AlfalfaGEDB | MsG0780036178.01

M. sativa cultivar ZhongmuNo.1 / MsG0780036178.01

KEGG: K13947
GO: GO:0016021 GO:0055085
PFAM: PF03547

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036178.01.T01	KAG5013902.1	72.757	301	58	2	1	277	1	301	1.63E-148	427

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036178.01.T01	Q0JJV0	52.805	303	113	2	1	273	1	303	5.08E-106	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036178.01.T01	A0A4D6LVU5	64.486	321	70	4	1	277	1	321	3.00e-139	404

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000632.01	MsG0780036178.01	0.809689	1.671374e-50	9.879102e-48
MsG0180001200.01	MsG0780036178.01	0.819695	1.014526e-52	7.863292e-50
MsG0280008395.01	MsG0780036178.01	0.800720	1.262413e-48	5.920206e-46
MsG0580029418.01	MsG0780036178.01	0.809945	1.471899e-50	8.758762e-48
MsG0780036178.01	MsG0780040966.01	0.817632	2.982239e-52	2.183336e-49
MsG0780036178.01	MsG0880041858.01	0.821724	3.468370e-53	2.844455e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036178.01.T01	MTR_7g009370	93.750	176	11	0	1	176	1	176	6.20e-115	335
MsG0780036178.01.T01	MTR_7g009370	90.196	102	10	0	176	277	256	357	6.80e-55	181
MsG0780036178.01.T01	MTR_6g011400	72.067	179	46	2	1	175	1	179	6.78e-86	261
MsG0780036178.01.T01	MTR_6g011400	71.569	102	29	0	176	277	260	361	8.28e-44	152
MsG0780036178.01.T01	MTR_8g107360	54.651	172	77	1	1	171	1	172	6.12e-58	193
MsG0780036178.01.T01	MTR_8g107360	68.132	91	29	0	187	277	434	524	1.58e-33	128
MsG0780036178.01.T01	MTR_6g069510	58.025	162	68	0	1	162	1	162	1.16e-57	194
MsG0780036178.01.T01	MTR_6g069510	64.835	91	32	0	187	277	514	604	5.91e-32	124
MsG0780036178.01.T01	MTR_7g089360	58.228	158	66	0	1	158	1	158	2.01e-57	193
MsG0780036178.01.T01	MTR_7g089360	63.736	91	33	0	187	277	501	591	8.20e-31	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780036178.01.T01	AT5G15100	53.005	183	81	2	1	178	1	183	9.00e-60	194
MsG0780036178.01.T01	AT5G15100	57.843	102	43	0	176	277	266	367	2.48e-32	122
MsG0780036178.01.T01	AT1G73590	58.025	162	68	0	1	162	1	162	2.88e-56	191
MsG0780036178.01.T01	AT1G73590	58.824	102	42	0	176	277	521	622	4.24e-29	116
MsG0780036178.01.T01	AT1G23080	56.962	158	68	0	1	158	1	158	1.33e-53	182
MsG0780036178.01.T01	AT1G23080	56.962	158	68	0	1	158	1	158	3.55e-53	182
MsG0780036178.01.T01	AT1G23080	62.637	91	34	0	187	277	525	615	2.36e-27	111
MsG0780036178.01.T01	AT1G23080	56.962	158	68	0	1	158	1	158	3.55e-53	182
MsG0780036178.01.T01	AT1G23080	62.637	91	34	0	187	277	525	615	2.36e-27	111
MsG0780036178.01.T01	AT1G23080	56.962	158	68	0	1	158	1	158	3.64e-53	182

