Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038800.01.T01 | KEH22914.1 | 74.338 | 491 | 96 | 5 | 5 | 466 | 3 | 492 | 0 | 697 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038800.01.T01 | A0A072TZK3 | 74.338 | 491 | 96 | 5 | 5 | 466 | 3 | 492 | 0.0 | 697 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380013636.01 | MsG0780038800.01 | 0.821046 | 4.971943e-53 | 4.001529e-50 |
| MsG0680034477.01 | MsG0780038800.01 | 0.800751 | 1.244021e-48 | 5.838596e-46 |
| MsG0380015736.01 | MsG0780038800.01 | 0.807351 | 5.273106e-50 | 2.930484e-47 |
| MsG0280010352.01 | MsG0780038800.01 | 0.835238 | 1.885175e-56 | 2.291641e-53 |
| MsG0780035954.01 | MsG0780038800.01 | 0.806156 | 9.433141e-50 | 5.083421e-47 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038800.01.T01 | MTR_7g062280 | 74.338 | 491 | 96 | 5 | 5 | 466 | 3 | 492 | 0.0 | 697 |
| MsG0780038800.01.T01 | MTR_7g062300 | 76.261 | 476 | 91 | 5 | 1 | 458 | 1 | 472 | 0.0 | 690 |
| MsG0780038800.01.T01 | MTR_7g063920 | 61.795 | 479 | 125 | 6 | 3 | 466 | 2 | 437 | 0.0 | 536 |
| MsG0780038800.01.T01 | MTR_7g063880 | 53.484 | 488 | 181 | 10 | 3 | 465 | 2 | 468 | 1.61e-158 | 457 |
| MsG0780038800.01.T01 | MTR_7g063900 | 53.507 | 499 | 189 | 12 | 1 | 466 | 1 | 489 | 4.29e-155 | 449 |
| MsG0780038800.01.T01 | MTR_7g063840 | 54.105 | 475 | 192 | 10 | 10 | 466 | 8 | 474 | 1.63e-154 | 447 |
| MsG0780038800.01.T01 | MTR_7g063660 | 52.391 | 481 | 202 | 8 | 7 | 466 | 4 | 478 | 8.00e-150 | 436 |
| MsG0780038800.01.T01 | MTR_7g063830 | 51.883 | 478 | 183 | 9 | 1 | 465 | 1 | 444 | 9.53e-149 | 431 |
| MsG0780038800.01.T01 | MTR_7g063820 | 51.340 | 485 | 211 | 9 | 5 | 466 | 3 | 485 | 7.38e-145 | 423 |
| MsG0780038800.01.T01 | MTR_3g007740 | 49.582 | 478 | 177 | 13 | 8 | 460 | 5 | 443 | 3.55e-133 | 392 |
| MsG0780038800.01.T01 | MTR_7g063890 | 52.577 | 485 | 196 | 11 | 10 | 465 | 25 | 504 | 9.59e-132 | 390 |
| MsG0780038800.01.T01 | MTR_7g063670 | 49.275 | 483 | 182 | 11 | 10 | 466 | 13 | 458 | 6.43e-130 | 384 |
| MsG0780038800.01.T01 | MTR_7g066570 | 42.073 | 492 | 240 | 10 | 4 | 463 | 6 | 484 | 9.23e-112 | 341 |
| MsG0780038800.01.T01 | MTR_7g066260 | 42.324 | 482 | 226 | 12 | 4 | 459 | 7 | 462 | 5.92e-106 | 324 |
| MsG0780038800.01.T01 | MTR_7g066430 | 41.036 | 502 | 239 | 12 | 13 | 465 | 5 | 498 | 1.78e-103 | 318 |
| MsG0780038800.01.T01 | MTR_7g066430 | 27.826 | 230 | 138 | 8 | 244 | 453 | 4 | 225 | 7.94e-14 | 73.9 |
| MsG0780038800.01.T01 | MTR_7g066430 | 26.033 | 242 | 146 | 9 | 1 | 218 | 247 | 479 | 6.71e-11 | 64.7 |
| MsG0780038800.01.T01 | MTR_7g066410 | 38.654 | 520 | 254 | 13 | 1 | 461 | 1 | 514 | 7.02e-101 | 311 |
| MsG0780038800.01.T01 | MTR_7g012680 | 40.586 | 478 | 238 | 12 | 4 | 466 | 6 | 452 | 3.73e-97 | 300 |
| MsG0780038800.01.T01 | MTR_3g065200 | 41.573 | 445 | 211 | 11 | 12 | 446 | 3 | 408 | 9.71e-93 | 289 |
| MsG0780038800.01.T01 | MTR_7g066360 | 40.000 | 485 | 217 | 14 | 2 | 455 | 4 | 445 | 8.83e-90 | 282 |
| MsG0780038800.01.T01 | MTR_7g058710 | 34.866 | 522 | 246 | 11 | 1 | 466 | 1 | 484 | 2.15e-88 | 278 |
| MsG0780038800.01.T01 | MTR_7g066580 | 37.953 | 469 | 246 | 7 | 18 | 462 | 1 | 448 | 1.62e-87 | 275 |
| MsG0780038800.01.T01 | MTR_7g066580 | 30.435 | 184 | 108 | 7 | 11 | 180 | 214 | 391 | 1.95e-11 | 66.2 |
