Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000632.01.T01 | XP_003588697.1 | 77.273 | 242 | 24 | 2 | 1 | 211 | 93 | 334 | 9.36E-125 | 369 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000632.01.T01 | Q9LFM5 | 54.132 | 242 | 78 | 3 | 1 | 211 | 94 | 333 | 6.45E-79 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000632.01.T01 | G7I6C3 | 77.273 | 242 | 24 | 2 | 1 | 211 | 93 | 334 | 4.47e-125 | 369 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048357.01 | MsG0180000632.01 | 0.874063 | 9.050191e-68 | 4.017007e-64 |
| MsG0180000632.01 | MsG0180000994.01 | 0.813544 | 2.426327e-51 | 1.589098e-48 |
| MsG0180000632.01 | MsG0180001200.01 | 0.881312 | 2.665209e-70 | 1.553757e-66 |
| MsG0180000632.01 | MsG0180001771.01 | 0.871982 | 4.509585e-67 | 1.854899e-63 |
| MsG0180000632.01 | MsG0180003741.01 | 0.817432 | 3.308205e-52 | 2.408915e-49 |
| MsG0180000632.01 | MsG0180005540.01 | 0.820697 | 5.979970e-53 | 4.765672e-50 |
| MsG0180000632.01 | MsG0280007305.01 | 0.863551 | 2.296656e-64 | 6.989445e-61 |
| MsG0180000632.01 | MsG0280007414.01 | 0.848097 | 7.614230e-60 | 1.381830e-56 |
| MsG0180000632.01 | MsG0280008362.01 | 0.818032 | 2.421669e-52 | 1.792481e-49 |
| MsG0180000632.01 | MsG0280008391.01 | 0.822204 | 2.684282e-53 | 2.231783e-50 |
| MsG0180000632.01 | MsG0280008392.01 | 0.810877 | 9.262786e-51 | 5.649607e-48 |
| MsG0180000632.01 | MsG0280008395.01 | 0.817771 | 2.773873e-52 | 2.038692e-49 |
| MsG0180000632.01 | MsG0280010163.01 | 0.843766 | 1.145183e-58 | 1.810203e-55 |
| MsG0180000632.01 | MsG0280010293.01 | 0.817238 | 3.658541e-52 | 2.649704e-49 |
| MsG0180000632.01 | MsG0280010320.01 | 0.802366 | 5.805987e-49 | 2.838963e-46 |
| MsG0180000632.01 | MsG0380011496.01 | 0.849318 | 3.491742e-60 | 6.594335e-57 |
| MsG0180000632.01 | MsG0380011501.01 | 0.840451 | 8.625418e-58 | 1.229155e-54 |
| MsG0180000632.01 | MsG0380011675.01 | 0.808982 | 2.369465e-50 | 1.374315e-47 |
| MsG0180000632.01 | MsG0380014612.01 | 0.829506 | 4.956285e-55 | 5.082470e-52 |
| MsG0180000632.01 | MsG0380016465.01 | 0.829717 | 4.403468e-55 | 4.544079e-52 |
| MsG0180000632.01 | MsG0380016466.01 | 0.814501 | 1.492121e-51 | 1.002958e-48 |
| MsG0180000632.01 | MsG0380017869.01 | 0.817601 | 3.030917e-52 | 2.217068e-49 |
| MsG0180000632.01 | MsG0480018909.01 | 0.849867 | 2.453552e-60 | 4.717053e-57 |
| MsG0180000632.01 | MsG0480020096.01 | 0.810576 | 1.076217e-50 | 6.511173e-48 |
| MsG0180000632.01 | MsG0480024022.01 | 0.817668 | 2.926552e-52 | 2.144749e-49 |
