AlfalfaGEDB | MsG0780039579.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039579.01

KEGG: K00967
GO: GO:0003824 GO:0009058
PFAM: PF01467

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039579.01.T01	KOM37294.1	71.333	450	76	9	17	440	19	441	0	599

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039579.01.T01	Q9ZVI9	76.266	316	50	2	172	463	107	421	3.17E-168	483

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039579.01.T01	A0A0L9U4G5	71.333	450	76	9	17	440	19	441	0.0	599

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000806.01	MsG0780039579.01	0.803137	4.024304e-49	2.006672e-46
MsG0180004205.01	MsG0780039579.01	0.806275	8.901396e-50	4.811638e-47
MsG0180006243.01	MsG0780039579.01	0.819943	8.905455e-53	6.950336e-50
MsG0280008738.01	MsG0780039579.01	0.806604	7.588201e-50	4.136100e-47
MsG0480019167.01	MsG0780039579.01	0.807804	4.225674e-50	2.376173e-47
MsG0480021432.01	MsG0780039579.01	0.820763	5.776236e-53	4.611815e-50
MsG0480022672.01	MsG0780039579.01	0.821077	4.891913e-53	3.940355e-50
MsG0580024339.01	MsG0780039579.01	0.810424	1.160690e-50	6.993591e-48
MsG0580027464.01	MsG0780039579.01	0.828747	7.571803e-55	7.593198e-52
MsG0780039579.01	MsG0780039713.01	0.812448	4.218303e-51	2.682946e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039579.01.T01	MTR_7g074620	91.772	316	2	1	172	463	107	422	0.0	584
MsG0780039579.01.T01	MTR_7g074620	88.525	122	13	1	1	121	1	122	9.13e-69	225
MsG0780039579.01.T01	MTR_7g074620	91.987	312	1	1	176	463	1	312	0.0	580
MsG0780039579.01.T01	MTR_7g074620	88.362	232	3	1	172	379	107	338	2.41e-143	414
MsG0780039579.01.T01	MTR_7g074620	88.525	122	13	1	1	121	1	122	6.51e-69	224
MsG0780039579.01.T01	MTR_8g101470	50.346	433	112	8	55	463	65	418	9.76e-135	395
MsG0780039579.01.T01	MTR_8g101470	48.997	349	77	6	55	379	65	336	4.44e-100	305
MsG0780039579.01.T01	MTR_8g101470	25.786	159	109	3	307	461	75	228	6.24e-11	64.3
MsG0780039579.01.T01	MTR_3g081530	31.169	154	90	4	172	323	72	211	1.09e-12	68.9
MsG0780039579.01.T01	MTR_3g081530	27.586	174	110	4	291	451	1	171	2.77e-11	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039579.01.T01	AT2G38670	76.266	316	50	2	172	463	107	421	3.24e-169	483
MsG0780039579.01.T01	AT2G38670	91.525	59	5	0	50	108	50	108	1.06e-31	126
MsG0780039579.01.T01	AT2G32260	40.698	86	45	2	172	255	41	122	3.74e-14	73.2
MsG0780039579.01.T01	AT2G32260	32.800	125	81	2	325	449	17	138	6.10e-12	66.6
MsG0780039579.01.T01	AT2G32260	40.698	86	45	2	172	255	90	171	7.15e-14	73.2
MsG0780039579.01.T01	AT2G32260	31.507	146	94	3	307	449	45	187	2.05e-12	68.6

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Find 137 sgRNAs with CRISPR-Local

