCGATCTTGTTAGGAATGCTCATTGCCTTGCCAGTGGAATTGGCTTTCTACTTCCTCTTAGCACTTTGA
Protein sequence

>MsG0780036178.01.T01

MISLANVYHVITTTVPLYVTMILAYVSVKWFKIFTQEQCSGINKFVAKFSIPLLSFQVISSNNIYKMSLKLMYADFIQKLLAFVLLTAIIKISGKGRLKWIITGFSLSTLPNTLILGIPLLKAMYKDEAVALLAQIVFLQSMIWYNLLLFLYEFDAAKNMLSAPPSQDTGTNNKQTINYILSYNSSIIACGPRNTMVAIGLKVLVGPALMALASIVIGLRNTLFKVAIVQAALPQGIVPFVFAKEYNVHPSILSTAILLGMLIALPVELAFYFLLAL*