AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036642.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036642.01.T01 MTR_7g016040 85.143 175 2 2 12 186 1 151 3.33e-102 304
MsG0780036642.01.T01 MTR_7g016040 89.189 74 1 1 189 255 259 332 5.61e-36 133
MsG0780036642.01.T01 MTR_7g016040 85.143 175 2 2 12 186 1 151 4.59e-100 302
MsG0780036642.01.T01 MTR_7g016040 89.189 74 1 1 189 255 259 332 4.72e-35 132
MsG0780036642.01.T01 MTR_7g016040 100.000 55 0 0 257 311 409 463 6.38e-31 121
MsG0780036642.01.T01 MTR_6g015910 61.991 221 57 2 12 232 1 194 1.13e-88 273
MsG0780036642.01.T01 MTR_6g015910 74.324 74 12 1 189 255 260 333 6.89e-29 115
MsG0780036642.01.T01 MTR_6g015910 87.037 54 7 0 257 310 410 463 5.78e-25 104
MsG0780036642.01.T01 MTR_3g007320 68.617 188 34 2 12 198 1 164 2.89e-86 266
MsG0780036642.01.T01 MTR_3g007320 71.622 74 14 1 189 255 260 333 8.73e-28 112
MsG0780036642.01.T01 MTR_3g007320 83.929 56 9 0 256 311 409 464 2.13e-25 105
MsG0780036642.01.T01 MTR_3g070380 34.545 165 86 3 36 200 21 163 6.40e-21 93.2
MsG0780036642.01.T01 MTR_7g033040 32.719 217 114 5 18 223 8 203 8.70e-21 92.8
MsG0780036642.01.T01 MTR_5g082520 34.783 161 83 3 40 200 24 162 2.68e-20 91.3
MsG0780036642.01.T01 MTR_1g037580 29.444 180 98 3 1 177 1 154 1.04e-18 86.7
MsG0780036642.01.T01 MTR_8g016180 29.605 152 78 2 40 186 33 160 1.05e-18 86.3
MsG0780036642.01.T01 MTR_8g016180 29.605 152 78 2 40 186 33 160 1.89e-18 85.9
MsG0780036642.01.T01 MTR_5g020020 35.862 145 74 2 44 188 36 161 4.73e-18 84.7
MsG0780036642.01.T01 MTR_5g021220 26.347 167 101 4 12 177 5 150 7.14e-18 84.3
MsG0780036642.01.T01 MTR_5g025610 35.971 139 64 3 44 182 35 148 1.38e-17 82.8
MsG0780036642.01.T01 MTR_8g077810 32.335 167 91 3 17 183 9 153 1.55e-17 83.2
MsG0780036642.01.T01 MTR_5g025610 35.971 139 64 3 44 182 35 148 2.16e-17 82.4
MsG0780036642.01.T01 MTR_5g025610 35.971 139 64 3 44 182 35 148 4.06e-17 82.0
MsG0780036642.01.T01 MTR_5g010750 27.976 168 94 5 14 177 1 145 9.51e-15 74.7
MsG0780036642.01.T01 MTR_8g076510 32.500 120 62 2 45 164 40 140 1.09e-14 74.7
MsG0780036642.01.T01 MTR_5g010750 27.976 168 94 5 14 177 1 145 1.10e-14 74.7
MsG0780036642.01.T01 MTR_4g086130 30.216 139 73 2 44 182 35 149 1.13e-14 74.7
MsG0780036642.01.T01 MTR_1g019410 29.070 172 97 4 11 182 3 149 1.51e-14 74.3
MsG0780036642.01.T01 MTR_3g467140 28.492 179 103 4 14 192 8 161 5.82e-14 72.4
MsG0780036642.01.T01 MTR_4g086040 29.412 153 83 3 31 182 24 152 5.98e-13 69.3
MsG0780036642.01.T01 MTR_5g091760 28.659 164 92 5 30 187 18 162 2.01e-12 67.8
MsG0780036642.01.T01 MTR_8g072260 32.374 139 69 4 44 182 37 150 2.08e-12 67.8
MsG0780036642.01.T01 MTR_5g014240 30.625 160 88 6 14 169 11 151 1.26e-11 65.5
MsG0780036642.01.T01 MTR_5g014250 29.878 164 85 5 14 169 11 152 3.10e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036642.01.T01 AT3G30180 60.526 190 48 3 12 198 1 166 1.14e-74 237
MsG0780036642.01.T01 AT3G30180 60.274 73 22 1 190 255 262 334 2.09e-22 97.4
MsG0780036642.01.T01 AT3G30180 70.909 55 16 0 257 311 411 465 2.84e-20 91.3
MsG0780036642.01.T01 AT5G38970 55.789 190 57 3 12 198 1 166 1.04e-70 225
MsG0780036642.01.T01 AT5G38970 58.904 73 23 1 190 255 262 334 8.73e-21 92.4
MsG0780036642.01.T01 AT5G38970 55.789 190 57 3 12 198 1 166 9.59e-70 224
MsG0780036642.01.T01 AT5G38970 78.182 55 12 0 257 311 411 465 1.09e-23 100
MsG0780036642.01.T01 AT5G38970 58.904 73 23 1 190 255 262 334 1.10e-20 92.4
MsG0780036642.01.T01 AT5G38970 65.882 85 27 1 116 198 1 85 1.09e-31 122
MsG0780036642.01.T01 AT5G38970 78.182 55 12 0 257 311 330 384 4.74e-24 101
MsG0780036642.01.T01 AT5G38970 58.904 73 23 1 190 255 181 253 7.78e-21 92.0
MsG0780036642.01.T01 AT5G38970 65.882 85 27 1 116 198 1 85 1.09e-31 122
MsG0780036642.01.T01 AT5G38970 78.182 55 12 0 257 311 330 384 4.74e-24 101
