AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031000.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031000.01.T01 MTR_6g015860 97.452 314 7 1 129 441 10 323 0.0 614
MsG0680031000.01.T01 MTR_7g015870 78.618 304 65 0 126 429 15 318 1.45e-178 501
MsG0680031000.01.T01 MTR_7g015870 77.852 298 66 0 129 426 14 311 1.20e-171 484
MsG0680031000.01.T01 MTR_2g032610 46.959 296 152 3 129 421 22 315 3.40e-94 287
MsG0680031000.01.T01 MTR_8g019480 45.706 326 147 7 130 429 27 348 2.26e-84 263
MsG0680031000.01.T01 MTR_3g104810 41.846 325 161 4 130 429 26 347 4.52e-75 239
MsG0680031000.01.T01 MTR_1g097890 27.761 335 190 12 95 427 22 306 1.28e-28 115
MsG0680031000.01.T01 MTR_5g073040 29.167 264 161 6 148 405 51 294 5.84e-28 113
MsG0680031000.01.T01 MTR_5g073040 23.590 195 140 5 135 325 130 319 5.73e-11 63.9
MsG0680031000.01.T01 MTR_6g034515 26.429 280 171 7 150 419 81 335 3.34e-25 106
MsG0680031000.01.T01 MTR_6g034515 26.437 174 113 4 150 317 174 338 3.22e-11 65.1
MsG0680031000.01.T01 MTR_8g098240 28.214 280 173 6 146 422 330 584 1.26e-23 103
MsG0680031000.01.T01 MTR_8g098240 28.492 179 117 4 136 313 412 580 3.50e-13 72.0
MsG0680031000.01.T01 MTR_3g107510 29.252 294 180 9 140 429 128 397 2.79e-23 101
MsG0680031000.01.T01 MTR_3g107510 25.654 191 135 3 137 327 217 400 1.32e-12 69.3
MsG0680031000.01.T01 MTR_3g107510 25.543 184 122 5 240 423 125 293 4.45e-12 67.8
MsG0680031000.01.T01 MTR_8g092080 29.766 299 170 10 132 427 46 307 1.31e-21 95.5
MsG0680031000.01.T01 MTR_1g012030 28.374 289 179 9 140 424 145 409 3.45e-20 92.8
MsG0680031000.01.T01 MTR_1g012030 26.087 184 129 3 137 320 234 410 3.17e-12 68.6
MsG0680031000.01.T01 MTR_4g114320 25.926 297 186 12 140 429 129 398 1.21e-18 87.8
MsG0680031000.01.T01 MTR_4g012850 24.026 308 209 10 136 437 16 304 4.49e-18 84.7
MsG0680031000.01.T01 MTR_7g109135 30.481 187 111 4 152 329 40 216 1.94e-17 81.3
MsG0680031000.01.T01 MTR_7g109135 30.481 187 111 4 152 329 61 237 3.20e-17 81.3
MsG0680031000.01.T01 MTR_3g098460 24.916 297 201 7 131 423 200 478 7.43e-17 83.2
MsG0680031000.01.T01 MTR_3g098460 25.714 175 123 4 148 320 311 480 6.55e-12 67.8
MsG0680031000.01.T01 MTR_3g098460 27.273 209 124 6 225 427 197 383 9.52e-11 63.9
MsG0680031000.01.T01 MTR_7g109135 30.481 187 111 4 152 329 139 315 1.23e-16 80.9
MsG0680031000.01.T01 MTR_7g109135 23.944 284 189 11 152 424 38 305 2.56e-14 73.9
MsG0680031000.01.T01 MTR_2g102010 24.828 290 189 8 140 423 26 292 1.37e-16 80.5
MsG0680031000.01.T01 MTR_3g025800 25.490 306 178 10 150 423 42 329 2.03e-16 80.9
MsG0680031000.01.T01 MTR_4g088545 24.878 205 136 5 226 422 1 195 8.29e-16 77.0
MsG0680031000.01.T01 MTR_4g088545 24.878 205 136 5 226 422 1 195 9.51e-16 77.4
MsG0680031000.01.T01 MTR_5g055410 30.348 201 110 7 152 339 135 318 1.90e-15 77.8
MsG0680031000.01.T01 MTR_5g055410 25.263 285 190 8 152 427 37 307 1.94e-15 77.8
MsG0680031000.01.T01 MTR_8g027975 23.839 323 211 7 125 424 42 352 2.37e-15 77.4
MsG0680031000.01.T01 MTR_5g009500 25.163 306 201 7 137 422 38 335 5.63e-15 76.3
MsG0680031000.01.T01 MTR_7g064980 22.368 304 208 5 140 430 31 319 6.16e-15 75.9
MsG0680031000.01.T01 MTR_1g087840 28.729 181 122 2 152 329 136 312 6.78e-15 75.5
MsG0680031000.01.T01 MTR_1g087840 23.958 288 184 11 152 424 35 302 9.78e-13 69.3
MsG0680031000.01.T01 MTR_7g084400 30.102 196 119 6 234 427 208 387 7.87e-15 76.6
MsG0680031000.01.T01 MTR_8g096050 22.687 335 228 10 94 423 192 500 1.01e-14 76.6
MsG0680031000.01.T01 MTR_8g096050 28.090 178 115 4 148 320 333 502 6.69e-14 73.9
MsG0680031000.01.T01 MTR_8g096050 29.082 196 119 6 234 427 228 405 1.04e-11 67.0
MsG0680031000.01.T01 MTR_7g084400 30.102 196 119 6 234 427 214 393 1.09e-14 76.3
MsG0680031000.01.T01 MTR_7g084400 28.977 176 107 5 150 320 323 485 1.61e-13 72.8
MsG0680031000.01.T01 MTR_2g436930 22.222 297 193 7 152 419 31 318 1.63e-14 74.7
MsG0680031000.01.T01 MTR_7g109135 29.518 166 101 3 170 329 153 308 2.04e-14 74.3
MsG0680031000.01.T01 MTR_7g109135 24.382 283 182 9 152 424 38 298 1.90e-12 68.2
MsG0680031000.01.T01 MTR_4g057850 25.763 295 180 12 150 424 36 311 2.60e-14 73.9
MsG0680031000.01.T01 MTR_7g066690 25.874 286 191 7 152 430 33 304 2.89e-14 73.6
MsG0680031000.01.T01 MTR_1g095780 24.161 298 188 9 138 430 526 790 4.68e-14 74.7
MsG0680031000.01.T01 MTR_4g119770 21.284 296 199 5 152 419 30 319 1.47e-13 72.0
MsG0680031000.01.T01 MTR_4g119770 25.571 219 137 5 220 423 1 208 5.16e-11 63.9
MsG0680031000.01.T01 MTR_7g068340 25.087 287 177 9 152 429 103 360 1.86e-13 72.0
MsG0680031000.01.T01 MTR_8g076760 24.390 287 197 7 150 425 28 305 3.72e-13 70.5
MsG0680031000.01.T01 MTR_1g090330 22.109 294 185 11 151 425 29 297 1.75e-12 68.2
MsG0680031000.01.T01 MTR_8g066975 25.436 287 183 9 151 422 23 293 1.80e-12 68.2
MsG0680031000.01.T01 MTR_8g066975 28.191 188 119 5 136 313 108 289 1.95e-11 65.1
MsG0680031000.01.T01 MTR_5g030530 25.087 287 184 11 151 422 23 293 7.86e-12 66.2
MsG0680031000.01.T01 MTR_1g088995 26.042 192 108 2 247 427 43 211 1.62e-11 64.3
MsG0680031000.01.T01 MTR_4g119770 25.571 219 137 5 220 423 1 208 1.93e-11 64.7
MsG0680031000.01.T01 MTR_4g005330 25.862 174 121 4 147 320 188 353 2.55e-11 65.5
MsG0680031000.01.T01 MTR_1g088995 26.042 192 108 2 247 427 43 211 2.85e-11 64.7
MsG0680031000.01.T01 MTR_4g016730 24.913 289 172 11 152 429 105 359 2.88e-11 65.1
MsG0680031000.01.T01 MTR_4g005330 25.862 174 121 4 147 320 122 287 3.18e-11 64.3
MsG0680031000.01.T01 MTR_4g088545 25.267 281 175 10 140 402 14 277 3.42e-11 64.3
MsG0680031000.01.T01 MTR_3g104500 23.936 188 133 4 136 320 141 321 4.07e-11 64.3
MsG0680031000.01.T01 MTR_2g436930 24.211 190 132 2 136 313 38 227 7.80e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031000.01.T01 AT5G15640 75.578 303 72 2 129 429 14 316 2.58e-165 468
MsG0680031000.01.T01 AT5G15640 75.248 303 73 2 129 429 21 323 4.55e-165 468
MsG0680031000.01.T01 AT1G72820 45.483 321 151 5 130 429 25 342 3.02e-86 268
MsG0680031000.01.T01 AT1G72820 45.483 321 151 5 130 429 25 342 3.02e-86 268
MsG0680031000.01.T01 AT5G26200 44.620 316 152 6 130 429 33 341 1.92e-83 260
MsG0680031000.01.T01 AT1G07030 28.417 278 174 6 134 405 38 296 5.44e-28 113
MsG0680031000.01.T01 AT2G30160 28.125 320 197 8 117 422 18 318 3.93e-26 108
MsG0680031000.01.T01 AT1G34065 30.035 283 160 10 146 427 85 330 1.13e-25 107
MsG0680031000.01.T01 AT1G34065 30.035 283 160 10 146 427 92 337 1.21e-25 107
MsG0680031000.01.T01 AT4G39460 28.622 283 164 9 146 427 68 313 2.46e-23 100
MsG0680031000.01.T01 AT4G39460 28.622 283 164 9 146 427 68 313 2.46e-23 100
MsG0680031000.01.T01 AT4G39460 28.622 283 164 9 146 427 68 313 2.46e-23 100
MsG0680031000.01.T01 AT5G42130 26.780 295 173 8 148 423 130 400 9.05e-22 97.4
MsG0680031000.01.T01 AT4G11440 26.190 294 195 7 132 422 326 600 8.61e-21 95.5
MsG0680031000.01.T01 AT4G11440 26.190 294 195 7 132 422 326 600 8.61e-21 95.5
MsG0680031000.01.T01 AT2G37890 27.559 254 161 8 179 424 93 331 2.28e-20 92.0
MsG0680031000.01.T01 AT2G37890 26.404 178 123 4 145 320 161 332 1.83e-12 68.6
MsG0680031000.01.T01 AT5G51050 24.917 301 195 9 130 423 217 493 8.69e-18 85.9
MsG0680031000.01.T01 AT5G51050 28.718 195 117 6 234 424 224 400 2.18e-11 66.2
