Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045915.01.T01 | XP_013457455.1 | 98.05 | 359 | 7 | 0 | 1 | 359 | 1 | 359 | 0 | 726 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045915.01.T01 | Q9FGQ7 | 51.389 | 360 | 149 | 8 | 11 | 359 | 23 | 367 | 8.62E-113 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045915.01.T01 | A0A072UQ65 | 98.050 | 359 | 7 | 0 | 1 | 359 | 1 | 359 | 0.0 | 726 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000115.01 | MsG0880045915.01 | 0.800471 | 1.419379e-48 | 6.614251e-46 |
| MsG0180000275.01 | MsG0880045915.01 | 0.805537 | 1.272354e-49 | 6.748468e-47 |
| MsG0180001828.01 | MsG0880045915.01 | 0.823464 | 1.365959e-53 | 1.176953e-50 |
| MsG0180002486.01 | MsG0880045915.01 | 0.805100 | 1.570987e-49 | 8.239527e-47 |
| MsG0880045294.01 | MsG0880045915.01 | 0.803356 | 3.625107e-49 | 1.817783e-46 |
| MsG0880045483.01 | MsG0880045915.01 | 0.832630 | 8.473928e-56 | 9.525589e-53 |
| MsG0180004674.01 | MsG0880045915.01 | 0.809948 | 1.470100e-50 | 8.748599e-48 |
| MsG0780040472.01 | MsG0880045915.01 | 0.800280 | 1.551765e-48 | 7.196676e-46 |
| MsG0780040765.01 | MsG0880045915.01 | 0.807452 | 5.020828e-50 | 2.797605e-47 |
| MsG0780041735.01 | MsG0880045915.01 | 0.808274 | 3.356170e-50 | 1.910867e-47 |
| MsG0880042544.01 | MsG0880045915.01 | 0.839274 | 1.747308e-57 | 2.400796e-54 |
| MsG0880043077.01 | MsG0880045915.01 | 0.811531 | 6.683652e-51 | 4.147439e-48 |
| MsG0280010977.01 | MsG0880045915.01 | 0.805216 | 1.485661e-49 | 7.815143e-47 |
| MsG0280011416.01 | MsG0880045915.01 | 0.816022 | 6.849452e-52 | 4.798689e-49 |
| MsG0380014792.01 | MsG0880045915.01 | 0.800056 | 1.723554e-48 | 7.947891e-46 |
| MsG0480020699.01 | MsG0880045915.01 | 0.811589 | 6.491432e-51 | 4.034113e-48 |
| MsG0480020847.01 | MsG0880045915.01 | 0.837446 | 5.173125e-57 | 6.721697e-54 |
| MsG0480021719.01 | MsG0880045915.01 | 0.837446 | 5.174384e-57 | 6.723167e-54 |
| MsG0480022045.01 | MsG0880045915.01 | 0.804164 | 2.463058e-49 | 1.261057e-46 |
| MsG0480022932.01 | MsG0880045915.01 | 0.803079 | 4.137096e-49 | 2.059787e-46 |
| MsG0480023146.01 | MsG0880045915.01 | 0.846635 | 1.919424e-59 | 3.324850e-56 |
| MsG0580024317.01 | MsG0880045915.01 | 0.823838 | 1.116175e-53 | 9.720448e-51 |
| MsG0580025645.01 | MsG0880045915.01 | 0.854645 | 1.071975e-61 | 2.410593e-58 |
| MsG0380015549.01 | MsG0880045915.01 | 0.825546 | 4.418397e-54 | 4.039586e-51 |
| MsG0380016247.01 | MsG0880045915.01 | 0.807221 | 5.618741e-50 | 3.111997e-47 |
| MsG0380017159.01 | MsG0880045915.01 | 0.801881 | 7.303521e-49 | 3.527403e-46 |
| MsG0380017559.01 | MsG0880045915.01 | 0.810287 | 1.242626e-50 | 7.460213e-48 |
| MsG0280007708.01 | MsG0880045915.01 | 0.808501 | 3.002914e-50 | 1.719849e-47 |
| MsG0280009783.01 | MsG0880045915.01 | 0.804391 | 2.209201e-49 | 1.137680e-46 |
| MsG0280009794.01 | MsG0880045915.01 | 0.807406 | 5.135257e-50 | 2.857922e-47 |
| MsG0780035954.01 | MsG0880045915.01 | 0.817148 | 3.831703e-52 | 2.768381e-49 |
| MsG0780038332.01 | MsG0880045915.01 | 0.802871 | 4.566951e-49 | 2.261950e-46 |
| MsG0780038987.01 | MsG0880045915.01 | 0.810834 | 9.466462e-51 | 5.767020e-48 |
| MsG0780040076.01 | MsG0880045915.01 | 0.818495 | 1.902689e-52 | 1.426492e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045915.01.T01 | MTR_4g094942 | 98.050 | 359 | 7 | 0 | 1 | 359 | 1 | 359 | 0.0 | 726 |
