AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039025.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039025.01.T01 MTR_7g066310 52.835 388 161 5 10 377 6 391 1.46e-127 373
MsG0780039025.01.T01 MTR_7g066260 67.194 253 76 3 127 375 219 468 1.50e-108 327
MsG0780039025.01.T01 MTR_7g066260 69.231 117 34 1 10 126 14 128 2.29e-48 171
MsG0780039025.01.T01 MTR_2g029400 44.019 418 141 8 10 359 13 405 1.27e-98 299
MsG0780039025.01.T01 MTR_7g066340 55.636 275 117 3 103 377 192 461 2.84e-91 283
MsG0780039025.01.T01 MTR_7g066340 61.667 120 44 1 10 127 11 130 6.12e-41 150
MsG0780039025.01.T01 MTR_7g066400 40.826 436 189 9 11 378 12 446 2.37e-88 274
MsG0780039025.01.T01 MTR_1g014060 43.717 382 189 8 20 375 9 390 1.05e-86 268
MsG0780039025.01.T01 MTR_7g066360 61.811 254 83 4 127 377 215 457 1.95e-85 268
MsG0780039025.01.T01 MTR_7g066360 61.789 123 44 1 1 120 1 123 3.06e-42 154
MsG0780039025.01.T01 MTR_7g066290 60.558 251 69 3 121 370 213 434 9.83e-83 259
MsG0780039025.01.T01 MTR_7g066290 63.478 115 40 1 10 124 14 126 3.84e-42 153
MsG0780039025.01.T01 MTR_7g063920 39.318 440 190 8 1 371 1 432 5.41e-81 255
MsG0780039025.01.T01 MTR_7g066350 54.753 263 109 5 106 365 190 445 3.96e-77 246
MsG0780039025.01.T01 MTR_7g066350 67.521 117 35 2 10 123 8 124 5.40e-43 156
MsG0780039025.01.T01 MTR_1g041315 54.580 262 105 6 102 353 194 451 2.49e-75 242
MsG0780039025.01.T01 MTR_1g041315 60.177 113 44 1 10 121 13 125 1.92e-36 139
MsG0780039025.01.T01 MTR_7g066280 47.945 292 98 5 136 377 111 398 1.28e-74 238
MsG0780039025.01.T01 MTR_7g066570 50.725 276 101 5 126 369 208 480 7.52e-71 232
MsG0780039025.01.T01 MTR_7g066570 66.667 117 36 2 10 125 13 127 1.09e-43 160
MsG0780039025.01.T01 MTR_7g066680 46.823 299 97 5 127 365 38 334 1.38e-70 225
MsG0780039025.01.T01 MTR_7g066580 48.421 285 107 5 126 372 166 448 1.13e-69 226
MsG0780039025.01.T01 MTR_7g066580 60.526 114 43 2 17 128 1 114 9.01e-37 139
MsG0780039025.01.T01 MTR_7g066580 35.537 121 72 2 11 130 215 330 1.74e-12 68.9
MsG0780039025.01.T01 MTR_7g058710 45.270 296 127 3 106 369 185 477 2.33e-63 210
MsG0780039025.01.T01 MTR_7g058710 61.600 125 33 3 4 127 5 115 1.58e-40 150
MsG0780039025.01.T01 MTR_7g012680 49.425 261 116 5 127 375 195 451 1.27e-62 207
MsG0780039025.01.T01 MTR_7g012680 70.690 116 32 1 10 125 13 126 2.53e-50 175
MsG0780039025.01.T01 MTR_7g066480 33.183 443 179 11 10 370 15 422 4.84e-55 187
MsG0780039025.01.T01 MTR_7g058700 47.737 243 81 3 127 369 725 921 1.47e-54 193
MsG0780039025.01.T01 MTR_7g058700 64.444 90 18 1 23 112 531 606 6.24e-27 113
MsG0780039025.01.T01 MTR_7g066430 39.344 305 146 6 102 369 183 485 5.04e-54 186
MsG0780039025.01.T01 MTR_7g066430 55.556 99 44 0 11 109 4 102 6.60e-31 123
MsG0780039025.01.T01 MTR_7g066390 56.875 160 39 1 218 377 1 130 1.89e-50 167
MsG0780039025.01.T01 MTR_7g062280 40.502 279 129 5 121 371 218 487 5.17e-48 170
MsG0780039025.01.T01 MTR_7g062280 50.413 121 59 1 2 121 1 121 3.99e-29 118
MsG0780039025.01.T01 MTR_7g062280 41.573 89 46 2 7 94 262 345 2.29e-12 68.6
MsG0780039025.01.T01 MTR_7g066410 38.516 283 137 4 127 372 233 515 6.18e-48 170
MsG0780039025.01.T01 MTR_7g066410 52.000 125 57 2 2 125 1 123 2.68e-36 139
MsG0780039025.01.T01 MTR_7g066490 31.776 428 189 10 11 370 16 408 7.82e-48 168
MsG0780039025.01.T01 MTR_3g007740 42.586 263 127 5 121 369 190 442 6.44e-46 163