MsG0680031000.01.T01 AT4G01100 25.545 321 204 7 125 422 33 341 9.22e-18 84.7
MsG0680031000.01.T01 AT4G01100 26.633 199 133 5 239 432 45 235 3.14e-11 65.1
MsG0680031000.01.T01 AT3G53940 25.490 255 169 5 179 426 121 361 1.45e-17 84.3
MsG0680031000.01.T01 AT3G53940 29.730 148 96 4 149 294 193 334 1.40e-13 72.4
MsG0680031000.01.T01 AT4G01100 24.916 297 190 6 149 422 5 291 2.05e-17 83.2
MsG0680031000.01.T01 AT4G01100 26.816 179 119 4 260 432 13 185 8.43e-11 63.2
MsG0680031000.01.T01 AT4G32400 25.597 293 192 8 140 429 120 389 1.10e-16 82.0
MsG0680031000.01.T01 AT2G26360 25.362 276 174 7 150 423 129 374 1.27e-16 81.6
MsG0680031000.01.T01 AT3G55640 26.578 301 192 10 140 428 44 327 1.75e-16 80.9
MsG0680031000.01.T01 AT3G55640 26.578 301 192 10 140 428 44 327 1.75e-16 80.9
MsG0680031000.01.T01 AT2G35800 23.891 293 193 6 138 429 546 809 4.61e-16 81.3
MsG0680031000.01.T01 AT1G79900 24.275 276 173 11 151 419 31 277 6.48e-16 78.6
MsG0680031000.01.T01 AT5G46800 26.460 291 178 9 151 422 23 296 6.55e-16 78.6
MsG0680031000.01.T01 AT5G46800 31.937 191 102 5 253 426 24 203 4.97e-14 72.8
MsG0680031000.01.T01 AT5G46800 24.742 194 121 5 136 313 108 292 2.79e-11 64.7
MsG0680031000.01.T01 AT5G46800 26.460 291 178 9 151 422 23 296 6.55e-16 78.6
MsG0680031000.01.T01 AT5G46800 31.937 191 102 5 253 426 24 203 4.97e-14 72.8
MsG0680031000.01.T01 AT5G46800 24.742 194 121 5 136 313 108 292 2.79e-11 64.7
MsG0680031000.01.T01 AT5G46800 26.460 291 178 9 151 422 23 296 6.55e-16 78.6
MsG0680031000.01.T01 AT5G46800 31.937 191 102 5 253 426 24 203 4.97e-14 72.8
MsG0680031000.01.T01 AT5G46800 24.742 194 121 5 136 313 108 292 2.79e-11 64.7
MsG0680031000.01.T01 AT3G54110 25.087 287 186 6 148 423 27 295 7.16e-16 78.6
MsG0680031000.01.T01 AT5G01340 26.667 270 167 9 150 407 31 281 8.37e-16 78.2
MsG0680031000.01.T01 AT4G01100 25.519 337 198 10 125 422 33 355 8.63e-16 79.0
MsG0680031000.01.T01 AT5G07320 23.404 282 190 8 149 428 222 479 1.43e-15 79.0
MsG0680031000.01.T01 AT2G47490 25.874 286 180 9 152 424 33 299 4.34e-15 76.3
MsG0680031000.01.T01 AT2G47490 25.000 192 125 4 148 330 129 310 2.12e-12 68.2
MsG0680031000.01.T01 AT1G14140 23.103 290 188 9 151 425 31 300 7.80e-15 75.5
MsG0680031000.01.T01 AT5G61810 25.000 304 192 11 132 428 61 335 1.78e-14 74.7
MsG0680031000.01.T01 AT5G61810 25.000 304 192 11 132 428 204 478 2.86e-14 75.1
MsG0680031000.01.T01 AT3G51870 26.667 285 175 10 152 429 107 364 3.40e-14 74.3
MsG0680031000.01.T01 AT1G74240 23.099 342 213 10 113 422 10 333 4.44e-14 73.9
MsG0680031000.01.T01 AT1G74240 23.667 300 186 8 150 422 2 285 5.12e-14 73.2
MsG0680031000.01.T01 AT5G66380 26.351 296 196 10 143 427 18 302 1.14e-13 72.0
MsG0680031000.01.T01 AT2G33820 26.396 197 119 5 238 422 19 201 1.82e-13 70.9
MsG0680031000.01.T01 AT3G20240 26.630 184 127 4 137 320 164 339 2.08e-13 71.6
MsG0680031000.01.T01 AT3G20240 24.832 298 190 10 120 401 36 315 1.92e-11 65.5
MsG0680031000.01.T01 AT1G25380 23.158 285 191 7 152 424 37 305 5.10e-13 70.5
MsG0680031000.01.T01 AT1G25380 30.000 190 118 5 147 328 132 314 6.52e-13 70.1
MsG0680031000.01.T01 AT1G25380 23.158 285 191 7 152 424 37 305 5.10e-13 70.5
MsG0680031000.01.T01 AT1G25380 30.000 190 118 5 147 328 132 314 6.52e-13 70.1
MsG0680031000.01.T01 AT2G33820 26.396 197 119 5 238 422 19 201 7.63e-13 69.7
MsG0680031000.01.T01 AT2G33820 25.081 307 197 11 134 424 16 305 6.86e-11 63.5
MsG0680031000.01.T01 AT4G26180 22.593 270 172 5 149 400 34 284 8.32e-13 69.3
MsG0680031000.01.T01 AT4G26180 28.643 199 115 6 239 423 24 209 2.64e-12 67.8
MsG0680031000.01.T01 AT4G03115 25.743 202 112 4 237 427 39 213 8.71e-13 68.2
MsG0680031000.01.T01 AT5G56450 27.083 192 122 6 136 320 145 325 1.12e-12 69.3
MsG0680031000.01.T01 AT4G26180 22.593 270 172 5 149 400 34 284 1.14e-12 69.3
MsG0680031000.01.T01 AT4G26180 28.643 199 115 6 239 423 24 209 2.22e-12 68.2
MsG0680031000.01.T01 AT4G03115 25.743 202 112 4 237 427 39 213 1.25e-12 67.8
MsG0680031000.01.T01 AT4G03115 25.778 225 119 6 237 440 71 268 1.84e-12 68.6
MsG0680031000.01.T01 AT5G58970 23.311 296 182 11 152 428 32 301 2.58e-12 67.8
MsG0680031000.01.T01 AT4G03115 25.243 206 116 4 237 431 39 217 2.99e-12 67.8
MsG0680031000.01.T01 AT5G48970 23.492 315 197 9 138 420 27 329 1.48e-11 65.9
MsG0680031000.01.T01 AT5G48970 22.556 266 179 6 173 420 2 258 4.51e-11 63.5
MsG0680031000.01.T01 AT5G01500 25.606 289 173 11 152 429 135 392 6.57e-11 64.3

Find 113 sgRNAs with CRISPR-Local

Find 414 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAACTCAATTTACATAGTT+TGG 0.153023 6:+12706718 None:intergenic
TACCTGTCCCAGTTGATTTC+GGG 0.231208 6:+12711598 None:intergenic
GGCATTCGTGGTTTGTATAA+AGG 0.257870 6:-12710215 MsG0680031000.01.T01:CDS
GTAGTTTCAGATAGTTTAAA+TGG 0.289394 6:+12710098 None:intergenic
ATACCTGTCCCAGTTGATTT+CGG 0.301520 6:+12711597 None:intergenic
TTAGACAATTATATTGGATT+AGG 0.301617 6:-12706510 MsG0680031000.01.T01:three_prime_UTR
ACATACACGTGAACATAATA+AGG 0.306196 6:+12710410 None:intergenic
TAGTCTGCCAAAGATTGTTT+TGG 0.312137 6:-12708182 MsG0680031000.01.T01:CDS
ACCCTTGCACCATCAACTTT+TGG 0.312637 6:+12709053 None:intergenic
ATGGGGTACTTCAATGATAT+TGG 0.313800 6:-12707334 MsG0680031000.01.T01:CDS
AGGAGTACCTTTCTCAGATT+TGG 0.314795 6:+12708204 None:intergenic
GCCTGAACCAAAACAATCTT+TGG 0.320437 6:+12708175 None:intergenic
ATCAGTTTGTTCTTGTTGTC+AGG 0.330829 6:+12706293 None:intergenic
GCTCAAGTCAACGCTTCTTA+TGG 0.333157 6:-12708886 MsG0680031000.01.T01:CDS
TCAGATTAGCCAAAAGTTGA+TGG 0.349779 6:-12709062 MsG0680031000.01.T01:intron
GAACTCAATTTACATAGTTT+GGG 0.354251 6:+12706719 None:intergenic
TGGCTGCTCCCGAAATCAAC+TGG 0.354331 6:-12711606 MsG0680031000.01.T01:CDS
TAATTTCAATTGATTCTGTT+TGG 0.355297 6:-12712523 MsG0680031000.01.T01:CDS
GCATTCGTGGTTTGTATAAA+GGG 0.363110 6:-12710214 MsG0680031000.01.T01:CDS
TACAATCAAGACTCGGTTAC+AGG 0.372914 6:-12708098 MsG0680031000.01.T01:intron
TTTGTGGGATGAGTTGATTT+TGG 0.373035 6:-12706694 MsG0680031000.01.T01:three_prime_UTR
TCAACTGATTAGCCAAGATA+TGG 0.373942 6:-12706743 MsG0680031000.01.T01:exon
CATAGTTTGGGACCATATCT+TGG 0.375572 6:+12706731 None:intergenic
GCTGACATGCTGACAAATCT+TGG 0.376196 6:+12707357 None:intergenic
TGATAAGGTCTGAGGGAATC+CGG 0.376535 6:-12708982 MsG0680031000.01.T01:CDS
AATTATCGTACCACGTCAAT+TGG 0.383684 6:+12710008 None:intergenic
AAATCCAATGTTCAAGTTGT+AGG 0.385322 6:+12706646 None:intergenic
CGTGGTTTGTATAAAGGGTT+TGG 0.386999 6:-12710209 MsG0680031000.01.T01:CDS
ACTATTACTACACATTTAGA+AGG 0.387923 6:+12706388 None:intergenic
GGCAGTGAGAAATATGATTC+TGG 0.390248 6:+12710160 None:intergenic
AAAGGTGTATATAGAGGATT+AGG 0.398284 6:-12707381 MsG0680031000.01.T01:CDS
TGCTCCTACAACTTGAACAT+TGG 0.400067 6:-12706650 MsG0680031000.01.T01:three_prime_UTR
ATTCACCATCTAGCGCTGTT+TGG 0.406563 6:-12708922 MsG0680031000.01.T01:CDS
AATTGATTCTGTTTGGATTG+AGG 0.409553 6:-12712516 MsG0680031000.01.T01:CDS
ATGCACTTCTCTCCGCAGTA+TGG 0.411717 6:+12710270 None:intergenic
CACCATCTAGCGCTGTTTGG+TGG 0.425293 6:-12708919 MsG0680031000.01.T01:CDS
TAAAACAAAATTCTATGTAG+TGG 0.425595 6:-12710372 MsG0680031000.01.T01:CDS
TCAGGAAATAATCATTGGAT+TGG 0.432268 6:-12706583 MsG0680031000.01.T01:three_prime_UTR