| MsG0880045915.01.T01 | MTR_1g107535 | 54.286 | 315 | 134 | 5 | 47 | 355 | 68 | 378 | 3.36e-114 | 337 |
| MsG0880045915.01.T01 | MTR_3g102310 | 56.436 | 303 | 124 | 6 | 42 | 340 | 46 | 344 | 2.88e-109 | 323 |
| MsG0880045915.01.T01 | MTR_4g080990 | 36.667 | 240 | 140 | 6 | 81 | 315 | 91 | 323 | 1.43e-46 | 162 |
| MsG0880045915.01.T01 | MTR_3g100710 | 36.842 | 266 | 151 | 5 | 8 | 258 | 10 | 273 | 2.98e-46 | 161 |
| MsG0880045915.01.T01 | MTR_5g032550 | 32.476 | 311 | 187 | 10 | 8 | 308 | 11 | 308 | 2.89e-43 | 153 |
| MsG0880045915.01.T01 | MTR_5g032550 | 35.510 | 245 | 142 | 8 | 8 | 241 | 11 | 250 | 5.25e-41 | 145 |
| MsG0880045915.01.T01 | MTR_5g035360 | 38.075 | 239 | 131 | 6 | 52 | 280 | 43 | 274 | 4.52e-40 | 144 |
| MsG0880045915.01.T01 | MTR_8g063120 | 38.049 | 205 | 114 | 3 | 81 | 279 | 93 | 290 | 5.94e-35 | 131 |
| MsG0880045915.01.T01 | MTR_8g063120 | 39.583 | 192 | 106 | 3 | 79 | 264 | 91 | 278 | 1.15e-33 | 126 |
| MsG0880045915.01.T01 | MTR_5g065830 | 30.201 | 298 | 192 | 8 | 53 | 341 | 55 | 345 | 9.95e-33 | 125 |
| MsG0880045915.01.T01 | MTR_3g100710 | 44.604 | 139 | 77 | 0 | 120 | 258 | 106 | 244 | 4.75e-31 | 120 |
| MsG0880045915.01.T01 | MTR_8g068950 | 32.646 | 291 | 153 | 12 | 52 | 312 | 61 | 338 | 2.80e-30 | 119 |
| MsG0880045915.01.T01 | MTR_5g015670 | 35.802 | 162 | 99 | 3 | 78 | 239 | 99 | 255 | 1.70e-28 | 114 |
| MsG0880045915.01.T01 | MTR_2g089490 | 28.352 | 261 | 171 | 7 | 82 | 336 | 51 | 301 | 1.37e-27 | 110 |
| MsG0880045915.01.T01 | MTR_2g089490 | 29.389 | 262 | 164 | 9 | 82 | 336 | 51 | 298 | 8.22e-27 | 108 |
| MsG0880045915.01.T01 | MTR_3g103080 | 39.098 | 133 | 80 | 1 | 69 | 201 | 54 | 185 | 1.48e-26 | 108 |
| MsG0880045915.01.T01 | MTR_2g011500 | 30.851 | 188 | 114 | 4 | 78 | 256 | 80 | 260 | 5.45e-25 | 103 |
| MsG0880045915.01.T01 | MTR_4g095790 | 32.227 | 211 | 120 | 8 | 78 | 275 | 64 | 264 | 1.62e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045915.01.T01 | AT5G67260 | 51.389 | 360 | 149 | 8 | 11 | 359 | 23 | 367 | 8.79e-114 | 335 |
| MsG0880045915.01.T01 | AT5G67260 | 51.143 | 350 | 145 | 8 | 11 | 349 | 23 | 357 | 1.92e-108 | 323 |
| MsG0880045915.01.T01 | AT3G50070 | 48.747 | 359 | 161 | 7 | 8 | 359 | 19 | 361 | 3.10e-101 | 303 |
| MsG0880045915.01.T01 | AT4G34160 | 50.505 | 297 | 133 | 5 | 3 | 294 | 11 | 298 | 6.41e-94 | 285 |
| MsG0880045915.01.T01 | AT2G22490 | 37.918 | 269 | 146 | 10 | 52 | 308 | 64 | 323 | 1.96e-44 | 157 |
| MsG0880045915.01.T01 | AT2G22490 | 36.131 | 274 | 145 | 10 | 52 | 308 | 64 | 324 | 6.25e-43 | 153 |
| MsG0880045915.01.T01 | AT5G65420 | 37.247 | 247 | 134 | 7 | 8 | 246 | 9 | 242 | 3.34e-42 | 148 |
| MsG0880045915.01.T01 | AT5G65420 | 37.247 | 247 | 134 | 7 | 8 | 246 | 9 | 242 | 1.15e-41 | 148 |
| MsG0880045915.01.T01 | AT5G65420 | 40.513 | 195 | 101 | 5 | 8 | 197 | 9 | 193 | 2.47e-41 | 145 |
| MsG0880045915.01.T01 | AT1G70210 | 34.507 | 284 | 149 | 9 | 9 | 280 | 23 | 281 | 1.55e-39 | 143 |
| MsG0880045915.01.T01 | AT5G65420 | 35.798 | 257 | 134 | 8 | 8 | 246 | 9 | 252 | 6.77e-39 | 141 |
| MsG0880045915.01.T01 | AT5G10440 | 36.702 | 188 | 114 | 3 | 51 | 233 | 34 | 221 | 3.16e-35 | 129 |
| MsG0880045915.01.T01 | AT5G10440 | 37.624 | 202 | 114 | 5 | 51 | 244 | 34 | 231 | 3.79e-35 | 130 |