| MsG0180000632.01 | MsG0580024094.01 | 0.832430 | 9.496864e-56 | 1.061197e-52 |
| MsG0180000632.01 | MsG0580026198.01 | 0.815642 | 8.326815e-52 | 5.773417e-49 |
| MsG0180000632.01 | MsG0580027925.01 | 0.824104 | 9.671712e-54 | 8.485407e-51 |
| MsG0180000632.01 | MsG0580028436.01 | 0.802266 | 6.087178e-49 | 2.968789e-46 |
| MsG0180000632.01 | MsG0580029405.01 | 0.851278 | 9.846843e-61 | 1.982819e-57 |
| MsG0180000632.01 | MsG0580029406.01 | 0.845615 | 3.636171e-59 | 6.093848e-56 |
| MsG0180000632.01 | MsG0580029417.01 | 0.860346 | 2.202824e-63 | 6.002141e-60 |
| MsG0180000632.01 | MsG0580029418.01 | 0.895586 | 8.329344e-76 | 8.697515e-72 |
| MsG0180000632.01 | MsG0680031342.01 | 0.811612 | 6.416873e-51 | 3.990204e-48 |
| MsG0180000632.01 | MsG0680031428.01 | 0.804384 | 2.217152e-49 | 1.141583e-46 |
| MsG0180000632.01 | MsG0680031707.01 | 0.906830 | 9.755876e-81 | 1.682005e-76 |
| MsG0180000632.01 | MsG0680033143.01 | 0.815366 | 9.593633e-52 | 6.601210e-49 |
| MsG0180000632.01 | MsG0680034835.01 | 0.820877 | 5.437521e-53 | 4.355395e-50 |
| MsG0180000632.01 | MsG0680035658.01 | 0.801264 | 9.772899e-49 | 4.646818e-46 |
| MsG0180000632.01 | MsG0680035683.01 | 0.855658 | 5.443870e-62 | 1.266094e-58 |
| MsG0180000632.01 | MsG0780036148.01 | 0.822119 | 2.809706e-53 | 2.330287e-50 |
| MsG0180000632.01 | MsG0780036178.01 | 0.809689 | 1.671374e-50 | 9.879102e-48 |
| MsG0180000632.01 | MsG0780040846.01 | 0.821940 | 3.091009e-53 | 2.550597e-50 |
| MsG0180000632.01 | MsG0780040966.01 | 0.848165 | 7.294582e-60 | 1.326725e-56 |
| MsG0180000632.01 | MsG0780041676.01 | 0.834566 | 2.783084e-56 | 3.315634e-53 |
| MsG0180000632.01 | MsG0780041698.01 | 0.806613 | 7.557062e-50 | 4.119956e-47 |
| MsG0180000632.01 | MsG0880041858.01 | 0.873209 | 1.754951e-67 | 7.553960e-64 |
| MsG0180000632.01 | MsG0880042442.01 | 0.816276 | 6.012166e-52 | 4.241460e-49 |
| MsG0180000632.01 | MsG0880045585.01 | 0.821386 | 4.150945e-53 | 3.372122e-50 |
| MsG0180000632.01 | MsG0880045586.01 | 0.833706 | 4.572359e-56 | 5.307634e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000632.01.T01 | MTR_1g011630 | 77.273 | 242 | 24 | 2 | 1 | 211 | 93 | 334 | 1.13e-128 | 369 |
| MsG0180000632.01.T01 | MTR_6g086870 | 46.185 | 249 | 96 | 3 | 1 | 211 | 97 | 345 | 3.24e-69 | 217 |
| MsG0180000632.01.T01 | MTR_1g008380 | 47.177 | 248 | 97 | 3 | 1 | 214 | 119 | 366 | 7.25e-68 | 214 |
| MsG0180000632.01.T01 | MTR_3g109520 | 45.528 | 246 | 99 | 4 | 1 | 211 | 116 | 361 | 1.19e-65 | 208 |
| MsG0180000632.01.T01 | MTR_7g099330 | 42.798 | 243 | 105 | 4 | 1 | 211 | 101 | 341 | 1.79e-64 | 205 |