TGGGTTAATTAATGTACAAT+GGG 0.438182 6:-12706464 MsG0680031000.01.T01:three_prime_UTR
GATAAGGTCTGAGGGAATCC+GGG 0.449548 6:-12708981 MsG0680031000.01.T01:CDS
GAAGCGTTTGGTCAGCAATC+TGG 0.451010 6:-12706773 MsG0680031000.01.T01:CDS
GCCCACCAAACAGCGCTAGA+TGG 0.463527 6:+12708917 None:intergenic
CTCAAGACAGATGGCATTCG+TGG 0.467371 6:-12710227 MsG0680031000.01.T01:CDS
CTAGTCTTCACAACAGAGAC+AGG 0.467783 6:+12710311 None:intergenic
TCAGGCCATGCCCAGTATAG+TGG 0.467839 6:-12709028 MsG0680031000.01.T01:CDS
CCTTGTACAAATATTTATAG+AGG 0.469403 6:-12706322 MsG0680031000.01.T01:three_prime_UTR
ATGTTGCTCGTAAGTTGATA+AGG 0.474358 6:-12708997 MsG0680031000.01.T01:CDS
AATTGATCAGTGAGGATGGT+TGG 0.475537 6:-12707404 MsG0680031000.01.T01:CDS
GGCAGGAATTGCTCCGGTGA+CGG 0.476552 6:+12710181 None:intergenic
CCTCTATAAATATTTGTACA+AGG 0.478396 6:+12706322 None:intergenic
ATGGGTTAATTAATGTACAA+TGG 0.478881 6:-12706465 MsG0680031000.01.T01:three_prime_UTR
AAATGGTTCAAGCATCTTGA+AGG 0.482454 6:+12710115 None:intergenic
AAATTCTATGTAGTGGGAGC+TGG 0.484600 6:-12710365 MsG0680031000.01.T01:CDS
CTCCCGAAATCAACTGGGAC+AGG 0.489215 6:-12711600 MsG0680031000.01.T01:intron
TGCGCAAAAGATGAAGCGTT+TGG 0.503751 6:-12706785 MsG0680031000.01.T01:CDS
GGTTGGAAAGGTGTATATAG+AGG 0.505069 6:-12707387 MsG0680031000.01.T01:CDS
GATTTGTCAGCATGTCAGCA+TGG 0.509157 6:-12707353 MsG0680031000.01.T01:CDS
GCTGTTTGGTGGGCAAGTTA+CGG 0.509649 6:-12708908 MsG0680031000.01.T01:CDS
CTGTCTCTGTTGTGAAGACT+AGG 0.510659 6:-12710310 MsG0680031000.01.T01:CDS
GGGTTTGGCACTGCCGTCAC+CGG 0.512242 6:-12710194 MsG0680031000.01.T01:CDS
ACCATCTAGCGCTGTTTGGT+GGG 0.512623 6:-12708918 MsG0680031000.01.T01:CDS
AAAACAATCTTTGGCAGACT+AGG 0.516654 6:+12708184 None:intergenic
ACGTGAACATAATAAGGATA+AGG 0.519738 6:+12710416 None:intergenic
ATTTGTCAGCATGTCAGCAT+GGG 0.524386 6:-12707352 MsG0680031000.01.T01:CDS
GGCTGCTCCCGAAATCAACT+GGG 0.527795 6:-12711605 MsG0680031000.01.T01:CDS
AGCCAAAAGTTGATGGTGCA+AGG 0.530699 6:-12709055 MsG0680031000.01.T01:CDS
GCCATAGCGAATGGCATTGG+TGG 0.530848 6:-12710068 MsG0680031000.01.T01:CDS
AAAACAAAATTCTATGTAGT+GGG 0.534149 6:-12710371 MsG0680031000.01.T01:CDS
TTGATGGTGCAAGGGTACTC+AGG 0.535278 6:-12709046 MsG0680031000.01.T01:CDS
TGATTCTCTTAATGTGGTCA+AGG 0.538749 6:-12712693 MsG0680031000.01.T01:CDS
CAGGCCATGCCCAGTATAGT+GGG 0.540829 6:-12709027 MsG0680031000.01.T01:CDS
CGAGTCTTGATTGTATCCAA+TGG 0.544870 6:+12708106 None:intergenic
TTTCGAAACATTGTTGTGGA+AGG 0.545092 6:-12712716 MsG0680031000.01.T01:CDS
TGCCTTAGAGACCACAAAAG+TGG 0.546512 6:-12710141 MsG0680031000.01.T01:CDS
GCCACCAATGCCATTCGCTA+TGG 0.548089 6:+12710067 None:intergenic
ACACCACAGGTGATGGGACA+TGG 0.553449 6:-12707459 MsG0680031000.01.T01:intron
GCTGCCATAGCGAATGGCAT+TGG 0.561150 6:-12710071 MsG0680031000.01.T01:CDS
GTGAGAAATATGATTCTGGC+AGG 0.562074 6:+12710164 None:intergenic
GATGACACCAAATCTGAGAA+AGG 0.563822 6:-12708211 MsG0680031000.01.T01:CDS
TGTTGTGAAGACTAGGATGC+AGG 0.567417 6:-12710303 MsG0680031000.01.T01:CDS
ACAAAAGACATGAGATCGAG+CGG 0.569459 6:-12712457 MsG0680031000.01.T01:CDS
GGCCATGCCCAGTATAGTGG+GGG 0.584867 6:-12709025 MsG0680031000.01.T01:CDS
GATTCTGGCAGGAATTGCTC+CGG 0.586094 6:+12710175 None:intergenic
ATCGTGCATTACAACTCCAT+TGG 0.587880 6:-12708122 MsG0680031000.01.T01:CDS
TTGGTTACACCACAGGTGAT+GGG 0.589050 6:-12707465 MsG0680031000.01.T01:intron
CAAGTCAACGCTTCTTATGG+AGG 0.592490 6:-12708883 MsG0680031000.01.T01:intron
GCCAAAAGTTGATGGTGCAA+GGG 0.597627 6:-12709054 MsG0680031000.01.T01:CDS
AGTGCATTGTCTGTTGTGAA+AGG 0.598153 6:-12710254 MsG0680031000.01.T01:CDS
TCGTAAGTTGATAAGGTCTG+AGG 0.600329 6:-12708990 MsG0680031000.01.T01:CDS
ATCAGTGAGGATGGTTGGAA+AGG 0.600695 6:-12707399 MsG0680031000.01.T01:CDS
CAAAAGACATGAGATCGAGC+GGG 0.605184 6:-12712456 MsG0680031000.01.T01:CDS
AAAGAATTGATCAGTGAGGA+TGG 0.605272 6:-12707408 MsG0680031000.01.T01:CDS
CGTAAGTTGATAAGGTCTGA+GGG 0.606397 6:-12708989 MsG0680031000.01.T01:CDS
GTTAATTAATGTACAATGGG+AGG 0.612967 6:-12706461 MsG0680031000.01.T01:three_prime_UTR
ATAAGGTCTGAGGGAATCCG+GGG 0.614856 6:-12708980 MsG0680031000.01.T01:CDS
TATTGCTTCTGATGTCGCAA+TGG 0.615123 6:-12712480 MsG0680031000.01.T01:CDS
AGGCCATGCCCAGTATAGTG+GGG 0.616339 6:-12709026 MsG0680031000.01.T01:CDS
AAAGGATTACTCAAGACAGA+TGG 0.621271 6:-12710236 MsG0680031000.01.T01:CDS
GCGACATCAGAAGCAATACA+AGG 0.621846 6:+12712485 None:intergenic
TAAACTATCTGAAACTACAC+AGG 0.624945 6:-12710093 MsG0680031000.01.T01:CDS
CAAACCCTCGGTATAACCCC+CGG 0.627668 6:+12708963 None:intergenic
ACACAGGCTGCCATAGCGAA+TGG 0.640012 6:-12710077 MsG0680031000.01.T01:CDS
CATTGGATACAATCAAGACT+CGG 0.643386 6:-12708105 MsG0680031000.01.T01:CDS
GGAAGGTGATTCTCTTAATG+TGG 0.654184 6:-12712699 MsG0680031000.01.T01:CDS
TGTTAAAGAATTGATCAGTG+AGG 0.667195 6:-12707412 MsG0680031000.01.T01:CDS
AAGACATGAGATCGAGCGGG+AGG 0.680676 6:-12712453 MsG0680031000.01.T01:intron
TAACAGATAGACCAAACCCT+CGG 0.686669 6:+12708951 None:intergenic
TTTGTCAGCATGTCAGCATG+GGG 0.695351 6:-12707351 MsG0680031000.01.T01:CDS
TGTGTTTGTTCCAATTGACG+TGG 0.709166 6:-12710018 MsG0680031000.01.T01:intron
TAGTCTTCACAACAGAGACA+GGG 0.714360 6:+12710312 None:intergenic
TAAGGTCTGAGGGAATCCGG+GGG 0.742890 6:-12708979 MsG0680031000.01.T01:CDS
GGTTGCTTCAAACCATACTG+CGG 0.743023 6:-12710282 MsG0680031000.01.T01:CDS
ACATCAGAAGCAATACAAGG+AGG 0.757821 6:+12712488 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTTCCATTTATATT+AGG + Chr6:12711426-12711445 None:intergenic 10.0%
!! AAAAATTTCCATTTATATTA+GGG + Chr6:12711425-12711444 None:intergenic 10.0%
!! ATATAAGAATACAATAAAAA+AGG + Chr6:12708474-12708493 None:intergenic 10.0%
!! TATAAGAATACAATAAAAAA+GGG + Chr6:12708473-12708492 None:intergenic 10.0%
!!! AAAAGTTATTTTCAAAATTA+AGG - Chr6:12707223-12707242 MsG0680031000.01.T01:intron 10.0%
!!! AAAGTTATTTTCAAAATTAA+GGG - Chr6:12707224-12707243 MsG0680031000.01.T01:intron 10.0%
!!! AACTTTTTTTTTTTTTGTAA+TGG - Chr6:12710683-12710702 MsG0680031000.01.T01:intron 10.0%
!!! ATATTTTACTAATAATGATT+TGG - Chr6:12711005-12711024 MsG0680031000.01.T01:intron 10.0%
!!! ATTTTTTTAGACAATTATAT+TGG - Chr6:12712503-12712522 MsG0680031000.01.T01:CDS 10.0%
!!! TTTGAAAATAACTTTTTTTA+GGG + Chr6:12707219-12707238 None:intergenic 10.0%
!!! TTTTGAAAATAACTTTTTTT+AGG + Chr6:12707220-12707239 None:intergenic 10.0%
!! AAAAGAAAAAAAACTAATCT+CGG + Chr6:12710661-12710680 None:intergenic 15.0%
!! AAGAATACATAAAAAAAGAA+GGG + Chr6:12708258-12708277 None:intergenic 15.0%
!! AATATGACATTAAATTCATA+TGG + Chr6:12709843-12709862 None:intergenic 15.0%
!! AATGAATAAGTGTTAAATTT+AGG - Chr6:12710175-12710194 MsG0680031000.01.T01:CDS 15.0%
!! ACTTATAAATATTGATATCA+CGG + Chr6:12707183-12707202 None:intergenic 15.0%
!! TAAGAATACATAAAAAAAGA+AGG + Chr6:12708259-12708278 None:intergenic 15.0%
!! TACATATGTAGAAAAAATTA+CGG + Chr6:12708340-12708359 None:intergenic 15.0%
!!! ATATTTTTACTGTTTTCATT+TGG - Chr6:12710970-12710989 MsG0680031000.01.T01:intron 15.0%
!!! ATTTGATAATGGTTATTATA+AGG - Chr6:12707656-12707675 MsG0680031000.01.T01:intron 15.0%
!!! ATTTTACTATTTTGAGAATA+TGG - Chr6:12707821-12707840 MsG0680031000.01.T01:intron 15.0%
!!! GAAAATAATATTTTTCCAAT+AGG + Chr6:12712483-12712502 None:intergenic 15.0%
