AlfalfaGEDB | MsG0780040966.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040966.01

KEGG: -
GO: -
PFAM: PF08137

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040966.01.T01	XP_003625674.1	100	64	0	0	1	64	1	64	3.26E-39	133

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040966.01.T01	Q7XXN8	72.727	44	12	0	19	62	4	47	5.31E-19	75.1

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040966.01.T01	G7L3V3	100.000	64	0	0	1	64	1	64	1.56e-39	133

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048357.01	MsG0780040966.01	0.901606	2.260243e-78	3.077150e-74
MsG0180000404.01	MsG0780040966.01	0.803305	3.714930e-49	1.860399e-46
MsG0180000632.01	MsG0780040966.01	0.848165	7.294582e-60	1.326725e-56
MsG0180000994.01	MsG0780040966.01	0.820353	7.173344e-53	5.662586e-50
MsG0180001200.01	MsG0780040966.01	0.865328	6.395637e-65	2.072594e-61
MsG0180001771.01	MsG0780040966.01	0.846166	2.576219e-59	4.395041e-56
MsG0180003431.01	MsG0780040966.01	0.817088	3.953296e-52	2.851505e-49
MsG0180003741.01	MsG0780040966.01	0.861470	1.003434e-63	2.842437e-60
MsG0180005113.01	MsG0780040966.01	0.808839	2.542458e-50	1.468990e-47
MsG0180005540.01	MsG0780040966.01	0.834146	3.548404e-56	4.173635e-53
MsG0780040286.01	MsG0780040966.01	0.812209	4.756830e-51	3.005963e-48
MsG0780040432.01	MsG0780040966.01	0.819780	9.703455e-53	7.538972e-50
MsG0780040846.01	MsG0780040966.01	0.867280	1.536898e-65	5.335505e-62
MsG0780040966.01	MsG0780041205.01	0.804416	2.183534e-49	1.125158e-46
MsG0780040966.01	MsG0780041259.01	0.843252	1.570822e-58	2.443261e-55
MsG0780040966.01	MsG0780041676.01	0.824763	6.768063e-54	6.051782e-51
MsG0780040966.01	MsG0780041698.01	0.838513	2.749619e-57	3.691321e-54
MsG0780040966.01	MsG0880041858.01	0.863847	1.858071e-64	5.713754e-61
MsG0780040966.01	MsG0880042442.01	0.846843	1.683951e-59	2.936535e-56
MsG0780040966.01	MsG0880042958.01	0.813039	3.131694e-51	2.023055e-48
MsG0780040966.01	MsG0880042959.01	0.815885	7.351780e-52	5.130815e-49
MsG0780040966.01	MsG0880045585.01	0.833699	4.588892e-56	5.325743e-53
MsG0780040966.01	MsG0880045586.01	0.835115	2.024730e-56	2.451891e-53
MsG0780040966.01	MsG0880046636.01	0.807696	4.455593e-50	2.498317e-47
MsG0780040966.01	MsG0880046942.01	0.804299	2.309563e-49	1.186559e-46
MsG0280010839.01	MsG0780040966.01	0.804215	2.404057e-49	1.232420e-46
MsG0380011496.01	MsG0780040966.01	0.848618	5.465375e-60	1.008765e-56
MsG0380011501.01	MsG0780040966.01	0.852518	4.380266e-61	9.175978e-58
MsG0380011675.01	MsG0780040966.01	0.823163	1.605751e-53	1.371911e-50
MsG0680031342.01	MsG0780040966.01	0.828158	1.050494e-54	1.035700e-51
MsG0680031707.01	MsG0780040966.01	0.877649	5.306171e-69	2.688830e-65
MsG0680031959.01	MsG0780040966.01	0.844260	8.438516e-59	1.354707e-55