| MsG0180000632.01.T01 | MTR_7g099160 | 42.798 | 243 | 105 | 4 | 1 | 211 | 222 | 462 | 9.08e-64 | 206 |
| MsG0180000632.01.T01 | MTR_1g069275 | 41.224 | 245 | 110 | 4 | 1 | 211 | 102 | 346 | 7.00e-61 | 196 |
| MsG0180000632.01.T01 | MTR_1g046230 | 40.726 | 248 | 110 | 3 | 1 | 211 | 101 | 348 | 1.59e-60 | 195 |
| MsG0180000632.01.T01 | MTR_8g432640 | 36.364 | 242 | 123 | 4 | 1 | 211 | 83 | 324 | 2.07e-41 | 144 |
| MsG0180000632.01.T01 | MTR_5g033260 | 35.124 | 242 | 126 | 4 | 1 | 211 | 83 | 324 | 1.48e-37 | 134 |
| MsG0180000632.01.T01 | MTR_7g107690 | 31.174 | 247 | 129 | 4 | 1 | 211 | 85 | 326 | 8.88e-37 | 132 |
| MsG0180000632.01.T01 | MTR_4g051642 | 33.198 | 247 | 124 | 5 | 1 | 211 | 84 | 325 | 1.76e-36 | 132 |
| MsG0180000632.01.T01 | MTR_3g088945 | 31.984 | 247 | 127 | 4 | 1 | 211 | 84 | 325 | 9.99e-36 | 130 |
| MsG0180000632.01.T01 | MTR_3g088925 | 31.984 | 247 | 127 | 4 | 1 | 211 | 84 | 325 | 1.01e-35 | 130 |
| MsG0180000632.01.T01 | MTR_7g107710 | 31.452 | 248 | 128 | 6 | 1 | 211 | 83 | 325 | 1.32e-33 | 124 |
| MsG0180000632.01.T01 | MTR_3g088955 | 30.769 | 247 | 130 | 4 | 1 | 211 | 84 | 325 | 4.27e-33 | 123 |
| MsG0180000632.01.T01 | MTR_3g096030 | 32.967 | 91 | 57 | 2 | 1 | 87 | 59 | 149 | 2.66e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180000632.01.T01 | AT5G11320 | 54.321 | 243 | 78 | 3 | 1 | 212 | 94 | 334 | 6.85e-82 | 248 |
| MsG0180000632.01.T01 | AT5G11320 | 54.132 | 242 | 78 | 3 | 1 | 211 | 94 | 333 | 6.58e-80 | 244 |
| MsG0180000632.01.T01 | AT4G32540 | 48.770 | 244 | 90 | 5 | 1 | 211 | 98 | 339 | 2.53e-72 | 225 |
| MsG0180000632.01.T01 | AT4G32540 | 48.374 | 246 | 90 | 5 | 1 | 211 | 98 | 341 | 4.48e-72 | 225 |
| MsG0180000632.01.T01 | AT4G13260 | 45.783 | 249 | 100 | 3 | 1 | 214 | 105 | 353 | 3.15e-68 | 215 |
| MsG0180000632.01.T01 | AT5G25620 | 46.341 | 246 | 97 | 4 | 1 | 211 | 109 | 354 | 1.21e-67 | 213 |
| MsG0180000632.01.T01 | AT5G25620 | 46.341 | 246 | 97 | 4 | 1 | 211 | 109 | 354 | 1.55e-67 | 214 |
| MsG0180000632.01.T01 | AT4G13260 | 44.628 | 242 | 99 | 3 | 8 | 214 | 9 | 250 | 1.81e-63 | 199 |
| MsG0180000632.01.T01 | AT1G04180 | 45.714 | 245 | 99 | 4 | 1 | 211 | 102 | 346 | 2.82e-63 | 202 |
| MsG0180000632.01.T01 | AT1G04610 | 42.169 | 249 | 106 | 3 | 1 | 211 | 114 | 362 | 1.30e-62 | 201 |
| MsG0180000632.01.T01 | AT2G33230 | 43.373 | 249 | 103 | 3 | 1 | 211 | 109 | 357 | 1.25e-61 | 198 |
| MsG0180000632.01.T01 | AT4G28720 | 40.323 | 248 | 111 | 3 | 1 | 211 | 102 | 349 | 2.68e-61 | 197 |
