AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036713.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036713.01.T01 MTR_6g039060 32.172 488 256 12 24 468 19 474 9.37e-72 237
MsG0780036713.01.T01 MTR_5g049460 33.750 480 256 13 24 449 19 490 3.10e-66 221
MsG0780036713.01.T01 MTR_0010s0130 34.868 456 256 13 24 468 19 444 3.26e-65 222
MsG0780036713.01.T01 MTR_3g047490 40.541 296 151 8 1 285 1 282 1.82e-59 198
MsG0780036713.01.T01 MTR_0752s0020 31.762 488 270 14 1 468 1 445 2.28e-58 203
MsG0780036713.01.T01 MTR_0132s0050 34.420 491 259 15 1 468 1 451 5.00e-55 192
MsG0780036713.01.T01 MTR_0387s0030 32.438 484 213 14 24 464 19 431 8.94e-54 192
MsG0780036713.01.T01 MTR_0195s0040 26.223 511 303 11 26 468 25 529 2.78e-46 170
MsG0780036713.01.T01 MTR_0547s0010 31.186 388 202 9 113 468 1 355 3.11e-45 164
MsG0780036713.01.T01 MTR_4g046907 31.186 388 202 9 113 468 1 355 4.67e-45 164
MsG0780036713.01.T01 MTR_4g053915 27.429 525 303 10 14 468 13 529 2.24e-43 160
MsG0780036713.01.T01 MTR_6g052660 27.664 488 256 14 34 435 6 482 5.76e-42 158
MsG0780036713.01.T01 MTR_6g049080 30.155 388 195 9 24 375 19 366 4.68e-40 148
MsG0780036713.01.T01 MTR_1g053665 33.136 338 193 12 80 402 24 343 1.94e-39 146
MsG0780036713.01.T01 MTR_5g084777 37.109 256 142 8 26 268 24 273 7.99e-39 150
MsG0780036713.01.T01 MTR_7g099763 35.857 251 152 5 26 268 24 273 1.29e-38 142
MsG0780036713.01.T01 MTR_8g012072 35.271 258 140 6 26 271 24 266 4.08e-38 148
MsG0780036713.01.T01 MTR_6g471790 35.271 258 140 6 26 271 24 266 4.14e-38 148
MsG0780036713.01.T01 MTR_0133s0060 35.271 258 140 6 26 271 24 266 4.47e-38 148
MsG0780036713.01.T01 MTR_5g459570 35.686 255 147 6 26 268 24 273 4.52e-38 147
MsG0780036713.01.T01 MTR_8g087757 35.271 258 140 6 26 271 24 266 4.92e-38 148
MsG0780036713.01.T01 MTR_3g436570 35.271 258 140 6 26 271 24 266 5.55e-38 148
MsG0780036713.01.T01 MTR_7g068680 32.353 272 167 5 14 275 13 277 6.14e-38 143
MsG0780036713.01.T01 MTR_7g009270 26.604 530 298 13 26 468 25 550 7.01e-38 147
MsG0780036713.01.T01 MTR_6g047410 27.982 436 246 10 1 377 1 427 3.54e-37 145
MsG0780036713.01.T01 MTR_6g464050 25.427 468 260 11 26 468 25 428 5.28e-37 145
MsG0780036713.01.T01 MTR_7g024373 34.884 258 141 6 26 271 24 266 5.35e-37 145
MsG0780036713.01.T01 MTR_4g119430 26.443 537 295 14 26 468 24 554 2.49e-36 142
MsG0780036713.01.T01 MTR_1465s0010 28.507 442 242 11 26 430 13 417 1.04e-35 138
MsG0780036713.01.T01 MTR_3g048350 32.669 251 151 6 34 274 6 248 1.65e-35 140
MsG0780036713.01.T01 MTR_5g056945 33.466 251 152 5 1 242 1 245 1.48e-34 132
MsG0780036713.01.T01 MTR_0015s0160 27.059 340 205 6 14 314 13 348 3.56e-33 132
MsG0780036713.01.T01 MTR_0454s0020 27.746 346 205 7 36 336 147 492 2.49e-32 130
MsG0780036713.01.T01 MTR_7g027027 40.909 176 95 5 26 193 24 198 1.41e-29 115
MsG0780036713.01.T01 MTR_6g033905 26.586 331 167 6 14 314 13 297 4.34e-29 120
MsG0780036713.01.T01 MTR_0002s0140 44.526 137 72 1 24 156 19 155 2.55e-26 107
MsG0780036713.01.T01 MTR_3g450160 31.667 180 111 3 72 242 1 177 3.99e-23 102