Find 603 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGATTCGTGTTTATA+TGG	0.236649	7:+66173264	MsG0780039579.01.T01:CDS
AAACAGATAAAGCGCACGGA+AGG	0.598970	7:+66174535	MsG0780039579.01.T01:CDS
AAAGACAGTTCAGCAATGGC+CGG	0.523971	7:+66174851	MsG0780039579.01.T01:CDS
AAATTGAACCTTTCATGTAA+AGG	0.427115	7:-66173418	None:intergenic
AACATCTCATTAGTTGTTCA+TGG	0.281650	7:+66179130	MsG0780039579.01.T01:CDS
AAGAAAATCTCCACGATCCC+TGG	0.449604	7:-66177891	None:intergenic
AAGACAGTTCAGCAATGGCC+GGG	0.509013	7:+66174852	MsG0780039579.01.T01:CDS
AAGCTACTGGGAACGGCATA+TGG	0.355331	7:-66179310	None:intergenic
AATATAGATTACATTATTCA+TGG	0.380755	7:+66174445	MsG0780039579.01.T01:CDS
AATCAGAGGCGCGAACCACG+AGG	0.693582	7:-66181590	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTACGGTAAAGGATTAT+AGG	-	Chr7:66176549-66176568	None:intergenic	30.0%
AAATTTGGAAAACAGCAGAA+TGG	+	Chr7:66175578-66175597	MsG0780039579.01.T01:intron	30.0%
AACAAATCGTTATTGTTCTG+TGG	-	Chr7:66177528-66177547	None:intergenic	30.0%
AACAAGTTCATAAAACAAGC+CGG	-	Chr7:66175204-66175223	None:intergenic	30.0%
AACATATATGCTATAGGGTT+TGG	+	Chr7:66175773-66175792	MsG0780039579.01.T01:intron	30.0%
AACATCTCATTAGTTGTTCA+TGG	+	Chr7:66179130-66179149	MsG0780039579.01.T01:CDS	30.0%
AACTAATACAGTATGGAATC+AGG	+	Chr7:66175548-66175567	MsG0780039579.01.T01:intron	30.0%
AAGACCCAATTATTTATTGC+TGG	+	Chr7:66177642-66177661	MsG0780039579.01.T01:intron	30.0%
AAGCGTCATAATATTCCTAA+AGG	+	Chr7:66176265-66176284	MsG0780039579.01.T01:intron	30.0%
AATGACAGTCTAGTACAATA+AGG	-	Chr7:66177775-66177794	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	66172936	66181892	66172936	ID=MsG0780039579.01;Name=MsG0780039579.01
Chr7	mRNA	66172936	66181892	66172936	ID=MsG0780039579.01.T01;Parent=MsG0780039579.01;Name=MsG0780039579.01.T01;_AED=0.39;_eAED=0.44;_QI=173\|0.55\|0.7\|1\|0.44\|0.6\|10\|463\|463
Chr7	exon	66172936	66173431	66172936	ID=MsG0780039579.01.T01:exon:10473;Parent=MsG0780039579.01.T01
Chr7	exon	66173924	66174068	66173924	ID=MsG0780039579.01.T01:exon:10474;Parent=MsG0780039579.01.T01
Chr7	exon	66174193	66174214	66174193	ID=MsG0780039579.01.T01:exon:10475;Parent=MsG0780039579.01.T01
Chr7	exon	66174317	66174580	66174317	ID=MsG0780039579.01.T01:exon:10476;Parent=MsG0780039579.01.T01
Chr7	exon	66174788	66174975	66174788	ID=MsG0780039579.01.T01:exon:10477;Parent=MsG0780039579.01.T01
Chr7	exon	66177878	66177945	66177878	ID=MsG0780039579.01.T01:exon:10478;Parent=MsG0780039579.01.T01
Chr7	exon	66178524	66178644	66178524	ID=MsG0780039579.01.T01:exon:10479;Parent=MsG0780039579.01.T01
Chr7	exon	66179118	66179183	66179118	ID=MsG0780039579.01.T01:exon:10480;Parent=MsG0780039579.01.T01
Chr7	exon	66179298	66179420	66179298	ID=MsG0780039579.01.T01:exon:10481;Parent=MsG0780039579.01.T01
Chr7	exon	66181358	66181892	66181358	ID=MsG0780039579.01.T01:exon:10482;Parent=MsG0780039579.01.T01
Chr7	five_prime_UTR	66172936	66173108	66172936	ID=MsG0780039579.01.T01:five_prime_utr;Parent=MsG0780039579.01.T01
Chr7	CDS	66173109	66173431	66173109	ID=MsG0780039579.01.T01:cds;Parent=MsG0780039579.01.T01
Chr7	CDS	66173924	66174068	66173924	ID=MsG0780039579.01.T01:cds;Parent=MsG0780039579.01.T01
Chr7	CDS	66174193	66174214	66174193	ID=MsG0780039579.01.T01:cds;Parent=MsG0780039579.01.T01
Chr7	CDS	66174317	66174580	66174317	ID=MsG0780039579.01.T01:cds;Parent=MsG0780039579.01.T01
Chr7	CDS	66174788	66174975	66174788	ID=MsG0780039579.01.T01:cds;Parent=MsG0780039579.01.T01
Chr7	CDS	66177878	66177945	66177878	ID=MsG0780039579.01.T01:cds;Parent=MsG0780039579.01.T01
Chr7	CDS	66178524	66178644	66178524	ID=MsG0780039579.01.T01:cds;Parent=MsG0780039579.01.T01
Chr7	CDS	66179118	66179183	66179118	ID=MsG0780039579.01.T01:cds;Parent=MsG0780039579.01.T01
Chr7	CDS	66179298	66179420	66179298	ID=MsG0780039579.01.T01:cds;Parent=MsG0780039579.01.T01
Chr7	CDS	66181358	66181429	66181358	ID=MsG0780039579.01.T01:cds;Parent=MsG0780039579.01.T01
Chr7	three_prime_UTR	66181430	66181892	66181430	ID=MsG0780039579.01.T01:three_prime_utr;Parent=MsG0780039579.01.T01