MsG0780036642.01.T01 AT5G38970 58.904 73 23 1 190 255 181 253 7.78e-21 92.0
MsG0780036642.01.T01 AT3G13730 32.414 145 71 2 45 185 52 173 1.98e-19 88.6
MsG0780036642.01.T01 AT3G13730 32.414 145 71 2 45 185 52 173 2.64e-19 88.6
MsG0780036642.01.T01 AT5G05690 33.557 149 77 3 43 191 30 156 7.15e-18 84.0
MsG0780036642.01.T01 AT5G05690 33.557 149 77 3 43 191 30 156 1.22e-17 83.6
MsG0780036642.01.T01 AT4G19230 30.000 170 95 2 13 182 5 150 4.51e-17 82.0
MsG0780036642.01.T01 AT4G19230 30.000 170 95 2 13 182 5 150 5.02e-17 81.6
MsG0780036642.01.T01 AT3G50660 34.483 145 76 2 38 182 33 158 4.11e-16 79.0
MsG0780036642.01.T01 AT1G55940 34.286 140 73 3 44 182 45 166 4.67e-16 79.0
MsG0780036642.01.T01 AT1G55940 34.286 140 73 3 44 182 45 166 4.67e-16 79.0
MsG0780036642.01.T01 AT3G50660 34.483 145 76 2 38 182 33 158 8.35e-16 78.2
MsG0780036642.01.T01 AT4G36380 32.479 117 60 2 44 160 69 166 2.98e-15 76.3
MsG0780036642.01.T01 AT3G19270 32.168 143 73 2 41 183 31 149 4.49e-15 75.9
MsG0780036642.01.T01 AT5G14400 35.772 123 60 2 49 171 1 104 5.14e-15 75.1
MsG0780036642.01.T01 AT5G45340 31.469 143 74 2 44 186 36 154 5.71e-15 75.5
MsG0780036642.01.T01 AT3G19270 32.394 142 72 2 41 182 31 148 6.85e-15 75.5
MsG0780036642.01.T01 AT4G36380 32.479 117 60 2 44 160 69 166 7.94e-15 75.1
MsG0780036642.01.T01 AT5G45340 31.469 143 74 2 44 186 36 154 1.02e-14 74.7
MsG0780036642.01.T01 AT5G14400 35.772 123 60 2 49 171 1 104 1.97e-14 73.6
MsG0780036642.01.T01 AT5G14400 35.772 123 60 2 49 171 1 104 2.51e-14 73.6
MsG0780036642.01.T01 AT1G12740 30.201 149 89 4 34 182 22 155 8.67e-14 72.0
MsG0780036642.01.T01 AT1G12740 29.605 152 80 6 34 182 22 149 1.48e-13 70.9
MsG0780036642.01.T01 AT2G29090 30.769 143 73 2 32 174 40 156 2.45e-13 70.1
MsG0780036642.01.T01 AT1G12740 29.530 149 84 5 34 182 22 149 2.52e-13 70.5
MsG0780036642.01.T01 AT1G12740 29.530 149 84 5 34 182 22 149 2.71e-13 70.5
MsG0780036642.01.T01 AT2G29090 30.769 143 73 2 32 174 40 156 4.53e-13 69.7
MsG0780036642.01.T01 AT2G29090 30.769 143 73 2 32 174 40 156 4.53e-13 69.7
MsG0780036642.01.T01 AT3G44970 28.966 145 80 2 44 186 35 158 5.05e-13 69.3
MsG0780036642.01.T01 AT3G44970 28.966 145 80 2 44 186 35 158 6.74e-13 69.3
MsG0780036642.01.T01 AT1G73340 25.871 201 115 5 5 198 7 180 6.96e-13 69.3

Find 54 sgRNAs with CRISPR-Local

Find 216 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTATCTTCATTGCAATTCT+AGG 0.194704 7:-11221605 MsG0780036642.01.T01:CDS
ATCATTACAATTATGTATTC+TGG 0.218862 7:-11219673 MsG0780036642.01.T01:CDS
GCTATTCCCAACTCCTTTCC+TGG 0.258735 7:+11218184 None:intergenic
CTCATTTCATCAAGAACTTT+AGG 0.263769 7:+11219595 None:intergenic
TTGCAATCAATAGGATCTTC+TGG 0.335472 7:+11219440 None:intergenic
TGTAACATTGCAGCTGTTCA+TGG 0.357969 7:-11220654 MsG0780036642.01.T01:CDS
TTCCACCATCATCATTTGAT+TGG 0.372037 7:-11221370 MsG0780036642.01.T01:intron
GAAGCAAAAGGGTTTGTTCC+AGG 0.375785 7:-11220711 MsG0780036642.01.T01:CDS
GGATCCATTGATACAATTGT+AGG 0.391622 7:+11220762 None:intergenic
CAATCCATGTTAGATATCTT+AGG 0.397681 7:-11220681 MsG0780036642.01.T01:CDS
AATATGTATCTATTTAGTTC+TGG 0.436208 7:+11220741 None:intergenic
ATGTCCTACAATTGTATCAA+TGG 0.444079 7:-11220766 MsG0780036642.01.T01:CDS
ACTACTTTGTAACTAGATAC+AGG 0.444899 7:-11218141 MsG0780036642.01.T01:intron
AGAGTTTAAGCAAGCATCAA+TGG 0.445248 7:-11221627 MsG0780036642.01.T01:CDS
TTGAGATCATTGCAATCAAT+AGG 0.446297 7:+11219431 None:intergenic
AACATGGATTGAGGGTATCC+TGG 0.456330 7:+11220693 None:intergenic
CCTAGAGTTGTGGCACCAAA+TGG 0.457326 7:-11217970 MsG0780036642.01.T01:CDS
ACTCTTATGTGCAGTCCATT+TGG 0.463247 7:+11217955 None:intergenic
CCATTTGGTGCCACAACTCT+AGG 0.464366 7:+11217970 None:intergenic
CTAAAGTTCTTGATGAAATG+AGG 0.466378 7:-11219594 MsG0780036642.01.T01:CDS
TGTCCACTCTCATATGCAAA+TGG 0.471389 7:-11221729 None:intergenic
