Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080049011.01.T01 | XP_003592342.3 | 95.455 | 286 | 11 | 2 | 1 | 286 | 1 | 284 | 0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047791.01 | MsG0080049011.01 | 0.803767 | 2.979517e-49 | 1.509981e-46 |
| MsG0080048849.01 | MsG0080049011.01 | 0.830660 | 2.591327e-55 | 2.748031e-52 |
| MsG0080048878.01 | MsG0080049011.01 | 0.840923 | 6.490438e-58 | 9.385323e-55 |
| MsG0080049011.01 | MsG0080049069.01 | 0.830419 | 2.968035e-55 | 3.125288e-52 |
| MsG0080049011.01 | MsG0080049147.01 | 0.804933 | 1.702809e-49 | 8.893228e-47 |
| MsG0080049011.01 | MsG0180000026.01 | 0.844601 | 6.833579e-59 | 1.108927e-55 |
| MsG0080049011.01 | MsG0180000355.01 | 0.828846 | 7.163533e-55 | 7.204434e-52 |
| MsG0080049011.01 | MsG0180000482.01 | 0.814908 | 1.212304e-51 | 8.237781e-49 |
| MsG0080049011.01 | MsG0180000544.01 | -0.804272 | 2.339696e-49 | 1.201172e-46 |
| MsG0080049011.01 | MsG0180000568.01 | 0.820390 | 7.036272e-53 | 5.560355e-50 |
| MsG0080049011.01 | MsG0180000599.01 | 0.802822 | 4.675151e-49 | 2.312775e-46 |
| MsG0080049011.01 | MsG0180000785.01 | 0.801489 | 8.788099e-49 | 4.202352e-46 |
| MsG0080049011.01 | MsG0180001118.01 | 0.832803 | 7.673651e-56 | 8.670422e-53 |
| MsG0080049011.01 | MsG0180002184.01 | 0.848245 | 6.932615e-60 | 1.264226e-56 |
| MsG0080049011.01 | MsG0180002700.01 | 0.809513 | 1.823356e-50 | 1.072672e-47 |
| MsG0080049011.01 | MsG0180003189.01 | 0.844949 | 5.507867e-59 | 9.036412e-56 |
| MsG0080049011.01 | MsG0180003353.01 | 0.807079 | 6.021738e-50 | 3.322752e-47 |
| MsG0080049011.01 | MsG0180003357.01 | 0.809490 | 1.844605e-50 | 1.084487e-47 |
| MsG0080049011.01 | MsG0180003697.01 | 0.820139 | 8.031676e-53 | 6.303201e-50 |
| MsG0080049011.01 | MsG0180003821.01 | 0.876621 | 1.207064e-68 | 5.891651e-65 |
| MsG0080049011.01 | MsG0180004025.01 | 0.813624 | 2.330036e-51 | 1.529323e-48 |
| MsG0080049011.01 | MsG0180004365.01 | 0.818987 | 1.471247e-52 | 1.118246e-49 |
| MsG0080049011.01 | MsG0180004493.01 | 0.829281 | 5.621087e-55 | 5.727619e-52 |
| MsG0080049011.01 | MsG0180004750.01 | 0.810899 | 9.164221e-51 | 5.592716e-48 |
| MsG0080049011.01 | MsG0180005240.01 | 0.800197 | 1.613393e-48 | 7.466385e-46 |
| MsG0080049011.01 | MsG0180005418.01 | 0.802171 | 6.367733e-49 | 3.098038e-46 |
| MsG0080049011.01 | MsG0180005509.01 | 0.867461 | 1.345882e-65 | 4.703017e-62 |
| MsG0080049011.01 | MsG0180005787.01 | 0.833470 | 5.237170e-56 | 6.036821e-53 |
| MsG0080049011.01 | MsG0180005807.01 | 0.801460 | 8.911510e-49 | 4.258155e-46 |
| MsG0080049011.01 | MsG0180005913.01 | 0.846811 | 1.717822e-59 | 2.992575e-56 |
| MsG0080049011.01 | MsG0180006031.01 | 0.800244 | 1.578552e-48 | 7.313952e-46 |
| MsG0080049011.01 | MsG0180006104.01 | 0.804743 | 1.866111e-49 | 9.698409e-47 |
| MsG0080049011.01 | MsG0280006306.01 | -0.840346 | 9.189245e-58 | 1.305142e-54 |
| MsG0080049011.01 | MsG0280006634.01 | 0.811942 | 5.440006e-51 | 3.412556e-48 |
| MsG0080049011.01 | MsG0280006669.01 | 0.823131 | 1.634017e-53 | 1.394860e-50 |
| MsG0080049011.01 | MsG0280007165.01 | -0.823123 | 1.640436e-53 | 1.400060e-50 |
| MsG0080049011.01 | MsG0280007193.01 | -0.834893 | 2.303369e-56 | 2.770774e-53 |
| MsG0080049011.01 | MsG0280007575.01 | 0.809067 | 2.272506e-50 | 1.321103e-47 |
| MsG0080049011.01 | MsG0280007903.01 | 0.806578 | 7.686367e-50 | 4.186767e-47 |
| MsG0080049011.01 | MsG0280008098.01 | 0.839204 | 1.822239e-57 | 2.498499e-54 |
| MsG0080049011.01 | MsG0280008419.01 | 0.802789 | 4.748802e-49 | 2.347170e-46 |
| MsG0080049011.01 | MsG0280008429.01 | 0.844044 | 9.644971e-59 | 1.538189e-55 |
| MsG0080049011.01 | MsG0280008660.01 | -0.805403 | 1.357907e-49 | 7.177542e-47 |
| MsG0080049011.01 | MsG0280008928.01 | 0.866569 | 2.590027e-65 | 8.770049e-62 |
| MsG0080049011.01 | MsG0280008929.01 | 0.860885 | 1.511277e-63 | 4.194921e-60 |
| MsG0080049011.01 | MsG0280009350.01 | 0.815385 | 9.498837e-52 | 6.539477e-49 |
| MsG0080049011.01 | MsG0280009685.01 | 0.869230 | 3.616786e-66 | 1.347164e-62 |
