AlfalfaGEDB | MsG0880041954.01

M. sativa cultivar ZhongmuNo.1 / MsG0880041954.01

KEGG: -
GO: GO:0005515
PFAM: PF01535 PF07466 PF13812

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041954.01.T01	XP_013443893.2	90.799	413	15	1	33	422	128	540	0	770

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041954.01.T01	Q8LPS6	56.098	410	150	4	33	419	118	520	6.69E-157	470

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041954.01.T01	A0A072TWM7	91.133	406	13	1	40	422	1	406	0.0	759

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048727.01	MsG0880041954.01	0.813975	1.949241e-51	1.291568e-48
MsG0080048773.01	MsG0880041954.01	0.813987	1.937321e-51	1.284097e-48
MsG0080048801.01	MsG0880041954.01	0.813220	2.857923e-51	1.855167e-48
MsG0080048820.01	MsG0880041954.01	0.811583	6.511925e-51	4.046231e-48
MsG0080048876.01	MsG0880041954.01	0.802008	6.876942e-49	3.331920e-46
MsG0080048878.01	MsG0880041954.01	0.808632	2.815960e-50	1.618162e-47
MsG0080048925.01	MsG0880041954.01	0.806018	1.008199e-49	5.414115e-47
MsG0080049040.01	MsG0880041954.01	0.817825	2.696805e-52	1.984974e-49
MsG0080049068.01	MsG0880041954.01	0.837834	4.113431e-57	5.409225e-54
MsG0180000354.01	MsG0880041954.01	0.814379	1.587826e-51	1.063735e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041954.01.T01	MTR_8g007375	91.133	406	13	1	40	422	1	406	0.0	759
MsG0880041954.01.T01	MTR_7g114660	68.421	285	39	6	522	792	143	390	3.39e-110	342
MsG0880041954.01.T01	MTR_8g465010	84.878	205	16	3	595	792	189	385	6.85e-107	333
MsG0880041954.01.T01	MTR_8g031520	97.260	146	4	0	33	178	155	300	8.06e-95	298
MsG0880041954.01.T01	MTR_8g031510	82.081	173	8	1	273	422	1	173	7.52e-91	283
MsG0880041954.01.T01	MTR_8g069570	32.242	397	237	4	50	415	89	484	6.45e-64	222
MsG0880041954.01.T01	MTR_1g072300	32.979	376	224	5	33	383	88	460	8.59e-61	214
MsG0880041954.01.T01	MTR_2g025330	54.187	203	35	5	177	356	80	247	8.36e-57	196
MsG0880041954.01.T01	MTR_2g025330	45.669	127	56	2	36	160	21	136	6.49e-26	108
MsG0880041954.01.T01	MTR_3g099753	31.180	356	229	4	33	376	88	439	2.56e-55	199

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880041954.01.T01	AT1G02150	56.098	410	150	4	33	419	118	520	6.82e-158	470
MsG0880041954.01.T01	AT1G54520	53.061	294	85	6	515	792	135	391	1.36e-83	272
MsG0880041954.01.T01	AT1G60770	30.890	382	235	3	17	373	60	437	1.50e-59	210
MsG0880041954.01.T01	AT1G02370	36.646	322	194	5	33	350	122	437	7.20e-59	209
MsG0880041954.01.T01	AT4G01990	37.063	286	178	1	33	318	91	374	9.86e-58	205
MsG0880041954.01.T01	AT5G27460	34.824	313	199	2	33	341	89	400	8.57e-56	200
MsG0880041954.01.T01	AT4G02820	30.709	381	230	7	33	387	112	484	3.05e-55	199
MsG0880041954.01.T01	AT2G20710	36.893	309	192	3	33	340	89	395	9.10e-55	197
MsG0880041954.01.T01	AT2G20710	37.543	293	181	2	49	340	9	300	5.54e-54	192
MsG0880041954.01.T01	AT4G21705	29.157	415	262	6	31	415	74	486	3.61e-48	178

