AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023146.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023146.01.T01 MTR_8g087990 99.425 348 2 0 1 348 1 348 0.0 715
MsG0480023146.01.T01 MTR_8g087990 89.655 348 2 1 1 348 1 314 0.0 623
MsG0480023146.01.T01 MTR_3g117350 53.763 372 147 7 1 348 1 371 6.83e-127 369
MsG0480023146.01.T01 MTR_4g071540 51.475 373 155 5 1 348 1 372 1.20e-116 342
MsG0480023146.01.T01 MTR_5g026400 38.692 367 198 6 1 343 1 364 7.98e-91 276
MsG0480023146.01.T01 MTR_4g071540 51.125 311 127 4 1 286 1 311 1.93e-85 262
MsG0480023146.01.T01 MTR_5g026400 36.207 348 195 6 20 343 18 362 8.18e-79 246
MsG0480023146.01.T01 MTR_5g026400 35.977 353 194 8 20 343 18 367 6.44e-77 241
MsG0480023146.01.T01 MTR_5g026400 40.000 270 153 4 1 264 1 267 2.00e-63 204
MsG0480023146.01.T01 MTR_5g026400 36.508 252 151 4 20 265 18 266 1.07e-51 174
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023146.01.T01 AT4G18060 71.795 351 96 1 1 348 1 351 0.0 544
MsG0480023146.01.T01 AT4G34660 48.387 372 164 6 1 348 1 368 2.02e-119 349
MsG0480023146.01.T01 AT4G34660 45.968 372 150 6 1 348 1 345 1.10e-110 326
MsG0480023146.01.T01 AT4G34660 47.578 351 147 5 1 348 1 317 2.11e-110 325
MsG0480023146.01.T01 AT1G31440 42.537 268 149 3 1 266 1 265 1.58e-65 214
MsG0480023146.01.T01 AT1G31440 52.000 75 32 1 269 343 361 431 1.30e-21 95.5
MsG0480023146.01.T01 AT4G39020 46.479 71 37 1 272 341 93 163 4.62e-18 80.9

Find 103 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCTTCTGACCACCCTGTT+TGG 0.277296 4:+81398613 None:intergenic
CTAGAGTAGAAATGTATAAT+TGG 0.299207 4:+81398017 None:intergenic
ATCAGAAAGAGGAGATTTCT+AGG 0.303405 4:-81400233 MsG0480023146.01.T01:intron
AAAGGAGGGTGGTTTCCTTC+TGG 0.310065 4:-81398579 MsG0480023146.01.T01:CDS
TTTACCTAGAACTGCCATAT+TGG 0.330252 4:+81400125 None:intergenic
GTGCTTATGGTAATGTCTAT+TGG 0.330383 4:-81398185 MsG0480023146.01.T01:three_prime_UTR
AGAGAAAACAATGTACTTCT+TGG 0.347005 4:-81399646 MsG0480023146.01.T01:CDS
GTTACACAGGTGAGCCAAAC+AGG 0.349387 4:-81398627 MsG0480023146.01.T01:intron
TCTCCAGCCATGTTGCTAGA+TGG 0.356206 4:+81398531 None:intergenic
CTAGGAGACAAGCACGGGTT+AGG 0.357945 4:-81400215 MsG0480023146.01.T01:CDS
GTAGAGGATGGTGGAATTGA+TGG 0.368031 4:-81398410 MsG0480023146.01.T01:three_prime_UTR
TCTGAGGAGTGCTGTAGATA+TGG 0.376609 4:-81402427 MsG0480023146.01.T01:CDS
GCTAAGGCCGCATCAGTATA+TGG 0.376664 4:-81402376 MsG0480023146.01.T01:CDS
AAAGCCAATATGGCAGTTCT+AGG 0.377743 4:-81400129 MsG0480023146.01.T01:CDS
ATAACAACATAACATTTGAT+TGG 0.387803 4:-81404254 MsG0480023146.01.T01:five_prime_UTR
TGCCTCTGCAGCATGCAGTT+TGG 0.390750 4:+81400167 None:intergenic
GCAGGAGCTGAAAGCCAATA+TGG 0.397351 4:-81400139 MsG0480023146.01.T01:CDS
CGATTCTTTCTTCTGTCTGT+CGG 0.410684 4:+81399701 None:intergenic
CATGGCTGGAGAAGTTTACT+AGG 0.414641 4:-81398520 MsG0480023146.01.T01:exon
GCAAGTTGTCAAACAACAAC+AGG 0.420146 4:-81404157 MsG0480023146.01.T01:intron
TGCTGCAGAGGCAAAGATGC+AGG 0.422100 4:-81400157 MsG0480023146.01.T01:CDS
CTCCAGCCATGTTGCTAGAT+GGG 0.428147 4:+81398532 None:intergenic
TCTTATAAGCATATTGAAAC+AGG 0.429719 4:-81402576 MsG0480023146.01.T01:intron
AATGATCAATGGCCCACCTT+TGG 0.437837 4:-81401149 MsG0480023146.01.T01:CDS
TTGGTTGAATGAAGAATGAT+AGG 0.443623 4:-81398166 MsG0480023146.01.T01:three_prime_UTR
AACATATGGAGAAGCTGTAC+AGG 0.447502 4:-81403710 MsG0480023146.01.T01:CDS
CTGTACAGGGCCACTCGTGC+CGG 0.450031 4:-81403696 MsG0480023146.01.T01:CDS
GATCAATGGCCCACCTTTGG+AGG 0.457825 4:-81401146 MsG0480023146.01.T01:CDS
TAGGAGACAAGCACGGGTTA+GGG 0.473006 4:-81400214 MsG0480023146.01.T01:CDS
ATTCAAAGAAGATGAACAAA+AGG 0.473270 4:-81398436 MsG0480023146.01.T01:three_prime_UTR
GTAATCTGCAAGAGTGGAGT+AGG 0.484711 4:-81398122 MsG0480023146.01.T01:three_prime_UTR
TGCTCGCAAACATGTAGAAA+AGG 0.487145 4:-81402350 MsG0480023146.01.T01:CDS
TAAAGAAGCTTCGGCTGCAT+TGG 0.487250 4:-81400106 MsG0480023146.01.T01:CDS
GATTTGTCAATATAAGTCTT+CGG 0.487692 4:-81397922 MsG0480023146.01.T01:three_prime_UTR
AGTTCTAGGTAAAGAAGCTT+CGG 0.491125 4:-81400115 MsG0480023146.01.T01:CDS
TGTACAGGGCCACTCGTGCC+GGG 0.491956 4:-81403695 MsG0480023146.01.T01:CDS
ACAAATCATGTACATTTGAC+AGG 0.500089 4:+81397938 None:intergenic
GGAATCTCAAACTGCTGAGC+AGG 0.503789 4:-81400193 MsG0480023146.01.T01:CDS
TTACGATGCTGAAACGGAAA+AGG 0.507521 4:-81398813 MsG0480023146.01.T01:CDS
GCATCCTTACGATGCTGAAA+CGG 0.514169 4:-81398819 MsG0480023146.01.T01:CDS
CCATTGATCATTTGTCTCAA+AGG 0.516154 4:+81401160 None:intergenic
GGAGAATGCAATGGTAAAGG+AGG 0.517024 4:-81398594 MsG0480023146.01.T01:CDS
ATCCCATCTAGCAACATGGC+TGG 0.518734 4:-81398534 MsG0480023146.01.T01:CDS
AGGAGCACGAAGAATTGAAT+CGG 0.522277 4:-81402330 MsG0480023146.01.T01:CDS
AATGCAGAGACATCAACATA+TGG 0.529225 4:-81403724 MsG0480023146.01.T01:CDS
CCTTTGAGACAAATGATCAA+TGG 0.536520 4:-81401160 MsG0480023146.01.T01:CDS
ATTGGAATTTGAGCTAGTGC+AGG 0.543842 4:+81398035 None:intergenic
AGCCAAACAGGGTGGTCAGA+AGG 0.549155 4:-81398615 MsG0480023146.01.T01:CDS
CGACAGACAGAAGAAAGAAT+CGG 0.549964 4:-81399700 MsG0480023146.01.T01:CDS
CAGGGCCACTCGTGCCGGGA+GGG 0.550379 4:-81403691 MsG0480023146.01.T01:intron
GATTTCTAGGAGACAAGCAC+GGG 0.551675 4:-81400220 MsG0480023146.01.T01:CDS
GATGAACAAAAGGAATGTAG+AGG 0.553167 4:-81398426 MsG0480023146.01.T01:three_prime_UTR
TGACTTTATTGTCGTGCGGA+AGG 0.554090 4:-81398771 MsG0480023146.01.T01:intron