| MsG0180000632.01.T01 | AT5G43890 | 41.935 | 248 | 107 | 4 | 1 | 211 | 102 | 349 | 7.63e-60 | 193 |
| MsG0180000632.01.T01 | AT4G13260 | 45.545 | 202 | 79 | 2 | 1 | 171 | 105 | 306 | 4.87e-57 | 183 |
| MsG0180000632.01.T01 | AT1G48910 | 35.391 | 243 | 124 | 5 | 1 | 211 | 82 | 323 | 5.12e-43 | 149 |
| MsG0180000632.01.T01 | AT1G21430 | 34.146 | 246 | 123 | 5 | 1 | 212 | 86 | 326 | 1.21e-38 | 137 |
Find 33 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTCAAGTTCTCAAATT+TGG | 0.134264 | 1:+8927464 | MsG0180000632.01.T01:CDS |
| GTTAGTTTCAAGCTTCTTCT+TGG | 0.280395 | 1:+8928625 | MsG0180000632.01.T01:CDS |
| TAGCTATGGGATTATATAAA+TGG | 0.285172 | 1:+8928570 | MsG0180000632.01.T01:CDS |
| GTTGCAAGTTTGAGTTCTAT+TGG | 0.313027 | 1:-8928689 | None:intergenic |
| ATGTTTGGTTTCTCAACATA+TGG | 0.323559 | 1:+8928545 | MsG0180000632.01.T01:CDS |
| CATACAAGTGATTATAAATC+TGG | 0.355020 | 1:+8927613 | MsG0180000632.01.T01:CDS |
| GATGCAATAATCTTAGCAAC+AGG | 0.380414 | 1:+8928943 | MsG0180000632.01.T01:CDS |
| TAATCACTTGTATGAGCAAC+AGG | 0.388008 | 1:-8927604 | None:intergenic |
| CCTTGGCTTATTGTTGCTAC+TGG | 0.412409 | 1:+8927526 | MsG0180000632.01.T01:CDS |
| TTAGTTTCAAGCTTCTTCTT+GGG | 0.427173 | 1:+8928626 | MsG0180000632.01.T01:CDS |
| TGTTCCATACCATGAATTGT+TGG | 0.436540 | 1:-8927571 | None:intergenic |
| ATTCTTCCAAGAGATATGTT+TGG | 0.437726 | 1:+8928530 | MsG0180000632.01.T01:CDS |
| GGTATCAAGAGGCCTAAAAC+TGG | 0.451158 | 1:+8928665 | MsG0180000632.01.T01:CDS |
| ACAAGAGCAATGTGCCTACT+TGG | 0.453063 | 1:+8928968 | MsG0180000632.01.T01:CDS |
| GAGAAACCAAACATATCTCT+TGG | 0.462714 | 1:-8928536 | None:intergenic |
| TTGGGAAACACCAATCACTA+TGG | 0.465852 | 1:+8928644 | MsG0180000632.01.T01:CDS |
| ATAGAACTCAAACTTGCAAC+AGG | 0.466421 | 1:+8928692 | MsG0180000632.01.T01:CDS |
| CAAATAGCACAAATTAAATC+CGG | 0.476052 | 1:+8928740 | MsG0180000632.01.T01:CDS |
| GTGAAAGAGATAACAAGAAA+TGG | 0.481980 | 1:+8928887 | MsG0180000632.01.T01:CDS |
| ATCACTTTGATATTCATCCT+AGG | 0.490915 | 1:+8927413 | MsG0180000632.01.T01:CDS |
| CCTCTTGATACCATAGTGAT+TGG | 0.496998 | 1:-8928654 | None:intergenic |
| CTCAACATATGGAATAGCTA+TGG | 0.500774 | 1:+8928556 | MsG0180000632.01.T01:CDS |
| TCAACATATGGAATAGCTAT+GGG | 0.521973 | 1:+8928557 | MsG0180000632.01.T01:CDS |
| TTCAAGTTCTCAAATTTGGA+TGG | 0.536810 | 1:+8927468 | MsG0180000632.01.T01:CDS |
| AAAACTCCTGTACTTGATGT+TGG | 0.551364 | 1:+8928716 | MsG0180000632.01.T01:CDS |
| AATATCAAAGTGATCAGCAT+AGG | 0.584130 | 1:-8927404 | None:intergenic |
| ATTTGACCAACATCAAGTAC+AGG | 0.585749 | 1:-8928722 | None:intergenic |