GGTTTGCCACAAGGAACAAT+GGG 0.481437 7:-11221515 MsG0780036642.01.T01:CDS
AAGATATCTAACATGGATTG+AGG 0.489832 7:+11220684 None:intergenic
TATTGATGAATGAAGCAAAA+GGG 0.505415 7:-11220722 MsG0780036642.01.T01:CDS
CAATGTCCAGGAAAGGAGTT+GGG 0.512088 7:-11218190 MsG0780036642.01.T01:CDS
TACAAAGTAGTGCAAGAAAG+TGG 0.516898 7:+11218153 None:intergenic
AGCTGATTTCTGATTAAAGT+GGG 0.521048 7:+11220585 None:intergenic
GAGGTAAGATACAGAAGGAA+AGG 0.524204 7:-11221536 MsG0780036642.01.T01:CDS
AGTAACCAATCAAATGATGA+TGG 0.525897 7:+11221365 None:intergenic
AGATATCTAACATGGATTGA+GGG 0.530731 7:+11220685 None:intergenic
AAGCTGATTTCTGATTAAAG+TGG 0.538539 7:+11220584 None:intergenic
TATTTCAACTACATCAATGA+TGG 0.545998 7:-11219641 MsG0780036642.01.T01:CDS
CCCTCTCATGTACTTGTGAG+TGG 0.547456 7:+11220629 None:intergenic
ACAATGTCCAGGAAAGGAGT+TGG 0.550547 7:-11218191 MsG0780036642.01.T01:CDS
AATGAAATTTCCTAGAGTTG+TGG 0.552844 7:-11217980 MsG0780036642.01.T01:CDS
ATATTGATGAATGAAGCAAA+AGG 0.557628 7:-11220723 MsG0780036642.01.T01:CDS
AGGTTTGCCACAAGGAACAA+TGG 0.562623 7:-11221516 MsG0780036642.01.T01:CDS
CATTGCAGATGGGAAGAAGT+AGG 0.566871 7:-11218015 MsG0780036642.01.T01:intron
TAAAGTTCTTGATGAAATGA+GGG 0.569092 7:-11219593 MsG0780036642.01.T01:intron
CACTAGACAATGTCCAGGAA+AGG 0.600963 7:-11218197 MsG0780036642.01.T01:CDS
GGTGGCACTAGACAATGTCC+AGG 0.602165 7:-11218202 MsG0780036642.01.T01:CDS
GTCCATGAGGTTTACTCGCG+CGG 0.608522 7:-11219408 MsG0780036642.01.T01:CDS
GGCCACCCCATTGTTCCTTG+TGG 0.609487 7:+11221509 None:intergenic
AACCAATCAAATGATGATGG+TGG 0.611180 7:+11221368 None:intergenic
ACAACTGAGTTTCTTAAACA+AGG 0.614414 7:-11221473 MsG0780036642.01.T01:CDS
TCCACTCACAAGTACATGAG+AGG 0.625908 7:-11220630 MsG0780036642.01.T01:CDS
AGAAGGAAAGGTTTGCCACA+AGG 0.636336 7:-11221524 MsG0780036642.01.T01:CDS
TACCGCGCGAGTAAACCTCA+TGG 0.638892 7:+11219406 None:intergenic
TGCAGATGGGAAGAAGTAGG+AGG 0.640915 7:-11218012 MsG0780036642.01.T01:intron
GGAATGAGGTAAGATACAGA+AGG 0.641637 7:-11221541 MsG0780036642.01.T01:CDS
TGCCACAAGGAACAATGGGG+TGG 0.650564 7:-11221511 MsG0780036642.01.T01:CDS
CCACTCACAAGTACATGAGA+GGG 0.670298 7:-11220629 MsG0780036642.01.T01:CDS
GCAATGATCTCAAGTCCATG+AGG 0.698672 7:-11219421 MsG0780036642.01.T01:CDS
GTTTGCCACAAGGAACAATG+GGG 0.780515 7:-11221514 MsG0780036642.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTATTTCCATATTTT+TGG - Chr7:11221082-11221101 MsG0780036642.01.T01:intron 10.0%
!!! TTATTTATTTCCATATTTTT+GGG - Chr7:11221083-11221102 MsG0780036642.01.T01:intron 10.0%
!! ATTTATGTAATACATTCAAA+AGG + Chr7:11218516-11218535 None:intergenic 15.0%
!! GAAAATTTAGTCATATAAAT+AGG + Chr7:11221559-11221578 None:intergenic 15.0%
!! TAAAACTAAAAGTTACATAT+TGG + Chr7:11219649-11219668 None:intergenic 15.0%
!! TTAAAGTAATCTAAGTAATT+TGG + Chr7:11220843-11220862 None:intergenic 15.0%
!! TTTATGTAATACATTCAAAA+GGG + Chr7:11218515-11218534 None:intergenic 15.0%
!!! ATATTTGTAAATGATTTTTC+AGG - Chr7:11221195-11221214 MsG0780036642.01.T01:intron 15.0%
!!! CAAATATTTTTTCCAAATTT+CGG - Chr7:11218602-11218621 MsG0780036642.01.T01:intron 15.0%
!! ATCATTACAATTATGTATTC+TGG - Chr7:11219985-11220004 MsG0780036642.01.T01:intron 20.0%
!! GAATATATTAATTGCATTAG+AGG - Chr7:11221593-11221612 MsG0780036642.01.T01:CDS 20.0%
!! GTATTATTAACATTTGAGTA+AGG - Chr7:11219852-11219871 MsG0780036642.01.T01:intron 20.0%
!! TAGATTACTTTAATATGCTA+TGG - Chr7:11220850-11220869 MsG0780036642.01.T01:intron 20.0%
!! TATAAAGAAAATGAAACCAA+TGG + Chr7:11218409-11218428 None:intergenic 20.0%
!! TATGAGAAACTAATGTTAAT+TGG - Chr7:11218691-11218710 MsG0780036642.01.T01:intron 20.0%
!! TCTTATGTATTTATGTTGAT+GGG - Chr7:11220610-11220629 MsG0780036642.01.T01:CDS 20.0%
!! TGAATGTATTACATAAATCA+TGG - Chr7:11218518-11218537 MsG0780036642.01.T01:intron 20.0%
!! TTTACATAGTGAAATGAAAA+GGG + Chr7:11220792-11220811 None:intergenic 20.0%