TTGTTTCCTAAAAGCGTCCA+TGG 0.555831 4:+81404197 None:intergenic
GAAGGAGAATGCAATGGTAA+AGG 0.558279 4:-81398597 MsG0480023146.01.T01:CDS
GACTATACCGTTGAGCAAGA+TGG 0.558931 4:+81401116 None:intergenic
ATAAAACAATTCAGCGGCAG+CGG 0.560251 4:-81403786 MsG0480023146.01.T01:CDS
AACAATGTACTTCTTGGCTG+AGG 0.565631 4:-81399640 MsG0480023146.01.T01:intron
TTATGAGAGCTCAGATGTTG+TGG 0.566218 4:-81403763 MsG0480023146.01.T01:CDS
TATGTAAGTTACCCCACAGC+TGG 0.566545 4:+81398337 None:intergenic
TGGCGAGCATCCTCCAAAGG+TGG 0.568058 4:+81401136 None:intergenic
GACAGGTATCACATTGCAGA+GGG 0.568325 4:+81397955 None:intergenic
TGCCAAACTGCATGCTGCAG+AGG 0.569320 4:-81400169 MsG0480023146.01.T01:CDS
ATCTTGCTCAACGGTATAGT+CGG 0.569750 4:-81401114 MsG0480023146.01.T01:CDS
AAAAGGAATGTAGAGGATGG+TGG 0.572679 4:-81398419 MsG0480023146.01.T01:three_prime_UTR
ATCTACCCTCCCGGCACGAG+TGG 0.572718 4:+81403686 None:intergenic
TTCAAATCAATCAATTACAA+AGG 0.575367 4:+81398226 None:intergenic
CCATTCTGGGACATAACGAC+TGG 0.580436 4:+81399672 None:intergenic
AACAAAAGGAATGTAGAGGA+TGG 0.582996 4:-81398422 MsG0480023146.01.T01:three_prime_UTR
GACAGGAACAAAACTTTCTG+AGG 0.585432 4:-81402443 MsG0480023146.01.T01:intron
GGCGAGCATCCTCCAAAGGT+GGG 0.586656 4:+81401137 None:intergenic
AGAGTGGAGTAGGGTGAGTG+AGG 0.594788 4:-81398112 MsG0480023146.01.T01:three_prime_UTR
ATTCTGTGATAACAGACAAG+AGG 0.605004 4:+81398379 None:intergenic
AGGGCTGTAATCTGCAAGAG+TGG 0.605707 4:-81398128 MsG0480023146.01.T01:three_prime_UTR
CCAGTCGTTATGTCCCAGAA+TGG 0.605721 4:-81399672 MsG0480023146.01.T01:CDS
AGATTTCTAGGAGACAAGCA+CGG 0.607307 4:-81400221 MsG0480023146.01.T01:CDS
TTCTGGGACATAACGACTGG+AGG 0.607465 4:+81399675 None:intergenic
AATGCAATGGTAAAGGAGGG+TGG 0.612541 4:-81398590 MsG0480023146.01.T01:CDS
CAGTGACAACATATTAGCTA+AGG 0.621538 4:-81402392 MsG0480023146.01.T01:CDS
GAGAATGCAATGGTAAAGGA+GGG 0.624503 4:-81398593 MsG0480023146.01.T01:CDS
TCACTGTCACTGTACCGCCA+TGG 0.626505 4:-81404214 MsG0480023146.01.T01:exon
AGATGGCGAGCATCCTCCAA+AGG 0.629190 4:+81401133 None:intergenic
GTGGTTTCCTTCTGGCTACG+TGG 0.635363 4:-81398571 MsG0480023146.01.T01:CDS
ATGCTCGCCATCTTGCTCAA+CGG 0.635883 4:-81401123 MsG0480023146.01.T01:CDS
TGACAGGTATCACATTGCAG+AGG 0.638863 4:+81397954 None:intergenic
TAATCTGCAAGAGTGGAGTA+GGG 0.639250 4:-81398121 MsG0480023146.01.T01:three_prime_UTR
TCTGGGACATAACGACTGGA+GGG 0.639602 4:+81399676 None:intergenic
GCTGTGGGGTAACTTACATA+CGG 0.640281 4:-81398334 MsG0480023146.01.T01:three_prime_UTR
ACATATGGAGAAGCTGTACA+GGG 0.640293 4:-81403709 MsG0480023146.01.T01:CDS
ACAGGGCCACTCGTGCCGGG+AGG 0.642315 4:-81403692 MsG0480023146.01.T01:CDS
GAGAATCCCATCTAGCAACA+TGG 0.651891 4:-81398538 MsG0480023146.01.T01:CDS
AAAGAATGAACAGCACAAAG+TGG 0.659222 4:+81398493 None:intergenic
TGGTCAGAAGGAGAATGCAA+TGG 0.665150 4:-81398603 MsG0480023146.01.T01:CDS
AGGGTGACTTTATTGTCGTG+CGG 0.669680 4:-81398775 MsG0480023146.01.T01:CDS
AGCATCGCCATATACTGATG+CGG 0.677187 4:+81402369 None:intergenic
TTACACAGGTGAGCCAAACA+GGG 0.693041 4:-81398626 MsG0480023146.01.T01:intron
CTGGGACATAACGACTGGAG+GGG 0.697996 4:+81399677 None:intergenic
GCTGTAATAAAACAATTCAG+CGG 0.702826 4:-81403792 MsG0480023146.01.T01:CDS
AGGGTGAGTGAGGACCATGT+CGG 0.709227 4:-81398102 MsG0480023146.01.T01:three_prime_UTR
CACAGGTGAGCCAAACAGGG+TGG 0.732609 4:-81398623 MsG0480023146.01.T01:intron
TTTGATAAAGATCACAGACA+CGG 0.744802 4:+81397978 None:intergenic
TTTCCTAAAAGCGTCCATGG+CGG 0.761041 4:+81404200 None:intergenic
GTGGGGTAACTTACATACGG+TGG 0.770226 4:-81398331 MsG0480023146.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATAATTTTAATTATTT+CGG + Chr4:81401875-81401894 None:intergenic 0.0%
!! AAAAAATTCAAAATTGAAAA+TGG - Chr4:81398178-81398197 MsG0480023146.01.T01:three_prime_UTR 10.0%
!!! ATATTTTTATAATGATAATG+AGG + Chr4:81402758-81402777 None:intergenic 10.0%
!!! ATCTTAAAAAATTGTTTTTT+TGG - Chr4:81403286-81403305 MsG0480023146.01.T01:intron 10.0%
!!! TAGTTTTTTTTTTTTTTTTG+TGG - Chr4:81400243-81400262 MsG0480023146.01.T01:intron 10.0%
!!! TTATAATTTTAATTATTTCG+GGG + Chr4:81401873-81401892 None:intergenic 10.0%
!! AGTTATAACAAAATATGTTA+AGG - Chr4:81400799-81400818 MsG0480023146.01.T01:intron 15.0%
!!! AATATTTTACAAAGATGATA+AGG - Chr4:81400409-81400428 MsG0480023146.01.T01:intron 15.0%
!!! AGATTTTTGAAAAATCAATT+TGG + Chr4:81403042-81403061 None:intergenic 15.0%
!!! ATTTTTAAAATACTCTGTTA+TGG - Chr4:81400701-81400720 MsG0480023146.01.T01:intron 15.0%
!!! CTATAATTTGTAGTATTTTA+TGG + Chr4:81400226-81400245 None:intergenic 15.0%
!!! TATAATTTTAATTATTTCGG+GGG + Chr4:81401872-81401891 None:intergenic 15.0%
!!! TTTTTCAATGTTTTACTTTT+GGG - Chr4:81403952-81403971 MsG0480023146.01.T01:intron 15.0%
!! AAAAAAGTAAAGTTGTGAAA+TGG + Chr4:81398121-81398140 None:intergenic 20.0%
!! AAAAAGTAAAGTTGTGAAAT+GGG + Chr4:81398120-81398139 None:intergenic 20.0%
!! AGATGTATTTGAAAGAAATA+AGG + Chr4:81399364-81399383 None:intergenic 20.0%
!! ATAACAACATAACATTTGAT+TGG - Chr4:81397981-81398000 MsG0480023146.01.T01:three_prime_UTR 20.0%
!! ATTCTATAAGCATCTATAAA+AGG - Chr4:81401583-81401602 MsG0480023146.01.T01:intron 20.0%
!! GAAAATCTGTTAAAATAGAA+TGG - Chr4:81399008-81399027 MsG0480023146.01.T01:intron 20.0%
!! TAACAATAACAATAAATCTC+AGG + Chr4:81402382-81402401 None:intergenic 20.0%
!! TTCAAATCAATCAATTACAA+AGG + Chr4:81404012-81404031 None:intergenic 20.0%
