Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039073.01.T01 | XP_013449072.1 | 83.968 | 499 | 79 | 1 | 1 | 499 | 1 | 498 | 0 | 853 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039073.01.T01 | A0A072TZZ5 | 83.968 | 499 | 79 | 1 | 1 | 499 | 1 | 498 | 0.0 | 853 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039073.01.T01 | MTR_7g066430 | 83.968 | 499 | 79 | 1 | 1 | 499 | 1 | 498 | 0.0 | 853 |
| MsG0780039073.01.T01 | MTR_7g066410 | 51.683 | 505 | 220 | 5 | 4 | 486 | 10 | 512 | 1.21e-170 | 491 |
| MsG0780039073.01.T01 | MTR_7g066570 | 47.782 | 496 | 228 | 10 | 5 | 492 | 15 | 487 | 2.17e-138 | 411 |
| MsG0780039073.01.T01 | MTR_7g012680 | 44.376 | 489 | 220 | 10 | 4 | 491 | 14 | 451 | 1.16e-122 | 367 |
| MsG0780039073.01.T01 | MTR_7g058710 | 41.414 | 495 | 249 | 10 | 4 | 486 | 12 | 477 | 5.64e-122 | 366 |
| MsG0780039073.01.T01 | MTR_7g066260 | 42.828 | 488 | 234 | 10 | 4 | 486 | 15 | 462 | 2.51e-116 | 352 |
| MsG0780039073.01.T01 | MTR_7g066260 | 27.155 | 232 | 155 | 5 | 255 | 480 | 12 | 235 | 8.52e-16 | 80.5 |
| MsG0780039073.01.T01 | MTR_7g066340 | 41.752 | 491 | 229 | 13 | 4 | 486 | 12 | 453 | 9.70e-110 | 335 |
| MsG0780039073.01.T01 | MTR_1g041315 | 40.748 | 481 | 228 | 11 | 4 | 470 | 14 | 451 | 4.64e-108 | 331 |
| MsG0780039073.01.T01 | MTR_7g066580 | 40.361 | 498 | 233 | 12 | 10 | 493 | 1 | 448 | 5.94e-108 | 329 |
| MsG0780039073.01.T01 | MTR_7g066350 | 41.529 | 484 | 233 | 11 | 4 | 483 | 9 | 446 | 3.38e-107 | 327 |
| MsG0780039073.01.T01 | MTR_7g062280 | 39.881 | 504 | 254 | 9 | 4 | 486 | 10 | 485 | 1.29e-104 | 322 |
| MsG0780039073.01.T01 | MTR_7g066290 | 39.592 | 490 | 218 | 9 | 4 | 486 | 15 | 433 | 1.35e-99 | 307 |
| MsG0780039073.01.T01 | MTR_7g062300 | 38.809 | 487 | 263 | 8 | 4 | 483 | 12 | 470 | 2.66e-99 | 307 |
| MsG0780039073.01.T01 | MTR_7g063660 | 38.037 | 489 | 271 | 7 | 4 | 486 | 9 | 471 | 1.16e-97 | 303 |
| MsG0780039073.01.T01 | MTR_7g066400 | 37.755 | 490 | 230 | 11 | 2 | 482 | 10 | 433 | 1.14e-95 | 297 |
| MsG0780039073.01.T01 | MTR_7g066360 | 39.024 | 492 | 245 | 11 | 2 | 489 | 12 | 452 | 1.24e-95 | 298 |
| MsG0780039073.01.T01 | MTR_7g063900 | 40.530 | 491 | 266 | 9 | 4 | 486 | 10 | 482 | 1.73e-95 | 298 |
| MsG0780039073.01.T01 | MTR_7g063880 | 37.782 | 487 | 264 | 11 | 4 | 486 | 11 | 462 | 6.31e-91 | 286 |
| MsG0780039073.01.T01 | MTR_7g058700 | 38.277 | 499 | 191 | 11 | 16 | 499 | 531 | 927 | 4.29e-89 | 293 |
| MsG0780039073.01.T01 | MTR_7g063820 | 38.008 | 492 | 282 | 9 | 5 | 491 | 11 | 484 | 8.18e-89 | 281 |
| MsG0780039073.01.T01 | MTR_7g063840 | 37.014 | 489 | 269 | 12 | 5 | 486 | 11 | 467 | 1.31e-88 | 280 |
| MsG0780039073.01.T01 | MTR_7g063840 | 26.971 | 241 | 144 | 11 | 252 | 480 | 4 | 224 | 2.47e-12 | 69.3 |
| MsG0780039073.01.T01 | MTR_7g066480 | 48.844 | 346 | 145 | 9 | 4 | 336 | 16 | 342 | 4.37e-88 | 277 |
| MsG0780039073.01.T01 | MTR_7g066480 | 62.651 | 83 | 31 | 0 | 412 | 494 | 347 | 429 | 1.67e-24 | 106 |
| MsG0780039073.01.T01 | MTR_7g063830 | 37.959 | 490 | 244 | 12 | 5 | 491 | 11 | 443 | 3.16e-85 | 270 |
| MsG0780039073.01.T01 | MTR_3g007740 | 37.577 | 487 | 247 | 12 | 4 | 486 | 9 | 442 | 8.89e-85 | 269 |
| MsG0780039073.01.T01 | MTR_2g029400 | 37.131 | 474 | 213 | 10 | 4 | 475 | 14 | 404 | 1.63e-84 | 267 |
| MsG0780039073.01.T01 | MTR_7g066490 | 46.588 | 337 | 154 | 7 | 3 | 336 | 15 | 328 | 2.10e-84 | 267 |