| MsG0080049011.01 | MsG0280009708.01 | 0.807240 | 5.566839e-50 | 3.084794e-47 |
| MsG0080049011.01 | MsG0280010013.01 | 0.807851 | 4.129606e-50 | 2.324937e-47 |
| MsG0080049011.01 | MsG0280010271.01 | 0.802138 | 6.468583e-49 | 3.144451e-46 |
| MsG0080049011.01 | MsG0280010288.01 | 0.847788 | 9.262873e-60 | 1.664796e-56 |
| MsG0080049011.01 | MsG0280010564.01 | 0.831429 | 1.677370e-55 | 1.819718e-52 |
| MsG0080049011.01 | MsG0280011073.01 | 0.845016 | 5.280747e-59 | 8.682458e-56 |
| MsG0080049011.01 | MsG0280011287.01 | 0.823148 | 1.619212e-53 | 1.382887e-50 |
| MsG0080049011.01 | MsG0280011371.01 | 0.842005 | 3.367229e-58 | 5.036035e-55 |
| MsG0080049011.01 | MsG0380012570.01 | 0.827538 | 1.480441e-54 | 1.433322e-51 |
| MsG0080049011.01 | MsG0380012868.01 | 0.814702 | 1.346789e-51 | 9.101463e-49 |
| MsG0080049011.01 | MsG0380013467.01 | 0.818292 | 2.115389e-52 | 1.577031e-49 |
| MsG0080049011.01 | MsG0380015438.01 | 0.810765 | 9.793230e-51 | 5.955229e-48 |
| MsG0080049011.01 | MsG0380015847.01 | -0.826077 | 3.307059e-54 | 3.069532e-51 |
| MsG0080049011.01 | MsG0380015849.01 | -0.801251 | 9.832033e-49 | 4.673415e-46 |
| MsG0080049011.01 | MsG0380016194.01 | 0.809173 | 2.156696e-50 | 1.257363e-47 |
| MsG0080049011.01 | MsG0380016347.01 | -0.840147 | 1.035744e-57 | 1.462210e-54 |
| MsG0080049011.01 | MsG0380016560.01 | 0.800078 | 1.706367e-48 | 7.872940e-46 |
| MsG0080049011.01 | MsG0380016740.01 | 0.838798 | 2.321024e-57 | 3.143138e-54 |
| MsG0080049011.01 | MsG0380017023.01 | 0.854489 | 1.190075e-61 | 2.662272e-58 |
| MsG0080049011.01 | MsG0380017085.01 | 0.819238 | 1.290097e-52 | 9.872333e-50 |
| MsG0080049011.01 | MsG0380017293.01 | 0.809325 | 2.001279e-50 | 1.171485e-47 |
| MsG0080049011.01 | MsG0380017338.01 | 0.835718 | 1.425271e-56 | 1.757650e-53 |
| MsG0080049011.01 | MsG0380018022.01 | 0.813823 | 2.105610e-51 | 1.389483e-48 |
| MsG0080049011.01 | MsG0480018426.01 | 0.809102 | 2.233650e-50 | 1.299764e-47 |
| MsG0080049011.01 | MsG0480018847.01 | 0.810303 | 1.232667e-50 | 7.403586e-48 |
| MsG0080049011.01 | MsG0480018850.01 | 0.835915 | 1.270328e-56 | 1.575810e-53 |
| MsG0080049011.01 | MsG0480018911.01 | 0.857458 | 1.609634e-62 | 3.975629e-59 |
| MsG0080049011.01 | MsG0480019007.01 | 0.833015 | 6.797538e-56 | 7.730098e-53 |
| MsG0080049011.01 | MsG0480019148.01 | 0.809978 | 1.448053e-50 | 8.624469e-48 |
| MsG0080049011.01 | MsG0480020024.01 | 0.848941 | 4.445781e-60 | 8.293287e-57 |
| MsG0080049011.01 | MsG0480020025.01 | 0.817808 | 2.720630e-52 | 2.001616e-49 |
| MsG0080049011.01 | MsG0480021776.01 | -0.858890 | 6.035642e-63 | 1.564171e-59 |
| MsG0080049011.01 | MsG0480022166.01 | 0.829451 | 5.111603e-55 | 5.233399e-52 |
| MsG0080049011.01 | MsG0480022239.01 | 0.850746 | 1.391112e-60 | 2.752544e-57 |
| MsG0080049011.01 | MsG0480022245.01 | 0.827501 | 1.510728e-54 | 1.461147e-51 |
| MsG0080049011.01 | MsG0480022246.01 | 0.822650 | 2.115049e-53 | 1.781075e-50 |
| MsG0080049011.01 | MsG0480022248.01 | 0.847698 | 9.810983e-60 | 1.758481e-56 |
| MsG0080049011.01 | MsG0480022401.01 | 0.826855 | 2.157444e-54 | 2.047514e-51 |
| MsG0080049011.01 | MsG0480022921.01 | 0.835530 | 1.590448e-56 | 1.950149e-53 |
| MsG0080049011.01 | MsG0480023073.01 | 0.840275 | 9.593263e-58 | 1.359559e-54 |
| MsG0080049011.01 | MsG0480023162.01 | 0.812962 | 3.255443e-51 | 2.098594e-48 |
| MsG0080049011.01 | MsG0480023348.01 | -0.813854 | 2.073565e-51 | 1.369421e-48 |
| MsG0080049011.01 | MsG0480023384.01 | 0.817386 | 3.387178e-52 | 2.463307e-49 |
| MsG0080049011.01 | MsG0480023652.01 | 0.837447 | 5.169822e-57 | 6.717650e-54 |
| MsG0080049011.01 | MsG0480023660.01 | 0.841811 | 3.788919e-58 | 5.632084e-55 |
| MsG0080049011.01 | MsG0480023867.01 | 0.857713 | 1.353025e-62 | 3.370404e-59 |
| MsG0080049011.01 | MsG0480023877.01 | 0.802981 | 4.334963e-49 | 2.152934e-46 |
| MsG0080049011.01 | MsG0580024084.01 | 0.835963 | 1.235314e-56 | 1.534527e-53 |
| MsG0080049011.01 | MsG0580024495.01 | 0.809649 | 1.704305e-50 | 1.006332e-47 |