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Find 186 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTGATGAAGAGACGC+TGG	0.618378	8:+1669214	MsG0880041954.01.T01:CDS
AAACTCAGGAGATAATGAAA+AGG	0.565979	8:-1664115	None:intergenic
AAAGCAGGGTATAGAAGAAG+GGG	0.588718	8:+1669154	MsG0880041954.01.T01:CDS
AAAGTAAATTACCTGAAGCT+TGG	0.452760	8:-1667263	None:intergenic
AAATGAAAATGATACTCTCT+TGG	0.440327	8:+1670078	MsG0880041954.01.T01:CDS
AAATGATACTCTCTTGGAAC+AGG	0.458709	8:+1670084	MsG0880041954.01.T01:CDS
AACCACCATACTCAAGCTTC+AGG	0.415007	8:+1667557	MsG0880041954.01.T01:CDS
AACCACCGTACCCAAGCTTC+AGG	0.429695	8:+1667252	MsG0880041954.01.T01:CDS
AACTCTGGACTCGGTTGCGA+TGG	0.472372	8:-1667049	None:intergenic
AAGAATGGACGATATTGAGG+GGG	0.691386	8:+1664249	MsG0880041954.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACATTCCAAGATTGAC+AGG	-	Chr8:1668047-1668066	None:intergenic	30.0%
AAACTCAGGAGATAATGAAA+AGG	-	Chr8:1664118-1664137	None:intergenic	30.0%
AAAGTAAATTACCTGAAGCT+TGG	-	Chr8:1667266-1667285	None:intergenic	30.0%
AAATTCAAATGAAAGGGACA+GGG	-	Chr8:1666452-1666471	None:intergenic	30.0%
AAGGAAGCTTTACAAAAACT+TGG	+	Chr8:1669920-1669939	MsG0880041954.01.T01:CDS	30.0%
AAGTAAATTACCTGAAGCTT+GGG	-	Chr8:1667265-1667284	None:intergenic	30.0%
AAGTAAGCATGAAATAAGTC+AGG	-	Chr8:1668197-1668216	None:intergenic	30.0%
AATCTTTACTCGAAGTAATG+AGG	+	Chr8:1663747-1663766	MsG0880041954.01.T01:CDS	30.0%
AATGAACATATGCATTCAAG+AGG	-	Chr8:1663706-1663725	None:intergenic	30.0%
AGTCATAGAAAACATACACA+AGG	-	Chr8:1665176-1665195	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	1663341	1670370	1663341	ID=MsG0880041954.01;Name=MsG0880041954.01
Chr8	mRNA	1663341	1670370	1663341	ID=MsG0880041954.01.T01;Parent=MsG0880041954.01;Name=MsG0880041954.01.T01;_AED=0.35;_eAED=0.38;_QI=0\|0.44\|0.4\|1\|1\|1\|10\|226\|792
Chr8	exon	1663341	1663445	1663341	ID=MsG0880041954.01.T01:exon:1078;Parent=MsG0880041954.01.T01
Chr8	exon	1663542	1664471	1663542	ID=MsG0880041954.01.T01:exon:1079;Parent=MsG0880041954.01.T01
Chr8	exon	1664540	1664765	1664540	ID=MsG0880041954.01.T01:exon:1080;Parent=MsG0880041954.01.T01
Chr8	exon	1666768	1667273	1666768	ID=MsG0880041954.01.T01:exon:1081;Parent=MsG0880041954.01.T01
Chr8	exon	1667498	1667578	1667498	ID=MsG0880041954.01.T01:exon:1082;Parent=MsG0880041954.01.T01
Chr8	exon	1668416	1668497	1668416	ID=MsG0880041954.01.T01:exon:1083;Parent=MsG0880041954.01.T01
Chr8	exon	1668812	1668888	1668812	ID=MsG0880041954.01.T01:exon:1084;Parent=MsG0880041954.01.T01
Chr8	exon	1669146	1669310	1669146	ID=MsG0880041954.01.T01:exon:1085;Parent=MsG0880041954.01.T01
Chr8	exon	1669854	1669967	1669854	ID=MsG0880041954.01.T01:exon:1086;Parent=MsG0880041954.01.T01
Chr8	exon	1670052	1670370	1670052	ID=MsG0880041954.01.T01:exon:1087;Parent=MsG0880041954.01.T01
Chr8	CDS	1663341	1663445	1663341	ID=MsG0880041954.01.T01:cds;Parent=MsG0880041954.01.T01
Chr8	CDS	1663542	1664471	1663542	ID=MsG0880041954.01.T01:cds;Parent=MsG0880041954.01.T01
Chr8	CDS	1664540	1664765	1664540	ID=MsG0880041954.01.T01:cds;Parent=MsG0880041954.01.T01
Chr8	CDS	1666768	1667273	1666768	ID=MsG0880041954.01.T01:cds;Parent=MsG0880041954.01.T01
Chr8	CDS	1667498	1667578	1667498	ID=MsG0880041954.01.T01:cds;Parent=MsG0880041954.01.T01
Chr8	CDS	1668416	1668497	1668416	ID=MsG0880041954.01.T01:cds;Parent=MsG0880041954.01.T01
Chr8	CDS	1668812	1668888	1668812	ID=MsG0880041954.01.T01:cds;Parent=MsG0880041954.01.T01
Chr8	CDS	1669146	1669310	1669146	ID=MsG0880041954.01.T01:cds;Parent=MsG0880041954.01.T01
Chr8	CDS	1669854	1669967	1669854	ID=MsG0880041954.01.T01:cds;Parent=MsG0880041954.01.T01
Chr8	CDS	1670052	1670144	1670052	ID=MsG0880041954.01.T01:cds;Parent=MsG0880041954.01.T01
Chr8	three_prime_UTR	1670145	1670370	1670145	ID=MsG0880041954.01.T01:three_prime_utr;Parent=MsG0880041954.01.T01