| MsG0780039073.01.T01 | MTR_7g066490 | 61.446 | 83 | 32 | 0 | 412 | 494 | 333 | 415 | 1.20e-23 | 103 |
| MsG0780039073.01.T01 | MTR_4g019310 | 37.022 | 497 | 277 | 13 | 4 | 482 | 8 | 486 | 1.22e-82 | 265 |
| MsG0780039073.01.T01 | MTR_7g063920 | 35.404 | 483 | 249 | 5 | 4 | 486 | 11 | 430 | 4.70e-82 | 262 |
| MsG0780039073.01.T01 | MTR_7g063890 | 38.677 | 499 | 263 | 12 | 4 | 486 | 27 | 498 | 1.23e-77 | 252 |
| MsG0780039073.01.T01 | MTR_7g063890 | 28.261 | 230 | 146 | 6 | 257 | 480 | 26 | 242 | 1.82e-18 | 88.6 |
| MsG0780039073.01.T01 | MTR_7g063670 | 38.086 | 491 | 240 | 10 | 5 | 486 | 16 | 451 | 2.22e-76 | 248 |
| MsG0780039073.01.T01 | MTR_3g065200 | 33.970 | 471 | 245 | 12 | 3 | 472 | 2 | 407 | 2.23e-74 | 243 |
| MsG0780039073.01.T01 | MTR_4g019340 | 34.008 | 494 | 271 | 12 | 5 | 474 | 39 | 501 | 5.30e-66 | 222 |
| MsG0780039073.01.T01 | MTR_4g017830 | 33.661 | 508 | 296 | 15 | 5 | 488 | 13 | 503 | 3.07e-65 | 220 |
| MsG0780039073.01.T01 | MTR_4g017830 | 27.386 | 241 | 151 | 6 | 255 | 482 | 9 | 238 | 1.50e-13 | 73.6 |
| MsG0780039073.01.T01 | MTR_4g017440 | 31.827 | 509 | 303 | 14 | 5 | 488 | 15 | 504 | 9.18e-65 | 218 |
| MsG0780039073.01.T01 | MTR_7g066680 | 42.208 | 308 | 135 | 6 | 208 | 482 | 37 | 334 | 9.51e-62 | 206 |
| MsG0780039073.01.T01 | MTR_4g017610 | 32.600 | 500 | 275 | 18 | 7 | 483 | 16 | 476 | 1.09e-61 | 209 |
| MsG0780039073.01.T01 | MTR_4g017610 | 27.823 | 248 | 147 | 5 | 253 | 482 | 8 | 241 | 1.29e-15 | 79.7 |
| MsG0780039073.01.T01 | MTR_4g017410 | 31.298 | 524 | 304 | 16 | 1 | 496 | 1 | 496 | 1.57e-59 | 204 |
| MsG0780039073.01.T01 | MTR_4g017470 | 30.695 | 518 | 285 | 11 | 5 | 496 | 13 | 482 | 2.57e-53 | 187 |
| MsG0780039073.01.T01 | MTR_7g066280 | 32.558 | 430 | 224 | 14 | 83 | 486 | 1 | 390 | 3.65e-53 | 185 |
| MsG0780039073.01.T01 | MTR_4g017550 | 32.049 | 493 | 281 | 18 | 18 | 482 | 3 | 469 | 1.03e-50 | 180 |
| MsG0780039073.01.T01 | MTR_1g014060 | 43.128 | 211 | 116 | 3 | 13 | 223 | 9 | 215 | 1.27e-50 | 178 |
| MsG0780039073.01.T01 | MTR_1g014060 | 42.439 | 205 | 93 | 4 | 288 | 491 | 210 | 390 | 5.79e-36 | 138 |
| MsG0780039073.01.T01 | MTR_1g014060 | 28.302 | 212 | 133 | 7 | 267 | 471 | 9 | 208 | 5.27e-15 | 77.4 |
| MsG0780039073.01.T01 | MTR_7g066310 | 38.976 | 254 | 104 | 4 | 246 | 486 | 168 | 383 | 1.12e-45 | 165 |
| MsG0780039073.01.T01 | MTR_7g066310 | 46.809 | 141 | 73 | 2 | 4 | 143 | 7 | 146 | 1.04e-34 | 135 |
| MsG0780039073.01.T01 | MTR_7g063720 | 38.528 | 231 | 101 | 4 | 261 | 483 | 26 | 223 | 1.12e-39 | 144 |
| MsG0780039073.01.T01 | MTR_7g063720 | 28.261 | 230 | 129 | 7 | 2 | 225 | 21 | 220 | 2.35e-16 | 79.0 |
| MsG0780039073.01.T01 | MTR_7g100420 | 36.474 | 329 | 175 | 8 | 159 | 482 | 94 | 393 | 1.33e-38 | 145 |
| MsG0780039073.01.T01 | MTR_7g063850 | 34.926 | 272 | 148 | 9 | 238 | 504 | 46 | 293 | 1.30e-35 | 134 |
| MsG0780039073.01.T01 | MTR_7g062270 | 40.116 | 172 | 99 | 1 | 5 | 176 | 11 | 178 | 3.40e-35 | 135 |
| MsG0780039073.01.T01 | MTR_8g023240 | 26.775 | 493 | 293 | 18 | 5 | 478 | 38 | 481 | 4.78e-30 | 124 |
| MsG0780039073.01.T01 | MTR_8g445860 | 30.901 | 233 | 136 | 7 | 258 | 479 | 13 | 231 | 5.74e-20 | 89.4 |
| MsG0780039073.01.T01 | MTR_8g445860 | 28.395 | 243 | 149 | 7 | 2 | 233 | 11 | 239 | 9.46e-17 | 80.1 |