| MsG0080049011.01 | MsG0580024930.01 | -0.849195 | 3.778458e-60 | 7.108247e-57 |
| MsG0080049011.01 | MsG0580025055.01 | 0.807023 | 6.188066e-50 | 3.409665e-47 |
| MsG0080049011.01 | MsG0580026137.01 | 0.801600 | 8.340068e-49 | 3.999040e-46 |
| MsG0080049011.01 | MsG0580026206.01 | 0.811885 | 5.597901e-51 | 3.506179e-48 |
| MsG0080049011.01 | MsG0580026439.01 | 0.819252 | 1.280718e-52 | 9.804566e-50 |
| MsG0080049011.01 | MsG0580027103.01 | 0.805526 | 1.279583e-49 | 6.784736e-47 |
| MsG0080049011.01 | MsG0580028551.01 | 0.814318 | 1.637819e-51 | 1.095423e-48 |
| MsG0080049011.01 | MsG0580028582.01 | 0.813850 | 2.077576e-51 | 1.371945e-48 |
| MsG0080049011.01 | MsG0580028630.01 | 0.801640 | 8.184025e-49 | 3.928302e-46 |
| MsG0080049011.01 | MsG0580028754.01 | 0.803097 | 4.102302e-49 | 2.043381e-46 |
| MsG0080049011.01 | MsG0580029549.01 | 0.814046 | 1.880314e-51 | 1.248322e-48 |
| MsG0080049011.01 | MsG0580029879.01 | 0.838369 | 2.996236e-57 | 4.004576e-54 |
| MsG0080049011.01 | MsG0580029912.01 | 0.813713 | 2.226243e-51 | 1.464782e-48 |
| MsG0080049011.01 | MsG0580029914.01 | 0.822317 | 2.527790e-53 | 2.108482e-50 |
| MsG0080049011.01 | MsG0680030555.01 | 0.837581 | 4.778003e-57 | 6.234032e-54 |
| MsG0080049011.01 | MsG0680031000.01 | 0.828238 | 1.004580e-54 | 9.927044e-52 |
| MsG0080049011.01 | MsG0680031468.01 | 0.802522 | 5.391193e-49 | 2.646385e-46 |
| MsG0080049011.01 | MsG0680031469.01 | 0.823456 | 1.372038e-53 | 1.181913e-50 |
| MsG0080049011.01 | MsG0680031939.01 | 0.805530 | 1.276771e-49 | 6.770607e-47 |
| MsG0080049011.01 | MsG0680032827.01 | 0.813236 | 2.834367e-51 | 1.840694e-48 |
| MsG0080049011.01 | MsG0680032830.01 | 0.821476 | 3.955980e-53 | 3.221819e-50 |
| MsG0080049011.01 | MsG0680034064.01 | 0.823637 | 1.244143e-53 | 1.077373e-50 |
| MsG0080049011.01 | MsG0680034235.01 | 0.816616 | 5.046241e-52 | 3.593066e-49 |
| MsG0080049011.01 | MsG0680035765.01 | 0.818968 | 1.485938e-52 | 1.128797e-49 |
| MsG0080049011.01 | MsG0780035960.01 | 0.811548 | 6.626759e-51 | 4.113930e-48 |
| MsG0080049011.01 | MsG0780036642.01 | 0.805702 | 1.175249e-49 | 6.260401e-47 |
| MsG0080049011.01 | MsG0780036659.01 | 0.820663 | 6.090058e-53 | 4.848559e-50 |
| MsG0080049011.01 | MsG0780036803.01 | 0.803307 | 3.711055e-49 | 1.858559e-46 |
| MsG0080049011.01 | MsG0780037082.01 | 0.814685 | 1.358742e-51 | 9.177798e-49 |
| MsG0080049011.01 | MsG0780037330.01 | 0.822872 | 1.877569e-53 | 1.591058e-50 |
| MsG0080049011.01 | MsG0780037399.01 | 0.813064 | 3.092565e-51 | 1.999050e-48 |
| MsG0080049011.01 | MsG0780038584.01 | -0.848693 | 5.210468e-60 | 9.641579e-57 |
| MsG0080049011.01 | MsG0780041091.01 | 0.803845 | 2.870507e-49 | 1.457714e-46 |
| MsG0080049011.01 | MsG0780041137.01 | 0.804857 | 1.766030e-49 | 9.205312e-47 |
| MsG0080049011.01 | MsG0780041729.01 | -0.868590 | 5.833708e-66 | 2.121877e-62 |
| MsG0080049011.01 | MsG0780041747.01 | 0.860332 | 2.223956e-63 | 6.056759e-60 |
| MsG0080049011.01 | MsG0880042062.01 | 0.800872 | 1.175572e-48 | 5.534453e-46 |
| MsG0080049011.01 | MsG0880042134.01 | 0.814843 | 1.253088e-51 | 8.500437e-49 |
| MsG0080049011.01 | MsG0880043829.01 | 0.853467 | 2.344431e-61 | 5.070705e-58 |
| MsG0080049011.01 | MsG0880044005.01 | 0.817100 | 3.928675e-52 | 2.834606e-49 |
| MsG0080049011.01 | MsG0880046536.01 | 0.800846 | 1.189996e-48 | 5.598708e-46 |
| MsG0080049011.01 | MsG0880046867.01 | 0.803224 | 3.861119e-49 | 1.929622e-46 |
| MsG0080049011.01 | MsG0880046963.01 | -0.833821 | 4.278905e-56 | 4.984941e-53 |
| MsG0080049011.01 | MsG0880047045.01 | 0.815313 | 9.853184e-52 | 6.770045e-49 |
| MsG0080049011.01 | MsG0880047046.01 | 0.815177 | 1.056392e-51 | 7.230938e-49 |
| MsG0080049011.01 | MsG0880047052.01 | 0.848150 | 7.364037e-60 | 1.338666e-56 |
| MsG0080049011.01 | MsG0880047152.01 | 0.828671 | 7.897169e-55 | 7.902674e-52 |
| MsG0080049011.01 | MsG0880047212.01 | 0.814989 | 1.163441e-51 | 7.923489e-49 |
| MsG0080049011.01 | MsG0880047696.01 | 0.813128 | 2.994399e-51 | 1.938882e-48 |