!! TTCTATAAGCATCTATAAAA+GGG - Chr4:81401584-81401603 MsG0480023146.01.T01:intron 20.0%
!!! GAAGTCAAAACAATAATTTT+CGG + Chr4:81402994-81403013 None:intergenic 20.0%
!!! GATTTTTCAAAAATCTTTCA+AGG - Chr4:81403046-81403065 MsG0480023146.01.T01:intron 20.0%
!!! GTTTTTCAATGTTTTACTTT+TGG - Chr4:81403951-81403970 MsG0480023146.01.T01:intron 20.0%
!!! TTCTTCTTTAACTTATTGAA+AGG + Chr4:81400469-81400488 None:intergenic 20.0%
!!! TTGATACTTGAAATTTTTCA+GGG - Chr4:81400974-81400993 MsG0480023146.01.T01:intron 20.0%
!!! TTTGATACTTGAAATTTTTC+AGG - Chr4:81400973-81400992 MsG0480023146.01.T01:intron 20.0%
!!! TTTGATTTCGCTAATATTTT+GGG - Chr4:81403014-81403033 MsG0480023146.01.T01:intron 20.0%
! AAACTACATCAGATTATTAC+TGG + Chr4:81401194-81401213 None:intergenic 25.0%
! AAATCCAGGATATCAATATA+TGG + Chr4:81399339-81399358 None:intergenic 25.0%
! AACATATGAAAAGTTTACCT+GGG + Chr4:81399941-81399960 None:intergenic 25.0%
! AACCAATAAGGAAATCTAAT+GGG + Chr4:81399304-81399323 None:intergenic 25.0%
! AAGCATTTAACGAGAAAAAA+AGG - Chr4:81401456-81401475 MsG0480023146.01.T01:intron 25.0%
! AAGCTAGAATGAAATCTAAA+TGG - Chr4:81401658-81401677 MsG0480023146.01.T01:intron 25.0%
! AAGTTTAAATACTTGTTTGC+AGG - Chr4:81398421-81398440 MsG0480023146.01.T01:three_prime_UTR 25.0%
! AATAACAATAAATCTCAGGA+TGG + Chr4:81402378-81402397 None:intergenic 25.0%
! AATCCAGGATATCAATATAT+GGG + Chr4:81399338-81399357 None:intergenic 25.0%
! ACTATTTGTTCTGATATTCT+TGG - Chr4:81401408-81401427 MsG0480023146.01.T01:intron 25.0%
! AGCTAGAATGAAATCTAAAT+GGG - Chr4:81401659-81401678 MsG0480023146.01.T01:intron 25.0%
! AGTGAATAAACAAAATTGTG+TGG + Chr4:81399738-81399757 None:intergenic 25.0%
! AGTTTCAATTTCACCAAAAA+TGG + Chr4:81402341-81402360 None:intergenic 25.0%
! ATATATTGATATCCTGGATT+TGG - Chr4:81399338-81399357 MsG0480023146.01.T01:intron 25.0%
! ATCTTAGGTTTAGATAAATG+CGG + Chr4:81402625-81402644 None:intergenic 25.0%
! ATTAATATATCAGAAAAGCG+TGG - Chr4:81399035-81399054 MsG0480023146.01.T01:intron 25.0%
! ATTACACTATTACTTGATCT+AGG + Chr4:81401685-81401704 None:intergenic 25.0%
! ATTCAAAGAAGATGAACAAA+AGG - Chr4:81403799-81403818 MsG0480023146.01.T01:intron 25.0%
! CAAAATTCTAAATGTTACAC+AGG - Chr4:81403595-81403614 MsG0480023146.01.T01:intron 25.0%
! CAAATATGCTTTGTAAATAG+AGG - Chr4:81401311-81401330 MsG0480023146.01.T01:intron 25.0%
! CAAATCCAATTCATTATAAC+AGG + Chr4:81403543-81403562 None:intergenic 25.0%
! CATGAAGAAATAAATTACAC+AGG + Chr4:81403357-81403376 None:intergenic 25.0%
! CTAAGCAAGTAAAAATACAA+TGG + Chr4:81402797-81402816 None:intergenic 25.0%
! CTAGAGTAGAAATGTATAAT+TGG + Chr4:81404221-81404240 None:intergenic 25.0%
! CTTATAGAATAGTTAGATGA+GGG + Chr4:81401573-81401592 None:intergenic 25.0%
! GAAAGTCTATTCAGTATTAA+TGG - Chr4:81398671-81398690 MsG0480023146.01.T01:intron 25.0%
! GATTTGTCAATATAAGTCTT+CGG - Chr4:81404313-81404332 MsG0480023146.01.T01:five_prime_UTR 25.0%
! GTATAATTGTATTGTCTTGA+TGG - Chr4:81398355-81398374 MsG0480023146.01.T01:three_prime_UTR 25.0%
! TAAAATATTACTTAGTCAGC+TGG + Chr4:81400398-81400417 None:intergenic 25.0%
! TAAACAGAATAGACACAAAA+AGG + Chr4:81399560-81399579 None:intergenic 25.0%
! TCTACAGAAGAAAGAAAAAA+GGG + Chr4:81399253-81399272 None:intergenic 25.0%
! TCTCAAATGCATTTCAAAAT+GGG - Chr4:81398226-81398245 MsG0480023146.01.T01:three_prime_UTR 25.0%
! TCTTATAAGCATATTGAAAC+AGG - Chr4:81399659-81399678 MsG0480023146.01.T01:CDS 25.0%
! TGAGAGAAATATGAATCAAA+TGG - Chr4:81401030-81401049 MsG0480023146.01.T01:intron 25.0%
! TGTAATAAACAGTGAAAGTT+TGG - Chr4:81401238-81401257 MsG0480023146.01.T01:intron 25.0%
! TTCATCCTGTTATAATGAAT+TGG - Chr4:81403535-81403554 MsG0480023146.01.T01:intron 25.0%
! TTCATTATAACAGGATGAAT+CGG + Chr4:81403534-81403553 None:intergenic 25.0%
! TTCTCAAATGCATTTCAAAA+TGG - Chr4:81398225-81398244 MsG0480023146.01.T01:three_prime_UTR 25.0%
! TTTATCTAAACCTAAGATGA+TGG - Chr4:81402627-81402646 MsG0480023146.01.T01:CDS 25.0%
! TTTCTATGATTGTTAACACT+TGG - Chr4:81402491-81402510 MsG0480023146.01.T01:intron 25.0%
!! CTGCTTTAACAATTTCTTTT+TGG + Chr4:81399619-81399638 None:intergenic 25.0%
!! GAAGTGACTTTTCAAAATTT+GGG - Chr4:81403238-81403257 MsG0480023146.01.T01:intron 25.0%
!! GATCATGCTTATGATTTTAT+AGG - Chr4:81402279-81402298 MsG0480023146.01.T01:intron 25.0%
!! TCTTAACCTTATTTACTCAT+TGG - Chr4:81401966-81401985 MsG0480023146.01.T01:intron 25.0%
!! TTATGGTTAGGTTTTACTTA+GGG - Chr4:81402887-81402906 MsG0480023146.01.T01:intron 25.0%
!! TTCGATAAGAGTGTAAAAAA+GGG + Chr4:81400858-81400877 None:intergenic 25.0%
!! TTGCTATTGTTATTGTTATG+TGG - Chr4:81402650-81402669 MsG0480023146.01.T01:intron 25.0%
!! TTTTCCTTTCAAGATATCAT+GGG - Chr4:81403071-81403090 MsG0480023146.01.T01:intron 25.0%
!!! ATTGTTTTTTTGGAATCACT+CGG - Chr4:81403296-81403315 MsG0480023146.01.T01:intron 25.0%
!!! CAGTTGATTTTAAATTATGC+AGG + Chr4:81401525-81401544 None:intergenic 25.0%
!!! CTGTGTAACATTTAGAATTT+TGG + Chr4:81403597-81403616 None:intergenic 25.0%
!!! CTTTGATTTCGCTAATATTT+TGG - Chr4:81403013-81403032 MsG0480023146.01.T01:intron 25.0%
!!! TAGATTTCATTCTAGCTTAT+TGG + Chr4:81401656-81401675 None:intergenic 25.0%
!!! TCCTGTTATCTATTTTTTCT+AGG - Chr4:81403505-81403524 MsG0480023146.01.T01:intron 25.0%
!!! TCTAGTTGTATAAGTTTTAG+TGG - Chr4:81399962-81399981 MsG0480023146.01.T01:intron 25.0%
!!! TTTACTTGCTTAGTTTTGTT+AGG - Chr4:81402804-81402823 MsG0480023146.01.T01:intron 25.0%