| MsG0780039073.01.T01 | MTR_7g066390 | 52.055 | 73 | 35 | 0 | 414 | 486 | 50 | 122 | 1.85e-17 | 80.1 |
| MsG0780039073.01.T01 | MTR_7g063690 | 37.086 | 151 | 86 | 3 | 135 | 285 | 81 | 222 | 3.28e-17 | 81.6 |
| MsG0780039073.01.T01 | MTR_7g063690 | 62.500 | 48 | 18 | 0 | 5 | 52 | 13 | 60 | 1.20e-11 | 65.1 |
| MsG0780039073.01.T01 | MTR_4g019240 | 44.330 | 97 | 46 | 2 | 5 | 93 | 14 | 110 | 4.51e-16 | 76.6 |
| MsG0780039073.01.T01 | MTR_1g115440 | 29.046 | 241 | 144 | 8 | 4 | 230 | 11 | 238 | 2.14e-14 | 73.2 |
| MsG0780039073.01.T01 | MTR_0150s0010 | 26.721 | 247 | 142 | 6 | 4 | 230 | 10 | 237 | 3.81e-14 | 72.4 |
| MsG0780039073.01.T01 | MTR_1g115455 | 27.668 | 253 | 137 | 9 | 2 | 233 | 7 | 234 | 3.14e-13 | 69.7 |
| MsG0780039073.01.T01 | MTR_2g067310 | 31.447 | 159 | 66 | 4 | 15 | 173 | 58 | 173 | 5.54e-13 | 69.3 |
| MsG0780039073.01.T01 | MTR_7g063760 | 52.239 | 67 | 31 | 1 | 421 | 486 | 1 | 67 | 1.39e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039073.01.T01 | AT5G01140 | 31.976 | 491 | 278 | 14 | 4 | 486 | 9 | 451 | 7.59e-61 | 207 |
| MsG0780039073.01.T01 | AT5G01120 | 32.731 | 498 | 293 | 12 | 5 | 482 | 10 | 485 | 4.12e-59 | 204 |
| MsG0780039073.01.T01 | AT5G43240 | 30.785 | 497 | 308 | 11 | 5 | 482 | 10 | 489 | 1.51e-58 | 202 |
| MsG0780039073.01.T01 | AT5G43240 | 30.785 | 497 | 308 | 11 | 5 | 482 | 10 | 489 | 1.51e-58 | 202 |
| MsG0780039073.01.T01 | AT5G43240 | 30.785 | 497 | 308 | 11 | 5 | 482 | 10 | 489 | 1.51e-58 | 202 |
| MsG0780039073.01.T01 | AT5G01150 | 30.426 | 516 | 321 | 11 | 4 | 505 | 9 | 500 | 1.15e-57 | 199 |
| MsG0780039073.01.T01 | AT5G01150 | 25.564 | 266 | 165 | 8 | 254 | 499 | 5 | 257 | 9.22e-11 | 64.7 |
| MsG0780039073.01.T01 | AT3G09140 | 30.268 | 522 | 306 | 13 | 2 | 492 | 7 | 501 | 1.68e-57 | 199 |
| MsG0780039073.01.T01 | AT3G09140 | 24.583 | 240 | 166 | 6 | 255 | 480 | 6 | 244 | 2.33e-11 | 66.6 |
| MsG0780039073.01.T01 | AT3G09140 | 28.962 | 549 | 306 | 13 | 2 | 492 | 7 | 529 | 5.55e-55 | 193 |
| MsG0780039073.01.T01 | AT3G09110 | 34.828 | 290 | 181 | 5 | 4 | 292 | 9 | 291 | 3.99e-49 | 172 |
| MsG0780039073.01.T01 | AT3G09120 | 34.891 | 321 | 188 | 9 | 2 | 312 | 4 | 313 | 1.24e-48 | 170 |
| MsG0780039073.01.T01 | AT3G09120 | 24.786 | 234 | 161 | 4 | 255 | 480 | 3 | 229 | 1.86e-12 | 68.9 |
| MsG0780039073.01.T01 | AT5G01130 | 30.000 | 490 | 274 | 15 | 4 | 482 | 9 | 440 | 1.09e-46 | 169 |
| MsG0780039073.01.T01 | AT5G37320 | 28.876 | 516 | 301 | 12 | 3 | 491 | 8 | 484 | 2.96e-44 | 163 |
| MsG0780039073.01.T01 | AT5G43240 | 27.381 | 336 | 213 | 9 | 160 | 482 | 28 | 345 | 8.90e-21 | 94.4 |
Find 78 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCGAAGAGCAACAATTT+TGG | 0.215689 | 7:+57510842 | MsG0780039073.01.T01:CDS |
| AACTCTCTCGAAGTAATATA+TGG | 0.304601 | 7:-57512003 | None:intergenic |
| TGGGATTCCTTCTTCCGATT+TGG | 0.309886 | 7:+57512191 | MsG0780039073.01.T01:CDS |
| CTTACTTTCTCAATGTTAGA+TGG | 0.325555 | 7:-57510781 | None:intergenic |
| CGGGGTAGAACACATGTTAA+AGG | 0.337480 | 7:+57511738 | MsG0780039073.01.T01:CDS |
| CAAATTTAAAATGCAGTTGC+GGG | 0.349657 | 7:+57511028 | MsG0780039073.01.T01:CDS |
| TTGAATTGGTAGGCAAGTTT+AGG | 0.350023 | 7:-57511865 | None:intergenic |
| ACTGCCCAACCCTGTTGTAT+TGG | 0.353634 | 7:+57511567 | MsG0780039073.01.T01:CDS |
| CCATGCACATTTAACTGCTT+TGG | 0.356014 | 7:+57511975 | MsG0780039073.01.T01:CDS |