MsG0780036713.01.T01 MTR_8g468090 29.570 186 99 4 69 238 3 172 3.49e-21 96.7
MsG0780036713.01.T01 MTR_0322s0040 27.935 247 144 5 26 270 25 239 1.51e-20 94.0
MsG0780036713.01.T01 MTR_1g099290 33.149 181 95 5 62 236 320 480 3.08e-18 87.8
MsG0780036713.01.T01 MTR_7g038780 24.444 225 140 5 26 238 25 231 7.10e-17 83.2
MsG0780036713.01.T01 MTR_3g436840 47.959 98 48 2 1 98 1 95 1.33e-16 82.4
MsG0780036713.01.T01 MTR_0324s0040 32.168 143 87 2 106 242 10 148 3.86e-16 80.1
MsG0780036713.01.T01 MTR_7g045830 28.013 307 176 9 30 315 1 283 1.72e-15 78.6
MsG0780036713.01.T01 MTR_1g423950 43.836 73 41 0 26 98 24 96 4.26e-14 68.9
MsG0780036713.01.T01 MTR_5g056860 22.774 483 245 13 14 430 13 433 5.90e-14 74.7
MsG0780036713.01.T01 MTR_3g040210 45.122 82 43 1 20 99 4 85 1.98e-13 72.4
MsG0780036713.01.T01 MTR_3g031890 37.097 124 62 6 26 146 25 135 2.04e-12 65.1
MsG0780036713.01.T01 MTR_3g047110 37.179 78 44 3 204 279 30 104 1.22e-11 64.7
MsG0780036713.01.T01 MTR_1g052035 42.000 100 51 5 1 99 1 94 8.11e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 109 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTATAGTGCTTTCGTTTA+TGG 0.044972 7:+12306976 None:intergenic
ACTAATTTGGCTAAGATTTC+AGG 0.116561 7:+12306697 None:intergenic
TGACTCTACTTGAACTATTA+AGG 0.226667 7:+12307582 None:intergenic
CTTCCTTCCTGACTATTTCT+TGG 0.228529 7:+12307230 None:intergenic
GAGATGATCCATTACATATC+TGG 0.266953 7:+12307006 None:intergenic
GCCTTCTTCTTCTTCAGCTT+GGG 0.269411 7:+12306337 None:intergenic
ACTTCCTCAGTGATAGTTAT+AGG 0.276908 7:+12307292 None:intergenic
CAGAAGAGACTGAGATTATC+AGG 0.278740 7:-12306750 MsG0780036713.01.T01:CDS
AGGTTACTACAACTCTCTTC+TGG 0.284802 7:-12307194 MsG0780036713.01.T01:CDS
TGAACTTGGTCAAGGACTTT+TGG 0.305016 7:-12307453 MsG0780036713.01.T01:CDS
TTGTAGACGGACCCAGATTC+TGG 0.307584 7:+12307634 None:intergenic
ATGCAAAGCGTACCAGAATC+TGG 0.310114 7:-12307646 MsG0780036713.01.T01:CDS
AAGTATTTCGAGATGCTAAA+TGG 0.316586 7:-12307487 MsG0780036713.01.T01:CDS
AATTTACTTCATGGCTATTC+TGG 0.318612 7:-12307044 MsG0780036713.01.T01:CDS
AAGAAAAGGTATGGCAGATT+TGG 0.323477 7:-12306419 MsG0780036713.01.T01:CDS
AAGGAAGATGTCCTGCTAAA+AGG 0.323997 7:-12307214 MsG0780036713.01.T01:CDS
GAAGCTAGCAATTTACTTCA+TGG 0.334384 7:-12307053 MsG0780036713.01.T01:CDS
AGCTTCCTCCAGCTGCTCTT+TGG 0.335359 7:+12306390 None:intergenic
AGCCTTCTTCTTCTTCAGCT+TGG 0.346323 7:+12306336 None:intergenic
CCTTTATCCTTGATAGAAAC+AGG 0.349298 7:+12306484 None:intergenic
GCTAGCTTCTGTTGGTTGTT+GGG 0.363964 7:+12307067 None:intergenic
CTGGCCCTCTTTCCTTTAGT+AGG 0.364632 7:+12306577 None:intergenic
TGCTAGCTTCTGTTGGTTGT+TGG 0.366897 7:+12307066 None:intergenic
TTCTGACTCAGTACTAGTTC+TGG 0.378125 7:+12306558 None:intergenic
GACGTACTCAGCTACTAATT+TGG 0.383663 7:+12306684 None:intergenic
GCTTCTGTTGGTTGTTGGGT+TGG 0.395902 7:+12307071 None:intergenic
CTAATTTGGCTAAGATTTCA+GGG 0.408042 7:+12306698 None:intergenic
TGGGTCAAAGAAAGGGAAAT+TGG 0.409220 7:-12307377 MsG0780036713.01.T01:CDS