!!! TTTGACTTTTGATACTATAG+AGG - Chr4:81400943-81400962 MsG0480023146.01.T01:intron 25.0%
AACTCTCATATATCAGTTTG+AGG - Chr4:81402856-81402875 MsG0480023146.01.T01:intron 30.0%
AAGTAATAGTGTAATGCAAC+TGG - Chr4:81401690-81401709 MsG0480023146.01.T01:intron 30.0%
AATGAGCTTAATCTTAAGTG+AGG - Chr4:81399410-81399429 MsG0480023146.01.T01:intron 30.0%
ACAAATCATGTACATTTGAC+AGG + Chr4:81404300-81404319 None:intergenic 30.0%
ACAACAAGAAAGAATTCACA+TGG + Chr4:81403099-81403118 None:intergenic 30.0%
ACATGACAATCTTGAAAACA+AGG + Chr4:81400190-81400209 None:intergenic 30.0%
ACTCTCATATATCAGTTTGA+GGG - Chr4:81402857-81402876 MsG0480023146.01.T01:intron 30.0%
AGAAAGAAAAAAGGGAATAG+AGG + Chr4:81399245-81399264 None:intergenic 30.0%
AGAGAAAACAATGTACTTCT+TGG - Chr4:81402589-81402608 MsG0480023146.01.T01:CDS 30.0%
AGAGACCATATAAATTGATG+GGG - Chr4:81399446-81399465 MsG0480023146.01.T01:intron 30.0%
ATATTCTTGGTCAAGTACAT+GGG - Chr4:81401421-81401440 MsG0480023146.01.T01:intron 30.0%
ATATTTGAATCTGTGCAGAA+GGG + Chr4:81400901-81400920 None:intergenic 30.0%
ATCCAAAACACTTACAAGTT+TGG + Chr4:81402247-81402266 None:intergenic 30.0%
ATCCAGGATATCAATATATG+GGG + Chr4:81399337-81399356 None:intergenic 30.0%
ATCCTCATAAACAATAGTCA+TGG - Chr4:81399767-81399786 MsG0480023146.01.T01:intron 30.0%
ATGCAATGCAAAACCAAAAA+AGG + Chr4:81403778-81403797 None:intergenic 30.0%
ATGCTTAAAATATGAAGCTC+TGG - Chr4:81400437-81400456 MsG0480023146.01.T01:intron 30.0%
ATGTGAATATGAAGAAGATC+AGG + Chr4:81399114-81399133 None:intergenic 30.0%
ATTGATTGACAAATCAAAGC+TGG + Chr4:81398890-81398909 None:intergenic 30.0%
CAACATATGAAAAGTTTACC+TGG + Chr4:81399942-81399961 None:intergenic 30.0%
CATCTTGAATCTTTATTGCA+TGG - Chr4:81401835-81401854 MsG0480023146.01.T01:intron 30.0%
CGAAAACCAATGAGTAAATA+AGG + Chr4:81401975-81401994 None:intergenic 30.0%
GAACCAATAAGGAAATCTAA+TGG + Chr4:81399305-81399324 None:intergenic 30.0%
GAGAGACCATATAAATTGAT+GGG - Chr4:81399445-81399464 MsG0480023146.01.T01:intron 30.0%
GCCTAGAAAAAATAGATAAC+AGG + Chr4:81403509-81403528 None:intergenic 30.0%
GCTGTAATAAAACAATTCAG+CGG - Chr4:81398443-81398462 MsG0480023146.01.T01:three_prime_UTR 30.0%
GCTTATAGAATAGTTAGATG+AGG + Chr4:81401574-81401593 None:intergenic 30.0%
GTCTACAGAAGAAAGAAAAA+AGG + Chr4:81399254-81399273 None:intergenic 30.0%
TACACAGGTTATTGTTCATA+AGG + Chr4:81403342-81403361 None:intergenic 30.0%
TACCATGACTATTGTTTATG+AGG + Chr4:81399772-81399791 None:intergenic 30.0%
TATATTTGAATCTGTGCAGA+AGG + Chr4:81400902-81400921 None:intergenic 30.0%
TCATACTGAAATGCAAAAGA+CGG + Chr4:81403267-81403286 None:intergenic 30.0%
TGCAATGCAAAACCAAAAAA+GGG + Chr4:81403777-81403796 None:intergenic 30.0%
TGTGAATATGAAGAAGATCA+GGG + Chr4:81399113-81399132 None:intergenic 30.0%
TTACATTTAAGTCACTTCTG+AGG + Chr4:81398802-81398821 None:intergenic 30.0%
TTCATTTATGTGAGTATGCA+TGG - Chr4:81400028-81400047 MsG0480023146.01.T01:intron 30.0%
TTCGAAATTCAATCAGAAAG+AGG - Chr4:81401991-81402010 MsG0480023146.01.T01:intron 30.0%
TTGGTTGAATGAAGAATGAT+AGG - Chr4:81404069-81404088 MsG0480023146.01.T01:intron 30.0%
TTGTAGGTTGTATGTGTATT+AGG - Chr4:81398649-81398668 MsG0480023146.01.T01:intron 30.0%
TTTCTTCATGAACTGATCTT+TGG - Chr4:81403367-81403386 MsG0480023146.01.T01:intron 30.0%
TTTCTTCTGTAGACTTTGAT+TGG - Chr4:81399260-81399279 MsG0480023146.01.T01:intron 30.0%
TTTGATAAAGATCACAGACA+CGG + Chr4:81404260-81404279 None:intergenic 30.0%
! CATGCTTATGATTTTATAGG+TGG - Chr4:81402282-81402301 MsG0480023146.01.T01:intron 30.0%
! CTACAAAAGTATGATTCAGA+AGG + Chr4:81399486-81399505 None:intergenic 30.0%
! CTTATGGTTAGGTTTTACTT+AGG - Chr4:81402886-81402905 MsG0480023146.01.T01:intron 30.0%
! CTTTTCCTTTCAAGATATCA+TGG - Chr4:81403070-81403089 MsG0480023146.01.T01:intron 30.0%
! GGAAGTGACTTTTCAAAATT+TGG - Chr4:81403237-81403256 MsG0480023146.01.T01:intron 30.0%
! GTTCGATAAGAGTGTAAAAA+AGG + Chr4:81400859-81400878 None:intergenic 30.0%
! TTTCTTTTTCCTGTGATTTG+TGG - Chr4:81399698-81399717 MsG0480023146.01.T01:CDS 30.0%
! TTTTGGTGAAATTGAAACTG+AGG - Chr4:81402342-81402361 MsG0480023146.01.T01:CDS 30.0%
!! AAAAGAATTTTGATCCGACA+TGG + Chr4:81404150-81404169 None:intergenic 30.0%
!! AAAGGAACTTAGCTTTTCAA+AGG - Chr4:81403440-81403459 MsG0480023146.01.T01:intron 30.0%
!! AAGGAACTTAGCTTTTCAAA+GGG - Chr4:81403441-81403460 MsG0480023146.01.T01:intron 30.0%
!! AATTTTGAAAAGTCACTTCC+TGG + Chr4:81403237-81403256 None:intergenic 30.0%
!! ACTTTTGATAGCCAATATGA+AGG - Chr4:81401812-81401831 MsG0480023146.01.T01:intron 30.0%
!! AGCTTTGATTTGTCAATCAA+TGG - Chr4:81398889-81398908 MsG0480023146.01.T01:intron 30.0%
!! AGTTCTTTGAAATCTATGAG+AGG - Chr4:81403188-81403207 MsG0480023146.01.T01:intron 30.0%
!!! ATACTTGAAATTTTTCAGGG+AGG - Chr4:81400977-81400996 MsG0480023146.01.T01:intron 30.0%
!!! ATAGGATTTTGAAGTAACTG+AGG - Chr4:81404087-81404106 MsG0480023146.01.T01:intron 30.0%
!!! GAGGGTAGATATTTTTTTCT+TGG - Chr4:81398562-81398581 MsG0480023146.01.T01:CDS 30.0%
!!! TAGGATTTTGAAGTAACTGA+GGG - Chr4:81404088-81404107 MsG0480023146.01.T01:intron 30.0%
!!! TGTGTCTTTTTTTGTGCTTA+TGG - Chr4:81404037-81404056 MsG0480023146.01.T01:intron 30.0%
!!! TTTTTTTGAGAACCCAGATT+CGG + Chr4:81398164-81398183 None:intergenic 30.0%
AAACAATAGTCATGGTAGAC+AGG - Chr4:81399775-81399794 MsG0480023146.01.T01:intron 35.0%
AAACCCCCCATCAATTTATA+TGG + Chr4:81399454-81399473 None:intergenic 35.0%
AAAGAAATAAGGCCAAATCC+AGG + Chr4:81399353-81399372 None:intergenic 35.0%