MsG0680033143.01	MsG0780040966.01	0.838385	2.967060e-57	3.967704e-54
MsG0680034835.01	MsG0780040966.01	0.813286	2.764380e-51	1.797759e-48
MsG0480018909.01	MsG0780040966.01	0.889540	2.209844e-73	1.790343e-69
MsG0480019279.01	MsG0780040966.01	0.819243	1.286361e-52	9.845566e-50
MsG0480020064.01	MsG0780040966.01	0.804630	1.969605e-49	1.020549e-46
MsG0480020096.01	MsG0780040966.01	0.824238	8.992968e-54	7.920129e-51
MsG0480024022.01	MsG0780040966.01	0.852443	4.601125e-61	9.615680e-58
MsG0580024094.01	MsG0780040966.01	0.800364	1.492369e-48	6.935953e-46
MsG0580025466.01	MsG0780040966.01	0.805188	1.505834e-49	7.915636e-47
MsG0580026000.01	MsG0780040966.01	0.811421	7.061760e-51	4.369329e-48
MsG0380016465.01	MsG0780040966.01	0.887510	1.339641e-72	9.991054e-69
MsG0380016466.01	MsG0780040966.01	0.816429	5.555402e-52	3.935299e-49
MsG0380017823.01	MsG0780040966.01	0.833252	5.934644e-56	6.796551e-53
MsG0380017869.01	MsG0780040966.01	0.833461	5.262358e-56	6.064322e-53
MsG0380017974.01	MsG0780040966.01	0.815153	1.069724e-51	7.317447e-49
MsG0580027925.01	MsG0780040966.01	0.837627	4.648853e-57	6.074515e-54
MsG0580029310.01	MsG0780040966.01	0.843642	1.236234e-58	1.946831e-55
MsG0580029405.01	MsG0780040966.01	0.845206	4.694013e-59	7.764205e-56
MsG0580029406.01	MsG0780040966.01	0.823301	1.491259e-53	1.279034e-50
MsG0580029417.01	MsG0780040966.01	0.877719	5.016659e-69	2.548964e-65
MsG0580029418.01	MsG0780040966.01	0.889229	2.920001e-73	2.335573e-69
MsG0280007305.01	MsG0780040966.01	0.860891	1.505783e-63	4.180337e-60
MsG0280007414.01	MsG0780040966.01	0.843615	1.256350e-58	1.976858e-55
MsG0280008390.01	MsG0780040966.01	0.826871	2.138852e-54	2.030836e-51
MsG0280008391.01	MsG0780040966.01	0.833260	5.906476e-56	6.765910e-53
MsG0280008392.01	MsG0780040966.01	0.833515	5.102625e-56	5.889992e-53
MsG0280008395.01	MsG0780040966.01	0.851853	6.768603e-61	1.388138e-57
MsG0280008397.01	MsG0780040966.01	0.809408	1.920451e-50	1.126704e-47
MsG0280010163.01	MsG0780040966.01	0.800386	1.476981e-48	6.868206e-46
MsG0280010320.01	MsG0780040966.01	0.832527	8.986779e-56	1.007110e-52
MsG0680035658.01	MsG0780040966.01	0.836861	7.302033e-57	9.320004e-54
MsG0680035683.01	MsG0780040966.01	0.819635	1.047051e-52	8.101717e-50
MsG0780036148.01	MsG0780040966.01	0.829724	4.384752e-55	4.525755e-52
MsG0780036178.01	MsG0780040966.01	0.817632	2.982239e-52	2.183336e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040966.01.T01	MTR_7g101850	100.000	64	0	0	1	64	1	64	3.95e-43	133
MsG0780040966.01.T01	MTR_1g063830	57.143	63	26	1	1	62	3	65	2.41e-20	76.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040966.01.T01	AT2G36985	72.727	44	12	0	19	62	4	47	5.42e-20	75.1
MsG0780040966.01.T01	AT3G53232	70.588	34	10	0	24	57	11	44	1.21e-12	56.6