!!! TCAAATATTCTTTTTTAGAA+AGG + Chr6:12709737-12709756 None:intergenic 15.0%
!! AAAACAAAATTCTATGTAGT+GGG - Chr6:12708648-12708667 MsG0680031000.01.T01:intron 20.0%
!! AAAGAAAAAAAACTAATCTC+GGG + Chr6:12710660-12710679 None:intergenic 20.0%
!! AACTACAAAAAGGTAAAATA+CGG + Chr6:12712059-12712078 None:intergenic 20.0%
!! AATATTTATAAGTACTCTTG+TGG - Chr6:12707190-12707209 MsG0680031000.01.T01:intron 20.0%
!! AATTCCTATATTTATAGTGA+AGG + Chr6:12706633-12706652 None:intergenic 20.0%
!! AATTGAATGAAGAATGAAAT+CGG + Chr6:12707471-12707490 None:intergenic 20.0%
!! ATATTTATAAGTACTCTTGT+GGG - Chr6:12707191-12707210 MsG0680031000.01.T01:intron 20.0%
!! ATGTAAAAATTATCATCGAT+AGG + Chr6:12706363-12706382 None:intergenic 20.0%
!! ATTAAAAATGTAGTGATTAG+TGG - Chr6:12707631-12707650 MsG0680031000.01.T01:intron 20.0%
!! ATTAAACCCTTAATTATCAT+AGG + Chr6:12707309-12707328 None:intergenic 20.0%
!! GAAGTAATAACATTTGAATA+AGG + Chr6:12709895-12709914 None:intergenic 20.0%
!! GTAAGAAAAAAACTACAAAA+AGG + Chr6:12712069-12712088 None:intergenic 20.0%
!! TAAAACAAAATTCTATGTAG+TGG - Chr6:12708647-12708666 MsG0680031000.01.T01:intron 20.0%
!! TAACTTTCTGTGTATAATAA+AGG + Chr6:12709048-12709067 None:intergenic 20.0%
!! TTAAACCCTTAATTATCATA+GGG + Chr6:12707308-12707327 None:intergenic 20.0%
!! TTAGACAATTATATTGGATT+AGG - Chr6:12712509-12712528 MsG0680031000.01.T01:CDS 20.0%
!! TTATAAGGATGTAATTGTAA+CGG - Chr6:12708158-12708177 MsG0680031000.01.T01:CDS 20.0%
!! TTATATGTTCAAATAATCTG+TGG - Chr6:12708488-12708507 MsG0680031000.01.T01:intron 20.0%
!! TTCACTATAAATATAGGAAT+TGG - Chr6:12706632-12706651 MsG0680031000.01.T01:three_prime_UTR 20.0%
!! TTTGTCAATCAAAAAATCAA+CGG + Chr6:12709650-12709669 None:intergenic 20.0%
!!! AAGGGGTAATAATATTTTTT+TGG - Chr6:12707088-12707107 MsG0680031000.01.T01:intron 20.0%
!!! AGATATGAAATTTTTCCTAT+TGG - Chr6:12712465-12712484 MsG0680031000.01.T01:CDS 20.0%
!!! ATCGATGATAATTTTTACAT+TGG - Chr6:12706363-12706382 MsG0680031000.01.T01:three_prime_UTR 20.0%
!!! ATTCTTTTCTAACATTGTTA+TGG - Chr6:12712535-12712554 MsG0680031000.01.T01:CDS 20.0%
!!! ATTTTTCAGGAAATAATCAT+TGG - Chr6:12712431-12712450 MsG0680031000.01.T01:intron 20.0%
!!! CAAAATCTGTATTTGATTTT+AGG + Chr6:12710483-12710502 None:intergenic 20.0%
!!! GTTGTTAAAACATTGATTTT+GGG - Chr6:12708066-12708085 MsG0680031000.01.T01:intron 20.0%
!!! GTTTTTGATTGGTATATTTA+TGG + Chr6:12706837-12706856 None:intergenic 20.0%
!!! TAATTTCAATTGATTCTGTT+TGG - Chr6:12706496-12706515 MsG0680031000.01.T01:three_prime_UTR 20.0%
!!! TCTACTGAAATTTTATTTCT+TGG + Chr6:12710724-12710743 None:intergenic 20.0%
!!! TTCTTTTCTAACATTGTTAT+GGG - Chr6:12712536-12712555 MsG0680031000.01.T01:CDS 20.0%
! AAAAAAATTGGACTCATTGA+TGG - Chr6:12709076-12709095 MsG0680031000.01.T01:intron 25.0%
! AAATATAACAACAACCAACA+AGG + Chr6:12710956-12710975 None:intergenic 25.0%
! AATACAATAAAAAAGGGAAG+TGG + Chr6:12708467-12708486 None:intergenic 25.0%
! AATACATAAAAAAAGAAGGG+AGG + Chr6:12708255-12708274 None:intergenic 25.0%
! AATATAAGGTTGAAACTATC+TGG + Chr6:12712025-12712044 None:intergenic 25.0%
! AATTGGATCCAAAATAAGAA+GGG - Chr6:12707070-12707089 MsG0680031000.01.T01:intron 25.0%
! ACTATTACTACACATTTAGA+AGG + Chr6:12712634-12712653 None:intergenic 25.0%
! AGAAAACAAGAAGAAGTAAT+TGG - Chr6:12707053-12707072 MsG0680031000.01.T01:intron 25.0%
! AGATGATATAGAATGAACTA+AGG + Chr6:12707007-12707026 None:intergenic 25.0%
! AGTACACTTTAATACATATG+TGG - Chr6:12709132-12709151 MsG0680031000.01.T01:intron 25.0%
! AGTTGATTGAAAAAATTGGT+TGG + Chr6:12706974-12706993 None:intergenic 25.0%
! ATACAATAAAAAAGGGAAGT+GGG + Chr6:12708466-12708485 None:intergenic 25.0%
! ATATTAAGGAGAATATTCAC+TGG - Chr6:12710763-12710782 MsG0680031000.01.T01:intron 25.0%
! ATGTATTGCCCTAATATAAA+TGG - Chr6:12711414-12711433 MsG0680031000.01.T01:intron 25.0%
! ATTCAATTAAAACTCATGTC+TGG - Chr6:12711847-12711866 MsG0680031000.01.T01:intron 25.0%
! CAATTGAGTCAGAAAAAATT+AGG + Chr6:12711537-12711556 None:intergenic 25.0%
! CATAAACGATAGTATTATAC+AGG + Chr6:12712152-12712171 None:intergenic 25.0%
! CATTCCTTCACTATAAATAT+AGG - Chr6:12706626-12706645 MsG0680031000.01.T01:three_prime_UTR 25.0%
! CCTCTATAAATATTTGTACA+AGG + Chr6:12712700-12712719 None:intergenic 25.0%
! CCTTGTACAAATATTTATAG+AGG - Chr6:12712697-12712716 MsG0680031000.01.T01:CDS 25.0%
! GAACTCAATTTACATAGTTT+GGG + Chr6:12712303-12712322 None:intergenic 25.0%
! GATGCATACTAACAATATTA+AGG - Chr6:12710749-12710768 MsG0680031000.01.T01:intron 25.0%
! GATTAGTGGTAATTTGATAA+TGG - Chr6:12707645-12707664 MsG0680031000.01.T01:intron 25.0%
! GTACACTTTAATACATATGT+GGG - Chr6:12709133-12709152 MsG0680031000.01.T01:intron 25.0%
! GTAGTTTCAGATAGTTTAAA+TGG + Chr6:12708924-12708943 None:intergenic 25.0%
! GTGTATGATACTTATACATA+TGG - Chr6:12709101-12709120 MsG0680031000.01.T01:intron 25.0%
! GTTGGGGAAAATAATTAAAA+TGG - Chr6:12709351-12709370 MsG0680031000.01.T01:intron 25.0%
! TAATAGCTAATCCAAACAAT+AGG - Chr6:12709763-12709782 MsG0680031000.01.T01:intron 25.0%
! TAATTGGATCCAAAATAAGA+AGG - Chr6:12707069-12707088 MsG0680031000.01.T01:intron 25.0%
! TATAAAGCAGAAAAAATCAC+AGG + Chr6:12708143-12708162 None:intergenic 25.0%
! TATAGTGAAGGAATGATTTA+GGG + Chr6:12706621-12706640 None:intergenic 25.0%
! TATTAATTGATGAACCTAAC+TGG + Chr6:12710365-12710384 None:intergenic 25.0%
! TGGGTTAATTAATGTACAAT+GGG - Chr6:12712555-12712574 MsG0680031000.01.T01:CDS 25.0%
! TTATAGTGAAGGAATGATTT+AGG + Chr6:12706622-12706641 None:intergenic 25.0%
! TTGTCAATCAAAAAATCAAC+GGG + Chr6:12709649-12709668 None:intergenic 25.0%
! TTTCTAACTATGTCAGATAT+TGG - Chr6:12709176-12709195 MsG0680031000.01.T01:intron 25.0%
!! AGTTCAAATAATCATTGACT+TGG - Chr6:12711909-12711928 MsG0680031000.01.T01:intron 25.0%
!! ATGGGTTAATTAATGTACAA+TGG - Chr6:12712554-12712573 MsG0680031000.01.T01:CDS 25.0%
!! TCCATAGATTTTAGATTAGA+CGG + Chr6:12706762-12706781 None:intergenic 25.0%
!! TGTCAATCCTTCAAAATTTT+CGG + Chr6:12709405-12709424 None:intergenic 25.0%
!! TTTTGTCTGTATGAAGATAT+TGG - Chr6:12712095-12712114 MsG0680031000.01.T01:intron 25.0%
!!! ACATTTTGCTAGTTTTTGAT+TGG + Chr6:12706848-12706867 None:intergenic 25.0%
!!! ACCAATTTTTTCAATCAACT+CGG - Chr6:12706974-12706993 MsG0680031000.01.T01:intron 25.0%
!!! ATAATGATTTGGTGTTAAAG+TGG - Chr6:12711016-12711035 MsG0680031000.01.T01:intron 25.0%
!!! ATTATTACCCCTTCTTATTT+TGG + Chr6:12707081-12707100 None:intergenic 25.0%
!!! ATTTGTTGACTCATTTTTAC+TGG - Chr6:12707608-12707627 MsG0680031000.01.T01:intron 25.0%
!!! CTAATTTTTTCTGACTCAAT+TGG - Chr6:12711535-12711554 MsG0680031000.01.T01:intron 25.0%
!!! GGTTGTTAAAACATTGATTT+TGG - Chr6:12708065-12708084 MsG0680031000.01.T01:intron 25.0%
!!! GTGATTTTTTCTGCTTTATA+AGG - Chr6:12708143-12708162 MsG0680031000.01.T01:CDS 25.0%
!!! TGATAATGGTTATTATAAGG+TGG - Chr6:12707659-12707678 MsG0680031000.01.T01:intron 25.0%
!!! TGATAATTTTTACATTGGCT+TGG - Chr6:12706368-12706387 MsG0680031000.01.T01:three_prime_UTR 25.0%
AATAAGCATATAAGAAGCGA+TGG + Chr6:12709917-12709936 None:intergenic 30.0%
AATCTCTGTAACCGTAATTA+CGG - Chr6:12707857-12707876 MsG0680031000.01.T01:intron 30.0%
ACATACACGTGAACATAATA+AGG + Chr6:12708612-12708631 None:intergenic 30.0%