CCTGTTTCTATCAAGGATAA+AGG 0.429171 7:-12306484 MsG0780036713.01.T01:CDS
AGATGCCAAGCCTTCTGAAA+TGG 0.435555 7:-12307161 MsG0780036713.01.T01:CDS
GAAGATTCCAAGAAATAGTC+AGG 0.435830 7:-12307237 MsG0780036713.01.T01:CDS
CCTTCAACTTGTGAGTCCTA+TGG 0.444502 7:-12306311 MsG0780036713.01.T01:CDS
ATCAGATTCTGAACTAGTTC+TGG 0.448130 7:+12306606 None:intergenic
GGTTACTACAACTCTCTTCT+GGG 0.459886 7:-12307193 MsG0780036713.01.T01:CDS
GGAAGAAGTTGCAAATTCTC+AGG 0.460696 7:-12306659 MsG0780036713.01.T01:CDS
CTGAAATCTTTCATCAAGGA+AGG 0.474024 7:-12306920 MsG0780036713.01.T01:CDS
ATGTAATGGATCATCTCTGC+TGG 0.475466 7:-12307000 MsG0780036713.01.T01:CDS
AGAAATAAGGTCTGAAGTGA+TGG 0.475662 7:-12307320 MsG0780036713.01.T01:CDS
AGATGATCCATTACATATCT+GGG 0.479286 7:+12307007 None:intergenic
CGTCTACAAAGAGAAGACTA+TGG 0.479649 7:-12307620 MsG0780036713.01.T01:CDS
TCTAAGCTATAAAATGATGT+AGG 0.481776 7:+12307340 None:intergenic
AGTATTTCGAGATGCTAAAT+GGG 0.488068 7:-12307486 MsG0780036713.01.T01:CDS
GATTGCTTCTTTCAAAGAGC+AGG 0.488635 7:-12307103 MsG0780036713.01.T01:CDS
AATCTCCATTTCAGAAGGCT+TGG 0.489126 7:+12307156 None:intergenic
ATTCCTCAGAAAAGAAGAAA+AGG 0.494667 7:-12306433 MsG0780036713.01.T01:CDS
ATAAACGAAAGCACTATAAG+AGG 0.495676 7:-12306974 MsG0780036713.01.T01:CDS
TCTGATGCTGCTCCTACTAA+AGG 0.498971 7:-12306589 MsG0780036713.01.T01:CDS
AGCTAAACCTGTTTCTATCA+AGG 0.500242 7:-12306491 MsG0780036713.01.T01:CDS
AGAAGACTATGGATATTCCA+TGG 0.500726 7:-12307609 MsG0780036713.01.T01:CDS
AAACAAGCTGGGTCAAAGAA+AGG 0.502080 7:-12307385 MsG0780036713.01.T01:CDS
AAACTTCCCCAGATATGTAA+TGG 0.502711 7:-12307014 MsG0780036713.01.T01:CDS
AGATGACTCCAAGAATGAAA+AGG 0.507567 7:-12306285 MsG0780036713.01.T01:CDS
AACAAGCTGGGTCAAAGAAA+GGG 0.513083 7:-12307384 MsG0780036713.01.T01:CDS
GAGGAAGCTGCTCTTACTAA+AGG 0.518801 7:-12306637 MsG0780036713.01.T01:CDS
CTCTAAAGATGAAAAGTGGT+TGG 0.519590 7:-12306782 MsG0780036713.01.T01:CDS
CTGTCTGAAATCTTTCATCA+AGG 0.525869 7:-12306924 MsG0780036713.01.T01:CDS
TTGTGAATCTCCATTTCAGA+AGG 0.526263 7:+12307151 None:intergenic
TGGGCCAACATATGTGAACT+TGG 0.531084 7:-12307467 MsG0780036713.01.T01:CDS
GGTAATCACCAAAGAGCAGC+TGG 0.533343 7:-12306398 MsG0780036713.01.T01:CDS
AAAGTTGTAAGCAAACAAGC+TGG 0.533393 7:-12307397 MsG0780036713.01.T01:CDS
TTGACCAAGTTCACATATGT+TGG 0.534216 7:+12307463 None:intergenic
CATAGGACTCACAAGTTGAA+GGG 0.535256 7:+12306312 None:intergenic
AGGAAGAAACAAGTACCCTA+TGG 0.538949 7:-12306954 MsG0780036713.01.T01:CDS
TGAAGAAATAGAGAAAGAAG+AGG 0.539723 7:-12306365 MsG0780036713.01.T01:CDS
ATTAGTAGCTGAGTACGTCT+TGG 0.541417 7:-12306680 MsG0780036713.01.T01:CDS
TCAGAAAAGAAGAAAAGGTA+TGG 0.541568 7:-12306428 MsG0780036713.01.T01:CDS
CTGCTCCTACTAAAGGAAAG+AGG 0.546365 7:-12306582 MsG0780036713.01.T01:CDS
CTTGGAGTCATCTCAACCAT+AGG 0.550102 7:+12306295 None:intergenic
CATAGTCTTCTCTTTGTAGA+CGG 0.550332 7:+12307621 None:intergenic
TTCAGACAGCAATCTTCCAT+AGG 0.552612 7:+12306938 None:intergenic
CCATAGGACTCACAAGTTGA+AGG 0.557869 7:+12306311 None:intergenic
TGCTTCTTTCAAAGAGCAGG+AGG 0.557950 7:-12307100 MsG0780036713.01.T01:CDS