| MsG0780038800.01.T01 | MTR_7g066290 | 38.382 | 482 | 218 | 11 | 3 | 459 | 6 | 433 | 5.78e-87 | 273 |
| MsG0780038800.01.T01 | MTR_7g066350 | 38.055 | 473 | 238 | 8 | 13 | 461 | 10 | 451 | 2.39e-86 | 272 |
| MsG0780038800.01.T01 | MTR_7g066350 | 34.234 | 222 | 131 | 7 | 244 | 453 | 9 | 227 | 2.44e-20 | 93.6 |
| MsG0780038800.01.T01 | MTR_7g066340 | 36.531 | 490 | 243 | 12 | 1 | 459 | 1 | 453 | 2.06e-85 | 270 |
| MsG0780038800.01.T01 | MTR_7g062270 | 68.817 | 186 | 56 | 2 | 3 | 188 | 2 | 185 | 1.40e-83 | 263 |
| MsG0780038800.01.T01 | MTR_7g063720 | 54.286 | 245 | 97 | 4 | 224 | 466 | 2 | 233 | 1.18e-80 | 250 |
| MsG0780038800.01.T01 | MTR_7g063720 | 29.596 | 223 | 110 | 10 | 15 | 218 | 26 | 220 | 1.35e-13 | 70.9 |
| MsG0780038800.01.T01 | MTR_7g066490 | 37.555 | 458 | 210 | 10 | 12 | 459 | 16 | 407 | 9.64e-80 | 254 |
| MsG0780038800.01.T01 | MTR_7g066480 | 37.209 | 473 | 207 | 10 | 12 | 460 | 16 | 422 | 1.31e-79 | 254 |
| MsG0780038800.01.T01 | MTR_7g066480 | 27.897 | 233 | 150 | 7 | 231 | 453 | 6 | 230 | 1.49e-13 | 72.8 |
| MsG0780038800.01.T01 | MTR_7g066400 | 34.356 | 489 | 243 | 10 | 1 | 461 | 1 | 439 | 1.48e-79 | 254 |
| MsG0780038800.01.T01 | MTR_1g041315 | 34.382 | 477 | 247 | 9 | 3 | 443 | 5 | 451 | 2.80e-78 | 252 |
| MsG0780038800.01.T01 | MTR_1g014060 | 36.526 | 449 | 216 | 11 | 21 | 466 | 9 | 391 | 1.14e-76 | 245 |
| MsG0780038800.01.T01 | MTR_7g058700 | 35.924 | 476 | 194 | 11 | 24 | 466 | 531 | 928 | 2.33e-75 | 254 |
| MsG0780038800.01.T01 | MTR_4g019310 | 33.400 | 503 | 286 | 14 | 6 | 466 | 2 | 497 | 5.93e-72 | 236 |
| MsG0780038800.01.T01 | MTR_4g017830 | 31.179 | 526 | 282 | 17 | 1 | 465 | 1 | 507 | 5.14e-58 | 200 |
| MsG0780038800.01.T01 | MTR_7g063850 | 41.118 | 304 | 142 | 8 | 183 | 465 | 1 | 288 | 3.33e-57 | 191 |
| MsG0780038800.01.T01 | MTR_2g029400 | 30.932 | 472 | 232 | 9 | 2 | 449 | 4 | 405 | 7.01e-57 | 194 |
| MsG0780038800.01.T01 | MTR_7g100420 | 41.325 | 317 | 158 | 8 | 157 | 455 | 87 | 393 | 2.87e-55 | 189 |
| MsG0780038800.01.T01 | MTR_7g100420 | 64.815 | 54 | 17 | 1 | 2 | 55 | 31 | 82 | 1.30e-12 | 69.7 |
| MsG0780038800.01.T01 | MTR_4g019340 | 31.818 | 484 | 268 | 14 | 9 | 447 | 35 | 501 | 7.07e-50 | 177 |
| MsG0780038800.01.T01 | MTR_7g066280 | 31.373 | 408 | 223 | 12 | 91 | 459 | 1 | 390 | 6.60e-49 | 173 |
| MsG0780038800.01.T01 | MTR_4g017410 | 31.002 | 529 | 255 | 19 | 6 | 465 | 3 | 490 | 2.63e-48 | 173 |
| MsG0780038800.01.T01 | MTR_4g017410 | 28.340 | 247 | 150 | 6 | 245 | 466 | 10 | 254 | 6.47e-14 | 74.3 |
| MsG0780038800.01.T01 | MTR_4g017440 | 29.435 | 513 | 285 | 17 | 6 | 459 | 8 | 502 | 1.40e-47 | 171 |
| MsG0780038800.01.T01 | MTR_4g017610 | 31.062 | 499 | 276 | 18 | 1 | 455 | 1 | 475 | 4.28e-45 | 164 |
| MsG0780038800.01.T01 | MTR_4g017610 | 28.452 | 239 | 148 | 6 | 247 | 465 | 16 | 251 | 1.38e-14 | 76.3 |
| MsG0780038800.01.T01 | MTR_4g017470 | 27.606 | 518 | 280 | 13 | 1 | 465 | 1 | 476 | 6.05e-45 | 164 |
| MsG0780038800.01.T01 | MTR_7g066680 | 35.621 | 306 | 136 | 9 | 202 | 455 | 38 | 334 | 1.18e-39 | 146 |
| MsG0780038800.01.T01 | MTR_7g066680 | 28.218 | 202 | 119 | 7 | 2 | 193 | 77 | 262 | 2.22e-12 | 68.6 |
| MsG0780038800.01.T01 | MTR_7g066310 | 37.500 | 216 | 110 | 3 | 244 | 459 | 193 | 383 | 5.38e-36 | 137 |
| MsG0780038800.01.T01 | MTR_7g066310 | 47.059 | 136 | 71 | 1 | 13 | 148 | 8 | 142 | 3.43e-31 | 124 |
