AlfalfaGEDB | MsG0780037281.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037281.01

KEGG: -
GO: GO:0004672 GO:0005515 GO:0005524 GO:0006468
PFAM: PF00560 PF07714 PF13855

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037281.01.T01	XP_003622214.1	89.714	768	49	6	1	738	1	768	0	1362

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037281.01.T01	Q8LFN2	39.672	731	381	12	40	728	43	755	2.19E-156	476

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037281.01.T01	G7L4A4	89.714	768	49	6	1	738	1	768	0.0	1362

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180003353.01	MsG0780037281.01	0.809237	2.089624e-50	1.220379e-47
MsG0180004192.01	MsG0780037281.01	0.815244	1.021180e-51	7.002640e-49
MsG0180004466.01	MsG0780037281.01	0.810896	9.178867e-51	5.601211e-48
MsG0280007309.01	MsG0780037281.01	0.817045	4.042336e-52	2.912412e-49
MsG0280007432.01	MsG0780037281.01	0.803096	4.104164e-49	2.044276e-46
MsG0380015870.01	MsG0780037281.01	0.817419	3.330394e-52	2.424176e-49
MsG0680030313.01	MsG0780037281.01	0.808999	2.350258e-50	1.363752e-47
MsG0680030373.01	MsG0780037281.01	0.805320	1.413243e-49	7.454113e-47
MsG0780036660.01	MsG0780037281.01	0.810529	1.101659e-50	6.656525e-48
MsG0780036757.01	MsG0780037281.01	0.801478	8.834190e-49	4.223242e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037281.01.T01	MTR_7g031470	89.714	768	49	6	1	738	1	768	0.0	1362
MsG0780037281.01.T01	MTR_6g023390	68.280	744	207	5	17	734	25	765	0.0	988
MsG0780037281.01.T01	MTR_3g088930	51.203	748	328	9	10	728	13	752	0.0	700
MsG0780037281.01.T01	MTR_7g086420	37.419	775	413	12	8	735	6	755	2.72e-162	488
MsG0780037281.01.T01	MTR_6g027720	36.129	775	435	11	8	738	11	769	8.83e-161	484
MsG0780037281.01.T01	MTR_8g468500	33.506	770	403	13	1	728	6	708	1.01e-118	373
MsG0780037281.01.T01	MTR_5g038600	32.790	613	332	16	171	735	101	681	8.28e-77	261
MsG0780037281.01.T01	MTR_5g038600	39.271	247	139	5	9	253	18	255	7.65e-40	157
MsG0780037281.01.T01	MTR_8g044230	41.129	372	201	5	9	378	11	366	2.08e-69	244
MsG0780037281.01.T01	MTR_8g044230	38.199	322	162	8	443	730	501	819	2.81e-57	209

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037281.01.T01	AT5G14210	54.510	765	309	7	6	734	7	768	0.0	769
MsG0780037281.01.T01	AT5G14210	52.513	796	308	9	6	734	7	799	0.0	754
MsG0780037281.01.T01	AT5G14210	56.355	653	272	5	6	648	7	656	0.0	688
MsG0780037281.01.T01	AT3G03770	39.672	731	381	12	40	728	43	755	2.24e-157	476
MsG0780037281.01.T01	AT3G03770	39.672	731	381	12	40	728	43	755	2.24e-157	476
MsG0780037281.01.T01	AT3G03770	39.672	731	381	12	40	728	43	755	2.24e-157	476
MsG0780037281.01.T01	AT5G63410	45.517	580	258	13	204	734	108	678	3.98e-141	430
MsG0780037281.01.T01	AT5G63410	45.620	274	143	4	4	272	3	275	1.05e-57	208
MsG0780037281.01.T01	AT1G14390	33.509	761	382	19	19	728	25	712	1.01e-93	308
MsG0780037281.01.T01	AT2G02780	31.953	773	389	16	19	728	25	723	9.85e-89	295