MsG0780039025.01.T01 MTR_3g007740 48.673 113 43 3 9 119 7 106 6.47e-22 97.1
MsG0780039025.01.T01 MTR_3g007740 28.986 207 126 6 176 363 8 212 5.34e-12 67.4
MsG0780039025.01.T01 MTR_7g063720 42.130 216 114 3 167 371 13 228 1.80e-45 157
MsG0780039025.01.T01 MTR_7g063670 40.310 258 141 4 121 371 202 453 8.95e-45 160
MsG0780039025.01.T01 MTR_7g063670 44.954 109 47 2 12 119 16 112 1.80e-19 90.1
MsG0780039025.01.T01 MTR_7g062300 39.927 273 129 5 121 367 208 471 2.94e-44 159
MsG0780039025.01.T01 MTR_7g062300 50.427 117 57 1 4 119 5 121 6.45e-29 117
MsG0780039025.01.T01 MTR_7g062300 44.706 85 41 2 11 94 256 335 9.14e-13 69.7
MsG0780039025.01.T01 MTR_7g063820 38.790 281 132 5 121 369 206 478 2.83e-42 154
MsG0780039025.01.T01 MTR_7g063820 49.612 129 63 2 2 129 1 128 8.02e-29 117
MsG0780039025.01.T01 MTR_4g017470 27.586 464 226 8 12 370 13 471 1.38e-41 152
MsG0780039025.01.T01 MTR_4g017470 28.302 212 122 6 171 365 6 204 3.94e-12 67.8
MsG0780039025.01.T01 MTR_4g019310 37.234 282 124 8 127 369 223 490 7.41e-41 151
MsG0780039025.01.T01 MTR_4g019310 39.695 131 70 2 5 126 2 132 1.61e-23 102
MsG0780039025.01.T01 MTR_7g063660 35.943 281 142 4 121 371 201 473 8.32e-41 150
MsG0780039025.01.T01 MTR_7g063660 50.847 118 57 1 6 122 4 121 2.12e-31 124
MsG0780039025.01.T01 MTR_7g063660 29.412 221 126 7 172 363 4 223 2.66e-14 74.7
MsG0780039025.01.T01 MTR_7g063660 37.255 102 58 2 8 108 247 343 8.49e-12 67.0
MsG0780039025.01.T01 MTR_3g065200 31.731 416 204 14 11 356 3 408 1.38e-40 149
MsG0780039025.01.T01 MTR_7g063830 39.535 258 116 5 127 371 210 440 3.42e-40 148
MsG0780039025.01.T01 MTR_7g063830 44.186 129 68 2 2 129 1 126 2.01e-27 113
MsG0780039025.01.T01 MTR_7g063830 36.937 111 64 2 8 117 251 356 5.43e-11 64.3
MsG0780039025.01.T01 MTR_7g100420 32.266 406 197 11 3 369 31 397 4.49e-40 147
MsG0780039025.01.T01 MTR_7g063840 36.201 279 139 5 121 371 202 469 1.21e-39 147
MsG0780039025.01.T01 MTR_7g063840 52.336 107 50 1 7 112 5 111 2.87e-26 110
MsG0780039025.01.T01 MTR_7g063840 29.545 220 123 9 174 363 7 224 8.86e-13 69.7
MsG0780039025.01.T01 MTR_7g063900 38.542 288 129 7 121 369 204 482 2.89e-36 138
MsG0780039025.01.T01 MTR_7g063900 47.287 129 64 2 2 126 1 129 1.08e-28 117
MsG0780039025.01.T01 MTR_7g063900 27.679 224 128 9 171 363 6 226 1.06e-13 72.8
MsG0780039025.01.T01 MTR_7g063880 37.050 278 119 9 127 371 210 464 2.91e-35 135
MsG0780039025.01.T01 MTR_7g063880 45.806 155 75 3 1 148 1 153 2.34e-31 124
MsG0780039025.01.T01 MTR_7g063880 28.889 225 123 7 172 363 6 226 2.34e-12 68.6
MsG0780039025.01.T01 MTR_4g017830 30.225 311 163 7 120 385 213 514 4.23e-31 124
MsG0780039025.01.T01 MTR_4g017830 41.880 117 60 3 12 120 13 129 4.06e-19 89.4
MsG0780039025.01.T01 MTR_7g063890 37.847 288 131 6 121 369 220 498 1.00e-30 123
MsG0780039025.01.T01 MTR_7g063890 47.788 113 58 1 8 119 24 136 2.99e-26 110
MsG0780039025.01.T01 MTR_7g063890 29.752 242 134 9 156 363 3 242 1.11e-16 82.0
MsG0780039025.01.T01 MTR_7g063850 33.929 224 114 6 177 371 66 284 1.10e-26 108
MsG0780039025.01.T01 MTR_7g062270 46.032 126 65 2 2 124 1 126 1.94e-26 109
MsG0780039025.01.T01 MTR_4g019340 32.432 259 148 7 120 357 249 501 4.16e-26 109
MsG0780039025.01.T01 MTR_4g019340 45.133 113 51 1 12 113 39 151 1.46e-21 96.7
MsG0780039025.01.T01 MTR_4g017550 32.180 289 146 10 120 366 190 470 1.45e-25 108