TGCAAAGCGTACCAGAATCT+GGG 0.558940 7:-12307645 MsG0780036713.01.T01:CDS
GAAATAAGGTCTGAAGTGAT+GGG 0.560325 7:-12307319 MsG0780036713.01.T01:CDS
ATTCCAAGAAATAGTCAGGA+AGG 0.562379 7:-12307233 MsG0780036713.01.T01:CDS
GACTCCAAGAATGAAAAGGA+TGG 0.562425 7:-12306281 MsG0780036713.01.T01:CDS
AGTAAATTGCTAGCTTCTGT+TGG 0.575517 7:+12307059 None:intergenic
TGAACTATTAAGGATTCCCA+TGG 0.576043 7:+12307592 None:intergenic
GGAGATTCACAACAGAATGT+TGG 0.576197 7:-12307140 MsG0780036713.01.T01:CDS
GATAATCTCAGTCTCTTCTG+TGG 0.586564 7:+12306753 None:intergenic
TGATGTAGGATTCATATCCA+TGG 0.586982 7:+12307354 None:intergenic
ATGCTCTATAAAGTTCATCA+AGG 0.587244 7:-12306809 MsG0780036713.01.T01:CDS
AAAGAAAGGGAAATTGGCCA+TGG 0.587246 7:-12307371 MsG0780036713.01.T01:CDS
TCAGACAGCAATCTTCCATA+GGG 0.588685 7:+12306939 None:intergenic
TGCTCCTACTAAAGGAAAGA+GGG 0.589238 7:-12306581 MsG0780036713.01.T01:CDS
AATAGTTCAAGTAGAGTCAC+CGG 0.592431 7:-12307578 MsG0780036713.01.T01:CDS
AAGTCTCTAAAGATGAAAAG+TGG 0.594049 7:-12306786 MsG0780036713.01.T01:CDS
AAGTACGAAGTAAACATGGA+AGG 0.600633 7:-12307535 MsG0780036713.01.T01:CDS
CAAGAAGTACGAAGTAAACA+TGG 0.601148 7:-12307539 MsG0780036713.01.T01:CDS
AAAGGAAAGATGCAGAAGGT+TGG 0.604356 7:-12306466 MsG0780036713.01.T01:CDS
GCTTGTAGAATGCATGCAGA+GGG 0.604972 7:-12307259 MsG0780036713.01.T01:CDS
GAAGACTATGGATATTCCAT+GGG 0.608051 7:-12307608 MsG0780036713.01.T01:CDS
AAGTTGTAAGCAAACAAGCT+GGG 0.608587 7:-12307396 MsG0780036713.01.T01:CDS
GCCCAAGCTGAAGAAGAAGA+AGG 0.611574 7:-12306338 MsG0780036713.01.T01:CDS
TGTAATGGATCATCTCTGCT+GGG 0.612052 7:-12306999 MsG0780036713.01.T01:CDS
TTGAATGAAGCAAAATCCAC+CGG 0.612805 7:+12307559 None:intergenic
AACATATGTGAACTTGGTCA+AGG 0.631522 7:-12307461 MsG0780036713.01.T01:CDS
GCTTCTTTCAAAGAGCAGGA+GGG 0.637986 7:-12307099 MsG0780036713.01.T01:CDS
TGAAATCTTTCATCAAGGAA+GGG 0.641192 7:-12306919 MsG0780036713.01.T01:intron
ATAGGACTCACAAGTTGAAG+GGG 0.642424 7:+12306313 None:intergenic
GGATAAAGGAAAGATGCAGA+AGG 0.648967 7:-12306470 MsG0780036713.01.T01:CDS
AGAAGAGACTGAGATTATCA+GGG 0.649509 7:-12306749 MsG0780036713.01.T01:CDS
AGCTTGTAGAATGCATGCAG+AGG 0.652035 7:-12307260 MsG0780036713.01.T01:CDS
AGAAGTTGCAAATTCTCAGG+AGG 0.660047 7:-12306656 MsG0780036713.01.T01:CDS
GATGATCCATTACATATCTG+GGG 0.671983 7:+12307008 None:intergenic
TACTACAACTCTCTTCTGGG+TGG 0.679831 7:-12307190 MsG0780036713.01.T01:CDS
AATCACCAAAGAGCAGCTGG+AGG 0.697673 7:-12306395 MsG0780036713.01.T01:CDS
AGTTCAAGTAGAGTCACCGG+TGG 0.701435 7:-12307575 MsG0780036713.01.T01:CDS
CATTCCTATAACTATCACTG+AGG 0.785445 7:-12307296 MsG0780036713.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTATAGCTTAGAAATA+AGG - Chr7:12306580-12306599 MsG0780036713.01.T01:CDS 20.0%
!!! TGATTTTATATCAGACAAAA+AGG - Chr7:12307671-12307690 MsG0780036713.01.T01:CDS 20.0%
! TCTAAGCTATAAAATGATGT+AGG + Chr7:12306576-12306595 None:intergenic 25.0%
AAGTATTTCGAGATGCTAAA+TGG - Chr7:12306426-12306445 MsG0780036713.01.T01:CDS 30.0%