| MsG0780038800.01.T01 | MTR_8g023240 | 27.273 | 473 | 285 | 16 | 13 | 453 | 38 | 483 | 2.27e-34 | 135 |
| MsG0780038800.01.T01 | MTR_4g017550 | 29.114 | 474 | 255 | 18 | 42 | 457 | 21 | 471 | 4.61e-32 | 128 |
| MsG0780038800.01.T01 | MTR_4g017550 | 31.844 | 179 | 101 | 5 | 15 | 180 | 250 | 420 | 5.20e-13 | 71.2 |
| MsG0780038800.01.T01 | MTR_7g063690 | 42.958 | 142 | 67 | 3 | 144 | 271 | 81 | 222 | 5.49e-26 | 106 |
| MsG0780038800.01.T01 | MTR_7g063690 | 65.000 | 60 | 20 | 1 | 3 | 61 | 2 | 61 | 3.32e-15 | 75.5 |
| MsG0780038800.01.T01 | MTR_7g063760 | 56.757 | 74 | 31 | 1 | 394 | 466 | 1 | 74 | 8.35e-22 | 89.4 |
| MsG0780038800.01.T01 | MTR_8g445860 | 29.719 | 249 | 130 | 9 | 3 | 224 | 8 | 238 | 2.11e-19 | 87.8 |
| MsG0780038800.01.T01 | MTR_1g115440 | 29.870 | 231 | 133 | 10 | 244 | 453 | 11 | 233 | 2.81e-19 | 87.4 |
| MsG0780038800.01.T01 | MTR_1g115440 | 29.600 | 250 | 137 | 9 | 1 | 223 | 1 | 238 | 2.26e-16 | 79.0 |
| MsG0780038800.01.T01 | MTR_7g066390 | 57.971 | 69 | 29 | 0 | 387 | 455 | 50 | 118 | 5.82e-18 | 81.3 |
| MsG0780038800.01.T01 | MTR_0150s0010 | 28.571 | 224 | 143 | 6 | 244 | 452 | 10 | 231 | 2.57e-17 | 81.6 |
| MsG0780038800.01.T01 | MTR_0150s0010 | 28.455 | 246 | 138 | 9 | 5 | 223 | 3 | 237 | 2.97e-15 | 75.5 |
| MsG0780038800.01.T01 | MTR_2g067310 | 35.632 | 174 | 68 | 5 | 12 | 181 | 43 | 176 | 2.10e-16 | 79.0 |
| MsG0780038800.01.T01 | MTR_7g063870 | 58.929 | 56 | 23 | 0 | 6 | 61 | 25 | 80 | 2.61e-14 | 73.2 |
| MsG0780038800.01.T01 | MTR_1g115455 | 28.405 | 257 | 127 | 9 | 1 | 224 | 1 | 233 | 2.98e-12 | 66.6 |
| MsG0780038800.01.T01 | MTR_4g019240 | 36.364 | 121 | 66 | 4 | 1 | 112 | 1 | 119 | 6.85e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038800.01.T01 | AT5G01120 | 32.231 | 484 | 285 | 11 | 13 | 458 | 10 | 488 | 1.10e-56 | 196 |
| MsG0780038800.01.T01 | AT3G09140 | 31.881 | 505 | 273 | 14 | 11 | 461 | 8 | 495 | 2.32e-56 | 195 |
| MsG0780038800.01.T01 | AT5G01150 | 30.333 | 511 | 277 | 15 | 7 | 464 | 4 | 488 | 2.61e-55 | 192 |
| MsG0780038800.01.T01 | AT3G09140 | 30.394 | 533 | 272 | 15 | 11 | 461 | 8 | 523 | 1.63e-53 | 188 |
| MsG0780038800.01.T01 | AT5G01130 | 30.000 | 500 | 258 | 16 | 7 | 466 | 4 | 451 | 3.71e-49 | 174 |
| MsG0780038800.01.T01 | AT3G09110 | 33.762 | 311 | 182 | 6 | 15 | 305 | 12 | 318 | 1.88e-45 | 162 |
| MsG0780038800.01.T01 | AT5G43240 | 28.884 | 502 | 276 | 14 | 13 | 455 | 10 | 489 | 5.54e-44 | 162 |
| MsG0780038800.01.T01 | AT5G43240 | 28.884 | 502 | 276 | 14 | 13 | 455 | 10 | 489 | 5.54e-44 | 162 |
| MsG0780038800.01.T01 | AT5G43240 | 28.884 | 502 | 276 | 14 | 13 | 455 | 10 | 489 | 5.54e-44 | 162 |
| MsG0780038800.01.T01 | AT5G01140 | 27.755 | 490 | 289 | 11 | 7 | 466 | 4 | 458 | 3.78e-43 | 159 |
| MsG0780038800.01.T01 | AT3G09120 | 33.939 | 330 | 162 | 11 | 7 | 298 | 2 | 313 | 4.48e-39 | 144 |
| MsG0780038800.01.T01 | AT3G09120 | 28.085 | 235 | 133 | 7 | 244 | 453 | 6 | 229 | 1.49e-12 | 68.9 |
| MsG0780038800.01.T01 | AT5G37320 | 29.175 | 497 | 272 | 19 | 17 | 461 | 13 | 481 | 7.79e-38 | 144 |
| MsG0780038800.01.T01 | AT5G43240 | 27.327 | 333 | 190 | 10 | 163 | 455 | 25 | 345 | 3.77e-15 | 77.4 |
Find 79 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGAATTGTTCAAATATT+TGG | 0.122085 | 7:+53244987 | MsG0780038800.01.T01:CDS |