| MsG0080049011.01 | MsG0880047703.01 | 0.820801 | 5.662374e-53 | 4.525646e-50 |
| MsG0080049011.01 | MsG0880047763.01 | 0.806175 | 9.346966e-50 | 5.039515e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080049011.01.T01 | MTR_1g101840 | 97.143 | 140 | 4 | 0 | 147 | 286 | 14 | 153 | 1.95e-95 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080049011.01.T01 | AT5G51880 | 67.234 | 235 | 73 | 2 | 52 | 286 | 20 | 250 | 3.90e-107 | 311 |
Find 43 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCACCGTGATATTAAATT+TGG | 0.098644 | contig606end:-11506 | MsG0080049011.01.T01:exon |
| GGTTTGATGGAAGGCCATTT+TGG | 0.200195 | contig606end:+11104 | MsG0080049011.01.T01:intergenic |
| GTGTGTATCGTTCCTCTATT+TGG | 0.276967 | contig606end:+11195 | MsG0080049011.01.T01:intergenic |
| TCTCAATCCGCTCATTCTTC+CGG | 0.310065 | contig606end:-11549 | MsG0080049011.01.T01:exon |
| AATGGAAGAATGGAAAATAT+TGG | 0.311523 | contig606end:+11367 | MsG0080049011.01.T01:intergenic |
| ATATCGTCAAGCGGTTCTTC+AGG | 0.324950 | contig606end:-11229 | MsG0080049011.01.T01:exon |
| AAACAACAACCGACCCAAAA+TGG | 0.337133 | contig606end:-11118 | MsG0080049011.01.T01:exon |
| CTCAATCCGCTCATTCTTCC+GGG | 0.338610 | contig606end:-11548 | MsG0080049011.01.T01:exon |
| CACAACACATACAACACATC+TGG | 0.385930 | contig606end:-11446 | MsG0080049011.01.T01:exon |
| ATGGAAGAATGGAAAATATT+GGG | 0.402847 | contig606end:+11368 | MsG0080049011.01.T01:intergenic |
| TCATTCTTCCGGGAAGCACT+TGG | 0.404752 | contig606end:-11538 | MsG0080049011.01.T01:exon |
| GTCACCGTGATATTAAATTT+GGG | 0.409473 | contig606end:-11505 | MsG0080049011.01.T01:exon |
| ACACATTGTCACATAACATC+TGG | 0.412327 | contig606end:-11473 | MsG0080049011.01.T01:exon |
| TATCACCGTGACATTAAATC+TGG | 0.418334 | contig606end:+11399 | MsG0080049011.01.T01:intergenic |
| CGTAAGGAGGAAGAGAAGAA+TGG | 0.434067 | contig606end:-11153 | MsG0080049011.01.T01:exon |
| TATGTCACCCAAGTGCTTCC+CGG | 0.451787 | contig606end:+11530 | MsG0080049011.01.T01:intergenic |
| ACGAGATTTCGATCTCTTCA+CGG | 0.469965 | contig606end:-11054 | MsG0080049011.01.T01:intron |
| GTAAGGAGGAAGAGAAGAAT+GGG | 0.473208 | contig606end:-11152 | MsG0080049011.01.T01:exon |
| TTGATATCGAAGCTTACAAA+AGG | 0.479734 | contig606end:-11274 | MsG0080049011.01.T01:exon |
| TTGATGCAGCAATGGAAGAA+TGG | 0.495910 | contig606end:+11357 | MsG0080049011.01.T01:intergenic |
| GTAGGGAGGAAGGGAGCGTA+AGG | 0.501839 | contig606end:-11169 | MsG0080049011.01.T01:exon |
| ATGAGCGGATTGAGATTTCA+AGG | 0.502499 | contig606end:+11557 | MsG0080049011.01.T01:intergenic |
| GGAACGATACACACCTCGTA+GGG | 0.520041 | contig606end:-11186 | MsG0080049011.01.T01:exon |
| CATTCTTCCGGGAAGCACTT+GGG | 0.525012 | contig606end:-11537 | MsG0080049011.01.T01:exon |
| TACACACCTCGTAGGGAGGA+AGG | 0.532568 | contig606end:-11179 | MsG0080049011.01.T01:exon |
| TATCGTCAAGCGGTTCTTCA+GGG | 0.532995 | contig606end:-11228 | MsG0080049011.01.T01:exon |
| CACATTGTCACATAACATCT+GGG | 0.562372 | contig606end:-11472 | MsG0080049011.01.T01:exon |
| GGGAGGAAGGGAGCGTAAGG+AGG | 0.570609 | contig606end:-11166 | MsG0080049011.01.T01:exon |
| ACACACCTCGTAGGGAGGAA+GGG | 0.587796 | contig606end:-11178 | MsG0080049011.01.T01:exon |
| ACAACACATACAACACATCT+GGG | 0.588370 | contig606end:-11445 | MsG0080049011.01.T01:exon |
| GTGGCCCAAATTTAATATCA+CGG | 0.592997 | contig606end:+11501 | MsG0080049011.01.T01:intergenic |
| ACCACATGTGTTGTGTTGTG+TGG | 0.600477 | contig606end:+11422 | MsG0080049011.01.T01:intergenic |
| GGAGCGACGAAACCAAATAG+AGG | 0.610911 | contig606end:-11207 | MsG0080049011.01.T01:exon |
| ATATCGAAGCTTACAAAAGG+CGG | 0.612848 | contig606end:-11271 | MsG0080049011.01.T01:exon |
| GTGCTTCCCGGAAGAATGAG+CGG | 0.639164 | contig606end:+11542 | MsG0080049011.01.T01:intergenic |
| ATGTGACAATGTGTGTTGTG+TGG | 0.653101 | contig606end:+11482 | MsG0080049011.01.T01:intergenic |
| AGGAACGATACACACCTCGT+AGG | 0.654477 | contig606end:-11187 | MsG0080049011.01.T01:exon |