AATTTACTTCATGGCTATTC+TGG - Chr7:12306869-12306888 MsG0780036713.01.T01:intron 30.0%
ACTAATTTGGCTAAGATTTC+AGG + Chr7:12307219-12307238 None:intergenic 30.0%
AGATGATCCATTACATATCT+GGG + Chr7:12306909-12306928 None:intergenic 30.0%
AGTATTTCGAGATGCTAAAT+GGG - Chr7:12306427-12306446 MsG0780036713.01.T01:CDS 30.0%
ATGCTCTATAAAGTTCATCA+AGG - Chr7:12307104-12307123 MsG0780036713.01.T01:CDS 30.0%
ATTCCTCAGAAAAGAAGAAA+AGG - Chr7:12307480-12307499 MsG0780036713.01.T01:CDS 30.0%
CTAATTTGGCTAAGATTTCA+GGG + Chr7:12307218-12307237 None:intergenic 30.0%
TCAGAAAAGAAGAAAAGGTA+TGG - Chr7:12307485-12307504 MsG0780036713.01.T01:CDS 30.0%
TCTTATAGTGCTTTCGTTTA+TGG + Chr7:12306940-12306959 None:intergenic 30.0%
TGAAATCTTTCATCAAGGAA+GGG - Chr7:12306994-12307013 MsG0780036713.01.T01:CDS 30.0%
TGAAGAAATAGAGAAAGAAG+AGG - Chr7:12307548-12307567 MsG0780036713.01.T01:CDS 30.0%
TGACTCTACTTGAACTATTA+AGG + Chr7:12306334-12306353 None:intergenic 30.0%
TTGCTTTCCTTAAAAATGGA+AGG + Chr7:12307195-12307214 None:intergenic 30.0%
! AAGTCTCTAAAGATGAAAAG+TGG - Chr7:12307127-12307146 MsG0780036713.01.T01:CDS 30.0%
! ATACCTTTTCTTCTTTTCTG+AGG + Chr7:12307486-12307505 None:intergenic 30.0%
!! ATAAACGAAAGCACTATAAG+AGG - Chr7:12306939-12306958 MsG0780036713.01.T01:CDS 30.0%
AAACTTCCCCAGATATGTAA+TGG - Chr7:12306899-12306918 MsG0780036713.01.T01:intron 35.0%
AAAGTTGTAAGCAAACAAGC+TGG - Chr7:12306516-12306535 MsG0780036713.01.T01:CDS 35.0%
AACATATGTGAACTTGGTCA+AGG - Chr7:12306452-12306471 MsG0780036713.01.T01:CDS 35.0%
AAGTACGAAGTAAACATGGA+AGG - Chr7:12306378-12306397 MsG0780036713.01.T01:CDS 35.0%
AAGTTGTAAGCAAACAAGCT+GGG - Chr7:12306517-12306536 MsG0780036713.01.T01:CDS 35.0%
AATAGTTCAAGTAGAGTCAC+CGG - Chr7:12306335-12306354 MsG0780036713.01.T01:CDS 35.0%
ACTTCCTCAGTGATAGTTAT+AGG + Chr7:12306624-12306643 None:intergenic 35.0%
AGAAGACTATGGATATTCCA+TGG - Chr7:12306304-12306323 MsG0780036713.01.T01:CDS 35.0%
AGAAGAGACTGAGATTATCA+GGG - Chr7:12307164-12307183 MsG0780036713.01.T01:CDS 35.0%
AGATGACTCCAAGAATGAAA+AGG - Chr7:12307628-12307647 MsG0780036713.01.T01:CDS 35.0%
ATCAGATTCTGAACTAGTTC+TGG + Chr7:12307310-12307329 None:intergenic 35.0%
ATTCCAAGAAATAGTCAGGA+AGG - Chr7:12306680-12306699 MsG0780036713.01.T01:CDS 35.0%
CATAGTCTTCTCTTTGTAGA+CGG + Chr7:12306295-12306314 None:intergenic 35.0%
CATTCCTATAACTATCACTG+AGG - Chr7:12306617-12306636 MsG0780036713.01.T01:CDS 35.0%
CCTTTATCCTTGATAGAAAC+AGG + Chr7:12307432-12307451 None:intergenic 35.0%
CTGAAATCTTTCATCAAGGA+AGG - Chr7:12306993-12307012 MsG0780036713.01.T01:CDS 35.0%
GAAGACTATGGATATTCCAT+GGG - Chr7:12306305-12306324 MsG0780036713.01.T01:CDS 35.0%
GAAGATTCCAAGAAATAGTC+AGG - Chr7:12306676-12306695 MsG0780036713.01.T01:CDS 35.0%
GAAGCTAGCAATTTACTTCA+TGG - Chr7:12306860-12306879 MsG0780036713.01.T01:intron 35.0%
GAGATGATCCATTACATATC+TGG + Chr7:12306910-12306929 None:intergenic 35.0%
GATGATCCATTACATATCTG+GGG + Chr7:12306908-12306927 None:intergenic 35.0%
TGAACTATTAAGGATTCCCA+TGG + Chr7:12306324-12306343 None:intergenic 35.0%
TGATGTAGGATTCATATCCA+TGG + Chr7:12306562-12306581 None:intergenic 35.0%