| TTGTCAAAATCCAATACAAC+AGG | 0.360905 | 7:-57511577 | None:intergenic |
| TCGTCTTCTGCTCTGACTAA+TGG | 0.361646 | 7:+57512380 | MsG0780039073.01.T01:CDS |
| CTAGTGACACAAAATATATT+AGG | 0.371958 | 7:-57511928 | None:intergenic |
| ATACAAGAGCATCCTTGAAT+TGG | 0.380895 | 7:+57511792 | MsG0780039073.01.T01:CDS |
| AACATTGAGAAAGTAAGCTT+TGG | 0.387986 | 7:+57510787 | MsG0780039073.01.T01:CDS |
| TTCAAGTGCAAGAAGATTCA+TGG | 0.391251 | 7:-57511190 | None:intergenic |
| TTCCTTACATTTCCCTTTGG+CGG | 0.397577 | 7:+57511718 | MsG0780039073.01.T01:CDS |
| TTCTGATTTAAAAGATAAGC+TGG | 0.410605 | 7:+57511837 | MsG0780039073.01.T01:CDS |
| TCAACTTTGACTTTAAGAAA+TGG | 0.411254 | 7:-57512410 | None:intergenic |
| TCCTTACATTTCCCTTTGGC+GGG | 0.414757 | 7:+57511719 | MsG0780039073.01.T01:CDS |
| AAATTGTTGCTCTTCGAGAT+TGG | 0.414853 | 7:-57510839 | None:intergenic |
| TGAGACACTTCTCAAAGTTA+AGG | 0.415167 | 7:+57512430 | MsG0780039073.01.T01:CDS |
| CAAAGGGCAACAACTGGTTA+TGG | 0.417245 | 7:-57511891 | None:intergenic |
| TTTGTGTCACTAGACATAAT+AGG | 0.420484 | 7:+57511938 | MsG0780039073.01.T01:CDS |
| ACTGGTTATGGAGTTTGAAT+TGG | 0.433564 | 7:-57511879 | None:intergenic |
| TCTGCTCTGACTAATGGTCT+TGG | 0.434350 | 7:+57512386 | MsG0780039073.01.T01:CDS |
| CAAAGGTGTGTTTGAGACTA+AGG | 0.434805 | 7:-57511503 | None:intergenic |
| TCAAGGAGGCAAAGATTTCA+TGG | 0.435034 | 7:+57510699 | MsG0780039073.01.T01:CDS |
| AGTTTCCTTACATTTCCCTT+TGG | 0.447369 | 7:+57511715 | MsG0780039073.01.T01:CDS |
| TAAGGATGAGCTCAAAGTTA+AGG | 0.447408 | 7:+57512448 | MsG0780039073.01.T01:CDS |
| CTTTCCTCCAAATCGGAAGA+AGG | 0.453157 | 7:-57512198 | None:intergenic |
| GATTCCTTCTTCCGATTTGG+AGG | 0.454490 | 7:+57512194 | MsG0780039073.01.T01:CDS |
| ATGTGTCACTGTCCAATTCA+AGG | 0.455231 | 7:-57511804 | None:intergenic |
| GATCATTCTTTCCTCCAAAT+CGG | 0.457025 | 7:-57512205 | None:intergenic |
| AAGCCTAGCAATTGTAGCTA+AGG | 0.458301 | 7:-57510749 | None:intergenic |
| TTGGAGCCACAGTCATCAAA+TGG | 0.468782 | 7:+57512045 | MsG0780039073.01.T01:CDS |
| AGACATAATAGGAGAAGAAC+TGG | 0.475136 | 7:+57511949 | MsG0780039073.01.T01:CDS |
| TTTCATCAAAGGGCAACAAC+TGG | 0.478419 | 7:-57511897 | None:intergenic |
| ACACAAAATATATTAGGATC+AGG | 0.478516 | 7:-57511922 | None:intergenic |
| AAATCCAATACAACAGGGTT+GGG | 0.479589 | 7:-57511571 | None:intergenic |
| GAGGAAAGAATGATCACCAT+TGG | 0.483156 | 7:+57512213 | MsG0780039073.01.T01:CDS |
| GGATCAGGCATTTCATCAAA+GGG | 0.495430 | 7:-57511907 | None:intergenic |
| AGGATCAGGCATTTCATCAA+AGG | 0.497099 | 7:-57511908 | None:intergenic |
| GTAACAAGAGTATCAGTTTG+AGG | 0.511310 | 7:-57512480 | None:intergenic |
| ATGTGTTCTACCCCGCCAAA+GGG | 0.515374 | 7:-57511730 | None:intergenic |
| AAAATCCAATACAACAGGGT+TGG | 0.520441 | 7:-57511572 | None:intergenic |
| GGGGTAGAACACATGTTAAA+GGG | 0.522936 | 7:+57511739 | MsG0780039073.01.T01:CDS |
| TCAAATTTAAAATGCAGTTG+CGG | 0.524990 | 7:+57511027 | MsG0780039073.01.T01:CDS |
| TCAAGTGCAAGAAGATTCAT+GGG | 0.529660 | 7:-57511189 | None:intergenic |
| TTCCCTTAGCTACAATTGCT+AGG | 0.535607 | 7:+57510746 | MsG0780039073.01.T01:CDS |
| TCAGTCACCATGTAAAATGC+TGG | 0.536470 | 7:-57512111 | None:intergenic |
| TTACATGGTGACTGATGACT+TGG | 0.536780 | 7:+57512119 | MsG0780039073.01.T01:CDS |
| CAGAGCAGAAGACGACATCA+AGG | 0.539091 | 7:-57512372 | None:intergenic |