| MsG0880045915.01.T01 | AT4G37630 | 32.738 | 168 | 92 | 4 | 51 | 198 | 23 | 189 | 1.41e-21 | 93.2 |
| MsG0880045915.01.T01 | AT4G37630 | 32.530 | 166 | 93 | 3 | 51 | 198 | 23 | 187 | 1.50e-21 | 93.2 |
| MsG0880045915.01.T01 | AT4G37630 | 32.738 | 168 | 92 | 4 | 51 | 198 | 23 | 189 | 2.50e-21 | 93.6 |
| MsG0880045915.01.T01 | AT4G03270 | 29.885 | 174 | 116 | 4 | 103 | 273 | 78 | 248 | 4.41e-18 | 84.0 |
| MsG0880045915.01.T01 | AT5G02110 | 32.738 | 168 | 110 | 2 | 71 | 238 | 67 | 231 | 3.33e-17 | 82.0 |
| MsG0880045915.01.T01 | AT4G03270 | 29.885 | 174 | 115 | 5 | 103 | 273 | 78 | 247 | 1.89e-16 | 79.3 |
| MsG0880045915.01.T01 | AT5G02110 | 35.965 | 114 | 70 | 2 | 125 | 238 | 92 | 202 | 2.00e-11 | 64.7 |
Find 90 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCCACTTTGTTGTTTA+AGG | 0.045934 | 8:+66388564 | MsG0880045915.01.T01:three_prime_UTR |
| CAGATACGCGCTTACGTTTC+TGG | 0.117684 | 8:-66388166 | None:intergenic |
| ATGTACTCAGTTGCATTAAA+TGG | 0.206291 | 8:-66387904 | None:intergenic |
| AACCCATGTGCCACTTCTTT+TGG | 0.207318 | 8:+66387322 | MsG0880045915.01.T01:CDS |
| TCTAGAGTTTGTGCTCATTA+TGG | 0.211445 | 8:+66387161 | MsG0880045915.01.T01:CDS |
| CTAGAGTTTGTGCTCATTAT+GGG | 0.225299 | 8:+66387162 | MsG0880045915.01.T01:CDS |
| TAACTAGAACATAATGTAAT+TGG | 0.246056 | 8:-66388480 | None:intergenic |
| TGTTCAACAATGATATGTTT+TGG | 0.249151 | 8:+66387021 | MsG0880045915.01.T01:CDS |
| TCCATTCATCTTCAAATGTT+TGG | 0.288440 | 8:-66388519 | None:intergenic |
| AGCTCTCTTTCACATAATTC+TGG | 0.291480 | 8:+66388430 | MsG0880045915.01.T01:three_prime_UTR |
| TGAGGTTGAGACATCTTCTA+TGG | 0.337053 | 8:-66386885 | None:intergenic |
| TATACAAAGAATGGAGCTTT+TGG | 0.337064 | 8:+66387525 | MsG0880045915.01.T01:CDS |
| CAAAATCATCATTAATCAAA+TGG | 0.341802 | 8:-66387088 | None:intergenic |
| GTTGGTAATGGTTTCGGAAT+CGG | 0.369861 | 8:-66386961 | None:intergenic |
| ATGTGTTCAAAGAATGAAAT+TGG | 0.377203 | 8:-66387586 | None:intergenic |
| CACTGTTGTTGTCAGATTCA+AGG | 0.379599 | 8:+66387812 | MsG0880045915.01.T01:intron |
| ATTGTGAGAAAGGGAGAGAA+AGG | 0.388786 | 8:-66386836 | None:intergenic |
| TGAGTACATTGAACAACTCT+TGG | 0.400069 | 8:+66387918 | MsG0880045915.01.T01:CDS |
| GCGATAGCTCAAATGATTCA+TGG | 0.403105 | 8:+66388231 | MsG0880045915.01.T01:CDS |
| GTTCTTCTTCATGTCATTGT+TGG | 0.405061 | 8:+66387670 | MsG0880045915.01.T01:CDS |
| TTTGTTGTTTAAGGTGGTGC+AGG | 0.405236 | 8:+66388573 | MsG0880045915.01.T01:three_prime_UTR |
| AAGTTATTAGTTTGCGATGA+TGG | 0.406328 | 8:+66388128 | MsG0880045915.01.T01:CDS |
| TGGTGTTATCTACATTGAAA+TGG | 0.411519 | 8:+66387545 | MsG0880045915.01.T01:CDS |
| TTCTGGTGGCTGTTATGTTA+TGG | 0.413700 | 8:+66388447 | MsG0880045915.01.T01:three_prime_UTR |
| CGTATCTGAACCAGGTAGTC+CGG | 0.423092 | 8:+66388181 | MsG0880045915.01.T01:CDS |
| TTTGAAGAGCCGTTTGCATT+GGG | 0.428112 | 8:+66387624 | MsG0880045915.01.T01:CDS |
| GTTCAATCTCTTTAATTACA+TGG | 0.432813 | 8:-66387882 | None:intergenic |
| GCCAAACATTTGAAGATGAA+TGG | 0.435014 | 8:+66388518 | MsG0880045915.01.T01:three_prime_UTR |
| GTTTGAAGAGCCGTTTGCAT+TGG | 0.436083 | 8:+66387623 | MsG0880045915.01.T01:CDS |
| CACTAGTTTGAAGTTTCAAA+AGG | 0.440021 | 8:+66387235 | MsG0880045915.01.T01:CDS |
| TAGTAAAGGTAGAAAAGAAA+AGG | 0.443131 | 8:+66386665 | MsG0880045915.01.T01:five_prime_UTR |