| CAATGTGCCTACTTGGCTCA+AGG | 0.592907 | 1:+8928975 | MsG0180000632.01.T01:CDS |
| AGAACAGTTTGATTAAACCT+AGG | 0.595686 | 1:-8927430 | None:intergenic |
| TTAATATTGTAGGTGATGGA+AGG | 0.640132 | 1:+8928863 | MsG0180000632.01.T01:intron |
| CCAATCACTATGGTATCAAG+AGG | 0.641108 | 1:+8928654 | MsG0180000632.01.T01:CDS |
| CCAGTAGCAACAATAAGCCA+AGG | 0.647996 | 1:-8927526 | None:intergenic |
| ATGCAATAATCTTAGCAACA+GGG | 0.685349 | 1:+8928944 | MsG0180000632.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTAATAATTTATT+AGG | + | Chr1:8928785-8928804 | MsG0180000632.01.T01:intron | 0.0% |
| !! | TGATATTAAAAAAAAAAATG+CGG | + | Chr1:8927794-8927813 | MsG0180000632.01.T01:intron | 10.0% |
| !!! | TTTGATATGTATATTTTTTT+AGG | + | Chr1:8928820-8928839 | MsG0180000632.01.T01:intron | 10.0% |
| !! | AAAGAAATATTAAATGATGA+AGG | - | Chr1:8928128-8928147 | None:intergenic | 15.0% |
| !! | ATAAATAATCAAGGTAATAA+AGG | + | Chr1:8928167-8928186 | MsG0180000632.01.T01:intron | 15.0% |
| !! | ATTATTAAAATTACCCAAAT+GGG | - | Chr1:8928445-8928464 | None:intergenic | 15.0% |
| !!! | GCAATATTTTATATGATTTA+AGG | + | Chr1:8928502-8928521 | MsG0180000632.01.T01:intron | 15.0% |
| !! | AAATGACAATTAAAAAGGAA+CGG | + | Chr1:8928258-8928277 | MsG0180000632.01.T01:intron | 20.0% |
| !! | ATTGAAATTCGAAAGAAAAA+AGG | - | Chr1:8927760-8927779 | None:intergenic | 20.0% |
| !! | ATTGTTTAGTACTTAAAATG+AGG | + | Chr1:8928399-8928418 | MsG0180000632.01.T01:intron | 20.0% |
| !! | GATTATTAAAATTACCCAAA+TGG | - | Chr1:8928446-8928465 | None:intergenic | 20.0% |
| !! | TTGAAATTCGAAAGAAAAAA+GGG | - | Chr1:8927759-8927778 | None:intergenic | 20.0% |
| !!! | AACTTGTCTACTAATTTTAA+TGG | - | Chr1:8928599-8928618 | None:intergenic | 20.0% |
| !!! | AGTACAAAAATAAAAGGTTT+TGG | + | Chr1:8927641-8927660 | MsG0180000632.01.T01:CDS | 20.0% |
| !!! | ATATGTTATTTTTTCCCATT+TGG | + | Chr1:8928428-8928447 | MsG0180000632.01.T01:intron | 20.0% |
| !!! | TATGTATATTTTTTTAGGCT+AGG | + | Chr1:8928825-8928844 | MsG0180000632.01.T01:intron | 20.0% |
| !!! | TATGTTATTTTTTCCCATTT+GGG | + | Chr1:8928429-8928448 | MsG0180000632.01.T01:intron | 20.0% |
| ! | AAAAAAAATGCGGTTTAATG+TGG | + | Chr1:8927804-8927823 | MsG0180000632.01.T01:intron | 25.0% |
| ! | AAATCACGACAAAAAAATGA+TGG | - | Chr1:8927955-8927974 | None:intergenic | 25.0% |
| ! | AATTAAATCCGGTAACATTA+AGG | + | Chr1:8928751-8928770 | MsG0180000632.01.T01:intron | 25.0% |
| ! | CAAATAGCACAAATTAAATC+CGG | + | Chr1:8928740-8928759 | MsG0180000632.01.T01:CDS | 25.0% |
| ! | CATACAAGTGATTATAAATC+TGG | + | Chr1:8927613-8927632 | MsG0180000632.01.T01:CDS | 25.0% |