| CCACCTGTTTGTAATTATTA+TGG | 0.205658 | 7:+53245170 | MsG0780038800.01.T01:CDS |
| TTTAATATGTTCACGGAGTT+TGG | 0.243222 | 7:+53244594 | MsG0780038800.01.T01:CDS |
| TAACTAGCTTCAGAATGATT+TGG | 0.271516 | 7:-53244878 | None:intergenic |
| GTCAATACAGTTTGGCTTGA+TGG | 0.284902 | 7:-53244562 | None:intergenic |
| CATCCGATGATGTCAAATAT+TGG | 0.288315 | 7:-53245073 | None:intergenic |
| CAAACAGGTGGTTGAAGAAT+TGG | 0.296733 | 7:-53245158 | None:intergenic |
| GTACAAGAGTATAGTTGATT+TGG | 0.317989 | 7:+53245043 | MsG0780038800.01.T01:CDS |
| AGTAAACCCAAAGCTGAAAT+TGG | 0.334732 | 7:-53245371 | None:intergenic |
| GGGAGAGGTTTAAGGAAAAT+TGG | 0.345259 | 7:-53244489 | None:intergenic |
| TGCGAGCCAAACCATTTGTT+AGG | 0.349126 | 7:-53245585 | None:intergenic |
| ATTGACTCCAATTTCAGCTT+TGG | 0.362521 | 7:+53245364 | MsG0780038800.01.T01:CDS |
| TTGACTCCAATTTCAGCTTT+GGG | 0.364093 | 7:+53245365 | MsG0780038800.01.T01:CDS |
| CTTGTATAGTCAATACAGTT+TGG | 0.367447 | 7:-53244570 | None:intergenic |
| AACCATCCCTTGAGAGTTCA+AGG | 0.367767 | 7:+53244820 | MsG0780038800.01.T01:CDS |
| TTTAGGAACCATTGCGAGAT+TGG | 0.390984 | 7:+53244170 | MsG0780038800.01.T01:CDS |
| AACTCCCCTTAATGATTTGA+AGG | 0.395649 | 7:+53245406 | MsG0780038800.01.T01:CDS |
| TTATCTAATGTGATGATTCC+TGG | 0.396168 | 7:+53245281 | MsG0780038800.01.T01:CDS |
| TTCTTGCTTAACTTTAACTG+TGG | 0.402454 | 7:-53245128 | None:intergenic |
| ACATGCGCTGCCAACTCTAA+TGG | 0.404291 | 7:+53244390 | MsG0780038800.01.T01:CDS |
| TGTTCCTTGGGAAGCATCAA+TGG | 0.408006 | 7:+53245017 | MsG0780038800.01.T01:CDS |
| AGCTTCTTAACAATGCCTTT+AGG | 0.411653 | 7:+53244153 | MsG0780038800.01.T01:CDS |
| AAAGTCTTGTTTGCAGAAGC+AGG | 0.413091 | 7:+53244105 | MsG0780038800.01.T01:CDS |
| ATCTGCCCTAACAAATGGTT+TGG | 0.417279 | 7:+53245579 | MsG0780038800.01.T01:CDS |
| TGCACCATTAACAAATCCTT+GGG | 0.422554 | 7:-53244511 | None:intergenic |
| ATTTGGAGGGACTTGTTCCT+TGG | 0.422747 | 7:+53245004 | MsG0780038800.01.T01:CDS |
| TAATCTTCGGCTGAGTTGAT+TGG | 0.425110 | 7:-53244315 | None:intergenic |
| TATGTTGATGTGATCATATC+CGG | 0.428315 | 7:-53244423 | None:intergenic |
| CAAATCTGTCAAGGTTGACT+TGG | 0.429040 | 7:-53244784 | None:intergenic |
| GTAGTGTCTTAACATATTGA+AGG | 0.434262 | 7:+53245540 | MsG0780038800.01.T01:intron |
| CCTGGTGATGGTTATGTAAA+GGG | 0.442731 | 7:+53245299 | MsG0780038800.01.T01:CDS |
| CTGCACCATTAACAAATCCT+TGG | 0.454659 | 7:-53244512 | None:intergenic |
| TACAAGCTTTAATATGTTCA+CGG | 0.461029 | 7:+53244587 | MsG0780038800.01.T01:CDS |
| AAGAGCGCTGCAATAATCTT+CGG | 0.463496 | 7:-53244328 | None:intergenic |
| CAACCATAATAATTACAAAC+AGG | 0.468189 | 7:-53245173 | None:intergenic |
| TCGCATGCTAACTGAAGTTA+AGG | 0.479595 | 7:+53245603 | MsG0780038800.01.T01:CDS |
| TCAACATCTGCCCTAACAAA+TGG | 0.480143 | 7:+53245574 | MsG0780038800.01.T01:CDS |
| AAAGCTGAAATTGGAGTCAA+TGG | 0.488614 | 7:-53245362 | None:intergenic |
| CTCTAATGGCTGCTATGCTC+CGG | 0.491754 | 7:+53244404 | MsG0780038800.01.T01:CDS |
| AGTTATAACTATTGGCATCA+AGG | 0.496598 | 7:+53245433 | MsG0780038800.01.T01:CDS |
| TTTCTTACATTTCCTTTGGG+TGG | 0.496782 | 7:+53244969 | MsG0780038800.01.T01:CDS |
| TTTGGAGGGACTTGTTCCTT+GGG | 0.497730 | 7:+53245005 | MsG0780038800.01.T01:CDS |
| AACAAGTTATTGTATGCTCA+AGG | 0.499394 | 7:+53244915 | MsG0780038800.01.T01:CDS |
| TCTTGCTTAACTTTAACTGT+GGG | 0.513623 | 7:-53245127 | None:intergenic |