AAAGAATGAACAGCACAAAG+TGG + Chr4:81403745-81403764 None:intergenic 35.0%
AACAAAAGGAATGTAGAGGA+TGG - Chr4:81403813-81403832 MsG0480023146.01.T01:intron 35.0%
AATGCAGAGACATCAACATA+TGG - Chr4:81398511-81398530 MsG0480023146.01.T01:exon 35.0%
ACAATAGCAACCATCATCTT+AGG + Chr4:81402640-81402659 None:intergenic 35.0%
ACACATGTAAGTCAAAAGCT+TGG - Chr4:81401162-81401181 MsG0480023146.01.T01:CDS 35.0%
ACAGAGAGTGATATATAGCA+CGG + Chr4:81400071-81400090 None:intergenic 35.0%
ACATGAAATCTGGTCATTCT+GGG + Chr4:81400355-81400374 None:intergenic 35.0%
AGACCATATAAATTGATGGG+GGG - Chr4:81399448-81399467 MsG0480023146.01.T01:intron 35.0%
AGTAAAGTTGTGAAATGGGT+CGG + Chr4:81398116-81398135 None:intergenic 35.0%
ATCAAATGGTTTCAGTTTCC+AGG - Chr4:81401044-81401063 MsG0480023146.01.T01:intron 35.0%
ATCAGAAAGAGGAGATTTCT+AGG - Chr4:81402002-81402021 MsG0480023146.01.T01:intron 35.0%
ATTATTGTGGCTGTCAGATT+AGG - Chr4:81398706-81398725 MsG0480023146.01.T01:intron 35.0%
ATTCTGTGATAACAGACAAG+AGG + Chr4:81403859-81403878 None:intergenic 35.0%
CAGTGACAACATATTAGCTA+AGG - Chr4:81399843-81399862 MsG0480023146.01.T01:intron 35.0%
CCATTGATCATTTGTCTCAA+AGG + Chr4:81401078-81401097 None:intergenic 35.0%
CCTACAATTATGAGCTTACA+AGG + Chr4:81398636-81398655 None:intergenic 35.0%
CCTTGTAAGCTCATAATTGT+AGG - Chr4:81398633-81398652 MsG0480023146.01.T01:intron 35.0%
CTAACTTCAAATCCGAATCT+GGG - Chr4:81398149-81398168 MsG0480023146.01.T01:three_prime_UTR 35.0%
CTTTGTAGTCAGATTCTCTA+CGG + Chr4:81398984-81399003 None:intergenic 35.0%
GAAAAAAATATCTACCCTCC+CGG + Chr4:81398561-81398580 None:intergenic 35.0%
GACAGCTATCATGAAGAAAT+TGG + Chr4:81399167-81399186 None:intergenic 35.0%
GAGACCATATAAATTGATGG+GGG - Chr4:81399447-81399466 MsG0480023146.01.T01:intron 35.0%
GATATTCTTGGTCAAGTACA+TGG - Chr4:81401420-81401439 MsG0480023146.01.T01:intron 35.0%
GATGAACAAAAGGAATGTAG+AGG - Chr4:81403809-81403828 MsG0480023146.01.T01:intron 35.0%
GATTCAAGATGCCTTCATAT+TGG + Chr4:81401826-81401845 None:intergenic 35.0%
GATTGTGAGTGACATTATTG+TGG - Chr4:81398693-81398712 MsG0480023146.01.T01:intron 35.0%
GGAGAGACCATATAAATTGA+TGG - Chr4:81399444-81399463 MsG0480023146.01.T01:intron 35.0%
GTGAATATGAAGAAGATCAG+GGG + Chr4:81399112-81399131 None:intergenic 35.0%
TAAATAGAGGAAAAGAGACG+AGG - Chr4:81401324-81401343 MsG0480023146.01.T01:intron 35.0%
TACAGCATTCATTCACATCA+AGG + Chr4:81398338-81398357 None:intergenic 35.0%
TATTCTTGGTCAAGTACATG+GGG - Chr4:81401422-81401441 MsG0480023146.01.T01:intron 35.0%
TCCAGGATATCAATATATGG+GGG + Chr4:81399336-81399355 None:intergenic 35.0%
TCTAACTTCAAATCCGAATC+TGG - Chr4:81398148-81398167 MsG0480023146.01.T01:three_prime_UTR 35.0%
TGTGCCAATTGTCAAACAAT+TGG - Chr4:81400372-81400391 MsG0480023146.01.T01:intron 35.0%
TTTACCTAGAACTGCCATAT+TGG + Chr4:81402113-81402132 None:intergenic 35.0%
! ACTTATGCTGAAGTTTCTAG+TGG - Chr4:81400309-81400328 MsG0480023146.01.T01:intron 35.0%
! AGTTTGAGGGATTTGACTTA+TGG - Chr4:81402870-81402889 MsG0480023146.01.T01:intron 35.0%
! GACTTTTGATACTATAGAGG+AGG - Chr4:81400946-81400965 MsG0480023146.01.T01:intron 35.0%
! GTGCTTATGGTAATGTCTAT+TGG - Chr4:81404050-81404069 MsG0480023146.01.T01:intron 35.0%
! TGCCAAACTTGTAAGTGTTT+TGG - Chr4:81402242-81402261 MsG0480023146.01.T01:intron 35.0%
! TTTTGGTAAGCATAGAGACT+CGG + Chr4:81403580-81403599 None:intergenic 35.0%
!! AGCAAAGACTGACTTTTCAA+AGG - Chr4:81402170-81402189 MsG0480023146.01.T01:intron 35.0%
!! AGGAAATACTCTGAAGTGAT+AGG - Chr4:81401344-81401363 MsG0480023146.01.T01:intron 35.0%
!! AGTTCTAGGTAAAGAAGCTT+CGG - Chr4:81402120-81402139 MsG0480023146.01.T01:intron 35.0%
!! ATCAATATATGGGGGTATTG+AGG + Chr4:81399328-81399347 None:intergenic 35.0%
!! CCTTTGAGACAAATGATCAA+TGG - Chr4:81401075-81401094 MsG0480023146.01.T01:intron 35.0%
!! TCAATATATGGGGGTATTGA+GGG + Chr4:81399327-81399346 None:intergenic 35.0%
!!! TTTGCTTTGTCTCCCTTTTT+TGG - Chr4:81403762-81403781 MsG0480023146.01.T01:CDS 35.0%
!!! TTTTCAAAGGCTTGTTGCTA+TGG - Chr4:81402183-81402202 MsG0480023146.01.T01:intron 35.0%
AAAAGGAATGTAGAGGATGG+TGG - Chr4:81403816-81403835 MsG0480023146.01.T01:intron 40.0%
AAAGCCAATATGGCAGTTCT+AGG - Chr4:81402106-81402125 MsG0480023146.01.T01:intron 40.0%
AACAATGTACTTCTTGGCTG+AGG - Chr4:81402595-81402614 MsG0480023146.01.T01:CDS 40.0%
AACATATGGAGAAGCTGTAC+AGG - Chr4:81398525-81398544 MsG0480023146.01.T01:CDS 40.0%
AAGAAAAATGTGTCCAGCTG+TGG - Chr4:81403885-81403904 MsG0480023146.01.T01:intron 40.0%
AAGTGAGTTGCTCACATTAG+AGG - Chr4:81398937-81398956 MsG0480023146.01.T01:intron 40.0%
AATATGAAGAAGATCAGGGG+TGG + Chr4:81399109-81399128 None:intergenic 40.0%
ACAAAACTGTCATCTGATGC+AGG - Chr4:81399589-81399608 MsG0480023146.01.T01:intron 40.0%
ACAGGTGTAATACTGATAGG+CGG + Chr4:81401741-81401760 None:intergenic 40.0%
ACATATGGAGAAGCTGTACA+GGG - Chr4:81398526-81398545 MsG0480023146.01.T01:CDS 40.0%
ACCCAAACTTTCCGAAAAGA+CGG - Chr4:81399079-81399098 MsG0480023146.01.T01:intron 40.0%
ACCCCCATATATTGATATCC+TGG - Chr4:81399332-81399351 MsG0480023146.01.T01:intron 40.0%
AGAAAAATGTGTCCAGCTGT+GGG - Chr4:81403886-81403905 MsG0480023146.01.T01:intron 40.0%
AGAAAGCAAACAGAGTCTAG+TGG - Chr4:81398768-81398787 MsG0480023146.01.T01:intron 40.0%
AGTGAATGGACCTAACAGAA+TGG + Chr4:81399189-81399208 None:intergenic 40.0%
ATAAAACAATTCAGCGGCAG+CGG - Chr4:81398449-81398468 MsG0480023146.01.T01:three_prime_UTR 40.0%