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Find 107 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACTTAGATTAACCAA+AGG	0.639857	7:+23036841	None:intergenic
AAAGACTAACCAAATTTGGA+TGG	0.557025	7:+23035238	None:intergenic
AAAGAGAACAAAGAAGCCGG+AGG	0.703137	7:+23036511	None:intergenic
AAAGCTTAACCATCCAAATT+TGG	0.204026	7:-23035247	MsG0780037281.01.T01:CDS
AACTGAGCTCAAAATCATGG+GGG	0.744925	7:-23037184	MsG0780037281.01.T01:CDS
AACTTGTTTCTAAAACAACC+TGG	0.570575	7:+23034066	None:intergenic
AATACCGTGACAACCGATTT+CGG	0.354387	7:+23036634	None:intergenic
AATAGAATCTGCATCTGCTG+AGG	0.629738	7:+23032785	None:intergenic
AATCTGCATCTGCTGAGGCT+TGG	0.505712	7:+23032790	None:intergenic
AATTCTCAAGCTCAAAAGCA+TGG	0.571029	7:-23036298	MsG0780037281.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACTAACCAAATTTGGA+TGG	+	Chr7:23034940-23034959	None:intergenic	30.0%
AAAGCTTAACCATCCAAATT+TGG	-	Chr7:23034928-23034947	MsG0780037281.01.T01:intron	30.0%
AACATGTAAACCAAAAAGTG+TGG	+	Chr7:23033476-23033495	None:intergenic	30.0%
AATGATTGTTCTTTCCATTG+AGG	-	Chr7:23035556-23035575	MsG0780037281.01.T01:intron	30.0%
ACAAAATCTCAAAGCTAAGT+TGG	-	Chr7:23034895-23034914	MsG0780037281.01.T01:intron	30.0%
ACAACATTGACAAGGTTAAA+AGG	-	Chr7:23033106-23033125	MsG0780037281.01.T01:intron	30.0%
ACCAAAGGTTCAAAGAAATT+AGG	+	Chr7:23033322-23033341	None:intergenic	30.0%
ACTAAAATGGTCTGATAGAT+TGG	-	Chr7:23036033-23036052	MsG0780037281.01.T01:intron	30.0%
AGGTTTAAAGGTTCTTAGTT+TGG	-	Chr7:23033126-23033145	MsG0780037281.01.T01:intron	30.0%
ATACCATAGTCACTTAGTTT+GGG	+	Chr7:23036172-23036191	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	23032776	23037421	23032776	ID=MsG0780037281.01;Name=MsG0780037281.01
Chr7	mRNA	23032776	23037421	23032776	ID=MsG0780037281.01.T01;Parent=MsG0780037281.01;Name=MsG0780037281.01.T01;_AED=0.40;_eAED=0.41;_QI=0\|0\|0\|1\|0.6\|0.83\|6\|0\|738
Chr7	exon	23036071	23037421	23036071	ID=MsG0780037281.01.T01:exon:32012;Parent=MsG0780037281.01.T01
Chr7	exon	23035658	23035791	23035658	ID=MsG0780037281.01.T01:exon:32013;Parent=MsG0780037281.01.T01
Chr7	exon	23035133	23035376	23035133	ID=MsG0780037281.01.T01:exon:32014;Parent=MsG0780037281.01.T01
Chr7	exon	23033938	23034183	23033938	ID=MsG0780037281.01.T01:exon:32015;Parent=MsG0780037281.01.T01
Chr7	exon	23033843	23033868	23033843	ID=MsG0780037281.01.T01:exon:32016;Parent=MsG0780037281.01.T01
Chr7	exon	23032776	23032991	23032776	ID=MsG0780037281.01.T01:exon:32017;Parent=MsG0780037281.01.T01
Chr7	CDS	23036071	23037421	23036071	ID=MsG0780037281.01.T01:cds;Parent=MsG0780037281.01.T01
Chr7	CDS	23035658	23035791	23035658	ID=MsG0780037281.01.T01:cds;Parent=MsG0780037281.01.T01
Chr7	CDS	23035133	23035376	23035133	ID=MsG0780037281.01.T01:cds;Parent=MsG0780037281.01.T01
Chr7	CDS	23033938	23034183	23033938	ID=MsG0780037281.01.T01:cds;Parent=MsG0780037281.01.T01
Chr7	CDS	23033843	23033868	23033843	ID=MsG0780037281.01.T01:cds;Parent=MsG0780037281.01.T01
Chr7	CDS	23032776	23032991	23032776	ID=MsG0780037281.01.T01:cds;Parent=MsG0780037281.01.T01