| AGCATAGCAGCCATTAGAGT+TGG | 0.515293 | 7:-53244400 | None:intergenic |
| CATCATCGGATGCTAAGAAC+AGG | 0.519251 | 7:+53245084 | MsG0780038800.01.T01:CDS |
| GGAATTGTTCAAATATTTGG+AGG | 0.521097 | 7:+53244990 | MsG0780038800.01.T01:CDS |
| GCGAGCCAAACCATTTGTTA+GGG | 0.525315 | 7:-53245584 | None:intergenic |
| AACCTTGAACTCTCAAGGGA+TGG | 0.527200 | 7:-53244822 | None:intergenic |
| TCTGTAGCAAAATACATAGC+TGG | 0.536774 | 7:-53245323 | None:intergenic |
| CTTGTTTGCAGAAGCAGGGA+AGG | 0.539743 | 7:+53244110 | MsG0780038800.01.T01:CDS |
| GCGCATGTGAAGTACTTTGT+TGG | 0.540167 | 7:-53244375 | None:intergenic |
| TCCTGGTGATGGTTATGTAA+AGG | 0.556342 | 7:+53245298 | MsG0780038800.01.T01:CDS |
| AGAAGCAGGGAAGGACTTTG+TGG | 0.556414 | 7:+53244119 | MsG0780038800.01.T01:CDS |
| TCGTTCAAAAGAAGTTTCAA+AGG | 0.558700 | 7:-53244072 | None:intergenic |
| TGATGAAGGCTGTATGTCTA+CGG | 0.561304 | 7:+53244266 | MsG0780038800.01.T01:CDS |
| AAACCAATATTTGACATCAT+CGG | 0.567419 | 7:+53245070 | MsG0780038800.01.T01:CDS |
| AAGTCTTGTTTGCAGAAGCA+GGG | 0.574475 | 7:+53244106 | MsG0780038800.01.T01:CDS |
| GAATTGTTCAAATATTTGGA+GGG | 0.576322 | 7:+53244991 | MsG0780038800.01.T01:CDS |
| CCCTTTACATAACCATCACC+AGG | 0.576971 | 7:-53245299 | None:intergenic |
| CATTGCGAGATTGGTAGAGA+AGG | 0.577515 | 7:+53244179 | MsG0780038800.01.T01:CDS |
| AATCTCGCAATGGTTCCTAA+AGG | 0.583079 | 7:-53244168 | None:intergenic |
| TAGAGAAGGAATCTAGCATA+GGG | 0.584603 | 7:+53244193 | MsG0780038800.01.T01:CDS |
| GTAGAGAAGGAATCTAGCAT+AGG | 0.592587 | 7:+53244192 | MsG0780038800.01.T01:CDS |
| CTTCTCTACCAATCTCGCAA+TGG | 0.597488 | 7:-53244178 | None:intergenic |
| TTTAACTGTGGGGCAATGCG+AGG | 0.601228 | 7:-53245116 | None:intergenic |
| ATTTGAACAATTCCACCCAA+AGG | 0.615231 | 7:-53244981 | None:intergenic |
| AAACTCACTCTATAAAAGTG+TGG | 0.625241 | 7:+53244236 | MsG0780038800.01.T01:CDS |
| ACAAGTTATTGTATGCTCAA+GGG | 0.631934 | 7:+53244916 | MsG0780038800.01.T01:CDS |
| CAATCCATTGATGCTTCCCA+AGG | 0.636233 | 7:-53245021 | None:intergenic |
| GATAAATATAAATGTCAATG+TGG | 0.642959 | 7:+53244450 | MsG0780038800.01.T01:CDS |
| CCATAATAATTACAAACAGG+TGG | 0.643844 | 7:-53245170 | None:intergenic |
| CTTGCTTAACTTTAACTGTG+GGG | 0.646219 | 7:-53245126 | None:intergenic |
| AATGTGATGATTCCTGGTGA+TGG | 0.650008 | 7:+53245287 | MsG0780038800.01.T01:CDS |
| AGTGTGGCAGATCTTGATGA+AGG | 0.665549 | 7:+53244252 | MsG0780038800.01.T01:CDS |
| CACCATTAACAAATCCTTGG+GGG | 0.667456 | 7:-53244509 | None:intergenic |
| GCACCATTAACAAATCCTTG+GGG | 0.682676 | 7:-53244510 | None:intergenic |
| TGAAGGCTGTATGTCTACGG+AGG | 0.718817 | 7:+53244269 | MsG0780038800.01.T01:CDS |
| TATAACTATTGGCATCAAGG+AGG | 0.725061 | 7:+53245436 | MsG0780038800.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGGAAAAAGTTATAACTAT+TGG | + | Chr7:53245425-53245444 | MsG0780038800.01.T01:CDS | 20.0% |
| !! | GATAAATATAAATGTCAATG+TGG | + | Chr7:53244450-53244469 | MsG0780038800.01.T01:CDS | 20.0% |
| !!! | ATTCATTTTGAAATCAAATC+TGG | + | Chr7:53245227-53245246 | MsG0780038800.01.T01:CDS | 20.0% |
| !!! | TTTTTCCTTCAAATCATTAA+GGG | - | Chr7:53245414-53245433 | None:intergenic | 20.0% |
| ! | AAACCAATATTTGACATCAT+CGG | + | Chr7:53245070-53245089 | MsG0780038800.01.T01:CDS | 25.0% |
| ! | CAACCATAATAATTACAAAC+AGG | - | Chr7:53245176-53245195 | None:intergenic | 25.0% |