ATCTTGCTCAACGGTATAGT+CGG - Chr4:81401121-81401140 MsG0480023146.01.T01:CDS 40.0%
ATTGGAATTTGAGCTAGTGC+AGG + Chr4:81404203-81404222 None:intergenic 40.0%
CACACAGGTGTAATACTGAT+AGG + Chr4:81401744-81401763 None:intergenic 40.0%
CACATGAAATCTGGTCATTC+TGG + Chr4:81400356-81400375 None:intergenic 40.0%
CGACAGACAGAAGAAAGAAT+CGG - Chr4:81402535-81402554 MsG0480023146.01.T01:intron 40.0%
CGATTCTTTCTTCTGTCTGT+CGG + Chr4:81402537-81402556 None:intergenic 40.0%
CTATGAGAGGAAGCTTCAAA+GGG - Chr4:81403201-81403220 MsG0480023146.01.T01:intron 40.0%
CTGGCCAATTGTTTGACAAT+TGG + Chr4:81400379-81400398 None:intergenic 40.0%
CTTCATGAACTGATCTTTGG+TGG - Chr4:81403370-81403389 MsG0480023146.01.T01:intron 40.0%
CTTCTGTAGACTTTGATTGG+AGG - Chr4:81399263-81399282 MsG0480023146.01.T01:intron 40.0%
GAAGGAGAATGCAATGGTAA+AGG - Chr4:81403638-81403657 MsG0480023146.01.T01:intron 40.0%
GAATAGGAATTCTGCTAGAG+AGG + Chr4:81399213-81399232 None:intergenic 40.0%
GACAATTGGCACATGAAATC+TGG + Chr4:81400365-81400384 None:intergenic 40.0%
GACAGGAACAAAACTTTCTG+AGG - Chr4:81399792-81399811 MsG0480023146.01.T01:intron 40.0%
GAGAATGCAATGGTAAAGGA+GGG - Chr4:81403642-81403661 MsG0480023146.01.T01:intron 40.0%
GAGCAAGACATCTGAAAGAA+TGG + Chr4:81400105-81400124 None:intergenic 40.0%
GCAAGTTGTCAAACAACAAC+AGG - Chr4:81398078-81398097 MsG0480023146.01.T01:three_prime_UTR 40.0%
GGAACCCATGATATCTTGAA+AGG + Chr4:81403078-81403097 None:intergenic 40.0%
GGCCCATTAGATTTCCTTAT+TGG - Chr4:81399299-81399318 MsG0480023146.01.T01:intron 40.0%
TAATCTGCAAGAGTGGAGTA+GGG - Chr4:81404114-81404133 MsG0480023146.01.T01:intron 40.0%
TCTATGAGAGGAAGCTTCAA+AGG - Chr4:81403200-81403219 MsG0480023146.01.T01:intron 40.0%
TGATAGCTGTCCATTCTGTT+AGG - Chr4:81399176-81399195 MsG0480023146.01.T01:intron 40.0%
TGCTCGCAAACATGTAGAAA+AGG - Chr4:81399885-81399904 MsG0480023146.01.T01:intron 40.0%
TGTTACCTTACCTTATCACG+TGG - Chr4:81400536-81400555 MsG0480023146.01.T01:intron 40.0%
TTAAGTGAGGTAGTGAGAGA+GGG - Chr4:81399423-81399442 MsG0480023146.01.T01:intron 40.0%
TTACGATGCTGAAACGGAAA+AGG - Chr4:81403422-81403441 MsG0480023146.01.T01:intron 40.0%
TTATGAGAGCTCAGATGTTG+TGG - Chr4:81398472-81398491 MsG0480023146.01.T01:three_prime_UTR 40.0%
TTGAGCAGAACCATGATCTA+AGG + Chr4:81401910-81401929 None:intergenic 40.0%
! AAAAAAGGGAGCACAGTAAG+AGG + Chr4:81400844-81400863 None:intergenic 40.0%
! AAAGGGAATAGAGGCGTAAT+TGG + Chr4:81399236-81399255 None:intergenic 40.0%
! AAGGGAATAGAGGCGTAATT+GGG + Chr4:81399235-81399254 None:intergenic 40.0%
! ACCGTCTTTTCGGAAAGTTT+GGG + Chr4:81399083-81399102 None:intergenic 40.0%
! AGATTTCTAGGAGACAAGCA+CGG - Chr4:81402014-81402033 MsG0480023146.01.T01:intron 40.0%
! AGGAGCACGAAGAATTGAAT+CGG - Chr4:81399905-81399924 MsG0480023146.01.T01:CDS 40.0%
! ATAGAGGCGTAATTGGGAAT+AGG + Chr4:81399229-81399248 None:intergenic 40.0%
! CTCCTTTTTCCCTCAACTTT+GGG + Chr4:81401781-81401800 None:intergenic 40.0%
! GAGGGATTTGACTTATGGTT+AGG - Chr4:81402875-81402894 MsG0480023146.01.T01:intron 40.0%
! TGGTTTCAGTTTCCAGGTTT+TGG - Chr4:81401050-81401069 MsG0480023146.01.T01:intron 40.0%
! TGTTTTCTCTGAGCCATTCT+GGG + Chr4:81402579-81402598 None:intergenic 40.0%
! TTGTTTTCTCTGAGCCATTC+TGG + Chr4:81402580-81402599 None:intergenic 40.0%
! TTTTCCGTTTCAGCATCGTA+AGG + Chr4:81403423-81403442 None:intergenic 40.0%
!! CTTTTTCCTGTGATTTGTGG+TGG - Chr4:81399701-81399720 MsG0480023146.01.T01:CDS 40.0%
!! TCAAGAGTTGCAGCCATTTT+TGG - Chr4:81402325-81402344 MsG0480023146.01.T01:CDS 40.0%
!! TTGTTTCCTAAAAGCGTCCA+TGG + Chr4:81398041-81398060 None:intergenic 40.0%
AATGATCAATGGCCCACCTT+TGG - Chr4:81401086-81401105 MsG0480023146.01.T01:intron 45.0%
AATGCAATGGTAAAGGAGGG+TGG - Chr4:81403645-81403664 MsG0480023146.01.T01:intron 45.0%
ACATAGCTGTCCCAAAGTTG+AGG - Chr4:81401768-81401787 MsG0480023146.01.T01:intron 45.0%
AGCATCGCCATATACTGATG+CGG + Chr4:81399869-81399888 None:intergenic 45.0%
AGGGTGACTTTATTGTCGTG+CGG - Chr4:81403460-81403479 MsG0480023146.01.T01:intron 45.0%
AGGTGTAATACTGATAGGCG+GGG + Chr4:81401739-81401758 None:intergenic 45.0%
ATTGGAGGCCAAATTGTTGC+GGG - Chr4:81399278-81399297 MsG0480023146.01.T01:intron 45.0%
CAGGTGTAATACTGATAGGC+GGG + Chr4:81401740-81401759 None:intergenic 45.0%
CATAGCTGTCCCAAAGTTGA+GGG - Chr4:81401769-81401788 MsG0480023146.01.T01:intron 45.0%
CATGGCTGGAGAAGTTTACT+AGG - Chr4:81403715-81403734 MsG0480023146.01.T01:CDS 45.0%
CCAAAGTTGAGGGAAAAAGG+AGG - Chr4:81401779-81401798 MsG0480023146.01.T01:intron 45.0%
CTAAATGCAGCCACGTGATA+AGG + Chr4:81400549-81400568 None:intergenic 45.0%
CTAAGTCCACCACAAATCAC+AGG + Chr4:81399710-81399729 None:intergenic 45.0%
CTGTCTGCATGACATGCATT+GGG - Chr4:81400596-81400615 MsG0480023146.01.T01:intron 45.0%
CTTAAGTGAGGTAGTGAGAG+AGG - Chr4:81399422-81399441 MsG0480023146.01.T01:intron 45.0%
CTTATCACGTGGCTGCATTT+AGG - Chr4:81400547-81400566 MsG0480023146.01.T01:intron 45.0%
GAAAAATGTGTCCAGCTGTG+GGG - Chr4:81403887-81403906 MsG0480023146.01.T01:intron 45.0%
GACAGCTATGTAATGCACAC+AGG + Chr4:81401759-81401778 None:intergenic 45.0%
GACAGGTATCACATTGCAGA+GGG + Chr4:81404283-81404302 None:intergenic 45.0%
GACTATACCGTTGAGCAAGA+TGG + Chr4:81401122-81401141 None:intergenic 45.0%
GAGAATCCCATCTAGCAACA+TGG - Chr4:81403697-81403716 MsG0480023146.01.T01:CDS 45.0%
GATTGGAGGCCAAATTGTTG+CGG - Chr4:81399277-81399296 MsG0480023146.01.T01:intron 45.0%