TTGAATGAAGCAAAATCCAC+CGG + Chr7:12306357-12306376 None:intergenic 35.0%
TTGACCAAGTTCACATATGT+TGG + Chr7:12306453-12306472 None:intergenic 35.0%
TTGTGAATCTCCATTTCAGA+AGG + Chr7:12306765-12306784 None:intergenic 35.0%
! AAGAAAAGGTATGGCAGATT+TGG - Chr7:12307494-12307513 MsG0780036713.01.T01:CDS 35.0%
! AGAAATAAGGTCTGAAGTGA+TGG - Chr7:12306593-12306612 MsG0780036713.01.T01:CDS 35.0%
! AGGGTTGCTTTCCTTAAAAA+TGG + Chr7:12307199-12307218 None:intergenic 35.0%
! AGTAAATTGCTAGCTTCTGT+TGG + Chr7:12306857-12306876 None:intergenic 35.0%
! AGTTGTAGTAACCTTTTAGC+AGG + Chr7:12306713-12306732 None:intergenic 35.0%
! CAAGAAGTACGAAGTAAACA+TGG - Chr7:12306374-12306393 MsG0780036713.01.T01:CDS 35.0%
! CTCTAAAGATGAAAAGTGGT+TGG - Chr7:12307131-12307150 MsG0780036713.01.T01:CDS 35.0%
! CTGTCTGAAATCTTTCATCA+AGG - Chr7:12306989-12307008 MsG0780036713.01.T01:CDS 35.0%
! GAAATAAGGTCTGAAGTGAT+GGG - Chr7:12306594-12306613 MsG0780036713.01.T01:CDS 35.0%
! TCTTCCATCCTTTTCATTCT+TGG + Chr7:12307639-12307658 None:intergenic 35.0%
! TGTTTGCTTACAACTTTTGC+AGG + Chr7:12306513-12306532 None:intergenic 35.0%
!! AGCTAAACCTGTTTCTATCA+AGG - Chr7:12307422-12307441 MsG0780036713.01.T01:CDS 35.0%
!! CCTGTTTCTATCAAGGATAA+AGG - Chr7:12307429-12307448 MsG0780036713.01.T01:CDS 35.0%
!! GGACTTTCCTTCCATTTTTA+AGG - Chr7:12307185-12307204 MsG0780036713.01.T01:CDS 35.0%
AAACAAGCTGGGTCAAAGAA+AGG - Chr7:12306528-12306547 MsG0780036713.01.T01:CDS 40.0%
AAAGAAAGGGAAATTGGCCA+TGG - Chr7:12306542-12306561 MsG0780036713.01.T01:CDS 40.0%
AAAGGAAAGATGCAGAAGGT+TGG - Chr7:12307447-12307466 MsG0780036713.01.T01:CDS 40.0%
AACAAGCTGGGTCAAAGAAA+GGG - Chr7:12306529-12306548 MsG0780036713.01.T01:CDS 40.0%
AAGGAAGATGTCCTGCTAAA+AGG - Chr7:12306699-12306718 MsG0780036713.01.T01:CDS 40.0%
AATCTCCATTTCAGAAGGCT+TGG + Chr7:12306760-12306779 None:intergenic 40.0%
AGAAGTTGCAAATTCTCAGG+AGG - Chr7:12307257-12307276 MsG0780036713.01.T01:CDS 40.0%
AGGAAGAAACAAGTACCCTA+TGG - Chr7:12306959-12306978 MsG0780036713.01.T01:CDS 40.0%
AGGTTACTACAACTCTCTTC+TGG - Chr7:12306719-12306738 MsG0780036713.01.T01:CDS 40.0%
ATTAGTAGCTGAGTACGTCT+TGG - Chr7:12307233-12307252 MsG0780036713.01.T01:CDS 40.0%
CAGAAGAGACTGAGATTATC+AGG - Chr7:12307163-12307182 MsG0780036713.01.T01:CDS 40.0%
CGTCTACAAAGAGAAGACTA+TGG - Chr7:12306293-12306312 MsG0780036713.01.T01:CDS 40.0%
GACGTACTCAGCTACTAATT+TGG + Chr7:12307232-12307251 None:intergenic 40.0%
GACTCCAAGAATGAAAAGGA+TGG - Chr7:12307632-12307651 MsG0780036713.01.T01:CDS 40.0%
GATAATCTCAGTCTCTTCTG+TGG + Chr7:12307163-12307182 None:intergenic 40.0%
GATTGCTTCTTTCAAAGAGC+AGG - Chr7:12306810-12306829 MsG0780036713.01.T01:CDS 40.0%
GGAAGAAGTTGCAAATTCTC+AGG - Chr7:12307254-12307273 MsG0780036713.01.T01:CDS 40.0%
GGAGATTCACAACAGAATGT+TGG - Chr7:12306773-12306792 MsG0780036713.01.T01:CDS 40.0%
GGATAAAGGAAAGATGCAGA+AGG - Chr7:12307443-12307462 MsG0780036713.01.T01:CDS 40.0%
GGTTACTACAACTCTCTTCT+GGG - Chr7:12306720-12306739 MsG0780036713.01.T01:CDS 40.0%