Gene Sequence

>MsG0880041954.01.T01

ATGTCAGTAAAGTTTAAGTTTAATAATCTAGAAGTCCATTTCCCCTATGATTCTATTAAACGGAATGCTTCCTTTGGAATGTATGAAAGTATGGCATCGCTCACTGTATATGATTGGATGAACAATAGACCAGAGAGGTTTAGAATATCTGCAAGTGATGTTGCGATTCAGTTAGATCTAATCGCAAGAGTTCACGGAGTTTCTAGTGCAGAAGGTTTTTTTCTGAACCTAACCAATGATTTAAAAGACAAGAGAACATACGGTGCCCTCTTGAATGCATATGTTCATTCTAGGTCAAGAGAAAAGGCAGAATCTTTACTCGAAGTAATGAGGAGTAAAAGGTACTTAATACATTCACTACCTTTTAATTTAATGATGACTCTGTACATGAACCTTAAGGATTATGATAAAGTCGATATGTTGGTTTCAGAAATGAAAGAAAAGAACATACAGCTAGATATATATACATATAATATCTGGTTGTCCTCTTGTGGATCTCAAGGATCAATAGAGAAGATGGAACAAGTTTTTGAACAGATGTCGAAGGATCCTACCATTATTCCTAATTGGAGTACATTTAGTACAATGGCTGCAATGTATATTAAGATGGAACTGTTTGAAAAAGCACAAGAGTGCTTAAAAAAGGCCGAGGGTAGAATATTAGGTCGAGATAAAGTACCTTTTCATTATCTCCTGAGTTTGTATGGAAGTGTTGGAAACAAGGACGAAGTTTACCGCGTGTGGAATAACTATAAATCAATGTTTCCAAGTATACCTAACTTGGGATACCATGCTGTTATTTCTTCTCTCGTAAGAATGGACGATATTGAGGGGGCAGAAAAGCTTTACGAGGAATGGGTTTCTGTAAGGCCGTCTGATGATTCTAGAATAGGAAACCTTCTCATAAGCTGGTATCTTAAGAAAGGTAAATCAGATAAAGTTTTTAGCTTCTTTAAGCATATGAGTGAAGGTGGTGGATGTCCAAATTCGACTACATGGGAGCTTCTTTCTGAGGGTCATATTGCTGAAAATAGGCCAATAAAATTGGCTGCATTCCTTAAGCTTTGTCAAGACGAAGACGACATGGAGAGCGCCGAGGTTTTAATTGAGTTGTTGAAGAAGTCGGGATACCATAACGACGAAGCGTATGCGGCACTCATTAGCAAAGATGAACTGTCAAACAGGATTGAAAGAATTGATGATGTTGACAGTGAAAACATTGATGATGATGACTCTCAAGTGTTGTTCAGCCAAGTAGATACATCTGGTGGTAGAATGGGAGGAAGAGCATTCTCTAAGTCTTCGTCTTCAACATCCACGAGTTATTCGAGTCCATCATCGTCGTCTTCGTCTTCATCGTCCGGGAGTTATTCGAGTCCATCGTCGTCTTCGTCTTCGTCGTCCTGGAGTTATTCGGCTCCATCGCGGCGGAGTCGATCGCCGAGTCCAGACTTTTCTTACTCTCGTTCCTATTGGGATAAGCCTTCATCGTCCAAGAGTTATTGGGATGAGCCTTCTCCGTCTCCGTCTAGGGTTGAGCCTCCATCGCAACCGAGTCCAGAGTTTTCTTACTCTTCTTCTGAGTCTTCTCCGTCTAGGGTTGAGCCTGCCGTTGTTGATTCTAAATTTGATGTTGTTTTATTTCTCATCTGTGTGGGTTTCTTAGCTTTATTTTTGGCTTCTGCTTTTCTTTCTGATCGTCATGAGGAGGAACGTAGTGTTCCTACTGCTGCTGCTGCTGGAAAAACCACCGTACCCAAGCTTCAGCAAAATCAAGCCATTTCTGATCCTGATGAGGGACGTAGTGTTCCTACTGCTGCTGGAATAACCACCATACTCAAGCTTCAGGTTGGTTTGTTGGGGACGGGTCGCTCACTTCAAAGGGATCTCAATAGGATTGCAGAAGTTGCAGATACATCATCTCCAGAAGAGACCTCATTAGCTTTGATTCGGCATCCGGATTACTGTATCTCTGGGTACTCTTCTGTAAGTGACCTCATTATTGTTGTGGACATAAAGCAGGGTATAGAAGAAGGGGAGGAACGTTTTAACCAACTTTCAATTGAAGAGCGAGGAAAATTTGATGAAGAGACGCTGGTCAATGTTGACAACATAAAGAGGCAAAGCACGAGAAGCCAGAGATCTGATGGGTGCAGCAATGAATACATCGTGATAACAATCTTGGCCGCTGCTGAAGGAGAACATAAACTTCCTAGCATCAATGGAAGTGGAAACTTGAAGGAAGCTTTACAAAAACTTGGATCCATTCCTTCGAGCAAATTATTAGCAGTTGAGGTGTTATGGACCCCACAAAATGAAAATGATACTCTCTTGGAACAGGAGTTACTTGAAGATTACCCACTTTTGCAGCCTTTTTAA