| ACGATACACACCTCGTAGGG+AGG | 0.666557 | contig606end:-11183 | MsG0080049011.01.T01:exon |
| GTGGTCCAGATTTAATGTCA+CGG | 0.667032 | contig606end:-11404 | MsG0080049011.01.T01:exon |
| GCCACACAACACAACACATG+TGG | 0.667289 | contig606end:-11423 | MsG0080049011.01.T01:exon |
| GGCGGTCTGAAATCGAAGAG+AGG | 0.678046 | contig606end:-11253 | MsG0080049011.01.T01:exon |
| ACGCTCCCTTCCTCCCTACG+AGG | 0.685966 | contig606end:+11173 | MsG0080049011.01.T01:intergenic |
| AAGAGAGGTATATCGTCAAG+CGG | 0.696308 | contig606end:-11238 | MsG0080049011.01.T01:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACTAAAAAAAAATATCAA+TGG | - | contig606end:9575-9594 | MsG0080049011.01.T01:CDS | 10.0% |
| !! | AACCTATATAATCTAATATT+TGG | + | contig606end:10175-10194 | MsG0080049011.01.T01:intergenic | 15.0% |
| !! | AATAATTCACAGATAAAATT+GGG | + | contig606end:9902-9921 | MsG0080049011.01.T01:intergenic | 15.0% |
| !! | ATATAAATAGCTTATACATA+AGG | - | contig606end:10666-10685 | MsG0080049011.01.T01:intron | 15.0% |
| !! | ATCCAAATATTAGATTATAT+AGG | - | contig606end:10170-10189 | MsG0080049011.01.T01:intron | 15.0% |
| !! | TATAAATAGCTTATACATAA+GGG | - | contig606end:10667-10686 | MsG0080049011.01.T01:intron | 15.0% |
| !!! | TCAAAAAGAAATAATTTTGA+AGG | + | contig606end:9603-9622 | MsG0080049011.01.T01:intergenic | 15.0% |
| !! | ACACATGATATCTTTAAATT+TGG | - | contig606end:10848-10867 | MsG0080049011.01.T01:CDS | 20.0% |
| !! | ATAAGCTATTTATATAGCAA+AGG | + | contig606end:10661-10680 | MsG0080049011.01.T01:intergenic | 20.0% |
| !! | GAATAATTCACAGATAAAAT+TGG | + | contig606end:9903-9922 | MsG0080049011.01.T01:intergenic | 20.0% |
| !! | TGCTATAAATGTTTAGTTAA+GGG | - | contig606end:10449-10468 | MsG0080049011.01.T01:intron | 20.0% |
| !! | TTGCTATAAATGTTTAGTTA+AGG | - | contig606end:10448-10467 | MsG0080049011.01.T01:intron | 20.0% |
| !!! | ACCATATATTAAACTTGTTT+CGG | - | contig606end:10307-10326 | MsG0080049011.01.T01:intron | 20.0% |
| !!! | TGATACAATTTTGATTTTAC+AGG | - | contig606end:11238-11257 | MsG0080049011.01.T01:exon | 20.0% |
| !!! | TTTTAGTAATACGAGATTTT+TGG | + | contig606end:9564-9583 | MsG0080049011.01.T01:intergenic | 20.0% |
| ! | AATAAGCTATTTATCCAAAC+AGG | - | contig606end:10724-10743 | MsG0080049011.01.T01:CDS | 25.0% |
| ! | AATGGAAGAATGGAAAATAT+TGG | + | contig606end:9529-9548 | MsG0080049011.01.T01:intergenic | 25.0% |
| ! | ACCGAAACAAGTTTAATATA+TGG | + | contig606end:10311-10330 | MsG0080049011.01.T01:intergenic | 25.0% |
| ! | ATAAGCTATTTATCCAAACA+GGG | - | contig606end:10725-10744 | MsG0080049011.01.T01:CDS | 25.0% |
| ! | ATGGAAGAATGGAAAATATT+GGG | + | contig606end:9528-9547 | MsG0080049011.01.T01:intergenic | 25.0% |
| ! | ATTGGGAAAAGAAAAAGAAA+AGG | + | contig606end:9885-9904 | MsG0080049011.01.T01:intergenic | 25.0% |
| ! | TAGAGATAATGATCGAATTT+CGG | - | contig606end:10051-10070 | MsG0080049011.01.T01:intron | 25.0% |
| ! | TCAACTAAATTAATCCAAAC+AGG | + | contig606end:10256-10275 | MsG0080049011.01.T01:intergenic | 25.0% |
| ! | TGTAAAATATGTCTTTCGTT+CGG | - | contig606end:11343-11362 | MsG0080049011.01.T01:exon | 25.0% |
| ! | TTGGGAAAAGAAAAAGAAAA+GGG | + | contig606end:9884-9903 | MsG0080049011.01.T01:intergenic | 25.0% |
| ! | TTTCTGATATAAGAATTCGA+GGG | - | contig606end:10128-10147 | MsG0080049011.01.T01:intron | 25.0% |
| !! | AAAGACATATTTTACACCTT+TGG | + | contig606end:11339-11358 | MsG0080049011.01.T01:intergenic | 25.0% |
| !! | CTTTTCATCTTATGAATCAA+AGG | - | contig606end:9955-9974 | MsG0080049011.01.T01:CDS | 25.0% |
| !! | TGTTATAATTTTGCTGAATC+TGG | - | contig606end:11532-11551 | MsG0080049011.01.T01:exon | 25.0% |
| !! | TTTTCTGATATAAGAATTCG+AGG | - | contig606end:10127-10146 | MsG0080049011.01.T01:intron | 25.0% |
| !!! | CTTATTTTGATGATTTTTCC+AGG | - | contig606end:9922-9941 | MsG0080049011.01.T01:CDS | 25.0% |
| !!! | TCATGCATTTTTTGTATTTC+AGG | - | contig606end:10907-10926 | MsG0080049011.01.T01:CDS | 25.0% |
| AAATGCATGACAATTAGTGA+AGG | + | contig606end:10897-10916 | MsG0080049011.01.T01:intergenic | 30.0% | |