!!! AATATGTATCTATTTAGTTC+TGG + Chr7:11218920-11218939 None:intergenic 20.0%
!!! ATCTTTATTTGAACAAAACA+TGG + Chr7:11219739-11219758 None:intergenic 20.0%
!!! CAAATGTTTTTTTTAACAGA+TGG - Chr7:11219369-11219388 MsG0780036642.01.T01:intron 20.0%
!!! GAAAATGTTTTTGACTTTTT+TGG - Chr7:11220638-11220657 MsG0780036642.01.T01:CDS 20.0%
!!! TATATTTGATTGATTCTTGT+AGG - Chr7:11219820-11219839 MsG0780036642.01.T01:intron 20.0%
!!! TCATTGTAACTTTTTCTTTT+TGG - Chr7:11218815-11218834 MsG0780036642.01.T01:intron 20.0%
!!! TTCAAGTTGTTTGTTAATTA+TGG + Chr7:11221389-11221408 None:intergenic 20.0%
!!! TTTTACATAGTGAAATGAAA+AGG + Chr7:11220793-11220812 None:intergenic 20.0%
!!! TTTTTCAAATCTCACATATT+AGG - Chr7:11218869-11218888 MsG0780036642.01.T01:intron 20.0%
! AAATGAGTTAAACTAAGTGT+GGG - Chr7:11218744-11218763 MsG0780036642.01.T01:intron 25.0%
! AAGTTACAATGATAACCAAT+AGG + Chr7:11218807-11218826 None:intergenic 25.0%
! ACTAATAATACTAGCATATG+TGG - Chr7:11221050-11221069 MsG0780036642.01.T01:intron 25.0%
! AGTTACAATGATAACCAATA+GGG + Chr7:11218806-11218825 None:intergenic 25.0%
! ATATTGATGAATGAAGCAAA+AGG - Chr7:11218935-11218954 MsG0780036642.01.T01:intron 25.0%
! ATGAACTTAAAGTTACACAT+TGG + Chr7:11219692-11219711 None:intergenic 25.0%
! CATACACTTATACTTTCAAT+AGG + Chr7:11220955-11220974 None:intergenic 25.0%
! CTCTTATGTATTTATGTTGA+TGG - Chr7:11220609-11220628 MsG0780036642.01.T01:CDS 25.0%
! TAAAGTTCTTGATGAAATGA+GGG - Chr7:11220065-11220084 MsG0780036642.01.T01:intron 25.0%
! TAGTGAGTCTAACAAAATTA+CGG - Chr7:11219216-11219235 MsG0780036642.01.T01:intron 25.0%
! TATGTTCATGTTTCTTGTTA+GGG - Chr7:11218347-11218366 MsG0780036642.01.T01:intron 25.0%
! TATTGATGAATGAAGCAAAA+GGG - Chr7:11218936-11218955 MsG0780036642.01.T01:intron 25.0%
! TATTTCAACTACATCAATGA+TGG - Chr7:11220017-11220036 MsG0780036642.01.T01:intron 25.0%
! TCACATATATTACCGAAATT+TGG + Chr7:11218617-11218636 None:intergenic 25.0%
! TTTGTTCAAATAAAGATGCA+TGG - Chr7:11219742-11219761 MsG0780036642.01.T01:intron 25.0%
!! AGATTAGCTACAATAGTTAA+TGG - Chr7:11220512-11220531 MsG0780036642.01.T01:intron 25.0%
!! ATTGGAGCTTCTAAAAATTA+CGG + Chr7:11219631-11219650 None:intergenic 25.0%
!! GATGAATGAATTTCTTTTTC+TGG + Chr7:11220711-11220730 None:intergenic 25.0%
!! TTATTCATTCATGTACCTTT+TGG - Chr7:11218773-11218792 MsG0780036642.01.T01:intron 25.0%
!! TTTTCCTAAGATATCTAACA+TGG + Chr7:11218984-11219003 None:intergenic 25.0%
!!! AAATGATTTTTCAGGCTATT+TGG - Chr7:11221203-11221222 MsG0780036642.01.T01:intron 25.0%
!!! CTTTTTTGATACTGAAAAAG+TGG + Chr7:11220674-11220693 None:intergenic 25.0%
!!! GTTTTTAAAGACTATTCCAT+TGG - Chr7:11218390-11218409 MsG0780036642.01.T01:intron 25.0%
!!! TAAATGTCATTTTGGACTAA+CGG + Chr7:11218654-11218673 None:intergenic 25.0%
!!! TCATGATGTAAATGTCATTT+TGG + Chr7:11218662-11218681 None:intergenic 25.0%
AAAGAAATTCATTCATCCCT+AGG - Chr7:11220714-11220733 MsG0780036642.01.T01:CDS 30.0%
AACAAACAACTTGAAATGCA+GGG - Chr7:11221394-11221413 MsG0780036642.01.T01:CDS 30.0%
AACATTGACACCCAAAAATA+TGG + Chr7:11221096-11221115 None:intergenic 30.0%
AAGAGCTAGAGAAATGAAAT+AGG + Chr7:11220594-11220613 None:intergenic 30.0%
AATGAAATTTCCTAGAGTTG+TGG - Chr7:11221678-11221697 MsG0780036642.01.T01:intron 30.0%
ACAACTGAGTTTCTTAAACA+AGG - Chr7:11218185-11218204 MsG0780036642.01.T01:CDS 30.0%
ACATAGTCACTTCTTGATAT+TGG - Chr7:11221432-11221451 MsG0780036642.01.T01:CDS 30.0%
ACGTTAATTAGAAAAGACGA+AGG + Chr7:11219551-11219570 None:intergenic 30.0%
ACTACTTTGTAACTAGATAC+AGG - Chr7:11221517-11221536 MsG0780036642.01.T01:CDS 30.0%
ACTCATGACATGGAATTAAA+TGG - Chr7:11220552-11220571 MsG0780036642.01.T01:CDS 30.0%
ACTTTAATATGCTATGGTCA+TGG - Chr7:11220856-11220875 MsG0780036642.01.T01:intron 30.0%
AGAAAAAACAACTCATGACA+TGG - Chr7:11220542-11220561 MsG0780036642.01.T01:intron 30.0%
AGGTTGAAAAATTAGGTAGT+GGG - Chr7:11220884-11220903 MsG0780036642.01.T01:intron 30.0%