| GTAGCAGCAGCCAATGTAGA+AGG | 0.443163 | 8:-66387853 | None:intergenic |
| GATTGAAGCTTTGTAGCAGA+TGG | 0.445655 | 8:-66386987 | None:intergenic |
| AAAATCATCATTAATCAAAT+GGG | 0.446028 | 8:-66387087 | None:intergenic |
| AGCAGATGGGTCGTTGGTAA+TGG | 0.447779 | 8:-66386973 | None:intergenic |
| CCAGCAGATGCGATTGCCTT+CGG | 0.448229 | 8:+66388316 | MsG0880045915.01.T01:CDS |
| CAGAGAAAGGAAGGAGATTG+AGG | 0.449243 | 8:-66386903 | None:intergenic |
| GAGTTATCTTCCTTCTACAT+TGG | 0.453122 | 8:+66387843 | MsG0880045915.01.T01:CDS |
| GGTTGTTTCATTGTGAGAAA+GGG | 0.453754 | 8:-66386845 | None:intergenic |
| TTGAATGAGTCTCGTGTTGA+AGG | 0.454018 | 8:+66387125 | MsG0880045915.01.T01:CDS |
| CTCGTGTTGAAGGTGTGAAT+TGG | 0.455681 | 8:+66387135 | MsG0880045915.01.T01:CDS |
| AGGTTGTTTCATTGTGAGAA+AGG | 0.455860 | 8:-66386846 | None:intergenic |
| AGCTAAAACTATACAAAGAA+TGG | 0.456932 | 8:+66387516 | MsG0880045915.01.T01:CDS |
| TGGGTCGTTGGTAATGGTTT+CGG | 0.460828 | 8:-66386967 | None:intergenic |
| GTTTGCATTGGGAGTTTATG+TGG | 0.461092 | 8:+66387635 | MsG0880045915.01.T01:CDS |
| GAGTACATTGAACAACTCTT+GGG | 0.474105 | 8:+66387919 | MsG0880045915.01.T01:CDS |
| AAGAATGAAATTGGTGTCAC+TGG | 0.474814 | 8:-66387577 | None:intergenic |
| ATGGAGAAGATGAAGAGAAA+AGG | 0.478077 | 8:-66386866 | None:intergenic |
| GTGAGATTGAAGATGATGAA+TGG | 0.479973 | 8:-66386725 | None:intergenic |
| ACTGTTGTTGTCAGATTCAA+GGG | 0.488226 | 8:+66387813 | MsG0880045915.01.T01:intron |
| ATCCACTTTGTTGTTTAAGG+TGG | 0.489760 | 8:+66388567 | MsG0880045915.01.T01:three_prime_UTR |
| ACATAAACTCCCAATGCAAA+CGG | 0.499623 | 8:-66387633 | None:intergenic |
| AGTTTCAAAAGGATAAGCCT+TGG | 0.509680 | 8:+66387246 | MsG0880045915.01.T01:CDS |
| CCGAAGGCAATCGCATCTGC+TGG | 0.515805 | 8:-66388316 | None:intergenic |
| TGTTCTTCACAGAGAAAGGA+AGG | 0.526108 | 8:-66386912 | None:intergenic |
| GTTTATGTGGCGTTGTGAGA+AGG | 0.526725 | 8:+66387648 | MsG0880045915.01.T01:CDS |
| ATGACACCACCCGGACTACC+TGG | 0.527412 | 8:-66388191 | None:intergenic |
| TTGTTGTTTAAGGTGGTGCA+GGG | 0.533062 | 8:+66388574 | MsG0880045915.01.T01:three_prime_UTR |
| GAACACATTGTTAGAAGACT+TGG | 0.535174 | 8:+66387601 | MsG0880045915.01.T01:CDS |
| CACTGCAGCCGATGTTCAAG+AGG | 0.536747 | 8:+66388279 | MsG0880045915.01.T01:CDS |
| TTAAACAACAAAGTGGATGA+AGG | 0.543730 | 8:-66388562 | None:intergenic |
| GAGTGAGTAATGAAAACAAA+GGG | 0.548729 | 8:-66386703 | None:intergenic |
| TGTTGCTTGTTTGTCTCTTG+CGG | 0.549218 | 8:+66387286 | MsG0880045915.01.T01:CDS |
| TCTCTTTCACATAATTCTGG+TGG | 0.561716 | 8:+66388433 | MsG0880045915.01.T01:three_prime_UTR |
| CTTTGTAGCAGATGGGTCGT+TGG | 0.562433 | 8:-66386979 | None:intergenic |
| TTCATGGACTGCAGCATCGT+CGG | 0.565891 | 8:+66388247 | MsG0880045915.01.T01:CDS |
| AATGGTTTCGGAATCGGTGA+GGG | 0.567222 | 8:-66386955 | None:intergenic |
| CGTAAGCGCGTATCTGAACC+AGG | 0.577606 | 8:+66388173 | MsG0880045915.01.T01:CDS |
| GTATCTGAACCAGGTAGTCC+GGG | 0.579695 | 8:+66388182 | MsG0880045915.01.T01:CDS |
| ATTGAAGCTTTGTAGCAGAT+GGG | 0.581201 | 8:-66386986 | None:intergenic |
| GCTCTGCTCCTCTTGAACAT+CGG | 0.583132 | 8:-66388287 | None:intergenic |
| ACTTGAAAATCCAAAAGAAG+TGG | 0.586683 | 8:-66387332 | None:intergenic |
| AATCCAAAAGAAGTGGCACA+TGG | 0.596075 | 8:-66387325 | None:intergenic |