MsG0780039025.01.T01 MTR_4g017550 46.753 77 34 2 41 110 21 97 2.35e-11 65.5
MsG0780039025.01.T01 MTR_4g017440 30.717 293 151 7 120 369 219 502 1.94e-25 107
MsG0780039025.01.T01 MTR_4g017440 42.982 114 53 3 12 113 15 128 1.04e-19 91.3
MsG0780039025.01.T01 MTR_4g017610 48.148 108 48 2 14 113 16 123 2.56e-23 101
MsG0780039025.01.T01 MTR_4g017610 29.091 275 151 7 120 365 216 475 2.65e-21 95.5
MsG0780039025.01.T01 MTR_4g017410 42.623 122 58 4 12 121 10 131 4.54e-22 98.2
MsG0780039025.01.T01 MTR_4g017410 29.520 271 166 8 120 369 218 484 6.85e-22 97.4
MsG0780039025.01.T01 MTR_4g019330 34.078 179 86 5 191 367 32 180 4.55e-18 82.0
MsG0780039025.01.T01 MTR_4g019240 38.129 139 73 5 12 142 14 147 1.74e-17 80.1
MsG0780039025.01.T01 MTR_7g063760 52.113 71 33 1 304 373 1 71 2.93e-17 76.3
MsG0780039025.01.T01 MTR_2g067310 61.290 62 24 0 22 83 58 119 6.10e-16 77.0
MsG0780039025.01.T01 MTR_8g023240 27.273 286 148 10 127 370 223 490 7.03e-14 73.6
MsG0780039025.01.T01 MTR_0150s0010 35.106 94 56 1 2 95 1 89 1.24e-12 67.4
MsG0780039025.01.T01 MTR_7g063690 64.583 48 17 0 12 59 13 60 1.43e-12 67.4
MsG0780039025.01.T01 MTR_1g115440 31.818 132 76 3 1 123 1 127 1.83e-12 67.0
MsG0780039025.01.T01 MTR_8g445860 29.134 127 79 3 8 129 10 130 1.41e-11 64.3
MsG0780039025.01.T01 MTR_7g063870 50.909 55 27 0 5 59 25 79 7.00e-11 62.8
MsG0780039025.01.T01 MTR_1g115450 32.955 88 54 1 8 95 4 86 8.70e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039025.01.T01 AT3G09110 43.636 110 61 1 13 121 11 120 1.77e-22 97.8
MsG0780039025.01.T01 AT3G09120 41.667 108 62 1 10 117 5 111 5.20e-21 93.2
MsG0780039025.01.T01 AT5G01150 40.179 112 66 1 13 123 11 122 1.00e-20 94.0
MsG0780039025.01.T01 AT5G01150 26.374 273 169 4 127 371 213 481 5.75e-16 79.7
MsG0780039025.01.T01 AT5G01120 39.806 103 62 0 12 114 10 112 1.26e-20 94.0
MsG0780039025.01.T01 AT5G01140 28.682 258 162 3 127 365 193 447 1.27e-20 93.6
MsG0780039025.01.T01 AT5G43240 39.450 109 65 1 12 119 10 118 1.66e-20 93.6
MsG0780039025.01.T01 AT5G43240 29.333 300 161 9 102 365 205 489 2.99e-15 77.8
MsG0780039025.01.T01 AT5G43240 39.450 109 65 1 12 119 10 118 1.66e-20 93.6
MsG0780039025.01.T01 AT5G43240 29.333 300 161 9 102 365 205 489 2.99e-15 77.8
MsG0780039025.01.T01 AT5G43240 39.450 109 65 1 12 119 10 118 1.66e-20 93.6
MsG0780039025.01.T01 AT5G43240 29.333 300 161 9 102 365 205 489 2.99e-15 77.8
MsG0780039025.01.T01 AT3G09140 41.176 119 68 2 2 119 1 118 2.52e-20 92.8
MsG0780039025.01.T01 AT3G09140 29.434 265 158 8 127 365 228 489 5.08e-16 80.1
MsG0780039025.01.T01 AT3G09140 41.176 119 68 2 2 119 1 118 3.13e-20 92.8
MsG0780039025.01.T01 AT3G09140 29.259 270 162 8 122 365 251 517 2.07e-17 84.3
MsG0780039025.01.T01 AT5G01130 38.053 113 70 0 11 123 9 121 4.29e-18 85.9
MsG0780039025.01.T01 AT5G01130 26.848 257 163 7 124 369 202 444 2.47e-15 77.8
MsG0780039025.01.T01 AT5G43240 29.333 300 161 9 102 365 61 345 4.30e-15 76.6
MsG0780039025.01.T01 AT5G37320 38.614 101 60 2 21 119 19 119 8.73e-15 76.3

Find 77 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTTCCTCAATGTCATTT+AGG 0.087241 7:+56956891 None:intergenic
TCTCGTCGTACATTATAATT+AGG 0.146621 7:-56956655 None:intergenic
GATCCCAAATCCCCTGTTTC+TGG 0.158108 7:-56957019 MsG0780039025.01.T01:CDS
AATATTGAAGCAATGAAATT+TGG 0.225545 7:-56958032 MsG0780039025.01.T01:CDS
GTTTCTTGACGTTCCCTTTA+GGG 0.234774 7:-56958085 MsG0780039025.01.T01:CDS