TCAGACAGCAATCTTCCATA+GGG + Chr7:12306977-12306996 None:intergenic 40.0%
TGCTCCTACTAAAGGAAAGA+GGG - Chr7:12307332-12307351 MsG0780036713.01.T01:CDS 40.0%
TGGAGTTCTTAAAGAGGACA+AGG - Chr7:12307020-12307039 MsG0780036713.01.T01:CDS 40.0%
TGGGTCAAAGAAAGGGAAAT+TGG - Chr7:12306536-12306555 MsG0780036713.01.T01:CDS 40.0%
TTCAGACAGCAATCTTCCAT+AGG + Chr7:12306978-12306997 None:intergenic 40.0%
TTCTGACTCAGTACTAGTTC+TGG + Chr7:12307358-12307377 None:intergenic 40.0%
! ATAGGACTCACAAGTTGAAG+GGG + Chr7:12307603-12307622 None:intergenic 40.0%
! CATAGGACTCACAAGTTGAA+GGG + Chr7:12307604-12307623 None:intergenic 40.0%
! CTTCCTTCCTGACTATTTCT+TGG + Chr7:12306686-12306705 None:intergenic 40.0%
! TGAACTTGGTCAAGGACTTT+TGG - Chr7:12306460-12306479 MsG0780036713.01.T01:CDS 40.0%
!! ATGTAATGGATCATCTCTGC+TGG - Chr7:12306913-12306932 MsG0780036713.01.T01:intron 40.0%
!! TGTAATGGATCATCTCTGCT+GGG - Chr7:12306914-12306933 MsG0780036713.01.T01:intron 40.0%
AGCCTTCTTCTTCTTCAGCT+TGG + Chr7:12307580-12307599 None:intergenic 45.0%
AGCTTGTAGAATGCATGCAG+AGG - Chr7:12306653-12306672 MsG0780036713.01.T01:CDS 45.0%
ATGCAAAGCGTACCAGAATC+TGG - Chr7:12306267-12306286 MsG0780036713.01.T01:CDS 45.0%
CCTTCAACTTGTGAGTCCTA+TGG - Chr7:12307602-12307621 MsG0780036713.01.T01:CDS 45.0%
CTGAAAGGACTATCAGTAGC+AGG - Chr7:12307076-12307095 MsG0780036713.01.T01:CDS 45.0%
CTGCTCCTACTAAAGGAAAG+AGG - Chr7:12307331-12307350 MsG0780036713.01.T01:CDS 45.0%
CTTGGAGTCATCTCAACCAT+AGG + Chr7:12307621-12307640 None:intergenic 45.0%
GAGGAAGCTGCTCTTACTAA+AGG - Chr7:12307276-12307295 MsG0780036713.01.T01:CDS 45.0%
GCCTTCTTCTTCTTCAGCTT+GGG + Chr7:12307579-12307598 None:intergenic 45.0%
GCTTCTTTCAAAGAGCAGGA+GGG - Chr7:12306814-12306833 MsG0780036713.01.T01:CDS 45.0%
GCTTGTAGAATGCATGCAGA+GGG - Chr7:12306654-12306673 MsG0780036713.01.T01:CDS 45.0%
TACTACAACTCTCTTCTGGG+TGG - Chr7:12306723-12306742 MsG0780036713.01.T01:CDS 45.0%
TCGAAGTCTCTACTGCTGAA+AGG - Chr7:12307061-12307080 MsG0780036713.01.T01:CDS 45.0%
TCTGATGCTGCTCCTACTAA+AGG - Chr7:12307324-12307343 MsG0780036713.01.T01:CDS 45.0%
TGCAAAGCGTACCAGAATCT+GGG - Chr7:12306268-12306287 MsG0780036713.01.T01:CDS 45.0%
TGCTTCTTTCAAAGAGCAGG+AGG - Chr7:12306813-12306832 MsG0780036713.01.T01:CDS 45.0%
TGGGCCAACATATGTGAACT+TGG - Chr7:12306446-12306465 MsG0780036713.01.T01:CDS 45.0%
! AGATGCCAAGCCTTCTGAAA+TGG - Chr7:12306752-12306771 MsG0780036713.01.T01:CDS 45.0%
! CCATAGGACTCACAAGTTGA+AGG + Chr7:12307605-12307624 None:intergenic 45.0%
! GCTAGCTTCTGTTGGTTGTT+GGG + Chr7:12306849-12306868 None:intergenic 45.0%
! TGCTAGCTTCTGTTGGTTGT+TGG + Chr7:12306850-12306869 None:intergenic 45.0%
AATCACCAAAGAGCAGCTGG+AGG - Chr7:12307518-12307537 MsG0780036713.01.T01:CDS 50.0%
AGTTCAAGTAGAGTCACCGG+TGG - Chr7:12306338-12306357 MsG0780036713.01.T01:CDS 50.0%
CTGGCCCTCTTTCCTTTAGT+AGG + Chr7:12307339-12307358 None:intergenic 50.0%
GCCCAAGCTGAAGAAGAAGA+AGG - Chr7:12307575-12307594 MsG0780036713.01.T01:CDS 50.0%
GGTAATCACCAAAGAGCAGC+TGG - Chr7:12307515-12307534 MsG0780036713.01.T01:CDS 50.0%