| ! | CTGCAAAATGACAATTAAAA+AGG | + | Chr1:8928253-8928272 | MsG0180000632.01.T01:intron | 25.0% |
| ! | TAGCTATGGGATTATATAAA+TGG | + | Chr1:8928570-8928589 | MsG0180000632.01.T01:CDS | 25.0% |
| ! | TTAATACATGTTTCGATTCA+TGG | + | Chr1:8927886-8927905 | MsG0180000632.01.T01:intron | 25.0% |
| ! | TTGATTAATATTGTAGGTGA+TGG | + | Chr1:8928859-8928878 | MsG0180000632.01.T01:intron | 25.0% |
| ! | TTGGGATTGATTAATATTGT+AGG | + | Chr1:8928853-8928872 | MsG0180000632.01.T01:intron | 25.0% |
| ! | TTTAATAAGGTCACTCATAA+AGG | + | Chr1:8928335-8928354 | MsG0180000632.01.T01:intron | 25.0% |
| !! | AAATGGTGCAAAATTTTTGA+TGG | + | Chr1:8928904-8928923 | MsG0180000632.01.T01:CDS | 25.0% |
| !! | ATTTTCAGTATTTTTCACCT+TGG | + | Chr1:8927509-8927528 | MsG0180000632.01.T01:CDS | 25.0% |
| !! | GTTCTGAGTACAAAAATAAA+AGG | + | Chr1:8927635-8927654 | MsG0180000632.01.T01:CDS | 25.0% |
| !! | TTGATTCAAGTTCTCAAATT+TGG | + | Chr1:8927464-8927483 | MsG0180000632.01.T01:CDS | 25.0% |
| !!! | AAATAAAAGGTTTTGGTCAT+TGG | + | Chr1:8927648-8927667 | MsG0180000632.01.T01:CDS | 25.0% |
| !!! | AATTTTTGATGGACAAGAAA+AGG | + | Chr1:8928915-8928934 | MsG0180000632.01.T01:CDS | 25.0% |
| !!! | TTTTTAGGCTAGGATTAATT+GGG | + | Chr1:8928835-8928854 | MsG0180000632.01.T01:intron | 25.0% |
| !!! | TTTTTTAGGCTAGGATTAAT+TGG | + | Chr1:8928834-8928853 | MsG0180000632.01.T01:intron | 25.0% |
| AAAGTGACCATTAAAAGGAA+CGG | - | Chr1:8928026-8928045 | None:intergenic | 30.0% | |
| AATATCAAAGTGATCAGCAT+AGG | - | Chr1:8927407-8927426 | None:intergenic | 30.0% | |
| AGAACAGTTTGATTAAACCT+AGG | - | Chr1:8927433-8927452 | None:intergenic | 30.0% | |
| ATCACTTTGATATTCATCCT+AGG | + | Chr1:8927413-8927432 | MsG0180000632.01.T01:CDS | 30.0% | |
| ATGCAATAATCTTAGCAACA+GGG | + | Chr1:8928944-8928963 | MsG0180000632.01.T01:CDS | 30.0% | |
| ATTCTTCCAAGAGATATGTT+TGG | + | Chr1:8928530-8928549 | MsG0180000632.01.T01:CDS | 30.0% | |
| CTCTCTGCAATAAATAATCA+AGG | + | Chr1:8928158-8928177 | MsG0180000632.01.T01:intron | 30.0% | |
| GTAACATACCTTAATGTTAC+CGG | - | Chr1:8928762-8928781 | None:intergenic | 30.0% | |
| GTGAAAGAGATAACAAGAAA+TGG | + | Chr1:8928887-8928906 | MsG0180000632.01.T01:CDS | 30.0% | |
| TCAACATATGGAATAGCTAT+GGG | + | Chr1:8928557-8928576 | MsG0180000632.01.T01:CDS | 30.0% | |
| TTAGTTTCAAGCTTCTTCTT+GGG | + | Chr1:8928626-8928645 | MsG0180000632.01.T01:CDS | 30.0% | |
| ! | ATGTTTGGTTTCTCAACATA+TGG | + | Chr1:8928545-8928564 | MsG0180000632.01.T01:CDS | 30.0% |