| ATACCAGAGAATTTGATACA+AGG | + | contig606end:11399-11418 | MsG0080049011.01.T01:intergenic | 30.0% | |
| ATGAAAAGAAATTCTGAACC+TGG | + | contig606end:9943-9962 | MsG0080049011.01.T01:intergenic | 30.0% | |
| CTAAGTTGTTTATGCAAACA+AGG | - | contig606end:10749-10768 | MsG0080049011.01.T01:CDS | 30.0% | |
| GTCACCGTGATATTAAATTT+GGG | - | contig606end:9388-9407 | MsG0080049011.01.T01:exon | 30.0% | |
| TAAGCTATTTATCCAAACAG+GGG | - | contig606end:10726-10745 | MsG0080049011.01.T01:CDS | 30.0% | |
| TAGTTGTATAAGAACCTGTT+TGG | - | contig606end:10239-10258 | MsG0080049011.01.T01:intron | 30.0% | |
| TGTCACCGTGATATTAAATT+TGG | - | contig606end:9387-9406 | MsG0080049011.01.T01:exon | 30.0% | |
| TTGATATCGAAGCTTACAAA+AGG | - | contig606end:9619-9638 | MsG0080049011.01.T01:CDS | 30.0% | |
| TTTACTCATCAAGGAAGTTT+AGG | - | contig606end:10007-10026 | MsG0080049011.01.T01:intron | 30.0% | |
| ! | ACTTTGCTAGTTTATTTGAG+TGG | - | contig606end:11005-11024 | MsG0080049011.01.T01:intron | 30.0% |
| ! | AGTGATGTGAAGATTGTTTT+TGG | + | contig606end:9814-9833 | MsG0080049011.01.T01:intergenic | 30.0% |
| ! | TTGTATTTCAGGTACAAAGT+TGG | - | contig606end:10918-10937 | MsG0080049011.01.T01:CDS | 30.0% |
| !! | ATGTTGCTTAATGCAAGTTT+TGG | - | contig606end:11188-11207 | MsG0080049011.01.T01:exon | 30.0% |
| !! | GTGATGTGAAGATTGTTTTT+GGG | + | contig606end:9813-9832 | MsG0080049011.01.T01:intergenic | 30.0% |
| !! | TGTTCTTGCTGATTCTATTT+GGG | - | contig606end:10084-10103 | MsG0080049011.01.T01:intron | 30.0% |
| !!! | AAGATTGTTTTTGGGTTTGA+TGG | + | contig606end:9805-9824 | MsG0080049011.01.T01:intergenic | 30.0% |
| ACAACACATACAACACATCT+GGG | - | contig606end:9448-9467 | MsG0080049011.01.T01:exon | 35.0% | |
| ACACATTGTCACATAACATC+TGG | - | contig606end:9420-9439 | MsG0080049011.01.T01:exon | 35.0% | |
| ATATCGAAGCTTACAAAAGG+CGG | - | contig606end:9622-9641 | MsG0080049011.01.T01:CDS | 35.0% | |
| ATCGATGAGAGTAATGATCT+TGG | - | contig606end:10960-10979 | MsG0080049011.01.T01:intron | 35.0% | |
| ATGCCTTGTATCAAATTCTC+TGG | - | contig606end:11393-11412 | MsG0080049011.01.T01:exon | 35.0% | |
| ATGTCACTATTTGCTTGCTT+TGG | - | contig606end:11211-11230 | MsG0080049011.01.T01:exon | 35.0% | |
| CAAATAGAATCAGCAAGAAC+AGG | + | contig606end:10085-10104 | MsG0080049011.01.T01:intergenic | 35.0% | |
| CACATTGTCACATAACATCT+GGG | - | contig606end:9421-9440 | MsG0080049011.01.T01:exon | 35.0% | |
| CTGGTATATTCTTCATCTGA+AGG | - | contig606end:11412-11431 | MsG0080049011.01.T01:exon | 35.0% | |
| GTAAGCTCTTTATGATAGCT+CGG | - | contig606end:10329-10348 | MsG0080049011.01.T01:intron | 35.0% | |
| GTGGCCCAAATTTAATATCA+CGG | + | contig606end:9395-9414 | MsG0080049011.01.T01:intergenic | 35.0% | |
| TAAGCTCTTTATGATAGCTC+GGG | - | contig606end:10330-10349 | MsG0080049011.01.T01:intron | 35.0% | |
| TATCACCGTGACATTAAATC+TGG | + | contig606end:9497-9516 | MsG0080049011.01.T01:intergenic | 35.0% | |
| TCATCTTCTGATCGTTTAGT+TGG | - | contig606end:11083-11102 | MsG0080049011.01.T01:exon | 35.0% | |
| TGGTTCAAGAAATAGCATTG+TGG | - | contig606end:11124-11143 | MsG0080049011.01.T01:exon | 35.0% | |
| TGTCACTATTTGCTTGCTTT+GGG | - | contig606end:11212-11231 | MsG0080049011.01.T01:exon | 35.0% | |
| TGTTTAGTTAAGGGTCTGTT+TGG | - | contig606end:10458-10477 | MsG0080049011.01.T01:intron | 35.0% | |
| ! | ACTTGTTTGGGTTTATCTAC+CGG | - | contig606end:10485-10504 | MsG0080049011.01.T01:intron | 35.0% |
| ! | TACACCTTTGGTAACATTTC+TGG | + | contig606end:11327-11346 | MsG0080049011.01.T01:intergenic | 35.0% |
| ! | TTGCTAGTTTATTTGAGTGG+CGG | - | contig606end:11008-11027 | MsG0080049011.01.T01:intron | 35.0% |
| !! | CTGTTCTTGCTGATTCTATT+TGG | - | contig606end:10083-10102 | MsG0080049011.01.T01:intron | 35.0% |
| !! | CTGTTTGGATTGACTTGTTT+GGG | - | contig606end:10473-10492 | MsG0080049011.01.T01:intron | 35.0% |
| !! | GCTGTTTTCATAAGCTATCT+TGG | + | contig606end:10601-10620 | MsG0080049011.01.T01:intergenic | 35.0% |
| !! | TCTGTTTGGATTGACTTGTT+TGG | - | contig606end:10472-10491 | MsG0080049011.01.T01:intron | 35.0% |