GCATCCTTACGATGCTGAAA+CGG - Chr4:81403416-81403435 MsG0480023146.01.T01:intron 45.0%
GCTGTGGGGTAACTTACATA+CGG - Chr4:81403901-81403920 MsG0480023146.01.T01:intron 45.0%
GGAGAATGCAATGGTAAAGG+AGG - Chr4:81403641-81403660 MsG0480023146.01.T01:intron 45.0%
GTAATCTGCAAGAGTGGAGT+AGG - Chr4:81404113-81404132 MsG0480023146.01.T01:intron 45.0%
GTCCCAAAGTTGAGGGAAAA+AGG - Chr4:81401776-81401795 MsG0480023146.01.T01:intron 45.0%
GTCTCAAAGGATCCAAAACC+TGG + Chr4:81401065-81401084 None:intergenic 45.0%
TAAAGAAGCTTCGGCTGCAT+TGG - Chr4:81402129-81402148 MsG0480023146.01.T01:intron 45.0%
TATGTAAGTTACCCCACAGC+TGG + Chr4:81403901-81403920 None:intergenic 45.0%
TCTGCTAGAGAGGAAGTGAA+TGG + Chr4:81399203-81399222 None:intergenic 45.0%
TGACAGGTATCACATTGCAG+AGG + Chr4:81404284-81404303 None:intergenic 45.0%
TGACTTTATTGTCGTGCGGA+AGG - Chr4:81403464-81403483 MsG0480023146.01.T01:intron 45.0%
TGGTCAGAAGGAGAATGCAA+TGG - Chr4:81403632-81403651 MsG0480023146.01.T01:intron 45.0%
TGTCTGCATGACATGCATTG+GGG - Chr4:81400597-81400616 MsG0480023146.01.T01:intron 45.0%
TTACACAGGTGAGCCAAACA+GGG - Chr4:81403609-81403628 MsG0480023146.01.T01:intron 45.0%
! ACGGATTACTAGAGCGAATC+TGG + Chr4:81398965-81398984 None:intergenic 45.0%
! ATGAACTGATCTTTGGTGGC+TGG - Chr4:81403374-81403393 MsG0480023146.01.T01:intron 45.0%
! CCTCCTTTTTCCCTCAACTT+TGG + Chr4:81401782-81401801 None:intergenic 45.0%
! CTTCTGGCTACGTGGAAAAA+CGG - Chr4:81403672-81403691 MsG0480023146.01.T01:intron 45.0%
! CTTTTCGGAAAGTTTGGGTG+TGG + Chr4:81399078-81399097 None:intergenic 45.0%
! GACCGTCTTTTCGGAAAGTT+TGG + Chr4:81399084-81399103 None:intergenic 45.0%
! GATTTCTAGGAGACAAGCAC+GGG - Chr4:81402015-81402034 MsG0480023146.01.T01:intron 45.0%
!! GAATCGGCTTTTATCTTCCC+AGG - Chr4:81399921-81399940 MsG0480023146.01.T01:CDS 45.0%
!! GGGTATTGAGGGAACCAATA+AGG + Chr4:81399316-81399335 None:intergenic 45.0%
!! GTAGAGGATGGTGGAATTGA+TGG - Chr4:81403825-81403844 MsG0480023146.01.T01:intron 45.0%
!! TCTGAGGAGTGCTGTAGATA+TGG - Chr4:81399808-81399827 MsG0480023146.01.T01:intron 45.0%
!! TTTCCTAAAAGCGTCCATGG+CGG + Chr4:81398038-81398057 None:intergenic 45.0%
!!! ATTATAATTTTAATTATTTC+GGG + Chr4:81401874-81401893 None:intergenic 5.0%
AAAGGAGGGTGGTTTCCTTC+TGG - Chr4:81403656-81403675 MsG0480023146.01.T01:intron 50.0%
AGGGCTGTAATCTGCAAGAG+TGG - Chr4:81404107-81404126 MsG0480023146.01.T01:intron 50.0%
ATCCCATCTAGCAACATGGC+TGG - Chr4:81403701-81403720 MsG0480023146.01.T01:CDS 50.0%
ATGCTCGCCATCTTGCTCAA+CGG - Chr4:81401112-81401131 MsG0480023146.01.T01:CDS 50.0%
CCAGTCGTTATGTCCCAGAA+TGG - Chr4:81402563-81402582 MsG0480023146.01.T01:intron 50.0%
CTCCAGCCATGTTGCTAGAT+GGG + Chr4:81403706-81403725 None:intergenic 50.0%
GCAGGAGCTGAAAGCCAATA+TGG - Chr4:81402096-81402115 MsG0480023146.01.T01:intron 50.0%
GCATGTCATGCAGACAGCAA+GGG + Chr4:81400593-81400612 None:intergenic 50.0%
GCTAAGGCCGCATCAGTATA+TGG - Chr4:81399859-81399878 MsG0480023146.01.T01:intron 50.0%
GCTGTCTGCATGACATGCAT+TGG - Chr4:81400595-81400614 MsG0480023146.01.T01:intron 50.0%
GGAATCTCAAACTGCTGAGC+AGG - Chr4:81402042-81402061 MsG0480023146.01.T01:intron 50.0%
GTCTGCATGACATGCATTGG+GGG - Chr4:81400598-81400617 MsG0480023146.01.T01:intron 50.0%
GTGGGGTAACTTACATACGG+TGG - Chr4:81403904-81403923 MsG0480023146.01.T01:intron 50.0%
GTTACACAGGTGAGCCAAAC+AGG - Chr4:81403608-81403627 MsG0480023146.01.T01:intron 50.0%
TCAAAGGGCGAGTAGTATCC+AGG - Chr4:81403216-81403235 MsG0480023146.01.T01:intron 50.0%
TCTCCAGCCATGTTGCTAGA+TGG + Chr4:81403707-81403726 None:intergenic 50.0%
TCTGCATGACATGCATTGGG+GGG - Chr4:81400599-81400618 MsG0480023146.01.T01:intron 50.0%
TGCAGCCACGTGATAAGGTA+AGG + Chr4:81400544-81400563 None:intergenic 50.0%
TGCATGTCATGCAGACAGCA+AGG + Chr4:81400594-81400613 None:intergenic 50.0%
! CGTTTTTCCACGTAGCCAGA+AGG + Chr4:81403674-81403693 None:intergenic 50.0%
! CTAATGGGCCCGCAACAATT+TGG + Chr4:81399289-81399308 None:intergenic 50.0%
! TAGGAGACAAGCACGGGTTA+GGG - Chr4:81402021-81402040 MsG0480023146.01.T01:intron 50.0%
! TCTGGGACATAACGACTGGA+GGG + Chr4:81402562-81402581 None:intergenic 50.0%
!! CCATTCTGGGACATAACGAC+TGG + Chr4:81402566-81402585 None:intergenic 50.0%
!! GTGCAGAAGGGTGTCGAAAA+TGG + Chr4:81400889-81400908 None:intergenic 50.0%
!! TTCTGGGACATAACGACTGG+AGG + Chr4:81402563-81402582 None:intergenic 50.0%
AGAGTGGAGTAGGGTGAGTG+AGG - Chr4:81404123-81404142 MsG0480023146.01.T01:intron 55.0%
AGATGGCGAGCATCCTCCAA+AGG + Chr4:81401105-81401124 None:intergenic 55.0%
AGCCAAACAGGGTGGTCAGA+AGG - Chr4:81403620-81403639 MsG0480023146.01.T01:intron 55.0%
AGGGTGAGTGAGGACCATGT+CGG - Chr4:81404133-81404152 MsG0480023146.01.T01:intron 55.0%
CTAGGAGACAAGCACGGGTT+AGG - Chr4:81402020-81402039 MsG0480023146.01.T01:intron 55.0%
CTCCTTCTGACCACCCTGTT+TGG + Chr4:81403625-81403644 None:intergenic 55.0%
CTGCATGACATGCATTGGGG+GGG - Chr4:81400600-81400619 MsG0480023146.01.T01:intron 55.0%
CTGGGACATAACGACTGGAG+GGG + Chr4:81402561-81402580 None:intergenic 55.0%
GATCAATGGCCCACCTTTGG+AGG - Chr4:81401089-81401108 MsG0480023146.01.T01:intron 55.0%
TCACTGTCACTGTACCGCCA+TGG - Chr4:81398021-81398040 MsG0480023146.01.T01:three_prime_UTR 55.0%
TGCATGACATGCATTGGGGG+GGG - Chr4:81400601-81400620 MsG0480023146.01.T01:intron 55.0%
TGCCAAACTGCATGCTGCAG+AGG - Chr4:81402066-81402085 MsG0480023146.01.T01:intron 55.0%
TGCCTCTGCAGCATGCAGTT+TGG + Chr4:81402071-81402090 None:intergenic 55.0%