| TATGGTGATTGTGGTGGAAG+AGG | 0.543911 | 7:+57512075 | MsG0780039073.01.T01:CDS |
| TGCTTACAAGTTTATGAGCG+TGG | 0.546472 | 7:+57511221 | MsG0780039073.01.T01:CDS |
| AAAGCATAACATCGATGTCT+CGG | 0.547614 | 7:+57510930 | MsG0780039073.01.T01:CDS |
| TCATCAAATGGCGAAGCGTA+TGG | 0.553248 | 7:+57512057 | MsG0780039073.01.T01:CDS |
| CCCCGCCAAAGGGAAATGTA+AGG | 0.553475 | 7:-57511720 | None:intergenic |
| CCAAAGCAGTTAAATGTGCA+TGG | 0.559218 | 7:-57511975 | None:intergenic |
| AGCCTAGCAATTGTAGCTAA+GGG | 0.571248 | 7:-57510748 | None:intergenic |
| CATGTGTTCTACCCCGCCAA+AGG | 0.608297 | 7:-57511731 | None:intergenic |
| CCTTACATTTCCCTTTGGCG+GGG | 0.610689 | 7:+57511720 | MsG0780039073.01.T01:CDS |
| ATGACAGAAACAGAGGTACA+TGG | 0.613741 | 7:-57512150 | None:intergenic |
| AGTGGTCAACAATCCACCAC+TGG | 0.619436 | 7:-57511001 | None:intergenic |
| GTTATGGAGTTTGAATTGGT+AGG | 0.621781 | 7:-57511875 | None:intergenic |
| GGCGAAGCGTATGGTGATTG+TGG | 0.623203 | 7:+57512066 | MsG0780039073.01.T01:CDS |
| AATACTGTCAATGAAAACGA+AGG | 0.627418 | 7:+57511601 | MsG0780039073.01.T01:CDS |
| AATTCTCAGTGAAATTTGTG+TGG | 0.632684 | 7:-57510641 | None:intergenic |
| TAGCACGCTGTATGAAAGTG+TGG | 0.633787 | 7:+57510816 | MsG0780039073.01.T01:CDS |
| ATACTGTCAATGAAAACGAA+GGG | 0.638947 | 7:+57511602 | MsG0780039073.01.T01:CDS |
| ATGTTAAAGGGAAACTCATG+TGG | 0.642490 | 7:+57511751 | MsG0780039073.01.T01:CDS |
| GCTTCGCCATTTGATGACTG+TGG | 0.659915 | 7:-57512051 | None:intergenic |
| TGTAGTCGTCAATCCAGTGG+TGG | 0.663241 | 7:+57510988 | MsG0780039073.01.T01:CDS |
| GATTGTAGTCGTCAATCCAG+TGG | 0.678128 | 7:+57510985 | MsG0780039073.01.T01:CDS |
| GCATAACATCGATGTCTCGG+AGG | 0.684769 | 7:+57510933 | MsG0780039073.01.T01:CDS |
| AAATGAAATGACAGAAACAG+AGG | 0.690630 | 7:-57512157 | None:intergenic |
| TGTCAAAATCCAATACAACA+GGG | 0.693439 | 7:-57511576 | None:intergenic |
| GAAGCGTATGGTGATTGTGG+TGG | 0.710145 | 7:+57512069 | MsG0780039073.01.T01:CDS |
| CGTGGATGTCACTTTCAACG+AGG | 0.734846 | 7:+57511239 | MsG0780039073.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACAAAATATTTATAACA+TGG | - | Chr7:57511289-57511308 | None:intergenic | 10.0% |
| !!! | AAAGAAAAAATTGATAATGA+AGG | + | Chr7:57511084-57511103 | MsG0780039073.01.T01:CDS | 15.0% |
| !!! | ATTAAATACTAGTACATTTT+TGG | + | Chr7:57511365-57511384 | MsG0780039073.01.T01:intron | 15.0% |
| !! | AGGGAAGAAAATAAAAATAA+AGG | + | Chr7:57511621-57511640 | MsG0780039073.01.T01:CDS | 20.0% |
| !!! | AATAAAGTTTTATTTGCTCA+AGG | + | Chr7:57510682-57510701 | MsG0780039073.01.T01:CDS | 20.0% |
| !!! | TATTCTTCCATTGAATTTTT+TGG | - | Chr7:57510898-57510917 | None:intergenic | 20.0% |
| !!! | TATTTGTATTTTGTAGATAC+TGG | + | Chr7:57511465-57511484 | MsG0780039073.01.T01:intron | 20.0% |
| !!! | TGCAAATAAAATTTTGTTGT+TGG | - | Chr7:57511662-57511681 | None:intergenic | 20.0% |
| !!! | TTTGGATTTTTTTTTTTGCA+GGG | + | Chr7:57512329-57512348 | MsG0780039073.01.T01:intron | 20.0% |
| ! | ACACAAAATATATTAGGATC+AGG | - | Chr7:57511925-57511944 | None:intergenic | 25.0% |
| ! | CTAGTGACACAAAATATATT+AGG | - | Chr7:57511931-57511950 | None:intergenic | 25.0% |
| ! | CTGCAAAAAAAAAAATCCAA+AGG | - | Chr7:57512330-57512349 | None:intergenic | 25.0% |
| ! | TCTTCAACCAAAAAATTCAA+TGG | + | Chr7:57510888-57510907 | MsG0780039073.01.T01:CDS | 25.0% |