Protein sequence

>MsG0880041954.01.T01

MSVKFKFNNLEVHFPYDSIKRNASFGMYESMASLTVYDWMNNRPERFRISASDVAIQLDLIARVHGVSSAEGFFLNLTNDLKDKRTYGALLNAYVHSRSREKAESLLEVMRSKRYLIHSLPFNLMMTLYMNLKDYDKVDMLVSEMKEKNIQLDIYTYNIWLSSCGSQGSIEKMEQVFEQMSKDPTIIPNWSTFSTMAAMYIKMELFEKAQECLKKAEGRILGRDKVPFHYLLSLYGSVGNKDEVYRVWNNYKSMFPSIPNLGYHAVISSLVRMDDIEGAEKLYEEWVSVRPSDDSRIGNLLISWYLKKGKSDKVFSFFKHMSEGGGCPNSTTWELLSEGHIAENRPIKLAAFLKLCQDEDDMESAEVLIELLKKSGYHNDEAYAALISKDELSNRIERIDDVDSENIDDDDSQVLFSQVDTSGGRMGGRAFSKSSSSTSTSYSSPSSSSSSSSSGSYSSPSSSSSSSSWSYSAPSRRSRSPSPDFSYSRSYWDKPSSSKSYWDEPSPSPSRVEPPSQPSPEFSYSSSESSPSRVEPAVVDSKFDVVLFLICVGFLALFLASAFLSDRHEEERSVPTAAAAGKTTVPKLQQNQAISDPDEGRSVPTAAGITTILKLQVGLLGTGRSLQRDLNRIAEVADTSSPEETSLALIRHPDYCISGYSSVSDLIIVVDIKQGIEEGEERFNQLSIEERGKFDEETLVNVDNIKRQSTRSQRSDGCSNEYIVITILAAAEGEHKLPSINGSGNLKEALQKLGSIPSSKLLAVEVLWTPQNENDTLLEQELLEDYPLLQPF*