TCCTCCAGAAACAGGGGATT+TGG 0.246382 7:+56957015 None:intergenic
AGTTTCTTGACGTTCCCTTT+AGG 0.251679 7:-56958086 MsG0780039025.01.T01:CDS
CAAGACCTCGCCACGATCTT+TGG 0.255592 7:+56957051 None:intergenic
AATTTCCTCAATGTCATTTA+GGG 0.286648 7:+56956892 None:intergenic
GAGGAAATTGTCGTTAATAT+TGG 0.297073 7:-56956878 MsG0780039025.01.T01:CDS
CACAGGACCAACAATGATTA+TGG 0.322696 7:-56956987 MsG0780039025.01.T01:CDS
GTGACATATCCTCCAGAAAC+AGG 0.363395 7:+56957007 None:intergenic
CCTCCAGAAACAGGGGATTT+GGG 0.381514 7:+56957016 None:intergenic
TACCTTCCATGGAGTTCCTT+GGG 0.386851 7:+56957925 None:intergenic
CTCTTGATGGGAAATATCTA+TGG 0.395355 7:-56957977 MsG0780039025.01.T01:CDS
TCAACTAGAAACATTCTGTT+TGG 0.398374 7:-56957325 MsG0780039025.01.T01:CDS
GAAGAGGGTAAGATTGGTAT+TGG 0.419917 7:-56957406 MsG0780039025.01.T01:CDS
CAAAGTGTGCAAGCTCTTGA+TGG 0.425174 7:-56957990 MsG0780039025.01.T01:CDS
TCTGACCGTAAACATTTCTC+TGG 0.437901 7:+56957166 None:intergenic
GTCTTGAAATAGTCCCTAAA+GGG 0.438593 7:+56958072 None:intergenic
CTACCTTCCATGGAGTTCCT+TGG 0.438783 7:+56957924 None:intergenic
CCATCTGAAGAGGGTAAGAT+TGG 0.438944 7:-56957412 MsG0780039025.01.T01:CDS
CTCGTCGTACATTATAATTA+GGG 0.450301 7:-56956654 None:intergenic
ATGTTCTCACAGGAAAAGTA+TGG 0.450974 7:+56957861 None:intergenic
TGAGTCCAGAGAAATGTTTA+CGG 0.479473 7:-56957171 MsG0780039025.01.T01:CDS
TCTGTCACCATAATCATTGT+TGG 0.485135 7:+56956980 None:intergenic
GGTAAGATTGGTATTGGAAA+GGG 0.492219 7:-56957400 MsG0780039025.01.T01:CDS
TGAAGTTACATTGAAAGTTA+TGG 0.495205 7:-56958174 MsG0780039025.01.T01:CDS
AGTCTTGAAATAGTCCCTAA+AGG 0.498901 7:+56958071 None:intergenic
AAGCCCTCATCTGCATATGT+TGG 0.515996 7:+56957436 None:intergenic
TGGTTCCTTACTCCATATGT+AGG 0.516443 7:+56957106 None:intergenic
CTTCTGACAGCTACCTTCCA+TGG 0.519159 7:+56957914 None:intergenic
GGAGTGTTGCAAATGCTAGA+AGG 0.519900 7:-56957244 MsG0780039025.01.T01:CDS
GCAGATGCTGATAAAACTAC+TGG 0.526501 7:-56957356 MsG0780039025.01.T01:CDS
ACTCCAATGTCATCGTTTGA+TGG 0.532598 7:-56956944 MsG0780039025.01.T01:CDS
ACTCACCTAAGTAGTGTTTG+AGG 0.535054 7:+56956703 None:intergenic
AGGGACTATTTCAAGACTTG+TGG 0.535479 7:-56958066 MsG0780039025.01.T01:CDS
TGTCGTTAATATTGGAGTGA+AGG 0.536937 7:-56956870 MsG0780039025.01.T01:CDS
CGTTAATATTGGAGTGAAGG+AGG 0.542677 7:-56956867 MsG0780039025.01.T01:intron
CAGAGGAGTCTTCGAGAGCA+AGG 0.548998 7:+56957483 None:intergenic
TCGACATCTGCTTTGACTAA+CGG 0.558603 7:-56956726 MsG0780039025.01.T01:CDS
AAAGTGTGCAAGCTCTTGAT+GGG 0.562300 7:-56957989 MsG0780039025.01.T01:CDS
GGGTAAGATTGGTATTGGAA+AGG 0.563253 7:-56957401 MsG0780039025.01.T01:CDS
TTCATATCTAGAAAGAATGA+AGG 0.581383 7:-56956918 MsG0780039025.01.T01:CDS
TCTGTATGCTGATGTAGAGA+AGG 0.582063 7:-56958129 MsG0780039025.01.T01:CDS
TGGGAAATATCTATGGTCAC+AGG 0.588806 7:-56957970 MsG0780039025.01.T01:CDS
CCAATCTTACCCTCTTCAGA+TGG 0.593770 7:+56957412 None:intergenic
GTTTCTGGAGGATATGTCAC+AGG 0.594537 7:-56957004 MsG0780039025.01.T01:CDS
GAAACCAACATATGCAGATG+AGG 0.595214 7:-56957440 MsG0780039025.01.T01:CDS
TGAGGGCTTACCATCTGAAG+AGG 0.596168 7:-56957422 MsG0780039025.01.T01:CDS
AACGGCCTCAAACACTACTT+AGG 0.596286 7:-56956708 MsG0780039025.01.T01:CDS
CCCAAATCCCCTGTTTCTGG+AGG 0.597019 7:-56957016 MsG0780039025.01.T01:CDS
GATTATGGTGACAGACGACT+TGG 0.599153 7:-56956972 MsG0780039025.01.T01:CDS
ATCTGCTTACCCTCTTCAGA+TGG 0.600894 7:+56957373 None:intergenic