| !!! | GGAATTGGTTTTACTCATCA+AGG | - | contig606end:9998-10017 | MsG0080049011.01.T01:intron | 35.0% |
| !!! | TTGTTTTTGGGTTTGATGGA+AGG | + | contig606end:9801-9820 | MsG0080049011.01.T01:intergenic | 35.0% |
| !!! | TTTTGGTATTGATGCAGCAA+TGG | + | contig606end:9547-9566 | MsG0080049011.01.T01:intergenic | 35.0% |
| AAACAACAACCGACCCAAAA+TGG | - | contig606end:9775-9794 | MsG0080049011.01.T01:CDS | 40.0% | |
| AAGAAATAGCATTGTGGCTG+AGG | - | contig606end:11130-11149 | MsG0080049011.01.T01:exon | 40.0% | |
| ACCTGGTGAAGTTAAATCCA+AGG | - | contig606end:11031-11050 | MsG0080049011.01.T01:intron | 40.0% | |
| ACGAGATTTCGATCTCTTCA+CGG | - | contig606end:9839-9858 | MsG0080049011.01.T01:CDS | 40.0% | |
| AGATGAATCTGTAGGTTTGC+TGG | + | contig606end:11069-11088 | MsG0080049011.01.T01:intergenic | 40.0% | |
| ATGTGACAATGTGTGTTGTG+TGG | + | contig606end:9414-9433 | MsG0080049011.01.T01:intergenic | 40.0% | |
| ATTGAAACTGCTGAGGGAAT+TGG | - | contig606end:9983-10002 | MsG0080049011.01.T01:intron | 40.0% | |
| CACAACACATACAACACATC+TGG | - | contig606end:9447-9466 | MsG0080049011.01.T01:exon | 40.0% | |
| CAGTCTCGGAAAATTTCTAC+CGG | + | contig606end:10507-10526 | MsG0080049011.01.T01:intergenic | 40.0% | |
| CGATCAGAAGATGAATCTGT+AGG | + | contig606end:11077-11096 | MsG0080049011.01.T01:intergenic | 40.0% | |
| CTATAAGCTTCACCTTTAGC+TGG | + | contig606end:10034-10053 | MsG0080049011.01.T01:intergenic | 40.0% | |
| GAAGCCAGAAATGTTACCAA+AGG | - | contig606end:11320-11339 | MsG0080049011.01.T01:exon | 40.0% | |
| GAGAGTAATGATCTTGGAGA+TGG | - | contig606end:10966-10985 | MsG0080049011.01.T01:intron | 40.0% | |
| GCATTCATTGAAACTGCTGA+GGG | - | contig606end:9977-9996 | MsG0080049011.01.T01:intron | 40.0% | |
| GTAAGGAGGAAGAGAAGAAT+GGG | - | contig606end:9741-9760 | MsG0080049011.01.T01:intron | 40.0% | |
| GTGGTCCAGATTTAATGTCA+CGG | - | contig606end:9489-9508 | MsG0080049011.01.T01:exon | 40.0% | |
| GTGTGTATCGTTCCTCTATT+TGG | + | contig606end:9701-9720 | MsG0080049011.01.T01:intergenic | 40.0% | |
| TAAACAACTTAGCCCCTGTT+TGG | + | contig606end:10741-10760 | MsG0080049011.01.T01:intergenic | 40.0% | |
| TATGTTCTCCTGAACAGTCT+CGG | + | contig606end:10521-10540 | MsG0080049011.01.T01:intergenic | 40.0% | |
| TCGGATGTTGTATTTGCTTG+AGG | - | contig606end:11362-11381 | MsG0080049011.01.T01:exon | 40.0% | |
| TCTTCTGATCGTTTAGTTGG+AGG | - | contig606end:11086-11105 | MsG0080049011.01.T01:exon | 40.0% | |
| TTGATGCAGCAATGGAAGAA+TGG | + | contig606end:9539-9558 | MsG0080049011.01.T01:intergenic | 40.0% | |
| ! | AAGAGAGGTATATCGTCAAG+CGG | - | contig606end:9655-9674 | MsG0080049011.01.T01:intron | 40.0% |
| ! | GAAATTTTCCGAGACTGTTC+AGG | - | contig606end:10510-10529 | MsG0080049011.01.T01:intron | 40.0% |
| ! | GCTGATTCTATTTGGGATTC+TGG | - | contig606end:10091-10110 | MsG0080049011.01.T01:intron | 40.0% |
| ! | TACAAAGTTGGTCAACGGTT+TGG | - | contig606end:10930-10949 | MsG0080049011.01.T01:CDS | 40.0% |
| ! | TCAGGTACAAAGTTGGTCAA+CGG | - | contig606end:10925-10944 | MsG0080049011.01.T01:CDS | 40.0% |
| !! | ATGAGCGGATTGAGATTTCA+AGG | + | contig606end:9339-9358 | MsG0080049011.01.T01:intergenic | 40.0% |
| !! | GTTTGATGGAAGGCCATTTT+GGG | + | contig606end:9791-9810 | MsG0080049011.01.T01:intergenic | 40.0% |
| !!! | GCTGGAATCATTTTTAGCCT+TGG | + | contig606end:11051-11070 | MsG0080049011.01.T01:intergenic | 40.0% |
| ACCACATGTGTTGTGTTGTG+TGG | + | contig606end:9474-9493 | MsG0080049011.01.T01:intergenic | 45.0% | |
| ATATCGTCAAGCGGTTCTTC+AGG | - | contig606end:9664-9683 | MsG0080049011.01.T01:intron | 45.0% | |
| ATGGCACTCTTGCACATTCA+TGG | - | contig606end:11278-11297 | MsG0080049011.01.T01:exon | 45.0% | |
| CGTAAGGAGGAAGAGAAGAA+TGG | - | contig606end:9740-9759 | MsG0080049011.01.T01:intron | 45.0% | |
| GGAAGTTTAGGTCCAGCTAA+AGG | - | contig606end:10019-10038 | MsG0080049011.01.T01:intron | 45.0% | |
| GGAGGAGAAACAGTCTTCTA+TGG | - | contig606end:11104-11123 | MsG0080049011.01.T01:exon | 45.0% | |