| ! | GAATTGTTCAAATATTTGGA+GGG | + | Chr7:53244991-53245010 | MsG0780038800.01.T01:CDS | 25.0% |
| !! | AAGTTTTCTTACATTTCCTT+TGG | + | Chr7:53244965-53244984 | MsG0780038800.01.T01:CDS | 25.0% |
| !! | AGTTTTCTTACATTTCCTTT+GGG | + | Chr7:53244966-53244985 | MsG0780038800.01.T01:CDS | 25.0% |
| !! | CTTTTTCCTTCAAATCATTA+AGG | - | Chr7:53245415-53245434 | None:intergenic | 25.0% |
| !! | TAACTACTACTGTTTTATAC+AGG | + | Chr7:53244731-53244750 | MsG0780038800.01.T01:intron | 25.0% |
| !! | TACAAGCTTTAATATGTTCA+CGG | + | Chr7:53244587-53244606 | MsG0780038800.01.T01:CDS | 25.0% |
| !! | TTTTCCTTCAAATCATTAAG+GGG | - | Chr7:53245413-53245432 | None:intergenic | 25.0% |
| AAACTCACTCTATAAAAGTG+TGG | + | Chr7:53244236-53244255 | MsG0780038800.01.T01:CDS | 30.0% | |
| AACAAGTTATTGTATGCTCA+AGG | + | Chr7:53244915-53244934 | MsG0780038800.01.T01:CDS | 30.0% | |
| ACAAGTTATTGTATGCTCAA+GGG | + | Chr7:53244916-53244935 | MsG0780038800.01.T01:CDS | 30.0% | |
| AGTTATAACTATTGGCATCA+AGG | + | Chr7:53245433-53245452 | MsG0780038800.01.T01:CDS | 30.0% | |
| CCACCTGTTTGTAATTATTA+TGG | + | Chr7:53245170-53245189 | MsG0780038800.01.T01:CDS | 30.0% | |
| CCATAATAATTACAAACAGG+TGG | - | Chr7:53245173-53245192 | None:intergenic | 30.0% | |
| CTTGTATAGTCAATACAGTT+TGG | - | Chr7:53244573-53244592 | None:intergenic | 30.0% | |
| GGAATTGTTCAAATATTTGG+AGG | + | Chr7:53244990-53245009 | MsG0780038800.01.T01:CDS | 30.0% | |
| GGTGGAATTGTTCAAATATT+TGG | + | Chr7:53244987-53245006 | MsG0780038800.01.T01:CDS | 30.0% | |
| GTAGTGTCTTAACATATTGA+AGG | + | Chr7:53245540-53245559 | MsG0780038800.01.T01:intron | 30.0% | |
| TATGTTGATGTGATCATATC+CGG | - | Chr7:53244426-53244445 | None:intergenic | 30.0% | |
| TCGTTCAAAAGAAGTTTCAA+AGG | - | Chr7:53244075-53244094 | None:intergenic | 30.0% | |
| TCTGAATGTCACTAAAGAAA+AGG | + | Chr7:53244650-53244669 | MsG0780038800.01.T01:intron | 30.0% | |
| TCTTGCTTAACTTTAACTGT+GGG | - | Chr7:53245130-53245149 | None:intergenic | 30.0% | |
| TGGCATAAAAAACCATAGTT+CGG | + | Chr7:53244614-53244633 | MsG0780038800.01.T01:CDS | 30.0% | |
| TTATCTAATGTGATGATTCC+TGG | + | Chr7:53245281-53245300 | MsG0780038800.01.T01:CDS | 30.0% | |
| TTCTTGCTTAACTTTAACTG+TGG | - | Chr7:53245131-53245150 | None:intergenic | 30.0% | |
| TTTAATATGTTCACGGAGTT+TGG | + | Chr7:53244594-53244613 | MsG0780038800.01.T01:CDS | 30.0% | |
| ! | GTACAAGAGTATAGTTGATT+TGG | + | Chr7:53245043-53245062 | MsG0780038800.01.T01:CDS | 30.0% |
| ! | GTATTTTGCTACAGATGATT+TGG | + | Chr7:53245331-53245350 | MsG0780038800.01.T01:CDS | 30.0% |
| ! | TAACTAGCTTCAGAATGATT+TGG | - | Chr7:53244881-53244900 | None:intergenic | 30.0% |
| !! | ACCTTGACAGATTTGTTTTT+AGG | + | Chr7:53244792-53244811 | MsG0780038800.01.T01:CDS | 30.0% |
| !!! | CCTTGACAGATTTGTTTTTA+GGG | + | Chr7:53244793-53244812 | MsG0780038800.01.T01:CDS | 30.0% |
| AAAGCTGAAATTGGAGTCAA+TGG | - | Chr7:53245365-53245384 | None:intergenic | 35.0% | |
| AACTCCCCTTAATGATTTGA+AGG | + | Chr7:53245406-53245425 | MsG0780038800.01.T01:CDS | 35.0% | |
| AGAAAAACCTTGAACTCTCA+AGG | - | Chr7:53244830-53244849 | None:intergenic | 35.0% | |
| AGCTTCTTAACAATGCCTTT+AGG | + | Chr7:53244153-53244172 | MsG0780038800.01.T01:CDS | 35.0% | |
| AGTAAACCCAAAGCTGAAAT+TGG | - | Chr7:53245374-53245393 | None:intergenic | 35.0% | |