Gene Sequence

>MsG0780037281.01.T01

ATGAGATATTTATATCTCAATCTTGTGGTTCTTTCTTTGTTTTTCTCTATCCACAGTACTCATGAGCTACAATTTGCTCAAACTCAAGTCTTGTTACAGTTAAGGAAGTACCTGGAGTATCCAACTTCTTTGCAAATTCTAGAAAATTACAATTTAGACCCTTGTAGCATTCCTCCATCTGAGCATTTGAGCATTAAATGTGAGGGCAATTCAGTAACTGAGCTCAAAATCATGGGGGACAATCATAAACATGTAAAGGTTGAAAGTTTCAATGGATTTGCAGTTCCTAATCATACTCTATCCAAAAGTTTCTCTATTGATTCTTTTGTCACAACATTGACAAGGTTAAAAGGTTTAAAGGTTCTTAGTTTGGTTTCTTTAGGAATTTGGGGTCCACTTTCTGATAAAATTCATAGGCTATCTTTGCTTGAAGTTTTGGATTTGAGTTCAAATTTTTTATTTGGTTCTATTCCACCAAAGATAGCTACATTGGTGAATCTTCAAATATTAACACTTGATGAAAATTATTTTAACACTACAATGCCTAATTTCTTTGAACCTTTGGTTAATCTAAGTATTTTGAGTTTGAAAAACAATAATTTAAAGGGCTCATTCCCTTCTTCACTATGCAAAATCAAAACTCTTACTGATATTTCCTTGTCACATAATGAATTATCTGGTGAGTTGCCTAATCTCACCACACTTTTTGGTTTACATGTTTTGGATTTAAGAGAAAATGGTTTTGATTCTGAGCTACCATTGATGCCGAAATCGGTTGTCACGGTATTGCTAAGTAAAAACTCATTCTCAGGTGAGATTCCTAGTCAATTTGGTGAGTTGAATCAGCTTCAACATCTTGATCTTTCGTCGAATCGTCTTAGCGGGGTTCCTCCGGCTTCTTTGTTCTCTTTGACAAATATTAGTTATTTGAATTTAGCAAAAAATGTGCTAAGTGGTTCAATTCCACAGAAACTAAAATGTGGAAGCAAGCTTGGGTTTGTGGATATTTCTGGTAACATGTTAAATGGCTTACTTCCTTCTTGTTTGGAAAGTACTTCTGATAGAAGAGTTGTTAGATTTGGTGGAAACTGTTTATCTGTTAATTCTCAAGCTCAAAAGCATGGTTCTTATTGTAAAGAGTCTAGTTCCGGAAAGACAAAATTTTGGAGATGGGAAGTTGTTGCTGCAATTGCCATCATTGTCGTAGTTTTTCTCTTGCTTTTAGCTTTCGGAATTTTGTTTTACAGAAAGTGTCATTCAAGAGAGATTTATAGGCATGAGATGTTGCCGAAGATTGTTCAAGATAACAAATCAACAACGGGAGTTTCCTCTGAACTCCTTGCTAGTGCAAGATATATTTCTCAAAAAATGAAGCTAGGGACACAAGCTACTCCAACTTGTAGGCACTTTTCAATTGAAGAGTTGAAGGAAATTACAAGAAACTTTGATTTGTCAACTTATATTGGTGAAGGATCTGTAGGAAAGCTGTACAAAGGTAAACTAGAGAATGGATCTTATGTGATGATAAGAACATTGACTCTGAGAAAGAAGTTCTCAACACAAAATCTCAAAGCTAAGTTGGATTTACTATCAAAGCTTAACCATCCAAATTTGGTTAGTCTTTTGGGCCATTGTATCGATGGTGGTGGAAAAGATGTTACTAGTACCCACAAACTTCATCTTGTTTATGAGTATGTGCAAAATGGCGATTATCGTACCCATTTGTCAGAATTTTCACTAGATAAGGCACTAAAATGGTCTGATAGATTGGCAATTTTAATTGGAGTTGCCAAGGCTGTGCATTTTTTACACACTGGAATTATACCAGGTTGTTTTAGAAACAAGTTAAAGACGAACAATGTTTTACTTGACGAACATCGCTTTCCCAAACTAAGTGACTATGGTATATCTATGATCGCTGAAGAGATCGAAAACATTCAGGTATTGTTGTTTGATATTTTATTCAGATATATAAGCAAAGGAACTGAATCCAAAATCTTGGCATCGTTTGATAGTCATGATGGTAGAAAAAGAATTGTAGATCCGGTAGTGTTGACAACTTGCTGTCAAGAGTCTTTAACAATTGCAATATCTATCACAACTAAATGTATATCTCCACAATCCTCATCTCGTCCTTCTTTTGAAGATGTCCTTTGGAATTTACAGTATGCAGCTCAAGTCCAAGCCTCAGCAGATGCAGATTCTATTATATCCTAG

Protein sequence

>MsG0780037281.01.T01

MRYLYLNLVVLSLFFSIHSTHELQFAQTQVLLQLRKYLEYPTSLQILENYNLDPCSIPPSEHLSIKCEGNSVTELKIMGDNHKHVKVESFNGFAVPNHTLSKSFSIDSFVTTLTRLKGLKVLSLVSLGIWGPLSDKIHRLSLLEVLDLSSNFLFGSIPPKIATLVNLQILTLDENYFNTTMPNFFEPLVNLSILSLKNNNLKGSFPSSLCKIKTLTDISLSHNELSGELPNLTTLFGLHVLDLRENGFDSELPLMPKSVVTVLLSKNSFSGEIPSQFGELNQLQHLDLSSNRLSGVPPASLFSLTNISYLNLAKNVLSGSIPQKLKCGSKLGFVDISGNMLNGLLPSCLESTSDRRVVRFGGNCLSVNSQAQKHGSYCKESSSGKTKFWRWEVVAAIAIIVVVFLLLLAFGILFYRKCHSREIYRHEMLPKIVQDNKSTTGVSSELLASARYISQKMKLGTQATPTCRHFSIEELKEITRNFDLSTYIGEGSVGKLYKGKLENGSYVMIRTLTLRKKFSTQNLKAKLDLLSKLNHPNLVSLLGHCIDGGGKDVTSTHKLHLVYEYVQNGDYRTHLSEFSLDKALKWSDRLAILIGVAKAVHFLHTGIIPGCFRNKLKTNNVLLDEHRFPKLSDYGISMIAEEIENIQVLLFDILFRYISKGTESKILASFDSHDGRKRIVDPVVLTTCCQESLTIAISITTKCISPQSSSRPSFEDVLWNLQYAAQVQASADADSIIS*