AGTAACCAATCAAATGATGA+TGG + Chr7:11218296-11218315 None:intergenic 30.0%
AGTGAGTCTAACAAAATTAC+GGG - Chr7:11219217-11219236 MsG0780036642.01.T01:intron 30.0%
AGTGGATCATGATAAAGAAT+TGG + Chr7:11221279-11221298 None:intergenic 30.0%
ATCCACTAACATTTAATCCA+TGG - Chr7:11221292-11221311 MsG0780036642.01.T01:intron 30.0%
ATGACATGGAATTAAATGGT+GGG - Chr7:11220556-11220575 MsG0780036642.01.T01:CDS 30.0%
ATGTCCTACAATTGTATCAA+TGG - Chr7:11218892-11218911 MsG0780036642.01.T01:intron 30.0%
ATGTTCATGTTTCTTGTTAG+GGG - Chr7:11218348-11218367 MsG0780036642.01.T01:intron 30.0%
ATTGAATGTTACATTGCAGA+TGG - Chr7:11221632-11221651 MsG0780036642.01.T01:CDS 30.0%
CAAATGAGTTAAACTAAGTG+TGG - Chr7:11218743-11218762 MsG0780036642.01.T01:intron 30.0%
CAATAGGGTAAATTACCAAA+AGG + Chr7:11218791-11218810 None:intergenic 30.0%
CAATCCATGTTAGATATCTT+AGG - Chr7:11218977-11218996 MsG0780036642.01.T01:intron 30.0%
CAGCAACATGAACAAATAAT+TGG + Chr7:11219770-11219789 None:intergenic 30.0%
CATTCAAGACAAAACTAAAG+AGG - Chr7:11219158-11219177 MsG0780036642.01.T01:intron 30.0%
CCTAACTTCATGAAAAATCA+AGG - Chr7:11218209-11218228 MsG0780036642.01.T01:intron 30.0%
CGTTAATTAGAAAAGACGAA+GGG + Chr7:11219550-11219569 None:intergenic 30.0%
CTAAAGTTCTTGATGAAATG+AGG - Chr7:11220064-11220083 MsG0780036642.01.T01:intron 30.0%
CTAACAAGAAACATGAACAT+AGG + Chr7:11218348-11218367 None:intergenic 30.0%
CTATCGAAAATAGAAGTTCA+CGG + Chr7:11220403-11220422 None:intergenic 30.0%
CTATGTTCATGTTTCTTGTT+AGG - Chr7:11218346-11218365 MsG0780036642.01.T01:intron 30.0%
CTCATTTCATCAAGAACTTT+AGG + Chr7:11220066-11220085 None:intergenic 30.0%
CTGCAAAAGACACAATTTAA+TGG + Chr7:11220474-11220493 None:intergenic 30.0%
GCTTATATATAAGCACTTTG+AGG + Chr7:11217957-11217976 None:intergenic 30.0%
GTGGATCATGATAAAGAATT+GGG + Chr7:11221278-11221297 None:intergenic 30.0%
TAACAAACAACTTGAAATGC+AGG - Chr7:11221393-11221412 MsG0780036642.01.T01:CDS 30.0%
TAACATTTAATCCATGGAGA+TGG - Chr7:11221298-11221317 MsG0780036642.01.T01:intron 30.0%
TGAACAATTACACAATCCTA+GGG + Chr7:11220733-11220752 None:intergenic 30.0%
TGCTTATATATAAGCACATG+TGG - Chr7:11217962-11217981 MsG0780036642.01.T01:CDS 30.0%
TGTCAATGTTCATACTTCAT+AGG - Chr7:11221106-11221125 MsG0780036642.01.T01:intron 30.0%
TTAAAGAACTCTGTCATGAA+AGG + Chr7:11219451-11219470 None:intergenic 30.0%
TTCATGAAAAATCAAGGTCA+AGG - Chr7:11218215-11218234 MsG0780036642.01.T01:intron 30.0%
TTGAAGCTTCAACAAAATCA+CGG - Chr7:11219272-11219291 MsG0780036642.01.T01:intron 30.0%
TTGAATGTTACATTGCAGAT+GGG - Chr7:11221633-11221652 MsG0780036642.01.T01:CDS 30.0%
TTGAGATCATTGCAATCAAT+AGG + Chr7:11220230-11220249 None:intergenic 30.0%
! AAGATATCTAACATGGATTG+AGG + Chr7:11218977-11218996 None:intergenic 30.0%
! AAGCTGATTTCTGATTAAAG+TGG + Chr7:11219077-11219096 None:intergenic 30.0%
! AGATATCTAACATGGATTGA+GGG + Chr7:11218976-11218995 None:intergenic 30.0%
! AGCTGATTTCTGATTAAAGT+GGG + Chr7:11219076-11219095 None:intergenic 30.0%
! ATACTTTCAATAGGAAGTGT+CGG + Chr7:11220946-11220965 None:intergenic 30.0%
! CATCATTTGATTGGTTACTT+TGG - Chr7:11218297-11218316 MsG0780036642.01.T01:intron 30.0%
! CATTAAATTGTGTCTTTTGC+AGG - Chr7:11220472-11220491 MsG0780036642.01.T01:intron 30.0%
! CCTTGATTTTTCATGAAGTT+AGG + Chr7:11218212-11218231 None:intergenic 30.0%
! CTCATGAACTCATCAATTTT+AGG + Chr7:11219103-11219122 None:intergenic 30.0%
! GTATAACTTTTGTGTATGAC+AGG - Chr7:11218837-11218856 MsG0780036642.01.T01:intron 30.0%
! GTGTATGACAATGATTTTGA+AGG - Chr7:11220992-11221011 MsG0780036642.01.T01:intron 30.0%
! TAGGTTGAAAAATTAGGTAG+TGG - Chr7:11220883-11220902 MsG0780036642.01.T01:intron 30.0%
!! CATTGGAGCTTCTAAAATTA+CGG + Chr7:11219675-11219694 None:intergenic 30.0%
!! CTACCTAATTTTTCAACCTA+TGG + Chr7:11220883-11220902 None:intergenic 30.0%