Find 10 sgRNAs with CRISPR-Local

Find 10 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GATGCTGATGAGTACTATTT+TGG	0.208088	7:-84943197	None:intergenic
TGACCAAGTGACTACACTTT+TGG	0.325622	7:-84943257	None:intergenic
TGTGATCCGTGCAAGTCTTT+TGG	0.334940	7:+84943234	MsG0780040966.01.T01:CDS
AAAATCATTCATGGCAGTAA+AGG	0.489511	7:+84943155	None:intergenic
TGGCCAAAAGTGTAGTCACT+TGG	0.560139	7:+84943254	MsG0780040966.01.T01:CDS
CATCAGCATCAAGAACAAGA+AGG	0.581729	7:+84943210	MsG0780040966.01.T01:CDS
ACAAAAGCATGGCGATGCAA+CGG	0.595123	7:-84943311	None:intergenic
ATCAGCATCAAGAACAAGAA+GGG	0.607865	7:+84943211	MsG0780040966.01.T01:CDS
CTCATGATGACACAAAAGCA+TGG	0.644566	7:-84943322	None:intergenic
TAAAGGAAATTAGCAGCACA+AGG	0.665511	7:+84943172	MsG0780040966.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	ATCAGCATCAAGAACAAGAA+GGG	+	Chr7:84943211-84943230	MsG0780040966.01.T01:CDS	35.0%
	TAAAGGAAATTAGCAGCACA+AGG	+	Chr7:84943172-84943191	MsG0780040966.01.T01:CDS	35.0%
!	GATGCTGATGAGTACTATTT+TGG	-	Chr7:84943200-84943219	None:intergenic	35.0%
	CATCAGCATCAAGAACAAGA+AGG	+	Chr7:84943210-84943229	MsG0780040966.01.T01:CDS	40.0%
	CTCATGATGACACAAAAGCA+TGG	-	Chr7:84943325-84943344	None:intergenic	40.0%
!	TGACCAAGTGACTACACTTT+TGG	-	Chr7:84943260-84943279	None:intergenic	40.0%
!	TTTTGGCCAAAAGACTTGCA+CGG	-	Chr7:84943243-84943262	None:intergenic	40.0%
!	ACAAAAGCATGGCGATGCAA+CGG	-	Chr7:84943314-84943333	None:intergenic	45.0%
!	TGGCCAAAAGTGTAGTCACT+TGG	+	Chr7:84943254-84943273	MsG0780040966.01.T01:CDS	45.0%
!	TGTGATCCGTGCAAGTCTTT+TGG	+	Chr7:84943234-84943253	MsG0780040966.01.T01:CDS	45.0%

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	84943165	84943359	84943165	ID=MsG0780040966.01;Name=MsG0780040966.01
Chr7	mRNA	84943165	84943359	84943165	ID=MsG0780040966.01.T01;Parent=MsG0780040966.01;Name=MsG0780040966.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|0\|1\|0\|64
Chr7	exon	84943165	84943359	84943165	ID=MsG0780040966.01.T01:exon:40932;Parent=MsG0780040966.01.T01
Chr7	CDS	84943165	84943359	84943165	ID=MsG0780040966.01.T01:cds;Parent=MsG0780040966.01.T01

Gene Sequence	>MsG0780040966.01.T01 ATGGCAGTAAAGGAAATTAGCAGCACAAGGAACCAAAATAGTACTCATCAGCATCAAGAACAAGAAGGGTGTGATCCGTGCAAGTCTTTTGGCCAAAAGTGTAGTCACTTGGTCAAGAAACAGCGTGCAAAATTCTACATTCTTCGCCGTTGCATCGCCATGCTTTTGTGTCATCATGAGCGTTCTGAGCATTGA
Protein sequence	>MsG0780040966.01.T01 MAVKEISSTRNQNSTHQHQEQEGCDPCKSFGQKCSHLVKKQRAKFYILRRCIAMLLCHHERSEH*