ACGTGAACATAATAAGGATA+AGG + Chr6:12708606-12708625 None:intergenic 30.0%
ACTGCTTGAAATACATGAAT+TGG - Chr6:12710560-12710579 MsG0680031000.01.T01:intron 30.0%
AGAAATTCCATCCATTTACA+CGG + Chr6:12706799-12706818 None:intergenic 30.0%
AGACTTGTAATCCTATTGTT+TGG + Chr6:12709777-12709796 None:intergenic 30.0%
AGCGCTATAAAAAATGTTGA+TGG + Chr6:12708557-12708576 None:intergenic 30.0%
AGTCAGAAAAAATTAGGAGT+TGG + Chr6:12711531-12711550 None:intergenic 30.0%
ATATTGGCAGTAAACAAATC+GGG - Chr6:12712111-12712130 MsG0680031000.01.T01:intron 30.0%
ATCAGATATATGAGCTACTT+TGG + Chr6:12710429-12710448 None:intergenic 30.0%
ATGAAATCGGAAATGAAGAA+AGG + Chr6:12707458-12707477 None:intergenic 30.0%
ATGTTCAAATAATCTGTGGA+AGG - Chr6:12708492-12708511 MsG0680031000.01.T01:intron 30.0%
ATTGGATCCAAAATAAGAAG+GGG - Chr6:12707071-12707090 MsG0680031000.01.T01:intron 30.0%
CAATTGTATTTACTTTAGCC+CGG - Chr6:12711502-12711521 MsG0680031000.01.T01:intron 30.0%
CGAACTCAATTTACATAGTT+TGG + Chr6:12712304-12712323 None:intergenic 30.0%
CTCTTCCCTATGATAATTAA+GGG - Chr6:12707300-12707319 MsG0680031000.01.T01:intron 30.0%
CTGAAAATCATTCAACGTTA+AGG + Chr6:12709941-12709960 None:intergenic 30.0%
GAATAACTCATTACATGATC+TGG + Chr6:12710519-12710538 None:intergenic 30.0%
GATATTGGCAGTAAACAAAT+CGG - Chr6:12712110-12712129 MsG0680031000.01.T01:intron 30.0%
GGGCTAAAGTAAATACAATT+GGG + Chr6:12711503-12711522 None:intergenic 30.0%
GTTAATTAATGTACAATGGG+AGG - Chr6:12712558-12712577 MsG0680031000.01.T01:intron 30.0%
GTTTACTTTCGAACACTATT+TGG - Chr6:12709275-12709294 MsG0680031000.01.T01:intron 30.0%
TAACCGACTATGAAAAATAG+TGG + Chr6:12706902-12706921 None:intergenic 30.0%
TACAATAAAAAAGGGAAGTG+GGG + Chr6:12708465-12708484 None:intergenic 30.0%
TAGTGCCTGAATCAAAATAA+GGG + Chr6:12709303-12709322 None:intergenic 30.0%
TATAGGAATTGGATATCTTG+CGG - Chr6:12706643-12706662 MsG0680031000.01.T01:three_prime_UTR 30.0%
TCAGGAAATAATCATTGGAT+TGG - Chr6:12712436-12712455 MsG0680031000.01.T01:intron 30.0%
TCTCTTCCCTATGATAATTA+AGG - Chr6:12707299-12707318 MsG0680031000.01.T01:intron 30.0%
TGATATAGAATGAACTAAGG+AGG + Chr6:12707004-12707023 None:intergenic 30.0%
TGTTAAAGAATTGATCAGTG+AGG - Chr6:12711607-12711626 MsG0680031000.01.T01:CDS 30.0%
TTATATGTTCAAATCATCCG+TGG - Chr6:12708276-12708295 MsG0680031000.01.T01:intron 30.0%
TTCAATTGGTTGAAGTTGAA+CGG - Chr6:12707935-12707954 MsG0680031000.01.T01:intron 30.0%
! AAAGGTGTATATAGAGGATT+AGG - Chr6:12711638-12711657 MsG0680031000.01.T01:CDS 30.0%
! AATTGATTCTGTTTGGATTG+AGG - Chr6:12706503-12706522 MsG0680031000.01.T01:three_prime_UTR 30.0%
! ACCGTCTAATCTAAAATCTA+TGG - Chr6:12706758-12706777 MsG0680031000.01.T01:CDS 30.0%
! ACTATGAAAAATAGTGGAAG+TGG + Chr6:12706896-12706915 None:intergenic 30.0%
! CTTTATTTCCAAACATAAGG+TGG - Chr6:12709446-12709465 MsG0680031000.01.T01:intron 30.0%
! GCACTTTATTTCCAAACATA+AGG - Chr6:12709443-12709462 MsG0680031000.01.T01:intron 30.0%
! GTAAATTGAGTTCGTTTTGT+GGG - Chr6:12712310-12712329 MsG0680031000.01.T01:intron 30.0%
! TAAACTATCTGAAACTACAC+AGG - Chr6:12708926-12708945 MsG0680031000.01.T01:CDS 30.0%
! TATCCTTCTGTTTGATAGTT+GGG - Chr6:12709334-12709353 MsG0680031000.01.T01:intron 30.0%
! TGTAAATTGAGTTCGTTTTG+TGG - Chr6:12712309-12712328 MsG0680031000.01.T01:intron 30.0%
! TTATCCTTCTGTTTGATAGT+TGG - Chr6:12709333-12709352 MsG0680031000.01.T01:intron 30.0%
!! AAATCCAATGTTCAAGTTGT+AGG + Chr6:12712376-12712395 None:intergenic 30.0%
!! AATTCGTTCAAGGTTTTGAT+AGG + Chr6:12710634-12710653 None:intergenic 30.0%
!! AGAATGATGATGCATCATTT+TGG + Chr6:12706598-12706617 None:intergenic 30.0%
!! ATTGATTTTGGGTAAGTATG+TGG - Chr6:12708077-12708096 MsG0680031000.01.T01:intron 30.0%
!! CTTCCACTATTTTTCATAGT+CGG - Chr6:12706896-12706915 MsG0680031000.01.T01:intron 30.0%
!! GAATGATGATGCATCATTTT+GGG + Chr6:12706597-12706616 None:intergenic 30.0%
!! GCTATTCTAACTGATTTTTC+AGG - Chr6:12712418-12712437 MsG0680031000.01.T01:intron 30.0%
!! GTTTGGATTAGCTATTATGA+AGG + Chr6:12709760-12709779 None:intergenic 30.0%
!! TTTTAACTAGCAAGCGTTTT+CGG - Chr6:12709476-12709495 MsG0680031000.01.T01:intron 30.0%
!!! GATGAGTTGATTTTGGATAA+TGG - Chr6:12712332-12712351 MsG0680031000.01.T01:intron 30.0%
AAAACAATCTTTGGCAGACT+AGG + Chr6:12710838-12710857 None:intergenic 35.0%
AAAGAATTGATCAGTGAGGA+TGG - Chr6:12711611-12711630 MsG0680031000.01.T01:CDS 35.0%
AAAGGATTACTCAAGACAGA+TGG - Chr6:12708783-12708802 MsG0680031000.01.T01:intron 35.0%
AAATGGTTCAAGCATCTTGA+AGG + Chr6:12708907-12708926 None:intergenic 35.0%
AACCAAACCGTATATAGTGA+CGG + Chr6:12707965-12707984 None:intergenic 35.0%
AACGGGCATAAATGATCATA+AGG + Chr6:12709632-12709651 None:intergenic 35.0%
AATGAGTTATTCAGCCTCAA+AGG - Chr6:12710527-12710546 MsG0680031000.01.T01:intron 35.0%
AATTATCGTACCACGTCAAT+TGG + Chr6:12709014-12709033 None:intergenic 35.0%
ACAGAATACCACCTTATGTT+TGG + Chr6:12709457-12709476 None:intergenic 35.0%
ACAGACAACTAAGACTCTAA+CGG + Chr6:12706404-12706423 None:intergenic 35.0%
AGAAGAAAACAGTTGTCTAC+AGG + Chr6:12711318-12711337 None:intergenic 35.0%
AGTGGAGTACAAAGTTATAC+AGG + Chr6:12710340-12710359 None:intergenic 35.0%
ATATCTCAGAACCACAAAAC+TGG + Chr6:12711963-12711982 None:intergenic 35.0%
ATTCCGTCTATTAAACTGCT+AGG - Chr6:12710232-12710251 MsG0680031000.01.T01:CDS 35.0%
CAGTGTAATTCAATCCTTTG+AGG + Chr6:12710544-12710563 None:intergenic 35.0%
CATTCCGTCCAATTTCAAAT+GGG - Chr6:12706691-12706710 MsG0680031000.01.T01:three_prime_UTR 35.0%
CATTGGATACAATCAAGACT+CGG - Chr6:12710914-12710933 MsG0680031000.01.T01:intron 35.0%
CGGGCTAAAGTAAATACAAT+TGG + Chr6:12711504-12711523 None:intergenic 35.0%
CTAGTGCCTGAATCAAAATA+AGG + Chr6:12709304-12709323 None:intergenic 35.0%
GAAGAAAACAGTTGTCTACA+GGG + Chr6:12711317-12711336 None:intergenic 35.0%
GACGGTTCATATTTCAAACA+CGG + Chr6:12706744-12706763 None:intergenic 35.0%
GATTGGTATATTTATGGACC+TGG + Chr6:12706831-12706850 None:intergenic 35.0%
GCGCATATTTATTGCAATTG+TGG - Chr6:12708102-12708121 MsG0680031000.01.T01:CDS 35.0%
GGGTTGAAAACAAATTGCAT+TGG - Chr6:12708527-12708546 MsG0680031000.01.T01:intron 35.0%
TAACAACAACCAACAAGGTT+AGG + Chr6:12710951-12710970 None:intergenic 35.0%
TAGTGGAAGTGGAGATAAAA+GGG + Chr6:12706885-12706904 None:intergenic 35.0%
TATCACGGTGAGAATATATC+AGG + Chr6:12707168-12707187 None:intergenic 35.0%
TATCTCAGAACCACAAAACT+GGG + Chr6:12711962-12711981 None:intergenic 35.0%
TCCTCGCGTTAAAATAAGAA+GGG - Chr6:12707111-12707130 MsG0680031000.01.T01:intron 35.0%
TCTGATTTCGTTGTATTCCA+AGG - Chr6:12710443-12710462 MsG0680031000.01.T01:intron 35.0%
TGATTCTCTTAATGTGGTCA+AGG - Chr6:12706326-12706345 MsG0680031000.01.T01:three_prime_UTR 35.0%
TGTTAAAGTGACAACTGCAT+TGG - Chr6:12711121-12711140 MsG0680031000.01.T01:intron 35.0%
TTTCGAAACATTGTTGTGGA+AGG - Chr6:12706303-12706322 MsG0680031000.01.T01:three_prime_UTR 35.0%
! AAAAATTAGGAGTTGGTTGC+CGG + Chr6:12711524-12711543 None:intergenic 35.0%
! ACAATTTTCCGCCGTAATTA+CGG + Chr6:12707871-12707890 None:intergenic 35.0%
! AGAATATTCACTGGTTGCTT+TGG - Chr6:12710772-12710791 MsG0680031000.01.T01:intron 35.0%
! ATAGTGGAAGTGGAGATAAA+AGG + Chr6:12706886-12706905 None:intergenic 35.0%
! ATCCTTCTGTTTGATAGTTG+GGG - Chr6:12709335-12709354 MsG0680031000.01.T01:intron 35.0%
! ATGGGGTACTTCAATGATAT+TGG - Chr6:12711685-12711704 MsG0680031000.01.T01:CDS 35.0%