!! CTTTTGGTAATTTACCCTAT+TGG - Chr7:11218789-11218808 MsG0780036642.01.T01:intron 30.0%
!! GAGTTCTTTAAGCTTGTTTT+AGG - Chr7:11219460-11219479 MsG0780036642.01.T01:intron 30.0%
!! GGATTTTATTGAAGCTCTAA+AGG - Chr7:11218569-11218588 MsG0780036642.01.T01:intron 30.0%
AACTATTGTAGCTAATCTCG+AGG + Chr7:11220510-11220529 None:intergenic 35.0%
AGAGTTTAAGCAAGCATCAA+TGG - Chr7:11218031-11218050 MsG0780036642.01.T01:intron 35.0%
ATAAATCATAGTGCCATGCA+AGG + Chr7:11218477-11218496 None:intergenic 35.0%
ATCTCATTGATGCTATCAAG+AGG - Chr7:11221159-11221178 MsG0780036642.01.T01:intron 35.0%
ATGAGACTCATGTAAGTGAT+TGG - Chr7:11219118-11219137 MsG0780036642.01.T01:intron 35.0%
ATGCTATCAAGAGGGTTAAT+TGG - Chr7:11221168-11221187 MsG0780036642.01.T01:intron 35.0%
ATGCTTAGTTGTTTGATGAG+AGG - Chr7:11219916-11219935 MsG0780036642.01.T01:intron 35.0%
CATGACATGGAATTAAATGG+TGG - Chr7:11220555-11220574 MsG0780036642.01.T01:CDS 35.0%
GCTATCTTCATTGCAATTCT+AGG - Chr7:11218053-11218072 MsG0780036642.01.T01:intron 35.0%
GGATCCATTGATACAATTGT+AGG + Chr7:11218899-11218918 None:intergenic 35.0%
GGATTGTGTAATTGTTCACA+TGG - Chr7:11220735-11220754 MsG0780036642.01.T01:CDS 35.0%
GTGAACAATTACACAATCCT+AGG + Chr7:11220734-11220753 None:intergenic 35.0%
GTGAGTCTAACAAAATTACG+GGG - Chr7:11219218-11219237 MsG0780036642.01.T01:intron 35.0%
GTGTATGACAATGACATTGA+AGG - Chr7:11220968-11220987 MsG0780036642.01.T01:intron 35.0%
TAAATCATAGTGCCATGCAA+GGG + Chr7:11218476-11218495 None:intergenic 35.0%
TACAAAGTAGTGCAAGAAAG+TGG + Chr7:11221508-11221527 None:intergenic 35.0%
TAGTCACTTCTTGATATTGG+AGG - Chr7:11221435-11221454 MsG0780036642.01.T01:CDS 35.0%
TCTCATTGATGCTATCAAGA+GGG - Chr7:11221160-11221179 MsG0780036642.01.T01:intron 35.0%
TGAAATGAAAAGGGTCTAGT+TGG + Chr7:11220783-11220802 None:intergenic 35.0%
TGAGACTCATGTAAGTGATT+GGG - Chr7:11219119-11219138 MsG0780036642.01.T01:intron 35.0%
TGCTTAGTTGTTTGATGAGA+GGG - Chr7:11219917-11219936 MsG0780036642.01.T01:intron 35.0%
TTCCACCATCATCATTTGAT+TGG - Chr7:11218288-11218307 MsG0780036642.01.T01:intron 35.0%
TTGCAATCAATAGGATCTTC+TGG + Chr7:11220221-11220240 None:intergenic 35.0%
! ACTTTTGTGTATGACAGGTA+TGG - Chr7:11218842-11218861 MsG0780036642.01.T01:intron 35.0%
! ATGAAATGAGGGTATGTATG+TGG - Chr7:11220076-11220095 MsG0780036642.01.T01:intron 35.0%
! CCATTGAATGTCTAAAATCG+CGG + Chr7:11219323-11219342 None:intergenic 35.0%
! CTCCATGGATTAAATGTTAG+TGG + Chr7:11221297-11221316 None:intergenic 35.0%
! CTTTTGTGTATGACAGGTAT+GGG - Chr7:11218843-11218862 MsG0780036642.01.T01:intron 35.0%
! GGGAGTGGTTTTTATGAAAT+TGG - Chr7:11218368-11218387 MsG0780036642.01.T01:intron 35.0%
! GGTCCATAGGTTGAAAAATT+AGG - Chr7:11220877-11220896 MsG0780036642.01.T01:intron 35.0%
! TAACGTCTAAGACATTGTCT+TGG + Chr7:11220368-11220387 None:intergenic 35.0%
! TGAGTAAGGTACTTGAAGAA+AGG - Chr7:11219866-11219885 MsG0780036642.01.T01:intron 35.0%
! TGGAAAGATGCATCTTTTTC+TGG + Chr7:11220823-11220842 None:intergenic 35.0%
! TTGATTGATTCTTGTAGGCA+AGG - Chr7:11219825-11219844 MsG0780036642.01.T01:intron 35.0%
! TTTGAAGCAAATTGCTGGTA+TGG - Chr7:11219405-11219424 MsG0780036642.01.T01:CDS 35.0%
!! AACCAATCAAATGATGATGG+TGG + Chr7:11218293-11218312 None:intergenic 35.0%
!! CTAATTTTAGAGAGCGACAT+TGG + Chr7:11220317-11220336 None:intergenic 35.0%
!! TCAGTTGTTTCTCCAAAAAC+AGG + Chr7:11218173-11218192 None:intergenic 35.0%
!! TCATCTTTGAAGCAAATTGC+TGG - Chr7:11219400-11219419 MsG0780036642.01.T01:intron 35.0%
AACCAAATCAAGACGACACT+GGG - Chr7:11218548-11218567 MsG0780036642.01.T01:intron 40.0%
ACATATATCCTCCACCCTTT+AGG + Chr7:11221231-11221250 None:intergenic 40.0%
ACTCTTATGTGCAGTCCATT+TGG + Chr7:11221706-11221725 None:intergenic 40.0%
ATTTAATCCATGGAGATGGC+TGG - Chr7:11221302-11221321 MsG0780036642.01.T01:intron 40.0%
GAGGTAAGATACAGAAGGAA+AGG - Chr7:11218122-11218141 MsG0780036642.01.T01:intron 40.0%