| ATTTGAAGATGAATGGAATG+AGG | 0.596504 | 8:+66388525 | MsG0880045915.01.T01:three_prime_UTR |
| CACCACCTTAAACAACAAAG+TGG | 0.597864 | 8:-66388569 | None:intergenic |
| GGTGAGGGATTCATCTTCGA+AGG | 0.608754 | 8:-66386940 | None:intergenic |
| GGAGTGAGTAATGAAAACAA+AGG | 0.621907 | 8:-66386704 | None:intergenic |
| ATCCAAAAGAAGTGGCACAT+GGG | 0.625549 | 8:-66387324 | None:intergenic |
| AGATGAATGGAATGAGGCAG+AGG | 0.625896 | 8:+66388531 | MsG0880045915.01.T01:three_prime_UTR |
| GGGTTTACTAAAGATTAGTG+AGG | 0.633483 | 8:+66387939 | MsG0880045915.01.T01:CDS |
| TAATGGTTTCGGAATCGGTG+AGG | 0.636416 | 8:-66386956 | None:intergenic |
| GCAGCTGATAGATAACTCAC+AGG | 0.637755 | 8:-66388641 | None:intergenic |
| GCAGTAAGCTGAGTCATCCA+AGG | 0.637891 | 8:-66387263 | None:intergenic |
| ATCATCATCATTAATTAACG+AGG | 0.639316 | 8:-66388371 | None:intergenic |
| TCATCATCATTAATTAACGA+GGG | 0.645108 | 8:-66388370 | None:intergenic |
| TGTTATCTACATTGAAATGG+AGG | 0.653096 | 8:+66387548 | MsG0880045915.01.T01:CDS |
| GATGCATCAATGACACCACC+CGG | 0.655887 | 8:-66388200 | None:intergenic |
| ATAGACACACGATTAACCGA+AGG | 0.692739 | 8:-66388332 | None:intergenic |
| TCTGAACCAGGTAGTCCGGG+TGG | 0.704205 | 8:+66388185 | MsG0880045915.01.T01:CDS |
| GTAGTTAACAGCAAGAACAG+TGG | 0.713343 | 8:-66387198 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATGTTTTTTTGTT+AGG | + | Chr8:66387468-66387487 | MsG0880045915.01.T01:intron | 10.0% |
| !! | AAAATCATCATTAATCAAAT+GGG | - | Chr8:66387090-66387109 | None:intergenic | 15.0% |
| !! | CAAAATCATCATTAATCAAA+TGG | - | Chr8:66387091-66387110 | None:intergenic | 20.0% |
| !! | CATCAAAAAACAAAACTTTA+TGG | - | Chr8:66387393-66387412 | None:intergenic | 20.0% |
| !! | TAACTAGAACATAATGTAAT+TGG | - | Chr8:66388483-66388502 | None:intergenic | 20.0% |
| !! | TAATAAATATGATACTGTAC+TGG | + | Chr8:66387723-66387742 | MsG0880045915.01.T01:intron | 20.0% |
| !!! | AATGATGATTTTGTTATTGA+TGG | + | Chr8:66387098-66387117 | MsG0880045915.01.T01:CDS | 20.0% |
| !!! | AGTTTTTGTTTTTTTTTAGG+AGG | - | Chr8:66386752-66386771 | None:intergenic | 20.0% |
| !!! | TAGTATTTTTACTTCAAATG+TGG | + | Chr8:66388406-66388425 | MsG0880045915.01.T01:three_prime_UTR | 20.0% |
| !!! | TGGAGTTTTTGTTTTTTTTT+AGG | - | Chr8:66386755-66386774 | None:intergenic | 20.0% |
| ! | AACAATTATTGACAATGTAG+AGG | - | Chr8:66387992-66388011 | None:intergenic | 25.0% |
| ! | AGCTAAAACTATACAAAGAA+TGG | + | Chr8:66387516-66387535 | MsG0880045915.01.T01:CDS | 25.0% |
| ! | ATAAGTGAAATGACTAAGTT+TGG | + | Chr8:66388045-66388064 | MsG0880045915.01.T01:intron | 25.0% |
| ! | ATCATCATCATTAATTAACG+AGG | - | Chr8:66388374-66388393 | None:intergenic | 25.0% |
| ! | ATGTGTTCAAAGAATGAAAT+TGG | - | Chr8:66387589-66387608 | None:intergenic | 25.0% |
| ! | GTTCAATCTCTTTAATTACA+TGG | - | Chr8:66387885-66387904 | None:intergenic | 25.0% |
| ! | TAGTAAAGGTAGAAAAGAAA+AGG | + | Chr8:66386665-66386684 | MsG0880045915.01.T01:five_prime_UTR | 25.0% |
| ! | TCATCATCATTAATTAACGA+GGG | - | Chr8:66388373-66388392 | None:intergenic | 25.0% |
| !! | GTTCAACAATGATATGTTTT+GGG | + | Chr8:66387022-66387041 | MsG0880045915.01.T01:CDS | 25.0% |
| !! | TGTTCAACAATGATATGTTT+TGG | + | Chr8:66387021-66387040 | MsG0880045915.01.T01:CDS | 25.0% |
| !!! | ATAAGTACCATTAGTCTTAA+TGG | - | Chr8:66387779-66387798 | None:intergenic | 25.0% |