| GGCATTCATTGAAACTGCTG+AGG | - | contig606end:9976-9995 | MsG0080049011.01.T01:intron | 45.0% | |
| TACAGGTTGCTCCCATTGAA+GGG | - | contig606end:11255-11274 | MsG0080049011.01.T01:exon | 45.0% | |
| TATCGTCAAGCGGTTCTTCA+GGG | - | contig606end:9665-9684 | MsG0080049011.01.T01:intron | 45.0% | |
| TCTCAATCCGCTCATTCTTC+CGG | - | contig606end:9344-9363 | MsG0080049011.01.T01:exon | 45.0% | |
| TTACAGGTTGCTCCCATTGA+AGG | - | contig606end:11254-11273 | MsG0080049011.01.T01:exon | 45.0% | |
| ! | GCCTTGGATTTAACTTCACC+AGG | + | contig606end:11035-11054 | MsG0080049011.01.T01:intergenic | 45.0% |
| ! | GGTTTGATGGAAGGCCATTT+TGG | + | contig606end:9792-9811 | MsG0080049011.01.T01:intergenic | 45.0% |
| !! | AAGAGTGCCATCCCTTCAAT+GGG | + | contig606end:11269-11288 | MsG0080049011.01.T01:intergenic | 45.0% |
| AGGAACGATACACACCTCGT+AGG | - | contig606end:9706-9725 | MsG0080049011.01.T01:intron | 50.0% | |
| ATTCGAGGGAAAGCTGCTGT+AGG | - | contig606end:10142-10161 | MsG0080049011.01.T01:intron | 50.0% | |
| CTCAATCCGCTCATTCTTCC+GGG | - | contig606end:9345-9364 | MsG0080049011.01.T01:exon | 50.0% | |
| GCCACACAACACAACACATG+TGG | - | contig606end:9470-9489 | MsG0080049011.01.T01:exon | 50.0% | |
| GGAACGATACACACCTCGTA+GGG | - | contig606end:9707-9726 | MsG0080049011.01.T01:intron | 50.0% | |
| GGAGCGACGAAACCAAATAG+AGG | - | contig606end:9686-9705 | MsG0080049011.01.T01:intron | 50.0% | |
| TATGTCACCCAAGTGCTTCC+CGG | + | contig606end:9366-9385 | MsG0080049011.01.T01:intergenic | 50.0% | |
| !! | CAAGAGTGCCATCCCTTCAA+TGG | + | contig606end:11270-11289 | MsG0080049011.01.T01:intergenic | 50.0% |
| !! | CATTCTTCCGGGAAGCACTT+GGG | - | contig606end:9356-9375 | MsG0080049011.01.T01:exon | 50.0% |
| !! | GATGGAAGGCCATTTTGGGT+CGG | + | contig606end:9787-9806 | MsG0080049011.01.T01:intergenic | 50.0% |
| !! | GTTTATTTGAGTGGCGGACC+TGG | - | contig606end:11014-11033 | MsG0080049011.01.T01:intron | 50.0% |
| !! | TCATTCTTCCGGGAAGCACT+TGG | - | contig606end:9355-9374 | MsG0080049011.01.T01:exon | 50.0% |
| ACACACCTCGTAGGGAGGAA+GGG | - | contig606end:9715-9734 | MsG0080049011.01.T01:intron | 55.0% | |
| ACGATACACACCTCGTAGGG+AGG | - | contig606end:9710-9729 | MsG0080049011.01.T01:intron | 55.0% | |
| GGTTGCTCCCATTGAAGGGA+TGG | - | contig606end:11259-11278 | MsG0080049011.01.T01:exon | 55.0% | |
| GTGCTTCCCGGAAGAATGAG+CGG | + | contig606end:9354-9373 | MsG0080049011.01.T01:intergenic | 55.0% | |
| TACACACCTCGTAGGGAGGA+AGG | - | contig606end:9714-9733 | MsG0080049011.01.T01:intron | 55.0% | |
| ! | GGCGGTCTGAAATCGAAGAG+AGG | - | contig606end:9640-9659 | MsG0080049011.01.T01:intron | 55.0% |
| ! | GTAGGGAGGAAGGGAGCGTA+AGG | - | contig606end:9724-9743 | MsG0080049011.01.T01:intron | 60.0% |
| ACGCTCCCTTCCTCCCTACG+AGG | + | contig606end:9723-9742 | MsG0080049011.01.T01:intergenic | 65.0% | |
| ! | GGGAGGAAGGGAGCGTAAGG+AGG | - | contig606end:9727-9746 | MsG0080049011.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig606end | gene | 9314 | 11601 | 9314 | ID=MsG0080049011.01; |
| contig606end | mRNA | 9314 | 11601 | 9314 | ID=MsG0080049011.01.T01;Parent=MsG0080049011.01 |
| contig606end | exon | 9314 | 9655 | 9314 | ID=MsG0080049011.01.T01.exon;Parent=MsG0080049011.01.T01 |
| contig606end | CDS | 9533 | 9655 | 9533 | ID=MsG0080049011.01.T01.cds;Parent=MsG0080049011.01.T01 |
| contig606end | CDS | 9764 | 9986 | 9764 | ID=MsG0080049011.01.T01.cds;Parent=MsG0080049011.01.T01 |
| contig606end | exon | 9764 | 9986 | 9764 | ID=MsG0080049011.01.T01.exon;Parent=MsG0080049011.01.T01 |
| contig606end | CDS | 10724 | 10971 | 10724 | ID=MsG0080049011.01.T01.cds;Parent=MsG0080049011.01.T01 |
| contig606end | exon | 10724 | 10971 | 10724 | ID=MsG0080049011.01.T01.exon;Parent=MsG0080049011.01.T01 |
| contig606end | CDS | 11055 | 11321 | 11055 | ID=MsG0080049011.01.T01.cds;Parent=MsG0080049011.01.T01 |
| contig606end | exon | 11055 | 11601 | 11055 | ID=MsG0080049011.01.T01.exon;Parent=MsG0080049011.01.T01 |
| Gene Sequence |
| Protein sequence |