GGAATGAGGTAAGATACAGA+AGG - Chr7:11218117-11218136 MsG0780036642.01.T01:intron 40.0%
TAACCAAATCAAGACGACAC+TGG - Chr7:11218547-11218566 MsG0780036642.01.T01:intron 40.0%
TAAGCGTGTGTGTTAGAGAT+CGG - Chr7:11219572-11219591 MsG0780036642.01.T01:intron 40.0%
TCACTTCTTGATATTGGAGG+TGG - Chr7:11221438-11221457 MsG0780036642.01.T01:CDS 40.0%
TGGTAAAACTCTATCTACCG+TGG + Chr7:11219608-11219627 None:intergenic 40.0%
TGTAACATTGCAGCTGTTCA+TGG - Chr7:11219004-11219023 MsG0780036642.01.T01:intron 40.0%
TTGTGCCCGGAAGATTAATA+GGG + Chr7:11219498-11219517 None:intergenic 40.0%
TTTGATCAACTTCCCTTGCA+TGG - Chr7:11218461-11218480 MsG0780036642.01.T01:intron 40.0%
TTTGTGCCCGGAAGATTAAT+AGG + Chr7:11219499-11219518 None:intergenic 40.0%
! AAACTATCGTCGTGGATTAC+AGG - Chr7:11219516-11219535 MsG0780036642.01.T01:intron 40.0%
! CAGGCTATTTGGTTCCTAAA+GGG - Chr7:11221214-11221233 MsG0780036642.01.T01:intron 40.0%
! CCGCGATTTTAGACATTCAA+TGG - Chr7:11219320-11219339 MsG0780036642.01.T01:intron 40.0%
! GGAGCTTCTAAAAATTACGG+TGG + Chr7:11219628-11219647 None:intergenic 40.0%
! TCAGGCTATTTGGTTCCTAA+AGG - Chr7:11221213-11221232 MsG0780036642.01.T01:intron 40.0%
!! ATTAGGTAGTGGGCATCTTA+AGG - Chr7:11220894-11220913 MsG0780036642.01.T01:intron 40.0%
!! TAGTTGGAGTGTTGAAAGAG+TGG + Chr7:11220767-11220786 None:intergenic 40.0%
!! TGGAGCTTCTAAAATTACGG+TGG + Chr7:11219672-11219691 None:intergenic 40.0%
!! TTTGCTCTGCTCTTTTGAAG+TGG - Chr7:11218096-11218115 MsG0780036642.01.T01:intron 40.0%
!!! TGCTCTTTTGAAGTGGAATG+AGG - Chr7:11218103-11218122 MsG0780036642.01.T01:intron 40.0%
ACAATGTCCAGGAAAGGAGT+TGG - Chr7:11221467-11221486 MsG0780036642.01.T01:CDS 45.0%
AGAAGGAAAGGTTTGCCACA+AGG - Chr7:11218134-11218153 MsG0780036642.01.T01:intron 45.0%
AGGTTTGCCACAAGGAACAA+TGG - Chr7:11218142-11218161 MsG0780036642.01.T01:CDS 45.0%
ATCCCAGTGTCGTCTTGATT+TGG + Chr7:11218553-11218572 None:intergenic 45.0%
ATGCTATGGTCATGGTCCAT+AGG - Chr7:11220864-11220883 MsG0780036642.01.T01:intron 45.0%
CAATGTCCAGGAAAGGAGTT+GGG - Chr7:11221468-11221487 MsG0780036642.01.T01:CDS 45.0%
CACTAGACAATGTCCAGGAA+AGG - Chr7:11221461-11221480 MsG0780036642.01.T01:CDS 45.0%
CATGTTTCTTGTTAGGGGAG+TGG - Chr7:11218353-11218372 MsG0780036642.01.T01:intron 45.0%
CATTGCAGATGGGAAGAAGT+AGG - Chr7:11221643-11221662 MsG0780036642.01.T01:intron 45.0%
CCACTCACAAGTACATGAGA+GGG - Chr7:11219029-11219048 MsG0780036642.01.T01:intron 45.0%
CTCCCTCCCTATTAATCTTC+CGG - Chr7:11219489-11219508 MsG0780036642.01.T01:intron 45.0%
GCAATGATCTCAAGTCCATG+AGG - Chr7:11220237-11220256 MsG0780036642.01.T01:intron 45.0%
GGTTTGCCACAAGGAACAAT+GGG - Chr7:11218143-11218162 MsG0780036642.01.T01:CDS 45.0%
GTTTGCCACAAGGAACAATG+GGG - Chr7:11218144-11218163 MsG0780036642.01.T01:CDS 45.0%
TCCACTCACAAGTACATGAG+AGG - Chr7:11219028-11219047 MsG0780036642.01.T01:intron 45.0%
TCCCTCCCTATTAATCTTCC+GGG - Chr7:11219490-11219509 MsG0780036642.01.T01:intron 45.0%
TTACTAACCAGCCATCTCCA+TGG + Chr7:11221312-11221331 None:intergenic 45.0%
! ATTTGGTTCCTAAAGGGTGG+AGG - Chr7:11221220-11221239 MsG0780036642.01.T01:intron 45.0%
! GAAGCAAAAGGGTTTGTTCC+AGG - Chr7:11218947-11218966 MsG0780036642.01.T01:intron 45.0%
! GCTATTTGGTTCCTAAAGGG+TGG - Chr7:11221217-11221236 MsG0780036642.01.T01:intron 45.0%
!! AACATGGATTGAGGGTATCC+TGG + Chr7:11218968-11218987 None:intergenic 45.0%
CCCTCTCATGTACTTGTGAG+TGG + Chr7:11219032-11219051 None:intergenic 50.0%
CCTAGAGTTGTGGCACCAAA+TGG - Chr7:11221688-11221707 MsG0780036642.01.T01:intron 50.0%
GCCCGGAAGATTAATAGGGA+GGG + Chr7:11219494-11219513 None:intergenic 50.0%
GCTATTCCCAACTCCTTTCC+TGG + Chr7:11221477-11221496 None:intergenic 50.0%
TGCAGATGGGAAGAAGTAGG+AGG - Chr7:11221646-11221665 MsG0780036642.01.T01:intron 50.0%
TGCCCGGAAGATTAATAGGG+AGG + Chr7:11219495-11219514 None:intergenic 50.0%
! ACAATGGGGTGGCCTGTTTT+TGG - Chr7:11218158-11218177 MsG0780036642.01.T01:CDS 50.0%