| !!! | TATGTTTTTTTGTTAGGTTG+AGG | + | Chr8:66387474-66387493 | MsG0880045915.01.T01:intron | 25.0% |
| ACTTGAAAATCCAAAAGAAG+TGG | - | Chr8:66387335-66387354 | None:intergenic | 30.0% | |
| ATGTACTCAGTTGCATTAAA+TGG | - | Chr8:66387907-66387926 | None:intergenic | 30.0% | |
| ATTTGAAGATGAATGGAATG+AGG | + | Chr8:66388525-66388544 | MsG0880045915.01.T01:three_prime_UTR | 30.0% | |
| GAGTGAGTAATGAAAACAAA+GGG | - | Chr8:66386706-66386725 | None:intergenic | 30.0% | |
| TCCATTCATCTTCAAATGTT+TGG | - | Chr8:66388522-66388541 | None:intergenic | 30.0% | |
| TGTTATCTACATTGAAATGG+AGG | + | Chr8:66387548-66387567 | MsG0880045915.01.T01:CDS | 30.0% | |
| TTAAACAACAAAGTGGATGA+AGG | - | Chr8:66388565-66388584 | None:intergenic | 30.0% | |
| ! | CACTAGTTTGAAGTTTCAAA+AGG | + | Chr8:66387235-66387254 | MsG0880045915.01.T01:CDS | 30.0% |
| ! | TATACAAAGAATGGAGCTTT+TGG | + | Chr8:66387525-66387544 | MsG0880045915.01.T01:CDS | 30.0% |
| ! | TGAATTTTCCAAATCTGATG+CGG | + | Chr8:66388011-66388030 | MsG0880045915.01.T01:intron | 30.0% |
| !! | AAGTTATTAGTTTGCGATGA+TGG | + | Chr8:66388128-66388147 | MsG0880045915.01.T01:CDS | 30.0% |
| !! | TGGTGATGATTTGATTTTAC+AGG | + | Chr8:66388073-66388092 | MsG0880045915.01.T01:intron | 30.0% |
| !! | TGGTGTTATCTACATTGAAA+TGG | + | Chr8:66387545-66387564 | MsG0880045915.01.T01:CDS | 30.0% |
| !! | TTCATCCACTTTGTTGTTTA+AGG | + | Chr8:66388564-66388583 | MsG0880045915.01.T01:three_prime_UTR | 30.0% |
| !!! | TGTTTGTTTTTTTCTCTCAC+TGG | - | Chr8:66386775-66386794 | None:intergenic | 30.0% |
| ACATAAACTCCCAATGCAAA+CGG | - | Chr8:66387636-66387655 | None:intergenic | 35.0% | |
| ACTGTTGTTGTCAGATTCAA+GGG | + | Chr8:66387813-66387832 | MsG0880045915.01.T01:intron | 35.0% | |
| AGACATGCCATTAAGACTAA+TGG | + | Chr8:66387769-66387788 | MsG0880045915.01.T01:intron | 35.0% | |
| AGCTCTCTTTCACATAATTC+TGG | + | Chr8:66388430-66388449 | MsG0880045915.01.T01:three_prime_UTR | 35.0% | |
| AGTTTCAAAAGGATAAGCCT+TGG | + | Chr8:66387246-66387265 | MsG0880045915.01.T01:CDS | 35.0% | |
| ATGGAGAAGATGAAGAGAAA+AGG | - | Chr8:66386869-66386888 | None:intergenic | 35.0% | |
| CTAGAGTTTGTGCTCATTAT+GGG | + | Chr8:66387162-66387181 | MsG0880045915.01.T01:CDS | 35.0% | |
| GAACACATTGTTAGAAGACT+TGG | + | Chr8:66387601-66387620 | MsG0880045915.01.T01:CDS | 35.0% | |
| GAGTACATTGAACAACTCTT+GGG | + | Chr8:66387919-66387938 | MsG0880045915.01.T01:CDS | 35.0% | |
| GAGTTATCTTCCTTCTACAT+TGG | + | Chr8:66387843-66387862 | MsG0880045915.01.T01:CDS | 35.0% | |
| GCCAAACATTTGAAGATGAA+TGG | + | Chr8:66388518-66388537 | MsG0880045915.01.T01:three_prime_UTR | 35.0% | |
| GGAGTGAGTAATGAAAACAA+AGG | - | Chr8:66386707-66386726 | None:intergenic | 35.0% | |
| GGGTTTACTAAAGATTAGTG+AGG | + | Chr8:66387939-66387958 | MsG0880045915.01.T01:CDS | 35.0% | |
| GTGAGATTGAAGATGATGAA+TGG | - | Chr8:66386728-66386747 | None:intergenic | 35.0% | |
| GTTCTTCTTCATGTCATTGT+TGG | + | Chr8:66387670-66387689 | MsG0880045915.01.T01:CDS | 35.0% | |
| TCTCTTTCACATAATTCTGG+TGG | + | Chr8:66388433-66388452 | MsG0880045915.01.T01:three_prime_UTR | 35.0% | |
| TGAGTACATTGAACAACTCT+TGG | + | Chr8:66387918-66387937 | MsG0880045915.01.T01:CDS | 35.0% | |
| ! | AGGTTGTTTCATTGTGAGAA+AGG | - | Chr8:66386849-66386868 | None:intergenic | 35.0% |