! CTCATTCACCCATTTGAAAT+TGG + Chr6:12706702-12706721 None:intergenic 35.0%
! GCATTCGTGGTTTGTATAAA+GGG - Chr6:12708805-12708824 MsG0680031000.01.T01:intron 35.0%
! TAGTCTGCCAAAGATTGTTT+TGG - Chr6:12710837-12710856 MsG0680031000.01.T01:intron 35.0%
! TCAAAATTTTCGGATGCACA+AGG + Chr6:12709395-12709414 None:intergenic 35.0%
! TCAACTGATTAGCCAAGATA+TGG - Chr6:12712276-12712295 MsG0680031000.01.T01:intron 35.0%
! TCAGATTAGCCAAAAGTTGA+TGG - Chr6:12709957-12709976 MsG0680031000.01.T01:intron 35.0%
! TGTGCATCCGAAAATTTTGA+AGG - Chr6:12709395-12709414 MsG0680031000.01.T01:intron 35.0%
! TTAAACGTCAGAGTACTTGA+AGG - Chr6:12706919-12706938 MsG0680031000.01.T01:intron 35.0%
! TTCACCCATTTGAAATTGGA+CGG + Chr6:12706698-12706717 None:intergenic 35.0%
! TTCACGTGTATGTTTTCTGT+AGG - Chr6:12708619-12708638 MsG0680031000.01.T01:intron 35.0%
! TTTTTCCCTGTCTTTCATCA+TGG - Chr6:12709589-12709608 MsG0680031000.01.T01:intron 35.0%
!! ATGTTGCTCGTAAGTTGATA+AGG - Chr6:12710022-12710041 MsG0680031000.01.T01:CDS 35.0%
!! GCCGAGTTGATTGAAAAAAT+TGG + Chr6:12706978-12706997 None:intergenic 35.0%
!! TATATACGGTTTGGTTATCG+TGG - Chr6:12707969-12707988 MsG0680031000.01.T01:intron 35.0%
!! TTTTGATTCAGGCACTAGTT+TGG - Chr6:12709306-12709325 MsG0680031000.01.T01:intron 35.0%
!!! GTTTTAAAAATCGAGCCGAA+TGG - Chr6:12707907-12707926 MsG0680031000.01.T01:intron 35.0%
!!! TTTGTGGGATGAGTTGATTT+TGG - Chr6:12712325-12712344 MsG0680031000.01.T01:intron 35.0%
AAAAATCGAGCCGAATGGTA+GGG - Chr6:12707912-12707931 MsG0680031000.01.T01:intron 40.0%
AACCGTCACTATATACGGTT+TGG - Chr6:12707960-12707979 MsG0680031000.01.T01:intron 40.0%
AACTTTCCTCAGTTCAACAC+AGG + Chr6:12710588-12710607 None:intergenic 40.0%
AATTGATCAGTGAGGATGGT+TGG - Chr6:12711615-12711634 MsG0680031000.01.T01:CDS 40.0%
ACAAAAGACATGAGATCGAG+CGG - Chr6:12706562-12706581 MsG0680031000.01.T01:three_prime_UTR 40.0%
ACAGGTATTCCTAACCTTGT+TGG - Chr6:12710939-12710958 MsG0680031000.01.T01:intron 40.0%
ACATCAGAAGCAATACAAGG+AGG + Chr6:12706534-12706553 None:intergenic 40.0%
ACCAATTGAACCCTACCATT+CGG + Chr6:12707925-12707944 None:intergenic 40.0%
ACTCATTACATGATCTGGCA+AGG + Chr6:12710514-12710533 None:intergenic 40.0%
AGCACCACAAATCAGATTGT+AGG - Chr6:12710302-12710321 MsG0680031000.01.T01:CDS 40.0%
AGTGCATTGTCTGTTGTGAA+AGG - Chr6:12708765-12708784 MsG0680031000.01.T01:intron 40.0%
AGTGGAAGTGGAGATAAAAG+GGG + Chr6:12706884-12706903 None:intergenic 40.0%
AGTTGCCATGATGAAAGACA+GGG + Chr6:12709597-12709616 None:intergenic 40.0%
ATCGTGCATTACAACTCCAT+TGG - Chr6:12710897-12710916 MsG0680031000.01.T01:intron 40.0%
ATTTGTCAGCATGTCAGCAT+GGG - Chr6:12711667-12711686 MsG0680031000.01.T01:CDS 40.0%
CAAATGGCATAATAACCCAC+CGG + Chr6:12710258-12710277 None:intergenic 40.0%
CAACACAGACATGCAACAAA+TGG + Chr6:12710274-12710293 None:intergenic 40.0%
CCATTCCGTCCAATTTCAAA+TGG - Chr6:12706690-12706709 MsG0680031000.01.T01:three_prime_UTR 40.0%
CCTCGCGTTAAAATAAGAAG+GGG - Chr6:12707112-12707131 MsG0680031000.01.T01:intron 40.0%
CGAGTCTTGATTGTATCCAA+TGG + Chr6:12710916-12710935 None:intergenic 40.0%
CGGCAGATTGTCTGAATATA+AGG + Chr6:12712039-12712058 None:intergenic 40.0%
GATGACACCAAATCTGAGAA+AGG - Chr6:12710808-12710827 MsG0680031000.01.T01:intron 40.0%
GCCTGAACCAAAACAATCTT+TGG + Chr6:12710847-12710866 None:intergenic 40.0%
GGAAGGTGATTCTCTTAATG+TGG - Chr6:12706320-12706339 MsG0680031000.01.T01:three_prime_UTR 40.0%
GGCAGTGAGAAATATGATTC+TGG + Chr6:12708862-12708881 None:intergenic 40.0%
GTCCTCGCGTTAAAATAAGA+AGG - Chr6:12707110-12707129 MsG0680031000.01.T01:intron 40.0%
GTGAGAAATATGATTCTGGC+AGG + Chr6:12708858-12708877 None:intergenic 40.0%
TAAAAATCGAGCCGAATGGT+AGG - Chr6:12707911-12707930 MsG0680031000.01.T01:intron 40.0%
TAACAGATAGACCAAACCCT+CGG + Chr6:12710071-12710090 None:intergenic 40.0%
TAGTCTTCACAACAGAGACA+GGG + Chr6:12708710-12708729 None:intergenic 40.0%
TATTGCTTCTGATGTCGCAA+TGG - Chr6:12706539-12706558 MsG0680031000.01.T01:three_prime_UTR 40.0%
TCTCGGGTAAAATTCGTTCA+AGG + Chr6:12710644-12710663 None:intergenic 40.0%
TGATGAACCTAACTGGTTAG+TGG + Chr6:12710358-12710377 None:intergenic 40.0%
TGCTCCTACAACTTGAACAT+TGG - Chr6:12712369-12712388 MsG0680031000.01.T01:intron 40.0%
TGTGTTTGTTCCAATTGACG+TGG - Chr6:12709001-12709020 MsG0680031000.01.T01:CDS 40.0%
TGTTAAAGTGGCAACTGCAT+TGG - Chr6:12711028-12711047 MsG0680031000.01.T01:intron 40.0%
TTCCCCAACTATCAAACAGA+AGG + Chr6:12709340-12709359 None:intergenic 40.0%
TTGTACTCCACTAACCAGTT+AGG - Chr6:12710348-12710367 MsG0680031000.01.T01:CDS 40.0%
! AAAATTAGGAGTTGGTTGCC+GGG + Chr6:12711523-12711542 None:intergenic 40.0%
! AAATTCTATGTAGTGGGAGC+TGG - Chr6:12708654-12708673 MsG0680031000.01.T01:intron 40.0%
! ATACCTGTCCCAGTTGATTT+CGG + Chr6:12707425-12707444 None:intergenic 40.0%
! ATTACCACATCCCAGTTTTG+TGG - Chr6:12711949-12711968 MsG0680031000.01.T01:intron 40.0%
! CATAGTTTGGGACCATATCT+TGG + Chr6:12712291-12712310 None:intergenic 40.0%
! CCATTTGAAATTGGACGGAA+TGG + Chr6:12706693-12706712 None:intergenic 40.0%
! CGTGGTTTGTATAAAGGGTT+TGG - Chr6:12708810-12708829 MsG0680031000.01.T01:intron 40.0%
! GGCATTCGTGGTTTGTATAA+AGG - Chr6:12708804-12708823 MsG0680031000.01.T01:intron 40.0%
! GGGTTTTCGAAACATTGTTG+TGG - Chr6:12706299-12706318 MsG0680031000.01.T01:three_prime_UTR 40.0%
! GGTTGGAAAGGTGTATATAG+AGG - Chr6:12711632-12711651 MsG0680031000.01.T01:CDS 40.0%
! GTTTTCGGTCTATGTTGTCT+CGG - Chr6:12709491-12709510 MsG0680031000.01.T01:intron 40.0%
! TACAATCAAGACTCGGTTAC+AGG - Chr6:12710921-12710940 MsG0680031000.01.T01:intron 40.0%
! TTGTCGTTTCGAATGTGGAA+TGG + Chr6:12706947-12706966 None:intergenic 40.0%
!! AGGAGTACCTTTCTCAGATT+TGG + Chr6:12710818-12710837 None:intergenic 40.0%
!! ATATCAGGATTGATAACGCG+AGG + Chr6:12707153-12707172 None:intergenic 40.0%
!! CGCTGGATTGATGTTTTGTT+CGG - Chr6:12708044-12708063 MsG0680031000.01.T01:intron 40.0%
!! CGTAAGTTGATAAGGTCTGA+GGG - Chr6:12710030-12710049 MsG0680031000.01.T01:CDS 40.0%
!! CGTGGTACGATAATTTGTTC+TGG - Chr6:12709019-12709038 MsG0680031000.01.T01:CDS 40.0%
!! TCGTAAGTTGATAAGGTCTG+AGG - Chr6:12710029-12710048 MsG0680031000.01.T01:CDS 40.0%
!!! ACTCTTTTCGAGTGTTACTG+TGG - Chr6:12708677-12708696 MsG0680031000.01.T01:intron 40.0%
!!! AGGTAGTTTTGTCATGTCCT+TGG + Chr6:12710463-12710482 None:intergenic 40.0%
!!! CTCAACACACGCTTTTTCAA+TGG - Chr6:12707393-12707412 MsG0680031000.01.T01:CDS 40.0%
!!! GCCAAAGATTGTTTTGGTTC+AGG - Chr6:12710843-12710862 MsG0680031000.01.T01:intron 40.0%
!!! TGGCACCCTTATTTTGATTC+AGG - Chr6:12709295-12709314 MsG0680031000.01.T01:intron 40.0%
AATCAGATTGTAGGCGTGTC+TGG - Chr6:12710311-12710330 MsG0680031000.01.T01:CDS 45.0%
AGAACCACAAAACTGGGATG+TGG + Chr6:12711956-12711975 None:intergenic 45.0%
AGGATTGACAGCAACGATGT+AGG - Chr6:12709415-12709434 MsG0680031000.01.T01:intron 45.0%
ATCAGTGAGGATGGTTGGAA+AGG - Chr6:12711620-12711639 MsG0680031000.01.T01:CDS 45.0%
ATTCACCATCTAGCGCTGTT+TGG - Chr6:12710097-12710116 MsG0680031000.01.T01:CDS 45.0%
ATTGGTTACACCACAGGTGA+TGG - Chr6:12711553-12711572 MsG0680031000.01.T01:intron 45.0%
CAAAAGACATGAGATCGAGC+GGG - Chr6:12706563-12706582 MsG0680031000.01.T01:three_prime_UTR 45.0%