| ! | TTCTGATTTAAAAGATAAGC+TGG | + | Chr7:57511837-57511856 | MsG0780039073.01.T01:CDS | 25.0% |
| !! | GCATTTTAAATTTGAGAAAG+TGG | - | Chr7:57511022-57511041 | None:intergenic | 25.0% |
| !! | TCAAATTTAAAATGCAGTTG+CGG | + | Chr7:57511027-57511046 | MsG0780039073.01.T01:CDS | 25.0% |
| !! | TCAACTTTGACTTTAAGAAA+TGG | - | Chr7:57512413-57512432 | None:intergenic | 25.0% |
| !!! | ATTGGTTCATTTTATTCCTT+TGG | + | Chr7:57512311-57512330 | MsG0780039073.01.T01:intron | 25.0% |
| !!! | ATTTCATTTTTGAGTAAGCT+TGG | + | Chr7:57512171-57512190 | MsG0780039073.01.T01:CDS | 25.0% |
| !!! | CGATGTTATGCTTTAATTTT+TGG | - | Chr7:57510924-57510943 | None:intergenic | 25.0% |
| !!! | CTTTGGATTTTTTTTTTTGC+AGG | + | Chr7:57512328-57512347 | MsG0780039073.01.T01:intron | 25.0% |
| !!! | TTTCATTTTTGAGTAAGCTT+GGG | + | Chr7:57512172-57512191 | MsG0780039073.01.T01:CDS | 25.0% |
| AAATGAAATGACAGAAACAG+AGG | - | Chr7:57512160-57512179 | None:intergenic | 30.0% | |
| AACATTGAGAAAGTAAGCTT+TGG | + | Chr7:57510787-57510806 | MsG0780039073.01.T01:CDS | 30.0% | |
| AACTCTCTCGAAGTAATATA+TGG | - | Chr7:57512006-57512025 | None:intergenic | 30.0% | |
| AACTTCATTACACAACACAT+TGG | + | Chr7:57512293-57512312 | MsG0780039073.01.T01:intron | 30.0% | |
| AATACTGTCAATGAAAACGA+AGG | + | Chr7:57511601-57511620 | MsG0780039073.01.T01:CDS | 30.0% | |
| AATGATCACCATTGGAAAAA+AGG | + | Chr7:57512221-57512240 | MsG0780039073.01.T01:CDS | 30.0% | |
| AATTCTCAGTGAAATTTGTG+TGG | - | Chr7:57510644-57510663 | None:intergenic | 30.0% | |
| AGCAAAAAAATGTCTGTCAA+AGG | - | Chr7:57511523-57511542 | None:intergenic | 30.0% | |
| ATACTGTCAATGAAAACGAA+GGG | + | Chr7:57511602-57511621 | MsG0780039073.01.T01:CDS | 30.0% | |
| CTTACTTTCTCAATGTTAGA+TGG | - | Chr7:57510784-57510803 | None:intergenic | 30.0% | |
| TGTCAAAATCCAATACAACA+GGG | - | Chr7:57511579-57511598 | None:intergenic | 30.0% | |
| TTGTCAAAATCCAATACAAC+AGG | - | Chr7:57511580-57511599 | None:intergenic | 30.0% | |
| ! | AGTTTTTAATATGCGACGAT+TGG | + | Chr7:57510962-57510981 | MsG0780039073.01.T01:CDS | 30.0% |
| ! | ATGTGTTCCATTGAAGTTTT+TGG | + | Chr7:57512026-57512045 | MsG0780039073.01.T01:CDS | 30.0% |
| ! | CAAATTTAAAATGCAGTTGC+GGG | + | Chr7:57511028-57511047 | MsG0780039073.01.T01:CDS | 30.0% |
| ! | GTTTTTAATATGCGACGATT+GGG | + | Chr7:57510963-57510982 | MsG0780039073.01.T01:CDS | 30.0% |
| ! | TGCAGCAACTTTTTGTATTT+CGG | + | Chr7:57511119-57511138 | MsG0780039073.01.T01:CDS | 30.0% |
| ! | TTTGTGTCACTAGACATAAT+AGG | + | Chr7:57511938-57511957 | MsG0780039073.01.T01:CDS | 30.0% |
| !!! | AAAGTTTTATTTGCTCAAGG+AGG | + | Chr7:57510685-57510704 | MsG0780039073.01.T01:CDS | 30.0% |
| !!! | TTTTTTTTTTTGCAGGGTCT+TGG | + | Chr7:57512335-57512354 | MsG0780039073.01.T01:intron | 30.0% |
| AAAATCCAATACAACAGGGT+TGG | - | Chr7:57511575-57511594 | None:intergenic | 35.0% | |
| AAAGCATAACATCGATGTCT+CGG | + | Chr7:57510930-57510949 | MsG0780039073.01.T01:CDS | 35.0% | |
| AAATCCAATACAACAGGGTT+GGG | - | Chr7:57511574-57511593 | None:intergenic | 35.0% | |
| AAATTGTTGCTCTTCGAGAT+TGG | - | Chr7:57510842-57510861 | None:intergenic | 35.0% | |
| ACTGGTTATGGAGTTTGAAT+TGG | - | Chr7:57511882-57511901 | None:intergenic | 35.0% | |
| AGACATAATAGGAGAAGAAC+TGG | + | Chr7:57511949-57511968 | MsG0780039073.01.T01:CDS | 35.0% | |