TTGTAGACGGACCCAGATTC+TGG + Chr7:12306282-12306301 None:intergenic 50.0%
! CTTTCATCAAGGAAGGGTGC+TGG - Chr7:12307000-12307019 MsG0780036713.01.T01:CDS 50.0%
! GCTTCTGTTGGTTGTTGGGT+TGG + Chr7:12306845-12306864 None:intergenic 50.0%
!! GGGTGCTGGAGTTCTTAAAG+AGG - Chr7:12307014-12307033 MsG0780036713.01.T01:CDS 50.0%
AGCTTCCTCCAGCTGCTCTT+TGG + Chr7:12307526-12307545 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 12306225 12307710 12306225 ID=MsG0780036713.01;Name=MsG0780036713.01
Chr7 mRNA 12306225 12307710 12306225 ID=MsG0780036713.01.T01;Parent=MsG0780036713.01;Name=MsG0780036713.01.T01;_AED=0.49;_eAED=1.00;_QI=0|0|0|1|0|0|2|0|468
Chr7 exon 12306920 12307710 12306920 ID=MsG0780036713.01.T01:exon:1763;Parent=MsG0780036713.01.T01
Chr7 exon 12306225 12306837 12306225 ID=MsG0780036713.01.T01:exon:1762;Parent=MsG0780036713.01.T01
Chr7 CDS 12306920 12307710 12306920 ID=MsG0780036713.01.T01:cds;Parent=MsG0780036713.01.T01
Chr7 CDS 12306225 12306837 12306225 ID=MsG0780036713.01.T01:cds;Parent=MsG0780036713.01.T01
Gene Sequence

>MsG0780036713.01.T01

ATGGCATCATCAAGCTCAAAAGTTTCAGAATCTACATCAAACATGCAAAGCGTACCAGAATCTGGGTCCGTCTACAAAGAGAAGACTATGGATATTCCATGGGAATCCTTAATAGTTCAAGTAGAGTCACCGGTGGATTTTGCTTCATTCAAGAAGTACGAAGTAAACATGGAAGGATTGATAGAAACTCAGAAGCTGTCTAAGTATTTCGAGATGCTAAATGGGCCAACATATGTGAACTTGGTCAAGGACTTTTGGTTAAAAGCTGAAGTGTACAATGAAAAGCCTGCAAAAGTTGTAAGCAAACAAGCTGGGTCAAAGAAAGGGAAATTGGCCATGGATATGAATCCTACATCATTTTATAGCTTAGAAATAAGGTCTGAAGTGATGGGCATTCCTATAACTATCACTGAGGAAGTTATAGCTAAAGCTTGTAGAATGCATGCAGAGGGAAGATTCCAAGAAATAGTCAGGAAGGAAGATGTCCTGCTAAAAGGTTACTACAACTCTCTTCTGGGTGGAAAGAAAGATGCCAAGCCTTCTGAAATGGAGATTCACAACAGAATGTTGGTGAAATTCAGTAATGATTGCTTCTTTCAAAGAGCAGGAGGGTCTGACCAACCCAACAACCAACAGAAGCTAGCAATTTACTTCATGGCTATTCTGGAAAAGATAAACTTCCCCAGATATGTAATGGATCATCTCTGCTGGGCCATAAACGAAAGCACTATAAGAGGAAGAAACAAGTACCCTATGGAAGATTGCTGTCTGAAATCTTTCATCAAGGAAGGGAGCTTATGCTCTATAAAGTTCATCAAGGAAGTCTCTAAAGATGAAAAGTGGTTGGAGATGACCACAGAAGAGACTGAGATTATCAGGGACTTTCCTTCCATTTTTAAGGAAAGCAACCCTGAAATCTTAGCCAAATTAGTAGCTGAGTACGTCTTGGAAGAAGTTGCAAATTCTCAGGAGGAAGCTGCTCTTACTAAAGGAAAGAGAGCCAGAACTAGTTCAGAATCTGATGCTGCTCCTACTAAAGGAAAGAGGGCCAGAACTAGTACTGAGTCAGAAGCTGCTATTGCTAAATCTGAAAAGCAAAAAGTTGCTAAGTCTGAAGCTAAACCTGTTTCTATCAAGGATAAAGGAAAGATGCAGAAGGTTGGTGCTGCTTCTATTCCTCAGAAAAGAAGAAAAGGTATGGCAGATTTGGTAATCACCAAAGAGCAGCTGGAGGAAGCTCTTGAAGAAATAGAGAAAGAAGAGGTTGAGCCCAAGCTGAAGAAGAAGAAGGCTCCCCTTCAACTTGTGAGTCCTATGGTTGAGATGACTCCAAGAATGAAAAGGATGGAAGATGAACGTGCTTCTGATTTTATATCAGACAAAAAGGAACTAAAAGCACAATAC
Protein sequence

>MsG0780036713.01.T01

MASSSSKVSESTSNMQSVPESGSVYKEKTMDIPWESLIVQVESPVDFASFKKYEVNMEGLIETQKLSKYFEMLNGPTYVNLVKDFWLKAEVYNEKPAKVVSKQAGSKKGKLAMDMNPTSFYSLEIRSEVMGIPITITEEVIAKACRMHAEGRFQEIVRKEDVLLKGYYNSLLGGKKDAKPSEMEIHNRMLVKFSNDCFFQRAGGSDQPNNQQKLAIYFMAILEKINFPRYVMDHLCWAINESTIRGRNKYPMEDCCLKSFIKEGSLCSIKFIKEVSKDEKWLEMTTEETEIIRDFPSIFKESNPEILAKLVAEYVLEEVANSQEEAALTKGKRARTSSESDAAPTKGKRARTSTESEAAIAKSEKQKVAKSEAKPVSIKDKGKMQKVGAASIPQKRRKGMADLVITKEQLEEALEEIEKEEVEPKLKKKKAPLQLVSPMVEMTPRMKRMEDERASDFISDKKELKAQY