| ! | TTCAAGTTCTCAAATTTGGA+TGG | + | Chr1:8927468-8927487 | MsG0180000632.01.T01:CDS | 30.0% |
| ! | TTTTCCAACAATTCATGGTA+TGG | + | Chr1:8927567-8927586 | MsG0180000632.01.T01:CDS | 30.0% |
| !! | ACTTGTGAGTTTGTTCTTTT+TGG | + | Chr1:8928468-8928487 | MsG0180000632.01.T01:intron | 30.0% |
| !! | TAGCTAGAACTTTGAAATGA+CGG | - | Chr1:8927989-8928008 | None:intergenic | 30.0% |
| !! | TTAATATTGTAGGTGATGGA+AGG | + | Chr1:8928863-8928882 | MsG0180000632.01.T01:intron | 30.0% |
| !! | TTCCTTTTAATGGTCACTTT+TGG | + | Chr1:8928026-8928045 | MsG0180000632.01.T01:intron | 30.0% |
| !!! | TCCTTTTAATGGTCACTTTT+GGG | + | Chr1:8928027-8928046 | MsG0180000632.01.T01:intron | 30.0% |
| !!! | TGATGGTTTTGACAAAATTG+CGG | - | Chr1:8927938-8927957 | None:intergenic | 30.0% |
| !!! | TTGTTCTTTTTGGCTAACTT+TGG | + | Chr1:8928478-8928497 | MsG0180000632.01.T01:intron | 30.0% |
| AAAACTCCTGTACTTGATGT+TGG | + | Chr1:8928716-8928735 | MsG0180000632.01.T01:CDS | 35.0% | |
| ACCCAAAAGTGACCATTAAA+AGG | - | Chr1:8928031-8928050 | None:intergenic | 35.0% | |
| ATAGAACTCAAACTTGCAAC+AGG | + | Chr1:8928692-8928711 | MsG0180000632.01.T01:CDS | 35.0% | |
| ATTTGACCAACATCAAGTAC+AGG | - | Chr1:8928725-8928744 | None:intergenic | 35.0% | |
| CCATGAATTGTTGGAAAAAC+AGG | - | Chr1:8927565-8927584 | None:intergenic | 35.0% | |
| CTCAACATATGGAATAGCTA+TGG | + | Chr1:8928556-8928575 | MsG0180000632.01.T01:CDS | 35.0% | |
| GAGAAACCAAACATATCTCT+TGG | - | Chr1:8928539-8928558 | None:intergenic | 35.0% | |
| GATGCAATAATCTTAGCAAC+AGG | + | Chr1:8928943-8928962 | MsG0180000632.01.T01:CDS | 35.0% | |
| TAATCACTTGTATGAGCAAC+AGG | - | Chr1:8927607-8927626 | None:intergenic | 35.0% | |
| TGACAATTAAAAAGGAACGG+AGG | + | Chr1:8928261-8928280 | MsG0180000632.01.T01:intron | 35.0% | |
| TGTTCCATACCATGAATTGT+TGG | - | Chr1:8927574-8927593 | None:intergenic | 35.0% | |
| TTTGACAAAATTGCGGTCAT+AGG | - | Chr1:8927931-8927950 | None:intergenic | 35.0% | |
| ! | AGTTCTATTGGACCAGTTTT+AGG | - | Chr1:8928680-8928699 | None:intergenic | 35.0% |
| ! | CACATCGATTAAAGATGCAT+CGG | - | Chr1:8927830-8927849 | None:intergenic | 35.0% |
| ! | CATGGTATGGAACATTTTCA+TGG | + | Chr1:8927580-8927599 | MsG0180000632.01.T01:CDS | 35.0% |
| ! | GTTAGTTTCAAGCTTCTTCT+TGG | + | Chr1:8928625-8928644 | MsG0180000632.01.T01:CDS | 35.0% |
| ! | GTTGCAAGTTTGAGTTCTAT+TGG | - | Chr1:8928692-8928711 | None:intergenic | 35.0% |
| ! | TTTTTAACCTTGAGCCAAGT+AGG | - | Chr1:8928985-8929004 | None:intergenic | 35.0% |
| !! | CCTGTTTTTCCAACAATTCA+TGG | + | Chr1:8927562-8927581 | MsG0180000632.01.T01:CDS | 35.0% |