TGACATATCCTCCAGAAACA+GGG 0.601751 7:+56957008 None:intergenic
AACTGAACATCGATGACACA+CGG 0.601788 7:-56957887 MsG0780039025.01.T01:CDS
AACAAATGCTACTCTACCCA+AGG 0.609557 7:-56957941 MsG0780039025.01.T01:CDS
TTTAAGATAAAGTCTGTCAG+AGG 0.610371 7:+56957466 None:intergenic
TTTCCTGTGAGAACATGTGT+TGG 0.610958 7:-56957854 MsG0780039025.01.T01:CDS
ACACCATCAAACGATGACAT+TGG 0.611312 7:+56956941 None:intergenic
AAAGGGCTTACCATCTGAAG+AGG 0.612181 7:-56957383 MsG0780039025.01.T01:CDS
ACTCTACCCAAGGAACTCCA+TGG 0.618847 7:-56957931 MsG0780039025.01.T01:CDS
TTTCCTCAATGTCATTTAGG+GGG 0.620430 7:+56956894 None:intergenic
GTTCCAACACATGTTCTCAC+AGG 0.622047 7:+56957851 None:intergenic
AGTTACATTGAAAGTTATGG+TGG 0.626014 7:-56958171 MsG0780039025.01.T01:CDS
ATTTCCTCAATGTCATTTAG+GGG 0.628156 7:+56956893 None:intergenic
CATTCTGTTTGGCATAGCAG+AGG 0.632699 7:-56957314 MsG0780039025.01.T01:CDS
AAACCAACATATGCAGATGA+GGG 0.635875 7:-56957439 MsG0780039025.01.T01:CDS
TACCCAAGGAACTCCATGGA+AGG 0.636437 7:-56957927 MsG0780039025.01.T01:CDS
GTGTTTACTTCCAAAGATCG+TGG 0.640288 7:-56957061 MsG0780039025.01.T01:CDS
ACTGAACATCGATGACACAC+GGG 0.644937 7:-56957886 MsG0780039025.01.T01:CDS
TACTTCCAAAGATCGTGGCG+AGG 0.654719 7:-56957056 MsG0780039025.01.T01:CDS
AAGGGCTTACCATCTGAAGA+GGG 0.666261 7:-56957382 MsG0780039025.01.T01:CDS
GAGGGCTTACCATCTGAAGA+GGG 0.666261 7:-56957421 MsG0780039025.01.T01:CDS
GACATATCCTCCAGAAACAG+GGG 0.675682 7:+56957009 None:intergenic
ATTTGCAACACTCCTCCTAG+AGG 0.676162 7:+56957253 None:intergenic
GTTAGTCAAAGCAGATGTCG+AGG 0.681782 7:+56956728 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATCAAGAATTATAAAAC+TGG + Chr7:56957137-56957156 None:intergenic 15.0%
!!! AATTTCTATATTTTTATCAC+TGG - Chr7:56957291-56957310 MsG0780039025.01.T01:CDS 15.0%
!! AATATTGAAGCAATGAAATT+TGG - Chr7:56956827-56956846 MsG0780039025.01.T01:intron 20.0%
! AATGATCTAATAAAAGGTCT+AGG - Chr7:56957172-56957191 MsG0780039025.01.T01:CDS 25.0%
! ATATCTATGTTTATATGTGC+AGG - Chr7:56957332-56957351 MsG0780039025.01.T01:CDS 25.0%
! ATGCCTAATGATCTAATAAA+AGG - Chr7:56957166-56957185 MsG0780039025.01.T01:CDS 25.0%
! TGAAGTTACATTGAAAGTTA+TGG - Chr7:56956685-56956704 MsG0780039025.01.T01:CDS 25.0%
! TTCATATCTAGAAAGAATGA+AGG - Chr7:56957941-56957960 MsG0780039025.01.T01:CDS 25.0%
!! AATTTCCTCAATGTCATTTA+GGG + Chr7:56957970-56957989 None:intergenic 25.0%
!! AGACCTTTTATTAGATCATT+AGG + Chr7:56957172-56957191 None:intergenic 25.0%
!! ATAATTTGTATCTTTGGTGA+TGG - Chr7:56958075-56958094 MsG0780039025.01.T01:CDS 25.0%
!! GATTGCATAATTTGTATCTT+TGG - Chr7:56958069-56958088 MsG0780039025.01.T01:CDS 25.0%
AGTTACATTGAAAGTTATGG+TGG - Chr7:56956688-56956707 MsG0780039025.01.T01:CDS 30.0%
CCATATGTAGGAAAAATTTG+AGG + Chr7:56957744-56957763 None:intergenic 30.0%
GAAAAAACTACTTATCAGCA+AGG - Chr7:56957240-56957259 MsG0780039025.01.T01:CDS 30.0%
GAGGAAATTGTCGTTAATAT+TGG - Chr7:56957981-56958000 MsG0780039025.01.T01:CDS 30.0%
TCAACTAGAAACATTCTGTT+TGG - Chr7:56957534-56957553 MsG0780039025.01.T01:intron 30.0%
! ATTTCCTCAATGTCATTTAG+GGG + Chr7:56957969-56957988 None:intergenic 30.0%
! CAATTTCCTCAATGTCATTT+AGG + Chr7:56957971-56957990 None:intergenic 30.0%
! CCTCAAATTTTTCCTACATA+TGG - Chr7:56957741-56957760 MsG0780039025.01.T01:intron 30.0%
! TTTAAGATAAAGTCTGTCAG+AGG + Chr7:56957396-56957415 None:intergenic 30.0%