| AGTTTCCTTACATTTCCCTT+TGG | + | Chr7:57511715-57511734 | MsG0780039073.01.T01:CDS | 35.0% | |
| ATGTTAAAGGGAAACTCATG+TGG | + | Chr7:57511751-57511770 | MsG0780039073.01.T01:CDS | 35.0% | |
| GATCATTCTTTCCTCCAAAT+CGG | - | Chr7:57512208-57512227 | None:intergenic | 35.0% | |
| GTTATGGAGTTTGAATTGGT+AGG | - | Chr7:57511878-57511897 | None:intergenic | 35.0% | |
| TAAGGATGAGCTCAAAGTTA+AGG | + | Chr7:57512448-57512467 | MsG0780039073.01.T01:CDS | 35.0% | |
| TCAAGTGCAAGAAGATTCAT+GGG | - | Chr7:57511192-57511211 | None:intergenic | 35.0% | |
| TGAGACACTTCTCAAAGTTA+AGG | + | Chr7:57512430-57512449 | MsG0780039073.01.T01:CDS | 35.0% | |
| TTCAAGTGCAAGAAGATTCA+TGG | - | Chr7:57511193-57511212 | None:intergenic | 35.0% | |
| TTGAATTGGTAGGCAAGTTT+AGG | - | Chr7:57511868-57511887 | None:intergenic | 35.0% | |
| ! | ATCTCGAAGAGCAACAATTT+TGG | + | Chr7:57510842-57510861 | MsG0780039073.01.T01:CDS | 35.0% |
| ! | GACAAGATCGTTTCTTTTGT+TGG | + | Chr7:57511326-57511345 | MsG0780039073.01.T01:intron | 35.0% |
| !! | ATACAAGAGCATCCTTGAAT+TGG | + | Chr7:57511792-57511811 | MsG0780039073.01.T01:CDS | 35.0% |
| !!! | CTTTACCTCCTTTTTTCCAA+TGG | - | Chr7:57512232-57512251 | None:intergenic | 35.0% |
| AAGCCTAGCAATTGTAGCTA+AGG | - | Chr7:57510752-57510771 | None:intergenic | 40.0% | |
| AGCCTAGCAATTGTAGCTAA+GGG | - | Chr7:57510751-57510770 | None:intergenic | 40.0% | |
| AGGATCAGGCATTTCATCAA+AGG | - | Chr7:57511911-57511930 | None:intergenic | 40.0% | |
| CCAAAGCAGTTAAATGTGCA+TGG | - | Chr7:57511978-57511997 | None:intergenic | 40.0% | |
| CCATGCACATTTAACTGCTT+TGG | + | Chr7:57511975-57511994 | MsG0780039073.01.T01:CDS | 40.0% | |
| GAGGAAAGAATGATCACCAT+TGG | + | Chr7:57512213-57512232 | MsG0780039073.01.T01:CDS | 40.0% | |
| GATCACCATTGGAAAAAAGG+AGG | + | Chr7:57512224-57512243 | MsG0780039073.01.T01:CDS | 40.0% | |
| GGATCAGGCATTTCATCAAA+GGG | - | Chr7:57511910-57511929 | None:intergenic | 40.0% | |
| GGGGTAGAACACATGTTAAA+GGG | + | Chr7:57511739-57511758 | MsG0780039073.01.T01:CDS | 40.0% | |
| TCAAGGAGGCAAAGATTTCA+TGG | + | Chr7:57510699-57510718 | MsG0780039073.01.T01:CDS | 40.0% | |
| TCAGTCACCATGTAAAATGC+TGG | - | Chr7:57512114-57512133 | None:intergenic | 40.0% | |
| TGCTTACAAGTTTATGAGCG+TGG | + | Chr7:57511221-57511240 | MsG0780039073.01.T01:CDS | 40.0% | |
| TGTGGCTCCAAAAACTTCAA+TGG | - | Chr7:57512036-57512055 | None:intergenic | 40.0% | |
| TTACATGGTGACTGATGACT+TGG | + | Chr7:57512119-57512138 | MsG0780039073.01.T01:CDS | 40.0% | |
| TTCCCTTAGCTACAATTGCT+AGG | + | Chr7:57510746-57510765 | MsG0780039073.01.T01:CDS | 40.0% | |
| TTCCTTACATTTCCCTTTGG+CGG | + | Chr7:57511718-57511737 | MsG0780039073.01.T01:CDS | 40.0% | |
| TTTCATCAAAGGGCAACAAC+TGG | - | Chr7:57511900-57511919 | None:intergenic | 40.0% | |
| ! | ATGACAGAAACAGAGGTACA+TGG | - | Chr7:57512153-57512172 | None:intergenic | 40.0% |
| ! | ATGTGTCACTGTCCAATTCA+AGG | - | Chr7:57511807-57511826 | None:intergenic | 40.0% |
| ! | CAAAGGTGTGTTTGAGACTA+AGG | - | Chr7:57511506-57511525 | None:intergenic | 40.0% |
| ! | GAAGAGTCCAGCATTTTACA+TGG | + | Chr7:57512104-57512123 | MsG0780039073.01.T01:CDS | 40.0% |
| !!! | AGAAGCATTTTCTTACACGC+AGG | - | Chr7:57510871-57510890 | None:intergenic | 40.0% |
| CAAAGGGCAACAACTGGTTA+TGG | - | Chr7:57511894-57511913 | None:intergenic | 45.0% | |