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Find 47 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGTAGAAAGCCAATTCCAC+TGG	0.581046	7:+4340440	None:intergenic
AATCAGCATACATGAGTTTA+AGG	0.223359	7:+4343136	None:intergenic
AATGCTCATTGCCTTGCCAG+TGG	0.628295	7:-4340456	MsG0780036178.01.T01:CDS
ACAAAAGGAACAATTCCTTG+TGG	0.718693	7:+4340629	None:intergenic
ACTGCAATTATTAAGATTAG+TGG	0.327487	7:-4343081	MsG0780036178.01.T01:CDS
ACTTCCTCTTAGCACTTTGA+AGG	0.375893	7:-4340421	None:intergenic
AGGAATACAATGGTTGCAAT+TGG	0.442619	7:-4341456	MsG0780036178.01.T01:CDS
AGGACCTGCTCTAATGGCTT+TGG	0.407779	7:-4341418	MsG0780036178.01.T01:CDS
AGGTGCAGATAGCATGTTCT+TGG	0.455822	7:+4342870	None:intergenic
AGTATCATTGTTACATATAA+TGG	0.218778	7:+4343294	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACAGGAGACTTGATTA+CGG	+	Chr7:4341054-4341073	None:intergenic	30.0%
AATCAGCATACATGAGTTTA+AGG	+	Chr7:4340630-4340649	None:intergenic	30.0%
ACTTAGTATTTGGTATTCCT+CGG	+	Chr7:4341130-4341149	None:intergenic	30.0%
AGTTCCTAATGTTTACTTGA+AGG	-	Chr7:4341514-4341533	MsG0780036178.01.T01:intron	30.0%
ATCAAACTTTACTTACCTTC+CGG	-	Chr7:4342828-4342847	MsG0780036178.01.T01:CDS	30.0%
ATCTCTCACAAATATCTAGA+TGG	+	Chr7:4341796-4341815	None:intergenic	30.0%
ATTATGATCTCCTTGTGATA+AGG	+	Chr7:4341918-4341937	None:intergenic	30.0%
ATTTACTCTTTACGAATGGT+TGG	-	Chr7:4342688-4342707	MsG0780036178.01.T01:intron	30.0%
CTTCATTAATAGGCATCATT+TGG	-	Chr7:4341674-4341693	MsG0780036178.01.T01:intron	30.0%
CTTCCTAATACTTTGATTCT+TGG	-	Chr7:4340751-4340770	MsG0780036178.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	4340424	4343361	4340424	ID=MsG0780036178.01;Name=MsG0780036178.01
Chr7	mRNA	4340424	4343361	4340424	ID=MsG0780036178.01.T01;Parent=MsG0780036178.01;Name=MsG0780036178.01.T01;_AED=0.23;_eAED=0.23;_QI=0\|0\|0\|1\|0.33\|0.25\|4\|0\|277
Chr7	exon	4342810	4343361	4342810	ID=MsG0780036178.01.T01:exon:2465;Parent=MsG0780036178.01.T01
Chr7	exon	4341365	4341502	4341365	ID=MsG0780036178.01.T01:exon:2464;Parent=MsG0780036178.01.T01
Chr7	exon	4340584	4340660	4340584	ID=MsG0780036178.01.T01:exon:2463;Parent=MsG0780036178.01.T01
Chr7	exon	4340424	4340490	4340424	ID=MsG0780036178.01.T01:exon:2462;Parent=MsG0780036178.01.T01
Chr7	CDS	4342810	4343361	4342810	ID=MsG0780036178.01.T01:cds;Parent=MsG0780036178.01.T01
Chr7	CDS	4341365	4341502	4341365	ID=MsG0780036178.01.T01:cds;Parent=MsG0780036178.01.T01
Chr7	CDS	4340584	4340660	4340584	ID=MsG0780036178.01.T01:cds;Parent=MsG0780036178.01.T01
Chr7	CDS	4340424	4340490	4340424	ID=MsG0780036178.01.T01:cds;Parent=MsG0780036178.01.T01

Gene Sequence

>MsG0780036178.01.T01

ATGATTTCCTTAGCCAATGTTTATCATGTAATAACAACAACTGTCCCATTATATGTAACAATGATACTAGCCTATGTCTCAGTGAAATGGTTCAAGATCTTCACACAAGAACAATGTTCAGGAATAAACAAATTTGTTGCAAAATTCTCAATCCCTCTTTTATCATTTCAAGTCATTTCTTCCAACAATATCTACAAAATGAGCCTTAAACTCATGTATGCTGATTTCATTCAGAAACTTCTTGCATTTGTTCTCTTAACTGCAATTATTAAGATTAGTGGTAAAGGTCGTTTGAAATGGATTATAACTGGTTTTTCATTATCAACACTTCCTAATACTTTGATTCTTGGAATTCCATTGTTAAAAGCAATGTATAAGGATGAAGCTGTTGCTCTCTTAGCTCAGATTGTTTTCTTGCAGAGTATGATTTGGTACAATTTGCTTTTGTTTCTTTATGAGTTTGATGCTGCCAAGAACATGCTATCTGCACCTCCATCACAAGACACAGGTACAAATAACAAACAAACAATCAATTACATCTTATCTTACAATTCAAGCATCATAGCATGTGGGCCAAGGAATACAATGGTTGCAATTGGACTGAAAGTGTTGGTAGGACCTGCTCTAATGGCTTTGGCATCCATTGTCATTGGTTTAAGAAACACATTGTTTAAAGTTGCAATAGTTCAGGCAGCTCTACCACAAGGAATTGTTCCTTTTGTTTTTGCTAAAGAATATAATGTCCATCCATCCATCTTAAGCACTGCGATCTTGTTAGGAATGCTCATTGCCTTGCCAGTGGAATTGGCTTTCTACTTCCTCTTAGCACTTTGA

Protein sequence

>MsG0780036178.01.T01

MISLANVYHVITTTVPLYVTMILAYVSVKWFKIFTQEQCSGINKFVAKFSIPLLSFQVISSNNIYKMSLKLMYADFIQKLLAFVLLTAIIKISGKGRLKWIITGFSLSTLPNTLILGIPLLKAMYKDEAVALLAQIVFLQSMIWYNLLLFLYEFDAAKNMLSAPPSQDTGTNNKQTINYILSYNSSIIACGPRNTMVAIGLKVLVGPALMALASIVIGLRNTLFKVAIVQAALPQGIVPFVFAKEYNVHPSILSTAILLGMLIALPVELAFYFLLAL*