! TTTTTCCTACATATGGAGTA+AGG - Chr7:56957748-56957767 MsG0780039025.01.T01:intron 30.0%
!! ACGACGAGATTTTGATAATT+TGG + Chr7:56958193-56958212 None:intergenic 30.0%
!!! CTGTTTTGATTGGTAAAATC+TGG + Chr7:56957776-56957795 None:intergenic 30.0%
AAAACTACTTATCAGCAAGG+AGG - Chr7:56957243-56957262 MsG0780039025.01.T01:CDS 35.0%
AAACCAACATATGCAGATGA+GGG - Chr7:56957420-56957439 MsG0780039025.01.T01:CDS 35.0%
AGAAAACAGAAATGCCATTG+TGG - Chr7:56957046-56957065 MsG0780039025.01.T01:CDS 35.0%
AGTCTTGAAATAGTCCCTAA+AGG + Chr7:56956791-56956810 None:intergenic 35.0%
ATGTTCTCACAGGAAAAGTA+TGG + Chr7:56957001-56957020 None:intergenic 35.0%
CTCTTGATGGGAAATATCTA+TGG - Chr7:56956882-56956901 MsG0780039025.01.T01:CDS 35.0%
CTTAACAAAGCCATTGTCAA+AGG + Chr7:56957107-56957126 None:intergenic 35.0%
GTCTTGAAATAGTCCCTAAA+GGG + Chr7:56956790-56956809 None:intergenic 35.0%
TCTGTCACCATAATCATTGT+TGG + Chr7:56957882-56957901 None:intergenic 35.0%
TGAGTCCAGAGAAATGTTTA+CGG - Chr7:56957688-56957707 MsG0780039025.01.T01:intron 35.0%
TGTCGTTAATATTGGAGTGA+AGG - Chr7:56957989-56958008 MsG0780039025.01.T01:CDS 35.0%
! ATGTAGGAAAAATTTGAGGC+TGG + Chr7:56957740-56957759 None:intergenic 35.0%
! GGTAAGATTGGTATTGGAAA+GGG - Chr7:56957459-56957478 MsG0780039025.01.T01:CDS 35.0%
! TGTAGAGAAGGATTTTGTTG+AGG - Chr7:56956742-56956761 MsG0780039025.01.T01:CDS 35.0%
! TTTCCTCAATGTCATTTAGG+GGG + Chr7:56957968-56957987 None:intergenic 35.0%
!! AGTTTTCTCACTTTTCCTCT+AGG - Chr7:56957591-56957610 MsG0780039025.01.T01:intron 35.0%
!! CTTTGACAATGGCTTTGTTA+AGG - Chr7:56957105-56957124 MsG0780039025.01.T01:CDS 35.0%
!!! GTAAACACAGCTGTTTTGAT+TGG + Chr7:56957786-56957805 None:intergenic 35.0%
AAAGCCATTGTCAAAGGAAC+TGG + Chr7:56957101-56957120 None:intergenic 40.0%
AAAGTGTGCAAGCTCTTGAT+GGG - Chr7:56956870-56956889 MsG0780039025.01.T01:CDS 40.0%
AACAAATGCTACTCTACCCA+AGG - Chr7:56956918-56956937 MsG0780039025.01.T01:CDS 40.0%
AACAGAAATGCCATTGTGGA+AGG - Chr7:56957050-56957069 MsG0780039025.01.T01:CDS 40.0%
AACTGAACATCGATGACACA+CGG - Chr7:56956972-56956991 MsG0780039025.01.T01:CDS 40.0%
AAGCCATTGTCAAAGGAACT+GGG + Chr7:56957100-56957119 None:intergenic 40.0%
ACACCATCAAACGATGACAT+TGG + Chr7:56957921-56957940 None:intergenic 40.0%
ACTCACCTAAGTAGTGTTTG+AGG + Chr7:56958159-56958178 None:intergenic 40.0%
ACTCCAATGTCATCGTTTGA+TGG - Chr7:56957915-56957934 MsG0780039025.01.T01:CDS 40.0%
AGGGACTATTTCAAGACTTG+TGG - Chr7:56956793-56956812 MsG0780039025.01.T01:intron 40.0%
AGTTTCTTGACGTTCCCTTT+AGG - Chr7:56956773-56956792 MsG0780039025.01.T01:intron 40.0%
ATGACATTGCAGATATCGAG+AGG - Chr7:56957218-56957237 MsG0780039025.01.T01:CDS 40.0%
ATTGGAGTGAAGGAGGTAAA+GGG - Chr7:56957999-56958018 MsG0780039025.01.T01:CDS 40.0%
CACAGGACCAACAATGATTA+TGG - Chr7:56957872-56957891 MsG0780039025.01.T01:CDS 40.0%
CGTTAATATTGGAGTGAAGG+AGG - Chr7:56957992-56958011 MsG0780039025.01.T01:CDS 40.0%
GAAACCAACATATGCAGATG+AGG - Chr7:56957419-56957438 MsG0780039025.01.T01:CDS 40.0%
GAAGAGGGTAAGATTGGTAT+TGG - Chr7:56957453-56957472 MsG0780039025.01.T01:CDS 40.0%
GCAGATGCTGATAAAACTAC+TGG - Chr7:56957503-56957522 MsG0780039025.01.T01:CDS 40.0%
GTGTTTACTTCCAAAGATCG+TGG - Chr7:56957798-56957817 MsG0780039025.01.T01:intron 40.0%
GTTTCTTGACGTTCCCTTTA+GGG - Chr7:56956774-56956793 MsG0780039025.01.T01:intron 40.0%
TATTGGAGTGAAGGAGGTAA+AGG - Chr7:56957998-56958017 MsG0780039025.01.T01:CDS 40.0%