| ! | ATTGAAGCTTTGTAGCAGAT+GGG | - | Chr8:66386989-66387008 | None:intergenic | 35.0% |
| ! | GAATTTTCCAAATCTGATGC+GGG | + | Chr8:66388012-66388031 | MsG0880045915.01.T01:intron | 35.0% |
| ! | GGTTGTTTCATTGTGAGAAA+GGG | - | Chr8:66386848-66386867 | None:intergenic | 35.0% |
| ! | TCTAGAGTTTGTGCTCATTA+TGG | + | Chr8:66387161-66387180 | MsG0880045915.01.T01:CDS | 35.0% |
| !! | AAGAATGAAATTGGTGTCAC+TGG | - | Chr8:66387580-66387599 | None:intergenic | 35.0% |
| !! | AATGACTAAGTTTGGTGTCT+TGG | + | Chr8:66388053-66388072 | MsG0880045915.01.T01:intron | 35.0% |
| !! | ATCCACTTTGTTGTTTAAGG+TGG | + | Chr8:66388567-66388586 | MsG0880045915.01.T01:three_prime_UTR | 35.0% |
| !! | GTTTTGTTCTTCACAGAGAA+AGG | - | Chr8:66386919-66386938 | None:intergenic | 35.0% |
| AATCCAAAAGAAGTGGCACA+TGG | - | Chr8:66387328-66387347 | None:intergenic | 40.0% | |
| ATAGACACACGATTAACCGA+AGG | - | Chr8:66388335-66388354 | None:intergenic | 40.0% | |
| ATCCAAAAGAAGTGGCACAT+GGG | - | Chr8:66387327-66387346 | None:intergenic | 40.0% | |
| ATTGTGAGAAAGGGAGAGAA+AGG | - | Chr8:66386839-66386858 | None:intergenic | 40.0% | |
| CACCACCTTAAACAACAAAG+TGG | - | Chr8:66388572-66388591 | None:intergenic | 40.0% | |
| CACTGTTGTTGTCAGATTCA+AGG | + | Chr8:66387812-66387831 | MsG0880045915.01.T01:intron | 40.0% | |
| GCGATAGCTCAAATGATTCA+TGG | + | Chr8:66388231-66388250 | MsG0880045915.01.T01:CDS | 40.0% | |
| GTAGTTAACAGCAAGAACAG+TGG | - | Chr8:66387201-66387220 | None:intergenic | 40.0% | |
| GTTTGCATTGGGAGTTTATG+TGG | + | Chr8:66387635-66387654 | MsG0880045915.01.T01:CDS | 40.0% | |
| TGAGGTTGAGACATCTTCTA+TGG | - | Chr8:66386888-66386907 | None:intergenic | 40.0% | |
| TGTTCTTCACAGAGAAAGGA+AGG | - | Chr8:66386915-66386934 | None:intergenic | 40.0% | |
| TTCTGGTGGCTGTTATGTTA+TGG | + | Chr8:66388447-66388466 | MsG0880045915.01.T01:three_prime_UTR | 40.0% | |
| TTGAATGAGTCTCGTGTTGA+AGG | + | Chr8:66387125-66387144 | MsG0880045915.01.T01:CDS | 40.0% | |
| TTTGAAGAGCCGTTTGCATT+GGG | + | Chr8:66387624-66387643 | MsG0880045915.01.T01:CDS | 40.0% | |
| ! | GATTGAAGCTTTGTAGCAGA+TGG | - | Chr8:66386990-66387009 | None:intergenic | 40.0% |
| ! | TGTTGCTTGTTTGTCTCTTG+CGG | + | Chr8:66387286-66387305 | MsG0880045915.01.T01:CDS | 40.0% |
| !! | GTTGGTAATGGTTTCGGAAT+CGG | - | Chr8:66386964-66386983 | None:intergenic | 40.0% |
| !! | TTGTTGTTTAAGGTGGTGCA+GGG | + | Chr8:66388574-66388593 | MsG0880045915.01.T01:three_prime_UTR | 40.0% |
| !! | TTTGTTGTTTAAGGTGGTGC+AGG | + | Chr8:66388573-66388592 | MsG0880045915.01.T01:three_prime_UTR | 40.0% |
| AATGGTTTCGGAATCGGTGA+GGG | - | Chr8:66386958-66386977 | None:intergenic | 45.0% | |
| AGATGAATGGAATGAGGCAG+AGG | + | Chr8:66388531-66388550 | MsG0880045915.01.T01:three_prime_UTR | 45.0% | |
| CAAATCTGATGCGGGTTTGA+TGG | + | Chr8:66388020-66388039 | MsG0880045915.01.T01:intron | 45.0% | |
| CAGAGAAAGGAAGGAGATTG+AGG | - | Chr8:66386906-66386925 | None:intergenic | 45.0% | |
| CATCAAACCCGCATCAGATT+TGG | - | Chr8:66388022-66388041 | None:intergenic | 45.0% | |
| GTTTATGTGGCGTTGTGAGA+AGG | + | Chr8:66387648-66387667 | MsG0880045915.01.T01:CDS | 45.0% | |
| GTTTGAAGAGCCGTTTGCAT+TGG | + | Chr8:66387623-66387642 | MsG0880045915.01.T01:CDS | 45.0% | |
| TAATGGTTTCGGAATCGGTG+AGG | - | Chr8:66386959-66386978 | None:intergenic | 45.0% | |