!! CCATTTGGTGCCACAACTCT+AGG + Chr7:11221691-11221710 None:intergenic 50.0%
AGATCGGTGGACAAGTGCCA+CGG - Chr7:11219588-11219607 MsG0780036642.01.T01:intron 55.0%
GCGTGTGTGTTAGAGATCGG+TGG - Chr7:11219575-11219594 MsG0780036642.01.T01:intron 55.0%
GGTGGCACTAGACAATGTCC+AGG - Chr7:11221456-11221475 MsG0780036642.01.T01:CDS 55.0%
GTCCATGAGGTTTACTCGCG+CGG - Chr7:11220250-11220269 MsG0780036642.01.T01:intron 55.0%
TACCGCGCGAGTAAACCTCA+TGG + Chr7:11220255-11220274 None:intergenic 55.0%
TGCCACAAGGAACAATGGGG+TGG - Chr7:11218147-11218166 MsG0780036642.01.T01:CDS 55.0%
! CCACGACGATAGTTTGTGCC+CGG + Chr7:11219511-11219530 None:intergenic 55.0%
CCGGGCACAAACTATCGTCG+TGG - Chr7:11219508-11219527 MsG0780036642.01.T01:intron 60.0%
GGCCACCCCATTGTTCCTTG+TGG + Chr7:11218152-11218171 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 11217942 11221738 11217942 ID=MsG0780036642.01;Name=MsG0780036642.01
Chr7 mRNA 11217942 11221738 11217942 ID=MsG0780036642.01.T01;Parent=MsG0780036642.01;Name=MsG0780036642.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0|0|0.85|0.33|0.14|7|0|311
Chr7 exon 11221730 11221738 11221730 ID=MsG0780036642.01.T01:exon:2139;Parent=MsG0780036642.01.T01
Chr7 exon 11221371 11221654 11221371 ID=MsG0780036642.01.T01:exon:2138;Parent=MsG0780036642.01.T01
Chr7 exon 11220552 11220821 11220552 ID=MsG0780036642.01.T01:exon:2137;Parent=MsG0780036642.01.T01
Chr7 exon 11219594 11219726 11219594 ID=MsG0780036642.01.T01:exon:2136;Parent=MsG0780036642.01.T01
Chr7 exon 11219405 11219474 11219405 ID=MsG0780036642.01.T01:exon:2135;Parent=MsG0780036642.01.T01
Chr7 exon 11218142 11218223 11218142 ID=MsG0780036642.01.T01:exon:2134;Parent=MsG0780036642.01.T01
Chr7 exon 11217942 11218029 11217942 ID=MsG0780036642.01.T01:exon:2133;Parent=MsG0780036642.01.T01
Chr7 CDS 11221730 11221738 11221730 ID=MsG0780036642.01.T01:cds;Parent=MsG0780036642.01.T01
Chr7 CDS 11221371 11221654 11221371 ID=MsG0780036642.01.T01:cds;Parent=MsG0780036642.01.T01
Chr7 CDS 11220552 11220821 11220552 ID=MsG0780036642.01.T01:cds;Parent=MsG0780036642.01.T01
Chr7 CDS 11219594 11219726 11219594 ID=MsG0780036642.01.T01:cds;Parent=MsG0780036642.01.T01
Chr7 CDS 11219405 11219474 11219405 ID=MsG0780036642.01.T01:cds;Parent=MsG0780036642.01.T01
Chr7 CDS 11218142 11218223 11218142 ID=MsG0780036642.01.T01:cds;Parent=MsG0780036642.01.T01
Chr7 CDS 11217942 11218029 11217942 ID=MsG0780036642.01.T01:cds;Parent=MsG0780036642.01.T01
Gene Sequence

>MsG0780036642.01.T01

ATGCAAATGTTTCAAGAGTTTAAGCAAGCATCAATGGCTATCTTCATTGCAATTCTAGGTTTTTTCTTTGTGTTCTGTTTTTGCTCTGCTCTTTTGAAGTGGAATGAGGTAAGATACAGAAGGAAAGGTTTGCCACAAGGAACAATGGGGTGGCCTGTTTTTGGAGAAACAACTGAGTTTCTTAAACAAGGTCCTAACTTCATGAAAAATCAAGGTCAAGGTAAAAAATCAAAAACAACTTCACATGTTATTTTTTTGTTCTTTTTTGTTTTTCCACCATCATCATTTGATTGGTATGGGAATTTTTTCAAATCTCACATATTAGGATGTCCTACAATTGTATCAATGGATCCAGAACTAAATAGATACATATTGATGAATGAAGCAAAAGGGTTTGTTCCAGGATACCCTCAATCCATGTTAGATATCTTAGGAAAATGTAACATTGCAGCTGTTCATGGCTCCACTCACAAGTACATGAGAGGGACATTGCTTTCAATCATTAGTCCCACTTTAATCAGAAATCAGCTTTTACCTAAAATTGATGAGTTCATGAGACTCATCAAACTAAATGATGAAGAACTTATTGATCTAATCATTACAATTATGTATTCTGGTTATGAAACTATTTCAACTACATCAATGATGGCTGTAAAGTACTTGCATGATCATCCTAAAGTTCTTGATGAAATGAGGAGAAGAAAAAAGCCAGAAGATCCTATTGATTGCAATGATCTCAAGTCCATGAGGTTTACTCGCGCGGTAAGTGGCACTAGACAATGTCCAGGAAAGGAGTTGGGAATAGCAGAAATTTCCACTTTCTTGCACTACTTTGTAACTAGATACAGATGGGAAGAAGTAGGAGGAGATAAACTAATGAAATTTCCTAGAGTTGTGGCACCAAATGGACTGCACATAAGAGTTTCATCTTATTAA
Protein sequence

>MsG0780036642.01.T01

MQMFQEFKQASMAIFIAILGFFFVFCFCSALLKWNEVRYRRKGLPQGTMGWPVFGETTEFLKQGPNFMKNQGQGKKSKTTSHVIFLFFFVFPPSSFDWYGNFFKSHILGCPTIVSMDPELNRYILMNEAKGFVPGYPQSMLDILGKCNIAAVHGSTHKYMRGTLLSIISPTLIRNQLLPKIDEFMRLIKLNDEELIDLIITIMYSGYETISTTSMMAVKYLHDHPKVLDEMRRRKKPEDPIDCNDLKSMRFTRAVSGTRQCPGKELGIAEISTFLHYFVTRYRWEEVGGDKLMKFPRVVAPNGLHIRVSSY*