| !! | TTCTGGAATGGAAGTTAGTT+TGG | + | Chr1:8927679-8927698 | MsG0180000632.01.T01:intron | 35.0% |
| ACACAATGCTATGCCTCATT+TGG | + | Chr1:8927712-8927731 | MsG0180000632.01.T01:intron | 40.0% | |
| CCAATCACTATGGTATCAAG+AGG | + | Chr1:8928654-8928673 | MsG0180000632.01.T01:CDS | 40.0% | |
| CCTCTTGATACCATAGTGAT+TGG | - | Chr1:8928657-8928676 | None:intergenic | 40.0% | |
| TTGGGAAACACCAATCACTA+TGG | + | Chr1:8928644-8928663 | MsG0180000632.01.T01:CDS | 40.0% | |
| ! | ACTTCCTCCGTTCCTTTTAA+TGG | + | Chr1:8928016-8928035 | MsG0180000632.01.T01:intron | 40.0% |
| ! | TTGGTTGTGGAATTCTGGAA+TGG | + | Chr1:8927667-8927686 | MsG0180000632.01.T01:intron | 40.0% |
| !! | AAGGTTTTGGTCATTGGTTG+TGG | + | Chr1:8927654-8927673 | MsG0180000632.01.T01:intron | 40.0% |
| ACAAGAGCAATGTGCCTACT+TGG | + | Chr1:8928968-8928987 | MsG0180000632.01.T01:CDS | 45.0% | |
| CCAGTAGCAACAATAAGCCA+AGG | - | Chr1:8927529-8927548 | None:intergenic | 45.0% | |
| CCTTGGCTTATTGTTGCTAC+TGG | + | Chr1:8927526-8927545 | MsG0180000632.01.T01:CDS | 45.0% | |
| GAGTTTCGTGCAACCAAATG+AGG | - | Chr1:8927728-8927747 | None:intergenic | 45.0% | |
| GGTATCAAGAGGCCTAAAAC+TGG | + | Chr1:8928665-8928684 | MsG0180000632.01.T01:CDS | 45.0% | |
| GTGACCATTAAAAGGAACGG+AGG | - | Chr1:8928023-8928042 | None:intergenic | 45.0% | |
| ! | GGTCATTGGTTGTGGAATTC+TGG | + | Chr1:8927662-8927681 | MsG0180000632.01.T01:intron | 45.0% |
| !!! | TTATATTAATACTTTTAATA+AGG | + | Chr1:8928322-8928341 | MsG0180000632.01.T01:intron | 5.0% |
| CAATGTGCCTACTTGGCTCA+AGG | + | Chr1:8928975-8928994 | MsG0180000632.01.T01:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 8927397 | 8929008 | 8927397 | ID=MsG0180000632.01;Name=MsG0180000632.01 |
| Chr1 | mRNA | 8927397 | 8929008 | 8927397 | ID=MsG0180000632.01.T01;Parent=MsG0180000632.01;Name=MsG0180000632.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|1|3|0|214 |
| Chr1 | exon | 8927397 | 8927669 | 8927397 | ID=MsG0180000632.01.T01:exon:2150;Parent=MsG0180000632.01.T01 |
| Chr1 | exon | 8928524 | 8928761 | 8928524 | ID=MsG0180000632.01.T01:exon:2149;Parent=MsG0180000632.01.T01 |
| Chr1 | exon | 8928875 | 8929008 | 8928875 | ID=MsG0180000632.01.T01:exon:2148;Parent=MsG0180000632.01.T01 |
| Chr1 | CDS | 8927397 | 8927669 | 8927397 | ID=MsG0180000632.01.T01:cds;Parent=MsG0180000632.01.T01 |
| Chr1 | CDS | 8928524 | 8928761 | 8928524 | ID=MsG0180000632.01.T01:cds;Parent=MsG0180000632.01.T01 |
| Chr1 | CDS | 8928875 | 8929008 | 8928875 | ID=MsG0180000632.01.T01:cds;Parent=MsG0180000632.01.T01 |
| Gene Sequence |
| Protein sequence |