TGCTGCAGAGGCAAAGATGC+AGG - Chr4:81402078-81402097 MsG0480023146.01.T01:intron 55.0%
! CGGTTCTGACGATGTGAGTG+AGG - Chr4:81403316-81403335 MsG0480023146.01.T01:intron 55.0%
! GGGGTGGTAGACCGTCTTTT+CGG + Chr4:81399093-81399112 None:intergenic 55.0%
! GTACCGCCATGGACGCTTTT+AGG - Chr4:81398032-81398051 MsG0480023146.01.T01:three_prime_UTR 55.0%
! GTGGTTTCCTTCTGGCTACG+TGG - Chr4:81403664-81403683 MsG0480023146.01.T01:intron 55.0%
ATGACATGCATTGGGGGGGG+GGG - Chr4:81400604-81400623 MsG0480023146.01.T01:intron 60.0%
CACAGGTGAGCCAAACAGGG+TGG - Chr4:81403612-81403631 MsG0480023146.01.T01:intron 60.0%
CATGACATGCATTGGGGGGG+GGG - Chr4:81400603-81400622 MsG0480023146.01.T01:intron 60.0%
GCATGACATGCATTGGGGGG+GGG - Chr4:81400602-81400621 MsG0480023146.01.T01:intron 60.0%
GGCGAGCATCCTCCAAAGGT+GGG + Chr4:81401101-81401120 None:intergenic 60.0%
GTGGCTGGTGCATCTCTTGC+AGG - Chr4:81403389-81403408 MsG0480023146.01.T01:intron 60.0%
TGGCGAGCATCCTCCAAAGG+TGG + Chr4:81401102-81401121 None:intergenic 60.0%
ATCTACCCTCCCGGCACGAG+TGG + Chr4:81398552-81398571 None:intergenic 65.0%
CTGTACAGGGCCACTCGTGC+CGG - Chr4:81398539-81398558 MsG0480023146.01.T01:CDS 65.0%
TGTACAGGGCCACTCGTGCC+GGG - Chr4:81398540-81398559 MsG0480023146.01.T01:CDS 65.0%
ACAGGGCCACTCGTGCCGGG+AGG - Chr4:81398543-81398562 MsG0480023146.01.T01:CDS 75.0%
CAGGGCCACTCGTGCCGGGA+GGG - Chr4:81398544-81398563 MsG0480023146.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 81397911 81404346 81397911 ID=MsG0480023146.01;Name=MsG0480023146.01
Chr4 mRNA 81397911 81404346 81397911 ID=MsG0480023146.01.T01;Parent=MsG0480023146.01;Name=MsG0480023146.01.T01;_AED=0.49;_eAED=0.49;_QI=129|1|1|1|1|1|10|610|348
Chr4 exon 81397911 81398640 81397911 ID=MsG0480023146.01.T01:exon:5570;Parent=MsG0480023146.01.T01
Chr4 exon 81398772 81398846 81398772 ID=MsG0480023146.01.T01:exon:5569;Parent=MsG0480023146.01.T01
Chr4 exon 81399641 81399730 81399641 ID=MsG0480023146.01.T01:exon:5568;Parent=MsG0480023146.01.T01
Chr4 exon 81399894 81399956 81399894 ID=MsG0480023146.01.T01:exon:5567;Parent=MsG0480023146.01.T01
Chr4 exon 81400053 81400250 81400053 ID=MsG0480023146.01.T01:exon:5566;Parent=MsG0480023146.01.T01
Chr4 exon 81401090 81401191 81401090 ID=MsG0480023146.01.T01:exon:5565;Parent=MsG0480023146.01.T01
Chr4 exon 81402315 81402460 81402315 ID=MsG0480023146.01.T01:exon:5564;Parent=MsG0480023146.01.T01
Chr4 exon 81402577 81402646 81402577 ID=MsG0480023146.01.T01:exon:5563;Parent=MsG0480023146.01.T01
Chr4 exon 81403692 81403814 81403692 ID=MsG0480023146.01.T01:exon:5562;Parent=MsG0480023146.01.T01
Chr4 exon 81404158 81404346 81404158 ID=MsG0480023146.01.T01:exon:5561;Parent=MsG0480023146.01.T01
Chr4 five_prime_UTR 81404218 81404346 81404218 ID=MsG0480023146.01.T01:five_prime_utr;Parent=MsG0480023146.01.T01
Chr4 CDS 81404158 81404217 81404158 ID=MsG0480023146.01.T01:cds;Parent=MsG0480023146.01.T01
Chr4 CDS 81403692 81403814 81403692 ID=MsG0480023146.01.T01:cds;Parent=MsG0480023146.01.T01
Chr4 CDS 81402577 81402646 81402577 ID=MsG0480023146.01.T01:cds;Parent=MsG0480023146.01.T01
Chr4 CDS 81402315 81402460 81402315 ID=MsG0480023146.01.T01:cds;Parent=MsG0480023146.01.T01
Chr4 CDS 81401090 81401191 81401090 ID=MsG0480023146.01.T01:cds;Parent=MsG0480023146.01.T01
Chr4 CDS 81400053 81400250 81400053 ID=MsG0480023146.01.T01:cds;Parent=MsG0480023146.01.T01
Chr4 CDS 81399894 81399956 81399894 ID=MsG0480023146.01.T01:cds;Parent=MsG0480023146.01.T01
Chr4 CDS 81399641 81399730 81399641 ID=MsG0480023146.01.T01:cds;Parent=MsG0480023146.01.T01
Chr4 CDS 81398772 81398846 81398772 ID=MsG0480023146.01.T01:cds;Parent=MsG0480023146.01.T01
Chr4 CDS 81398521 81398640 81398521 ID=MsG0480023146.01.T01:cds;Parent=MsG0480023146.01.T01
Chr4 three_prime_UTR 81397911 81398520 81397911 ID=MsG0480023146.01.T01:three_prime_utr;Parent=MsG0480023146.01.T01
Gene Sequence

>MsG0480023146.01.T01

ATGGACGCTTTTAGGAAACAAGCTAGCAAGCTCAGAGAGCAAGTTGTCAAACAACAACAGGCTGTAATAAAACAATTCAGCGGCAGCGGTTATGAGAGCTCAGATGTTGTGGTTATTGATGAAGTTGAAATGCAGAGACATCAACATATGGAGAAGCTGTACAGGGCCACTCGTGCCGGGAGGGACTTCCAAAAAGAAATTGTTAAAGCAGCAGAAACATTTACAGCTATATCTTATAAGCATATTGAAACAGGAACAAAACTTTCTGAGGAGTGCTGTAGATATGGAGCAGAGAACAACAGTGACAACATATTAGCTAAGGCCGCATCAGTATATGGCGATGCTCGCAAACATGTAGAAAAGGAGCACGAAGAATTGAATCGGCTTTTATCTTCCCAGGTTTTGGATCCTTTGAGACAAATGATCAATGGCCCACCTTTGGAGGATGCTCGCCATCTTGCTCAACGGTATAGTCGGATGAGACAAGAAGCAGAGACACATAAAGAGGAGATTTCTAGGAGACAAGCACGGGTTAGGGAATCTCAAACTGCTGAGCAGGTTGCCAAACTGCATGCTGCAGAGGCAAAGATGCAGGAGCTGAAAGCCAATATGGCAGTTCTAGGTAAAGAAGCTTCGGCTGCATTGGCTGCTGTTGATGCACAACAGCAAAGACTGACTTTTCAAAGGCTTGTTGCTATGGTGGAATCAGAGAAGACTTTTCATTCAAGAGTTGCAGCCATTTTTGGTGAAATTGAAACTGAGATTGTCTCCGACAGACAGAAGAAAGAATCGGCCCCTCCAGTCGTTATGTCCCAGAATGGCTCAGAGAAAACAATGTACTTCTTGGCTGAGGCAATGCATCCTTACGATGCTGAAACGGAAAAGGAACTTAGCTTTTCAAAGGGTGACTTTATTGTCGTGCGGAAGGTGAGCCAAACAGGGTGGTCAGAAGGAGAATGCAATGGTAAAGGAGGGTGGTTTCCTTCTGGCTACGTGGAAAAACGGCAGAGAATCCCATCTAGCAACATGGCTGGAGAAGTTTACTAG
Protein sequence

>MsG0480023146.01.T01

MDAFRKQASKLREQVVKQQQAVIKQFSGSGYESSDVVVIDEVEMQRHQHMEKLYRATRAGRDFQKEIVKAAETFTAISYKHIETGTKLSEECCRYGAENNSDNILAKAASVYGDARKHVEKEHEELNRLLSSQVLDPLRQMINGPPLEDARHLAQRYSRMRQEAETHKEEISRRQARVRESQTAEQVAKLHAAEAKMQELKANMAVLGKEASAALAAVDAQQQRLTFQRLVAMVESEKTFHSRVAAIFGEIETEIVSDRQKKESAPPVVMSQNGSEKTMYFLAEAMHPYDAETEKELSFSKGDFIVVRKVSQTGWSEGECNGKGGWFPSGYVEKRQRIPSSNMAGEVY*