| ATTTGAACAATTCCACCCAA+AGG | - | Chr7:53244984-53245003 | None:intergenic | 35.0% | |
| CATCCGATGATGTCAAATAT+TGG | - | Chr7:53245076-53245095 | None:intergenic | 35.0% | |
| CCCTAAAAACAAATCTGTCA+AGG | - | Chr7:53244796-53244815 | None:intergenic | 35.0% | |
| CTTGCTTAACTTTAACTGTG+GGG | - | Chr7:53245129-53245148 | None:intergenic | 35.0% | |
| GAAAAACCTTGAACTCTCAA+GGG | - | Chr7:53244829-53244848 | None:intergenic | 35.0% | |
| TAGAGAAGGAATCTAGCATA+GGG | + | Chr7:53244193-53244212 | MsG0780038800.01.T01:CDS | 35.0% | |
| TATAACTATTGGCATCAAGG+AGG | + | Chr7:53245436-53245455 | MsG0780038800.01.T01:CDS | 35.0% | |
| TCTGTAGCAAAATACATAGC+TGG | - | Chr7:53245326-53245345 | None:intergenic | 35.0% | |
| TGCACCATTAACAAATCCTT+GGG | - | Chr7:53244514-53244533 | None:intergenic | 35.0% | |
| TTGACTCCAATTTCAGCTTT+GGG | + | Chr7:53245365-53245384 | MsG0780038800.01.T01:CDS | 35.0% | |
| TTTCTTACATTTCCTTTGGG+TGG | + | Chr7:53244969-53244988 | MsG0780038800.01.T01:CDS | 35.0% | |
| ! | ATTGACTCCAATTTCAGCTT+TGG | + | Chr7:53245364-53245383 | MsG0780038800.01.T01:CDS | 35.0% |
| ! | CATTAAGGGGAGTTTTCAAT+CGG | - | Chr7:53245400-53245419 | None:intergenic | 35.0% |
| AATCTCGCAATGGTTCCTAA+AGG | - | Chr7:53244171-53244190 | None:intergenic | 40.0% | |
| AATGTGATGATTCCTGGTGA+TGG | + | Chr7:53245287-53245306 | MsG0780038800.01.T01:CDS | 40.0% | |
| ATCTGCCCTAACAAATGGTT+TGG | + | Chr7:53245579-53245598 | MsG0780038800.01.T01:CDS | 40.0% | |
| CAAACAGGTGGTTGAAGAAT+TGG | - | Chr7:53245161-53245180 | None:intergenic | 40.0% | |
| CAAATCTGTCAAGGTTGACT+TGG | - | Chr7:53244787-53244806 | None:intergenic | 40.0% | |
| CACCATTAACAAATCCTTGG+GGG | - | Chr7:53244512-53244531 | None:intergenic | 40.0% | |
| CCATAGTTCGGTAAAAGAAG+TGG | + | Chr7:53244626-53244645 | MsG0780038800.01.T01:intron | 40.0% | |
| CTGCACCATTAACAAATCCT+TGG | - | Chr7:53244515-53244534 | None:intergenic | 40.0% | |
| GCACCATTAACAAATCCTTG+GGG | - | Chr7:53244513-53244532 | None:intergenic | 40.0% | |
| GGGAGAGGTTTAAGGAAAAT+TGG | - | Chr7:53244492-53244511 | None:intergenic | 40.0% | |
| GTAGAGAAGGAATCTAGCAT+AGG | + | Chr7:53244192-53244211 | MsG0780038800.01.T01:CDS | 40.0% | |
| TCAACATCTGCCCTAACAAA+TGG | + | Chr7:53245574-53245593 | MsG0780038800.01.T01:CDS | 40.0% | |
| TCGCATGCTAACTGAAGTTA+AGG | + | Chr7:53245603-53245622 | MsG0780038800.01.T01:CDS | 40.0% | |
| TGATGAAGGCTGTATGTCTA+CGG | + | Chr7:53244266-53244285 | MsG0780038800.01.T01:CDS | 40.0% | |
| TTTAGGAACCATTGCGAGAT+TGG | + | Chr7:53244170-53244189 | MsG0780038800.01.T01:CDS | 40.0% | |
| ! | CCACTTCTTTTACCGAACTA+TGG | - | Chr7:53244629-53244648 | None:intergenic | 40.0% |
| !! | AAAGTCTTGTTTGCAGAAGC+AGG | + | Chr7:53244105-53244124 | MsG0780038800.01.T01:CDS | 40.0% |
| !! | AAGAGCGCTGCAATAATCTT+CGG | - | Chr7:53244331-53244350 | None:intergenic | 40.0% |
| !! | AAGTCTTGTTTGCAGAAGCA+GGG | + | Chr7:53244106-53244125 | MsG0780038800.01.T01:CDS | 40.0% |
| !! | CCTGGTGATGGTTATGTAAA+GGG | + | Chr7:53245299-53245318 | MsG0780038800.01.T01:CDS | 40.0% |
| !! | GTCAATACAGTTTGGCTTGA+TGG | - | Chr7:53244565-53244584 | None:intergenic | 40.0% |
| !! | TAATCTTCGGCTGAGTTGAT+TGG | - | Chr7:53244318-53244337 | None:intergenic | 40.0% |
| !! | TCCTGGTGATGGTTATGTAA+AGG | + | Chr7:53245298-53245317 | MsG0780038800.01.T01:CDS | 40.0% |