| ! | CTCGTGTTGAAGGTGTGAAT+TGG | + | Chr8:66387135-66387154 | MsG0880045915.01.T01:CDS | 45.0% |
| !! | TGGGTCGTTGGTAATGGTTT+CGG | - | Chr8:66386970-66386989 | None:intergenic | 45.0% |
| !!! | AACCCATGTGCCACTTCTTT+TGG | + | Chr8:66387322-66387341 | MsG0880045915.01.T01:CDS | 45.0% |
| CAGATACGCGCTTACGTTTC+TGG | - | Chr8:66388169-66388188 | None:intergenic | 50.0% | |
| CGTATCTGAACCAGGTAGTC+CGG | + | Chr8:66388181-66388200 | MsG0880045915.01.T01:CDS | 50.0% | |
| CTTTGTAGCAGATGGGTCGT+TGG | - | Chr8:66386982-66387001 | None:intergenic | 50.0% | |
| GATGCATCAATGACACCACC+CGG | - | Chr8:66388203-66388222 | None:intergenic | 50.0% | |
| GCAGTAAGCTGAGTCATCCA+AGG | - | Chr8:66387266-66387285 | None:intergenic | 50.0% | |
| GCTCTGCTCCTCTTGAACAT+CGG | - | Chr8:66388290-66388309 | None:intergenic | 50.0% | |
| GGTGAGGGATTCATCTTCGA+AGG | - | Chr8:66386943-66386962 | None:intergenic | 50.0% | |
| GTAGCAGCAGCCAATGTAGA+AGG | - | Chr8:66387856-66387875 | None:intergenic | 50.0% | |
| GTATCTGAACCAGGTAGTCC+GGG | + | Chr8:66388182-66388201 | MsG0880045915.01.T01:CDS | 50.0% | |
| ! | AGCAGATGGGTCGTTGGTAA+TGG | - | Chr8:66386976-66386995 | None:intergenic | 50.0% |
| ! | TTCATGGACTGCAGCATCGT+CGG | + | Chr8:66388247-66388266 | MsG0880045915.01.T01:CDS | 50.0% |
| CACTGCAGCCGATGTTCAAG+AGG | + | Chr8:66388279-66388298 | MsG0880045915.01.T01:CDS | 55.0% | |
| CCAGCAGATGCGATTGCCTT+CGG | + | Chr8:66388316-66388335 | MsG0880045915.01.T01:CDS | 55.0% | |
| CGTAAGCGCGTATCTGAACC+AGG | + | Chr8:66388173-66388192 | MsG0880045915.01.T01:CDS | 55.0% | |
| ATGACACCACCCGGACTACC+TGG | - | Chr8:66388194-66388213 | None:intergenic | 60.0% | |
| CCGAAGGCAATCGCATCTGC+TGG | - | Chr8:66388319-66388338 | None:intergenic | 60.0% | |
| TCTGAACCAGGTAGTCCGGG+TGG | + | Chr8:66388185-66388204 | MsG0880045915.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 66386660 | 66388654 | 66386660 | ID=MsG0880045915.01;Name=MsG0880045915.01 |
| Chr8 | mRNA | 66386660 | 66388654 | 66386660 | ID=MsG0880045915.01.T01;Parent=MsG0880045915.01;Name=MsG0880045915.01.T01;_AED=0.19;_eAED=0.19;_QI=234|1|1|1|1|1|4|275|359 |
| Chr8 | exon | 66386660 | 66387352 | 66386660 | ID=MsG0880045915.01.T01:exon:25258;Parent=MsG0880045915.01.T01 |
| Chr8 | exon | 66387490 | 66387691 | 66387490 | ID=MsG0880045915.01.T01:exon:25259;Parent=MsG0880045915.01.T01 |
| Chr8 | exon | 66387827 | 66387960 | 66387827 | ID=MsG0880045915.01.T01:exon:25260;Parent=MsG0880045915.01.T01 |
| Chr8 | exon | 66388095 | 66388654 | 66388095 | ID=MsG0880045915.01.T01:exon:25261;Parent=MsG0880045915.01.T01 |
| Chr8 | five_prime_UTR | 66386660 | 66386893 | 66386660 | ID=MsG0880045915.01.T01:five_prime_utr;Parent=MsG0880045915.01.T01 |
| Chr8 | CDS | 66386894 | 66387352 | 66386894 | ID=MsG0880045915.01.T01:cds;Parent=MsG0880045915.01.T01 |
| Chr8 | CDS | 66387490 | 66387691 | 66387490 | ID=MsG0880045915.01.T01:cds;Parent=MsG0880045915.01.T01 |
| Chr8 | CDS | 66387827 | 66387960 | 66387827 | ID=MsG0880045915.01.T01:cds;Parent=MsG0880045915.01.T01 |
| Chr8 | CDS | 66388095 | 66388379 | 66388095 | ID=MsG0880045915.01.T01:cds;Parent=MsG0880045915.01.T01 |
| Chr8 | three_prime_UTR | 66388380 | 66388654 | 66388380 | ID=MsG0880045915.01.T01:three_prime_utr;Parent=MsG0880045915.01.T01 |
| Gene Sequence |
| Protein sequence |