TCGACATCTGCTTTGACTAA+CGG - Chr7:56958133-56958152 MsG0780039025.01.T01:CDS 40.0%
TCTGACCGTAAACATTTCTC+TGG + Chr7:56957696-56957715 None:intergenic 40.0%
TCTGTATGCTGATGTAGAGA+AGG - Chr7:56956730-56956749 MsG0780039025.01.T01:CDS 40.0%
TGACATATCCTCCAGAAACA+GGG + Chr7:56957854-56957873 None:intergenic 40.0%
TGGGAAATATCTATGGTCAC+AGG - Chr7:56956889-56956908 MsG0780039025.01.T01:CDS 40.0%
TGGTTCCTTACTCCATATGT+AGG + Chr7:56957756-56957775 None:intergenic 40.0%
TTTCCTGTGAGAACATGTGT+TGG - Chr7:56957005-56957024 MsG0780039025.01.T01:CDS 40.0%
! CATAGCAGAGGAAGATTTTG+CGG - Chr7:56957557-56957576 MsG0780039025.01.T01:intron 40.0%
! GGGTAAGATTGGTATTGGAA+AGG - Chr7:56957458-56957477 MsG0780039025.01.T01:CDS 40.0%
!! TTTCTCACTTTTCCTCTAGG+AGG - Chr7:56957594-56957613 MsG0780039025.01.T01:intron 40.0%
AAAGGGCTTACCATCTGAAG+AGG - Chr7:56957476-56957495 MsG0780039025.01.T01:CDS 45.0%
AACGGCCTCAAACACTACTT+AGG - Chr7:56958151-56958170 MsG0780039025.01.T01:CDS 45.0%
AAGCCCTCATCTGCATATGT+TGG + Chr7:56957426-56957445 None:intergenic 45.0%
AAGGGCTTACCATCTGAAGA+GGG - Chr7:56957477-56957496 MsG0780039025.01.T01:CDS 45.0%
ACTACTTATCAGCAAGGAGG+AGG - Chr7:56957246-56957265 MsG0780039025.01.T01:CDS 45.0%
ACTGAACATCGATGACACAC+GGG - Chr7:56956973-56956992 MsG0780039025.01.T01:CDS 45.0%
AGGTCTAGGTTTCCTACAGA+TGG - Chr7:56957186-56957205 MsG0780039025.01.T01:CDS 45.0%
ATCTGCTTACCCTCTTCAGA+TGG + Chr7:56957489-56957508 None:intergenic 45.0%
ATTGTCAAAGGAACTGGGAC+AGG + Chr7:56957095-56957114 None:intergenic 45.0%
ATTTGCAACACTCCTCCTAG+AGG + Chr7:56957609-56957628 None:intergenic 45.0%
CAAAGTGTGCAAGCTCTTGA+TGG - Chr7:56956869-56956888 MsG0780039025.01.T01:CDS 45.0%
CATTCTGTTTGGCATAGCAG+AGG - Chr7:56957545-56957564 MsG0780039025.01.T01:intron 45.0%
CCAATCTTACCCTCTTCAGA+TGG + Chr7:56957450-56957469 None:intergenic 45.0%
CCATCTGAAGAGGGTAAGAT+TGG - Chr7:56957447-56957466 MsG0780039025.01.T01:CDS 45.0%
CGTTACAACACCTTCCACAA+TGG + Chr7:56957063-56957082 None:intergenic 45.0%
CTAGGTTTCCTACAGATGGA+CGG - Chr7:56957190-56957209 MsG0780039025.01.T01:CDS 45.0%
GACATATCCTCCAGAAACAG+GGG + Chr7:56957853-56957872 None:intergenic 45.0%
GATTATGGTGACAGACGACT+TGG - Chr7:56957887-56957906 MsG0780039025.01.T01:CDS 45.0%
GTGACATATCCTCCAGAAAC+AGG + Chr7:56957855-56957874 None:intergenic 45.0%
GTTAGTCAAAGCAGATGTCG+AGG + Chr7:56958134-56958153 None:intergenic 45.0%
GTTCCAACACATGTTCTCAC+AGG + Chr7:56957011-56957030 None:intergenic 45.0%
TACCTTCCATGGAGTTCCTT+GGG + Chr7:56956937-56956956 None:intergenic 45.0%
TGTCCCAGTTCCTTTGACAA+TGG - Chr7:56957094-56957113 MsG0780039025.01.T01:CDS 45.0%
! GTTTCTGGAGGATATGTCAC+AGG - Chr7:56957855-56957874 MsG0780039025.01.T01:CDS 45.0%
!! CATTGATTCCGTCCATCTGT+AGG + Chr7:56957201-56957220 None:intergenic 45.0%
!! GGAGTGTTGCAAATGCTAGA+AGG - Chr7:56957615-56957634 MsG0780039025.01.T01:intron 45.0%
!! GTATCTTTGGTGATGGTGCA+GGG - Chr7:56958082-56958101 MsG0780039025.01.T01:CDS 45.0%
!! TGTATCTTTGGTGATGGTGC+AGG - Chr7:56958081-56958100 MsG0780039025.01.T01:CDS 45.0%
ACTCTACCCAAGGAACTCCA+TGG - Chr7:56956928-56956947 MsG0780039025.01.T01:CDS 50.0%
CCTCCAGAAACAGGGGATTT+GGG + Chr7:56957846-56957865 None:intergenic 50.0%
CTACCTTCCATGGAGTTCCT+TGG + Chr7:56956938-56956957 None:intergenic 50.0%
CTTCTGACAGCTACCTTCCA+TGG + Chr7:56956948-56956967 None:intergenic 50.0%