| AACCATCCCTTGAGAGTTCA+AGG | + | Chr7:53244820-53244839 | MsG0780038800.01.T01:CDS | 45.0% | |
| AACCTTGAACTCTCAAGGGA+TGG | - | Chr7:53244825-53244844 | None:intergenic | 45.0% | |
| AGCATAGCAGCCATTAGAGT+TGG | - | Chr7:53244403-53244422 | None:intergenic | 45.0% | |
| AGTGTGGCAGATCTTGATGA+AGG | + | Chr7:53244252-53244271 | MsG0780038800.01.T01:CDS | 45.0% | |
| CAATCCATTGATGCTTCCCA+AGG | - | Chr7:53245024-53245043 | None:intergenic | 45.0% | |
| CATCATCGGATGCTAAGAAC+AGG | + | Chr7:53245084-53245103 | MsG0780038800.01.T01:CDS | 45.0% | |
| CATTGCGAGATTGGTAGAGA+AGG | + | Chr7:53244179-53244198 | MsG0780038800.01.T01:CDS | 45.0% | |
| CCCTTTACATAACCATCACC+AGG | - | Chr7:53245302-53245321 | None:intergenic | 45.0% | |
| CTTCTCTACCAATCTCGCAA+TGG | - | Chr7:53244181-53244200 | None:intergenic | 45.0% | |
| TGCGAGCCAAACCATTTGTT+AGG | - | Chr7:53245588-53245607 | None:intergenic | 45.0% | |
| TTAACAAATCCTTGGGGGAG+AGG | - | Chr7:53244507-53244526 | None:intergenic | 45.0% | |
| ! | ATTTGGAGGGACTTGTTCCT+TGG | + | Chr7:53245004-53245023 | MsG0780038800.01.T01:CDS | 45.0% |
| ! | GCGAGCCAAACCATTTGTTA+GGG | - | Chr7:53245587-53245606 | None:intergenic | 45.0% |
| ! | GCGCATGTGAAGTACTTTGT+TGG | - | Chr7:53244378-53244397 | None:intergenic | 45.0% |
| ! | TTTGGAGGGACTTGTTCCTT+GGG | + | Chr7:53245005-53245024 | MsG0780038800.01.T01:CDS | 45.0% |
| !! | CTCCCCCAAGGATTTGTTAA+TGG | + | Chr7:53244507-53244526 | MsG0780038800.01.T01:CDS | 45.0% |
| !! | TGTTCCTTGGGAAGCATCAA+TGG | + | Chr7:53245017-53245036 | MsG0780038800.01.T01:CDS | 45.0% |
| ACATGCGCTGCCAACTCTAA+TGG | + | Chr7:53244390-53244409 | MsG0780038800.01.T01:CDS | 50.0% | |
| AGAAGCAGGGAAGGACTTTG+TGG | + | Chr7:53244119-53244138 | MsG0780038800.01.T01:CDS | 50.0% | |
| ATCCTTGGGGGAGAGGTTTA+AGG | - | Chr7:53244500-53244519 | None:intergenic | 50.0% | |
| CTCTAATGGCTGCTATGCTC+CGG | + | Chr7:53244404-53244423 | MsG0780038800.01.T01:CDS | 50.0% | |
| CTTGTTTGCAGAAGCAGGGA+AGG | + | Chr7:53244110-53244129 | MsG0780038800.01.T01:CDS | 50.0% | |
| TGAAGGCTGTATGTCTACGG+AGG | + | Chr7:53244269-53244288 | MsG0780038800.01.T01:CDS | 50.0% | |
| TTCCTTAAACCTCTCCCCCA+AGG | + | Chr7:53244495-53244514 | MsG0780038800.01.T01:CDS | 50.0% | |
| TTTAACTGTGGGGCAATGCG+AGG | - | Chr7:53245119-53245138 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 53244033 | 53245636 | 53244033 | ID=MsG0780038800.01;Name=MsG0780038800.01 |
| Chr7 | mRNA | 53244033 | 53245636 | 53244033 | ID=MsG0780038800.01.T01;Parent=MsG0780038800.01;Name=MsG0780038800.01.T01;_AED=0.43;_eAED=0.43;_QI=0|0|0|1|1|1|3|0|466 |
| Chr7 | exon | 53244033 | 53244635 | 53244033 | ID=MsG0780038800.01.T01:exon:8465;Parent=MsG0780038800.01.T01 |
| Chr7 | exon | 53244753 | 53245457 | 53244753 | ID=MsG0780038800.01.T01:exon:8466;Parent=MsG0780038800.01.T01 |
| Chr7 | exon | 53245544 | 53245636 | 53245544 | ID=MsG0780038800.01.T01:exon:8467;Parent=MsG0780038800.01.T01 |
| Chr7 | CDS | 53244033 | 53244635 | 53244033 | ID=MsG0780038800.01.T01:cds;Parent=MsG0780038800.01.T01 |
| Chr7 | CDS | 53244753 | 53245457 | 53244753 | ID=MsG0780038800.01.T01:cds;Parent=MsG0780038800.01.T01 |
| Chr7 | CDS | 53245544 | 53245636 | 53245544 | ID=MsG0780038800.01.T01:cds;Parent=MsG0780038800.01.T01 |
| Gene Sequence |
| Protein sequence |