CAAGTCAACGCTTCTTATGG+AGG - Chr6:12710136-12710155 MsG0680031000.01.T01:CDS 45.0%
CACTACACCGTGTAAATGGA+TGG - Chr6:12706789-12706808 MsG0680031000.01.T01:CDS 45.0%
CAGTTGCCATGATGAAAGAC+AGG + Chr6:12709598-12709617 None:intergenic 45.0%
CATCCACTACACCGTGTAAA+TGG - Chr6:12706785-12706804 MsG0680031000.01.T01:CDS 45.0%
CATCCATTTACACGGTGTAG+TGG + Chr6:12706791-12706810 None:intergenic 45.0%
CATCCGTGGAAGCTAGATAT+TGG - Chr6:12708290-12708309 MsG0680031000.01.T01:intron 45.0%
CGGCCTAGCAGTTTAATAGA+CGG + Chr6:12710238-12710257 None:intergenic 45.0%
CGGTGAACCGTCACTATATA+CGG - Chr6:12707955-12707974 MsG0680031000.01.T01:intron 45.0%
CGTCTATTAAACTGCTAGGC+CGG - Chr6:12710236-12710255 MsG0680031000.01.T01:CDS 45.0%
CGTGGAAGCTAGATATTGGT+GGG - Chr6:12708294-12708313 MsG0680031000.01.T01:intron 45.0%
CTCTGTAACCGTAATTACGG+CGG - Chr6:12707860-12707879 MsG0680031000.01.T01:intron 45.0%
CTGTCTCTGTTGTGAAGACT+AGG - Chr6:12708709-12708728 MsG0680031000.01.T01:intron 45.0%
CTGTCTTTCATCATGGCAAC+TGG - Chr6:12709596-12709615 MsG0680031000.01.T01:intron 45.0%
CTGTGGAAGGTAGATCTTGT+GGG - Chr6:12708505-12708524 MsG0680031000.01.T01:intron 45.0%
CTTCTTATGGAGGTGAGACA+TGG - Chr6:12710146-12710165 MsG0680031000.01.T01:CDS 45.0%
GACTCAATTGGTTACACCAC+AGG - Chr6:12711547-12711566 MsG0680031000.01.T01:intron 45.0%
GATTTGTCAGCATGTCAGCA+TGG - Chr6:12711666-12711685 MsG0680031000.01.T01:CDS 45.0%
GCGACATCAGAAGCAATACA+AGG + Chr6:12706537-12706556 None:intergenic 45.0%
GCTCAAGTCAACGCTTCTTA+TGG - Chr6:12710133-12710152 MsG0680031000.01.T01:CDS 45.0%
GCTGACATGCTGACAAATCT+TGG + Chr6:12711665-12711684 None:intergenic 45.0%
GGAATTTCTACAGCGAATCC+AGG - Chr6:12706810-12706829 MsG0680031000.01.T01:intron 45.0%
GGTTGCTTCAAACCATACTG+CGG - Chr6:12708737-12708756 MsG0680031000.01.T01:intron 45.0%
GTGGAAGCTAGATATTGGTG+GGG - Chr6:12708295-12708314 MsG0680031000.01.T01:intron 45.0%
TATTAAACTGCTAGGCCGGT+GGG - Chr6:12710240-12710259 MsG0680031000.01.T01:CDS 45.0%
TCTATGTTGTCTCGGTTGCT+GGG - Chr6:12709499-12709518 MsG0680031000.01.T01:intron 45.0%
TCTGTGGAAGGTAGATCTTG+TGG - Chr6:12708504-12708523 MsG0680031000.01.T01:intron 45.0%
TGATAAGGTCTGAGGGAATC+CGG - Chr6:12710037-12710056 MsG0680031000.01.T01:CDS 45.0%
TGCCTTAGAGACCACAAAAG+TGG - Chr6:12708878-12708897 MsG0680031000.01.T01:intron 45.0%
TGTGGAAGGTAGATCTTGTG+GGG - Chr6:12708506-12708525 MsG0680031000.01.T01:intron 45.0%
TGTTGTGAAGACTAGGATGC+AGG - Chr6:12708716-12708735 MsG0680031000.01.T01:intron 45.0%
TTGGTACCTGTGTTGAACTG+AGG - Chr6:12710579-12710598 MsG0680031000.01.T01:intron 45.0%
TTGGTTACACCACAGGTGAT+GGG - Chr6:12711554-12711573 MsG0680031000.01.T01:intron 45.0%
TTTGTCAGCATGTCAGCATG+GGG - Chr6:12711668-12711687 MsG0680031000.01.T01:CDS 45.0%
! ACCCTTGCACCATCAACTTT+TGG + Chr6:12709969-12709988 None:intergenic 45.0%
! ACGCTTCATCTTTTGCGCAT+AGG + Chr6:12712233-12712252 None:intergenic 45.0%
! CACGCCTACAATCTGATTTG+TGG + Chr6:12710309-12710328 None:intergenic 45.0%
! CCACCAATATCTAGCTTCCA+CGG + Chr6:12708296-12708315 None:intergenic 45.0%
! CTAGTCTTCACAACAGAGAC+AGG + Chr6:12708711-12708730 None:intergenic 45.0%
! TACCTGTCCCAGTTGATTTC+GGG + Chr6:12707424-12707443 None:intergenic 45.0%
! TGATTCAGGCACTAGTTTGG+CGG - Chr6:12709309-12709328 MsG0680031000.01.T01:intron 45.0%
! TGCGCAAAAGATGAAGCGTT+TGG - Chr6:12712234-12712253 MsG0680031000.01.T01:intron 45.0%
!! AGCCAAAAGTTGATGGTGCA+AGG - Chr6:12709964-12709983 MsG0680031000.01.T01:intron 45.0%
!! GCATTGGTTTAGACCTGCAT+TGG - Chr6:12711137-12711156 MsG0680031000.01.T01:intron 45.0%
!! GCCAAAAGTTGATGGTGCAA+GGG - Chr6:12709965-12709984 MsG0680031000.01.T01:intron 45.0%
!!! AGCCACTTTTGTGGTCTCTA+AGG + Chr6:12708883-12708902 None:intergenic 45.0%
!!! ATTGTTTTGGTTCAGGCAGC+AGG - Chr6:12710850-12710869 MsG0680031000.01.T01:intron 45.0%
!!! CCCCTTCTTATTTTAACGCG+AGG + Chr6:12707115-12707134 None:intergenic 45.0%
!!! CTTGAAGGAAGCCACTTTTG+TGG + Chr6:12708892-12708911 None:intergenic 45.0%
!!! TTGTTTTGGTTCAGGCAGCA+GGG - Chr6:12710851-12710870 MsG0680031000.01.T01:intron 45.0%
!! GTTAAAAAAAAAAAAAAAAT+TGG - Chr6:12709064-12709083 MsG0680031000.01.T01:intron 5.0%
ACAGTCTAATCGTGCCACGT+AGG - Chr6:12708018-12708037 MsG0680031000.01.T01:intron 50.0%
ACCATCTAGCGCTGTTTGGT+GGG - Chr6:12710101-12710120 MsG0680031000.01.T01:CDS 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + Chr6:12711058-12711077 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+GGG + Chr6:12711058-12711077 None:intergenic 50.0%
AGAGAGAGAGGAGAGAGAGA+GGG + Chr6:12711219-12711238 None:intergenic 50.0%
AGGGAGGTCTAAACCAATGC+AGG + Chr6:12711153-12711172 None:intergenic 50.0%
ATAAGGTCTGAGGGAATCCG+GGG - Chr6:12710039-12710058 MsG0680031000.01.T01:CDS 50.0%
ATCCAAGCCCCCACTATACT+GGG + Chr6:12710004-12710023 None:intergenic 50.0%
ATGCACTTCTCTCCGCAGTA+TGG + Chr6:12708752-12708771 None:intergenic 50.0%
CCGTGGAAGCTAGATATTGG+TGG - Chr6:12708293-12708312 MsG0680031000.01.T01:intron 50.0%
CTATTAAACTGCTAGGCCGG+TGG - Chr6:12710239-12710258 MsG0680031000.01.T01:CDS 50.0%
CTCAAGACAGATGGCATTCG+TGG - Chr6:12708792-12708811 MsG0680031000.01.T01:intron 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + Chr6:12711059-12711078 None:intergenic 50.0%
GATAAGGTCTGAGGGAATCC+GGG - Chr6:12710038-12710057 MsG0680031000.01.T01:CDS 50.0%
GATTCTGGCAGGAATTGCTC+CGG + Chr6:12708847-12708866 None:intergenic 50.0%
GCCGAATGGTAGGGTTCAAT+TGG - Chr6:12707921-12707940 MsG0680031000.01.T01:intron 50.0%
GTCTATGTTGTCTCGGTTGC+TGG - Chr6:12709498-12709517 MsG0680031000.01.T01:intron 50.0%
GTGGAAGGTAGATCTTGTGG+GGG - Chr6:12708507-12708526 MsG0680031000.01.T01:intron 50.0%
GTTTCTCACGTGCGAAGAGT+TGG - Chr6:12706438-12706457 MsG0680031000.01.T01:three_prime_UTR 50.0%
TCAATCCAGCGAAACCTACG+TGG + Chr6:12708035-12708054 None:intergenic 50.0%
TTTCCATGTCCCATCACCTG+TGG + Chr6:12711566-12711585 None:intergenic 50.0%
! GAAGCGTTTGGTCAGCAATC+TGG - Chr6:12712246-12712265 MsG0680031000.01.T01:intron 50.0%
! GCGCTTTGTCGTTTCGAATG+TGG + Chr6:12706952-12706971 None:intergenic 50.0%
! GCTGTTTGGTGGGCAAGTTA+CGG - Chr6:12710111-12710130 MsG0680031000.01.T01:CDS 50.0%
!! TCACGTGCGAAGAGTTGGTA+AGG - Chr6:12706443-12706462 MsG0680031000.01.T01:three_prime_UTR 50.0%
!! TTGATGGTGCAAGGGTACTC+AGG - Chr6:12709973-12709992 MsG0680031000.01.T01:intron 50.0%
!!! TGTTTTGGTTCAGGCAGCAG+GGG - Chr6:12710852-12710871 MsG0680031000.01.T01:intron 50.0%
AAGACATGAGATCGAGCGGG+AGG - Chr6:12706566-12706585 MsG0680031000.01.T01:three_prime_UTR 55.0%
ACACAGGCTGCCATAGCGAA+TGG - Chr6:12708942-12708961 MsG0680031000.01.T01:CDS 55.0%
AGAGAGAGGGAGAGAGAGAG+AGG + Chr6:12711231-12711250 None:intergenic 55.0%
AGGCCATGCCCAGTATAGTG+GGG - Chr6:12709993-12710012 MsG0680031000.01.T01:intron 55.0%
CAAACCCTCGGTATAACCCC+CGG + Chr6:12710059-12710078 None:intergenic 55.0%
CACCATCTAGCGCTGTTTGG+TGG - Chr6:12710100-12710119 MsG0680031000.01.T01:CDS 55.0%
CAGGCCATGCCCAGTATAGT+GGG - Chr6:12709992-12710011 MsG0680031000.01.T01:intron 55.0%
CATCCAAGCCCCCACTATAC+TGG + Chr6:12710005-12710024 None:intergenic 55.0%
CTCCCGAAATCAACTGGGAC+AGG - Chr6:12707419-12707438 MsG0680031000.01.T01:CDS 55.0%
GAATCCGGGGGTTATACCGA+GGG - Chr6:12710052-12710071 MsG0680031000.01.T01:CDS 55.0%