| CGGGGTAGAACACATGTTAA+AGG | + | Chr7:57511738-57511757 | MsG0780039073.01.T01:CDS | 45.0% | |
| CTTTCCTCCAAATCGGAAGA+AGG | - | Chr7:57512201-57512220 | None:intergenic | 45.0% | |
| GATTGTAGTCGTCAATCCAG+TGG | + | Chr7:57510985-57511004 | MsG0780039073.01.T01:CDS | 45.0% | |
| TAGCACGCTGTATGAAAGTG+TGG | + | Chr7:57510816-57510835 | MsG0780039073.01.T01:CDS | 45.0% | |
| TCATCAAATGGCGAAGCGTA+TGG | + | Chr7:57512057-57512076 | MsG0780039073.01.T01:CDS | 45.0% | |
| TCCTTACATTTCCCTTTGGC+GGG | + | Chr7:57511719-57511738 | MsG0780039073.01.T01:CDS | 45.0% | |
| TCGTCTTCTGCTCTGACTAA+TGG | + | Chr7:57512380-57512399 | MsG0780039073.01.T01:CDS | 45.0% | |
| TCTGCTCTGACTAATGGTCT+TGG | + | Chr7:57512386-57512405 | MsG0780039073.01.T01:CDS | 45.0% | |
| TGGGATTCCTTCTTCCGATT+TGG | + | Chr7:57512191-57512210 | MsG0780039073.01.T01:CDS | 45.0% | |
| TTGGAGCCACAGTCATCAAA+TGG | + | Chr7:57512045-57512064 | MsG0780039073.01.T01:CDS | 45.0% | |
| ! | TATGGTGATTGTGGTGGAAG+AGG | + | Chr7:57512075-57512094 | MsG0780039073.01.T01:CDS | 45.0% |
| !! | GATTCCTTCTTCCGATTTGG+AGG | + | Chr7:57512194-57512213 | MsG0780039073.01.T01:CDS | 45.0% |
| ACTGCCCAACCCTGTTGTAT+TGG | + | Chr7:57511567-57511586 | MsG0780039073.01.T01:CDS | 50.0% | |
| AGTGGTCAACAATCCACCAC+TGG | - | Chr7:57511004-57511023 | None:intergenic | 50.0% | |
| ATGTGTTCTACCCCGCCAAA+GGG | - | Chr7:57511733-57511752 | None:intergenic | 50.0% | |
| CAGAGCAGAAGACGACATCA+AGG | - | Chr7:57512375-57512394 | None:intergenic | 50.0% | |
| CCTTACATTTCCCTTTGGCG+GGG | + | Chr7:57511720-57511739 | MsG0780039073.01.T01:CDS | 50.0% | |
| GAAGCGTATGGTGATTGTGG+TGG | + | Chr7:57512069-57512088 | MsG0780039073.01.T01:CDS | 50.0% | |
| GCATAACATCGATGTCTCGG+AGG | + | Chr7:57510933-57510952 | MsG0780039073.01.T01:CDS | 50.0% | |
| TGTAGTCGTCAATCCAGTGG+TGG | + | Chr7:57510988-57511007 | MsG0780039073.01.T01:CDS | 50.0% | |
| ! | GCTTCGCCATTTGATGACTG+TGG | - | Chr7:57512054-57512073 | None:intergenic | 50.0% |
| !! | CGTGGATGTCACTTTCAACG+AGG | + | Chr7:57511239-57511258 | MsG0780039073.01.T01:CDS | 50.0% |
| CATGTGTTCTACCCCGCCAA+AGG | - | Chr7:57511734-57511753 | None:intergenic | 55.0% | |
| CCCCGCCAAAGGGAAATGTA+AGG | - | Chr7:57511723-57511742 | None:intergenic | 55.0% | |
| GGCGAAGCGTATGGTGATTG+TGG | + | Chr7:57512066-57512085 | MsG0780039073.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 57510637 | 57512490 | 57510637 | ID=MsG0780039073.01;Name=MsG0780039073.01 |
| Chr7 | mRNA | 57510637 | 57512490 | 57510637 | ID=MsG0780039073.01.T01;Parent=MsG0780039073.01;Name=MsG0780039073.01.T01;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|1|1|3|0|509 |
| Chr7 | exon | 57510637 | 57511260 | 57510637 | ID=MsG0780039073.01.T01:exon:27352;Parent=MsG0780039073.01.T01 |
| Chr7 | exon | 57511481 | 57512245 | 57511481 | ID=MsG0780039073.01.T01:exon:27353;Parent=MsG0780039073.01.T01 |
| Chr7 | exon | 57512350 | 57512490 | 57512350 | ID=MsG0780039073.01.T01:exon:27354;Parent=MsG0780039073.01.T01 |
| Chr7 | CDS | 57510637 | 57511260 | 57510637 | ID=MsG0780039073.01.T01:cds;Parent=MsG0780039073.01.T01 |
| Chr7 | CDS | 57511481 | 57512245 | 57511481 | ID=MsG0780039073.01.T01:cds;Parent=MsG0780039073.01.T01 |
| Chr7 | CDS | 57512350 | 57512490 | 57512350 | ID=MsG0780039073.01.T01:cds;Parent=MsG0780039073.01.T01 |
| Gene Sequence |
| Protein sequence |