Gene Sequence

>MsG0780039579.01.T01

ATGAACAAAATGGGGGGTATCACTAGCAGTGTTGAATCTAATGCGGCGGTGAAGTGGTTGGTCGGAGTTATCATCGTTGGTGTATCAGTATTAGGTTTTTATTCATCTTCTGGGCCATTTGGGTTGTGGAAAAAGAATGGTAGAAGAAGGAATAAAAAACCGATTCGTGTTTATATGGATGGTTGTTTTGATATGATGCATTATGGTCATTGTAATGCTTTGCGTCAAGCTCGTGCTCTTGGTGATCAATTGATTGTTGGTGTTGTTAGTGATGATGAAATTATTGCTAATAAGGGTCCTCCTGTTACCCCTTTACATGAAAGGTGGTTTGAACATGTAGAAAGATTTGTAGATTCTGTACTAAGGAGAGTAGATCAGATGGAGTTTAGCCGGATCACTAGAGATAGAGGAAGACCTAGAAAAACTATTAAGAAAGATTTAGAGATTAATGAGATGAACCTAAATATGGATAGAACATTTTACCCTGATAATGTTGATTATGGTGATGTGTGTGACAGGTTGATTATGGTGAATGCTGTGAAATGGGTTGATGAGGTTATTCCTGAAGCTCCATATGCCATTACTGAGGAATTCATGAAGAAGCTTTTCGATGAGTATAATATAGATTACATTATTCATGGGGATGATCCTTGTGTTCTACCTGATGGAACTGATGCTTATGCTCATGCCAAAAAGGCTGGCCGTTATAAACAGATAAAGCGCACGGAAGGAGTTTCCAGCACTGATATTGTTGGTCGAATGCTTCTCTGTGTAAGAGAAAGGAATATTGCCGACACTCATAATCATTCTTCTTTACAAAGACAGTTCAGCAATGGCCGGGGTCAGCAGAAGTTTGAAGACGGTGGTGTTGTTGCTAGTGGAACCCGTGTATCTCATTTTCTGCCTACATCTCGTAGAATTGTTCAGTTCTCAAACGGGAGGATCCTGAGGCTTGCCAGGGATCGTGGAGATTTTCTTCTTGTTGGAATACACACGGACCAGACAGTCAGTGCAACTAGGGGATTGCATCGTCCCATCATGAGCCTTCATGAAAGAAGTCTAAGTGTGCTAGCATGTCGCTATGTGGATGAGGTTATAATTGGTGCACCATGGGAAGTGTCCAAGGATATGATCACAACATTTAACATCTCATTAGTTGTTCATGGAACAACTGCAGAGAATACTGATTTTCAGAAGGAACAATCAAATCCATATGCCGTTCCCAGTAGCTTGGGCATCTTCCAAATTTTAGATAGTCCTTTAGATATAACAACTACTACAATAATTAGGAGGATTGTATCAAATCACGAGGCATACCAGAAACGCAATGAGAAGAAGGGTGAAAGTGAGAAAAAATACTATGAGAGCAAGACTCACGTGTCTGGAGACTGA

Protein sequence

>MsG0780039579.01.T01

MNKMGGITSSVESNAAVKWLVGVIIVGVSVLGFYSSSGPFGLWKKNGRRRNKKPIRVYMDGCFDMMHYGHCNALRQARALGDQLIVGVVSDDEIIANKGPPVTPLHERWFEHVERFVDSVLRRVDQMEFSRITRDRGRPRKTIKKDLEINEMNLNMDRTFYPDNVDYGDVCDRLIMVNAVKWVDEVIPEAPYAITEEFMKKLFDEYNIDYIIHGDDPCVLPDGTDAYAHAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERNIADTHNHSSLQRQFSNGRGQQKFEDGGVVASGTRVSHFLPTSRRIVQFSNGRILRLARDRGDFLLVGIHTDQTVSATRGLHRPIMSLHERSLSVLACRYVDEVIIGAPWEVSKDMITTFNISLVVHGTTAENTDFQKEQSNPYAVPSSLGIFQILDSPLDITTTTIIRRIVSNHEAYQKRNEKKGESEKKYYESKTHVSGD*