GAGGGCTTACCATCTGAAGA+GGG - Chr7:56957438-56957457 MsG0780039025.01.T01:CDS 50.0%
GATCCCAAATCCCCTGTTTC+TGG - Chr7:56957840-56957859 MsG0780039025.01.T01:intron 50.0%
GGTCCCCCTAAATGACATTG+AGG - Chr7:56957962-56957981 MsG0780039025.01.T01:CDS 50.0%
TACCCAAGGAACTCCATGGA+AGG - Chr7:56956932-56956951 MsG0780039025.01.T01:CDS 50.0%
TACTTCCAAAGATCGTGGCG+AGG - Chr7:56957803-56957822 MsG0780039025.01.T01:intron 50.0%
TCCTCCAGAAACAGGGGATT+TGG + Chr7:56957847-56957866 None:intergenic 50.0%
TGAGGGCTTACCATCTGAAG+AGG - Chr7:56957437-56957456 MsG0780039025.01.T01:CDS 50.0%
! AGGAGGAGGCATGATTTCTC+TGG - Chr7:56957260-56957279 MsG0780039025.01.T01:CDS 50.0%
CAAGACCTCGCCACGATCTT+TGG + Chr7:56957811-56957830 None:intergenic 55.0%
CAGAGGAGTCTTCGAGAGCA+AGG + Chr7:56957379-56957398 None:intergenic 55.0%
!! CCCAAATCCCCTGTTTCTGG+AGG - Chr7:56957843-56957862 MsG0780039025.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 56956656 56958225 56956656 ID=MsG0780039025.01;Name=MsG0780039025.01
Chr7 mRNA 56956656 56958225 56956656 ID=MsG0780039025.01.T01;Parent=MsG0780039025.01;Name=MsG0780039025.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|386
Chr7 exon 56957848 56958225 56957848 ID=MsG0780039025.01.T01:exon:8202;Parent=MsG0780039025.01.T01
Chr7 exon 56956868 56957527 56956868 ID=MsG0780039025.01.T01:exon:8201;Parent=MsG0780039025.01.T01
Chr7 exon 56956656 56956778 56956656 ID=MsG0780039025.01.T01:exon:8200;Parent=MsG0780039025.01.T01
Chr7 CDS 56957848 56958225 56957848 ID=MsG0780039025.01.T01:cds;Parent=MsG0780039025.01.T01
Chr7 CDS 56956868 56957527 56956868 ID=MsG0780039025.01.T01:cds;Parent=MsG0780039025.01.T01
Chr7 CDS 56956656 56956778 56956656 ID=MsG0780039025.01.T01:cds;Parent=MsG0780039025.01.T01
Gene Sequence

>MsG0780039025.01.T01

ATGGTTGGCACTACAACTAAATCAGATGATGAAGTTACATTGAAAGTTATGGTGGACAGAGAAAGAAACAAAGTTCTGTATGCTGATGTAGAGAAGGATTTTGTTGAGGTTCTTTTGAGTTTCTTGACGTTCCCTTTAGGGACTATTTCAAGACTTGTGGCTAAAGAATCAAATATTGAAGCAATGAAATTTGGCAGCATTAGCTCGCTTTATCAAAGTGTGCAAGCTCTTGATGGGAAATATCTATGGTCACAGGAATGCAAACAAATGCTACTCTACCCAAGGAACTCCATGGAAGGTAGCTGTCAGAAGCTCAAACTGAACATCGATGACACACGGGTGCCATACTTTTCCTGTGAGAACATGTGTTGGAACTCTGTAGTCGATCTTCTCAAGTTGTCCTTGCTCTCGAAGACTCCTCTGACAGACTTTATCTTAAAGAAGAAACCAACATATGCAGATGAGGGCTTACCATCTGAAGAGGGTAAGATTGGTATTGGAAAGGGCTTACCATCTGAAGAGGGTAAGCAGATGCTGATAAAACTACTGGTTAGAAAATCAACTAGAAACATTCTGTTTGGCATAGCAGAGGAAGATTTTGCGGACTTTCTTTTCAGTTTTCTCACTTTTCCTCTAGGAGGAGTGTTGCAAATGCTAGAAGGATTCTCTTCTTTAAGCTGCATTGATATTTTATATAAAAGCATGACTGAGTTGAGTCCAGAGAAATGTTTACGGTCAGATGAACTTAAAAACAAACTTAGCCAGCCTCAAATTTTTCCTACATATGGAGTAAGGAACCAGATTTTACCAATCAAAACAGCTGTGTTTACTTCCAAAGATCGTGGCGAGGTCTTGAAATTTGTTGATCCCAAATCCCCTGTTTCTGGAGGATATGTCACAGGACCAACAATGATTATGGTGACAGACGACTTGGTTGTGACTCCAATGTCATCGTTTGATGGTGTTTCATATCTAGAAAGAATGAAGGTCCCCCTAAATGACATTGAGGAAATTGTCGTTAATATTGGAGTGAAGGAGGGTCTCAACATACTAAAAGCTTCATTGACCTCGACATCTGCTTTGACTAACGGCCTCAAACACTACTTAGGTGAGTTCAATATTCAACCAAATTATCAAAATCTCGTCGTACATTATAATTAG
Protein sequence

>MsG0780039025.01.T01

MVGTTTKSDDEVTLKVMVDRERNKVLYADVEKDFVEVLLSFLTFPLGTISRLVAKESNIEAMKFGSISSLYQSVQALDGKYLWSQECKQMLLYPRNSMEGSCQKLKLNIDDTRVPYFSCENMCWNSVVDLLKLSLLSKTPLTDFILKKKPTYADEGLPSEEGKIGIGKGLPSEEGKQMLIKLLVRKSTRNILFGIAEEDFADFLFSFLTFPLGGVLQMLEGFSSLSCIDILYKSMTELSPEKCLRSDELKNKLSQPQIFPTYGVRNQILPIKTAVFTSKDRGEVLKFVDPKSPVSGGYVTGPTMIMVTDDLVVTPMSSFDGVSYLERMKVPLNDIEEIVVNIGVKEGLNILKASLTSTSALTNGLKHYLGEFNIQPNYQNLVVHYN*