GAGAGAGAGAGAGAGAGAGG+GGG + Chr6:12711057-12711076 None:intergenic 55.0%
GAGAGAGAGAGGAGAGAGAG+AGG + Chr6:12711220-12711239 None:intergenic 55.0%
GAGAGAGAGGAGAGAGAGAG+AGG + Chr6:12711218-12711237 None:intergenic 55.0%
GCCACCAATGCCATTCGCTA+TGG + Chr6:12708955-12708974 None:intergenic 55.0%
GCTGCCATAGCGAATGGCAT+TGG - Chr6:12708948-12708967 MsG0680031000.01.T01:CDS 55.0%
GGAGAGAGAGAGAGAGAGAG+AGG + Chr6:12711210-12711229 None:intergenic 55.0%
GGCTGCTCCCGAAATCAACT+GGG - Chr6:12707414-12707433 MsG0680031000.01.T01:CDS 55.0%
TAAGGTCTGAGGGAATCCGG+GGG - Chr6:12710040-12710059 MsG0680031000.01.T01:CDS 55.0%
TCAGGCCATGCCCAGTATAG+TGG - Chr6:12709991-12710010 MsG0680031000.01.T01:intron 55.0%
TGGCTGCTCCCGAAATCAAC+TGG - Chr6:12707413-12707432 MsG0680031000.01.T01:CDS 55.0%
! GCCATAGCGAATGGCATTGG+TGG - Chr6:12708951-12708970 MsG0680031000.01.T01:CDS 55.0%
!! ACACCACAGGTGATGGGACA+TGG - Chr6:12711560-12711579 MsG0680031000.01.T01:intron 55.0%
!! GCAGCAGGGGGTATTATTGC+TGG - Chr6:12710865-12710884 MsG0680031000.01.T01:intron 55.0%
!!! GTTTTGGTTCAGGCAGCAGG+GGG - Chr6:12710853-12710872 MsG0680031000.01.T01:intron 55.0%
AGAGAGAGAGAGAGAGGGGG+AGG + Chr6:12711204-12711223 None:intergenic 60.0%
AGCCCCCACTATACTGGGCA+TGG + Chr6:12709999-12710018 None:intergenic 60.0%
CGGGGGTTATACCGAGGGTT+TGG - Chr6:12710057-12710076 MsG0680031000.01.T01:CDS 60.0%
GAGAGAGAGAGAGAGGGGGA+GGG + Chr6:12711203-12711222 None:intergenic 60.0%
GCCCACCAAACAGCGCTAGA+TGG + Chr6:12710105-12710124 None:intergenic 60.0%
GGAATCCGGGGGTTATACCG+AGG - Chr6:12710051-12710070 MsG0680031000.01.T01:CDS 60.0%
GGCAGGAATTGCTCCGGTGA+CGG + Chr6:12708841-12708860 None:intergenic 60.0%
GGCCATGCCCAGTATAGTGG+GGG - Chr6:12709994-12710013 MsG0680031000.01.T01:intron 60.0%
TCGTGCCACGTAGGTTTCGC+TGG - Chr6:12708027-12708046 MsG0680031000.01.T01:intron 60.0%
! TGCCCAGTATAGTGGGGGCT+TGG - Chr6:12709999-12710018 MsG0680031000.01.T01:intron 60.0%
AGAGAGAGAGAGGGGGAGGG+AGG + Chr6:12711200-12711219 None:intergenic 65.0%
GAGAGAGAGAGGGGGAGGGA+GGG + Chr6:12711199-12711218 None:intergenic 65.0%
GGGTTTGGCACTGCCGTCAC+CGG - Chr6:12708825-12708844 MsG0680031000.01.T01:intron 65.0%
AGAGAGAGGGGGAGGGAGGG+AGG + Chr6:12711196-12711215 None:intergenic 70.0%
AGAGAGGGGGAGGGAGGGAG+GGG + Chr6:12711194-12711213 None:intergenic 70.0%
GAGAGAGGGGGAGGGAGGGA+GGG + Chr6:12711195-12711214 None:intergenic 70.0%
AGGGAGGGAGGGGAGGGGGA+GGG + Chr6:12711184-12711203 None:intergenic 75.0%
AGGGGGAGGGAGGGAGGGGA+GGG + Chr6:12711190-12711209 None:intergenic 75.0%
GAGGGGGAGGGGGAGGGAGA+GGG + Chr6:12711172-12711191 None:intergenic 75.0%
! GAGGGAGGGAGGGGAGGGGG+AGG + Chr6:12711185-12711204 None:intergenic 80.0%
! GAGGGGGAGGGAGGGAGGGG+AGG + Chr6:12711191-12711210 None:intergenic 80.0%
! GGAGGGAGGGGAGGGGGAGG+GGG + Chr6:12711182-12711201 None:intergenic 80.0%
! GGAGGGGAGGGGGAGGGGGA+GGG + Chr6:12711178-12711197 None:intergenic 80.0%
! GGAGGGGGAGGGGGAGGGAG+AGG + Chr6:12711173-12711192 None:intergenic 80.0%
! GGGAGGGAGGGGAGGGGGAG+GGG + Chr6:12711183-12711202 None:intergenic 80.0%
! GGGGAGGGAGGGAGGGGAGG+GGG + Chr6:12711188-12711207 None:intergenic 80.0%
! GGGGAGGGGGAGGGAGAGGG+AGG + Chr6:12711169-12711188 None:intergenic 80.0%
! GGGGGAGGGAGGGAGGGGAG+GGG + Chr6:12711189-12711208 None:intergenic 80.0%
! GGGAGGGGAGGGGGAGGGGG+AGG + Chr6:12711179-12711198 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr6 gene 12706297 12712744 12706297 ID=MsG0680031000.01;Name=MsG0680031000.01
Chr6 mRNA 12706297 12712744 12706297 ID=MsG0680031000.01.T01;Parent=MsG0680031000.01;Name=MsG0680031000.01.T01;_AED=0.42;_eAED=0.66;_QI=0|0.36|0.33|0.91|0.81|0.83|12|457|441
Chr6 exon 12706297 12706815 12706297 ID=MsG0680031000.01.T01:exon:9059;Parent=MsG0680031000.01.T01
Chr6 exon 12707319 12707472 12707319 ID=MsG0680031000.01.T01:exon:9058;Parent=MsG0680031000.01.T01
Chr6 exon 12708099 12708243 12708099 ID=MsG0680031000.01.T01:exon:9057;Parent=MsG0680031000.01.T01
Chr6 exon 12708884 12709080 12708884 ID=MsG0680031000.01.T01:exon:9056;Parent=MsG0680031000.01.T01
Chr6 exon 12710019 12710450 12710019 ID=MsG0680031000.01.T01:exon:9055;Parent=MsG0680031000.01.T01
Chr6 exon 12711601 12711720 12711601 ID=MsG0680031000.01.T01:exon:9054;Parent=MsG0680031000.01.T01
Chr6 exon 12712454 12712576 12712454 ID=MsG0680031000.01.T01:exon:9053;Parent=MsG0680031000.01.T01
Chr6 exon 12712652 12712744 12712652 ID=MsG0680031000.01.T01:exon:9052;Parent=MsG0680031000.01.T01
Chr6 CDS 12712652 12712744 12712652 ID=MsG0680031000.01.T01:cds;Parent=MsG0680031000.01.T01
Chr6 CDS 12712454 12712576 12712454 ID=MsG0680031000.01.T01:cds;Parent=MsG0680031000.01.T01
Chr6 CDS 12711601 12711720 12711601 ID=MsG0680031000.01.T01:cds;Parent=MsG0680031000.01.T01
Chr6 CDS 12710019 12710450 12710019 ID=MsG0680031000.01.T01:cds;Parent=MsG0680031000.01.T01
Chr6 CDS 12708884 12709080 12708884 ID=MsG0680031000.01.T01:cds;Parent=MsG0680031000.01.T01
Chr6 CDS 12708099 12708243 12708099 ID=MsG0680031000.01.T01:cds;Parent=MsG0680031000.01.T01
Chr6 CDS 12707319 12707472 12707319 ID=MsG0680031000.01.T01:cds;Parent=MsG0680031000.01.T01
Chr6 CDS 12706754 12706815 12706754 ID=MsG0680031000.01.T01:cds;Parent=MsG0680031000.01.T01
Chr6 three_prime_UTR 12706297 12706753 12706297 ID=MsG0680031000.01.T01:three_prime_utr;Parent=MsG0680031000.01.T01
Gene Sequence

>MsG0680031000.01.T01

ATGGGTTTTCGAAACATTGTTGTGGAAGGTGATTCTCTTAATGTGGTCAAGGCTTTGAAGTCACCTATCGATGATAATTTTTACATTGGCTTGGTTATTGCTCATTCTCTAGCTAAGTTTGATTTAATTTCAATTGATTCTGTTTGGATTGAGGAAAATCCTCCTTGTATTGCTTCTGATGTCGCAATGGACAAAAGACATGAGATCGAGCGGGAGGGTTTAATAGTAATAGTTCTTCTTCTTGAACACGCAAATTCAATTCATAAACTCTTCAATTTTCTGCAAAATCTCAACACACGCTTTTTCAATGGCTGCTCCCGAAATCAACTGGGACAGCATTGTGAAGCTCCTTATCCTTATTATGTTCACGTGTATGTTTTCTGTAGGCTAGATAAAACAAAATTCTATGTAGTGGGAGCTGGACTCTTTTCGAGTGTTACTGTGGCACTCTACCCTGTCTCTGTTGTGAAGACTAGGATGCAGGTTGCTTCAAACCATACTGCGGAGAGAAGTGCATTGTCTGTTGTGAAAGGATTACTCAAGACAGATGGCATTCGTGGTTTGTATAAAGGGTTTGGCACTGCCGTCACCGGAGCAATTCCTGCCAGAATCATATTTCTCACTGCCTTAGAGACCACAAAAGTGGCTTCCTTCAAGATGCTTGAACCATTTAAACTATCTGAAACTACACAGGCTGCCATAGCGAATGGCATTGGTGGCATGACATCGTCGATCTGTGCACAAGCTGTGTTTGTTCCAATTGACGTGATTAGCCAAAAGTTGATGGTGCAAGGGTACTCAGGCCATGCCCAGTATAGTGGGGGCTTGGATGTTGCTCGTAAGTTGATAAGGTCTGAGGGAATCCGGGGGTTATACCGAGGGTTTGGTCTATCTGTTATGACTTATTCACCATCTAGCGCTGTTTGGTGGGCAAGTTACGGCTCAAGTCAACGCTTCTTATGGAGATTCTTAGAAGATGACACCAAATCTGAGAAAGGTACTCCTAGTCTGCCAAAGATTGTTTTGGTTCAGGCAGCAGGGGGTATTATTGCTGGTGCTACTGCATCGTGCATTACAACTCCATTGGATACAATCAAGACTCGGTTACAGGTGATGGGACATGGAAAGAAAAGCTCTGTTAAGCAAGTTGTTAAAGAATTGATCAGTGAGGATGGTTGGAAAGGTGTATATAGAGGATTAGGTCCAAGATTTGTCAGCATGTCAGCATGGGGTACTTCAATGATATTGGCTTATGAATATCTGAAGCGCCTATGCGCAAAAGATGAAGCGTTTGGTCAGCAATCTGGTATTGTTTCAACTGATTAG

Protein sequence

>MsG0680031000.01.T01

MGFRNIVVEGDSLNVVKALKSPIDDNFYIGLVIAHSLAKFDLISIDSVWIEENPPCIASDVAMDKRHEIEREGLIVIVLLLEHANSIHKLFNFLQNLNTRFFNGCSRNQLGQHCEAPYPYYVHVYVFCRLDKTKFYVVGAGLFSSVTVALYPVSVVKTRMQVASNHTAERSALSVVKGLLKTDGIRGLYKGFGTAVTGAIPARIIFLTALETTKVASFKMLEPFKLSETTQAAIANGIGGMTSSICAQAVFVPIDVISQKLMVQGYSGHAQYSGGLDVARKLIRSEGIRGLYRGFGLSVMTYSPSSAVWWASYGSSQRFLWRFLEDDTKSEKGTPSLPKIVLVQAAGGIIAGATASCITTPLDTIKTRLQVMGHGKKSSVKQVVKELISEDGWKGVYRGLGPRFVSMSAWGTSMILAYEYLKRLCAKDEAFGQQSGIVSTD*