AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045656.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045656.01.T01 MTR_8g076070 98.361 122 2 0 83 204 1 122 7.05e-86 249
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045656.01.T01 AT2G18040 77.876 113 25 0 91 203 6 118 1.69e-62 190
MsG0880045656.01.T01 AT1G26550 47.458 59 31 0 142 200 77 135 9.47e-12 60.8

Find 41 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAAGAGGATATCCTTTC+TGG 0.182475 8:+62232557 MsG0880045656.01.T01:CDS
CTTGGTATTTAGCAATTTAT+AGG 0.199680 8:-62232249 None:intergenic
GGACCGACATCGAGGTTATC+TGG 0.269970 8:-62232224 None:intergenic
TTCTTGGCTGTAGGTCCTTT+TGG 0.284324 8:+62235990 MsG0880045656.01.T01:intron
CGAAGCAAGATCCTCAAATT+TGG 0.289474 8:-62232585 None:intergenic
TTAGTTGAATCTTGCGGTTC+AGG 0.300806 8:-62232191 None:intergenic
CTCGCGGCGGCGCTGAGGTT+AGG 0.301148 8:+62232417 MsG0880045656.01.T01:CDS
TTCTTGATGACGTAACCTTC+TGG 0.327996 8:-62232497 None:intergenic
CTTCAAAAGGCTTCTGCATC+TGG 0.328903 8:-62236019 None:intergenic
GCTAAACGCGGTGGCGATCT+TGG 0.368998 8:+62232629 MsG0880045656.01.T01:CDS
AATTTGTTCTCTTGATTATG+TGG 0.388827 8:-62236103 None:intergenic
TCGCGGCGGCGCTGAGGTTA+GGG 0.411373 8:+62232418 MsG0880045656.01.T01:CDS
TTCTGGTAAGGCCAAATTTG+AGG 0.428366 8:+62232574 MsG0880045656.01.T01:CDS
CAAATTTGGCCTTACCAGAA+AGG 0.448271 8:-62232571 None:intergenic
TATTCTTACTTCAATGAAAG+AGG 0.454286 8:+62232544 MsG0880045656.01.T01:CDS
GCATAAGTTGCATCTTCAAA+AGG 0.464113 8:-62236032 None:intergenic
TGCATCTGGCCACGACCAAA+AGG 0.471277 8:-62236005 None:intergenic
GTATTTAGCAATTTATAGGT+TGG 0.480303 8:-62232245 None:intergenic
GACCGACATCGAGGTTATCT+GGG 0.489965 8:-62232223 None:intergenic
GCAACTTATGCTCTTCAAGT+TGG 0.495197 8:+62236044 MsG0880045656.01.T01:CDS
ATCAATTTCGTCGGCGACGG+CGG 0.499635 8:+62232346 MsG0880045656.01.T01:CDS
ATTTGTTCTCTTGATTATGT+GGG 0.511033 8:-62236102 None:intergenic
AGTTAACTCGCGAATCTGCT+TGG 0.527232 8:-62232267 None:intergenic
AGAGGATATCCTTTCTGGTA+AGG 0.533949 8:+62232562 MsG0880045656.01.T01:CDS
AACATCAATTTCGTCGGCGA+CGG 0.538566 8:+62232343 MsG0880045656.01.T01:CDS
AATTTGAGGATCTTGCTTCG+AGG 0.550226 8:+62232588 MsG0880045656.01.T01:CDS
GTTCTAGAAGAAAAGCTTCG+TGG 0.556909 8:+62232468 MsG0880045656.01.T01:CDS
TTCATCTCGCGGCGGCGCTG+AGG 0.579649 8:+62232412 MsG0880045656.01.T01:CDS
TGGTGAAATTAGTGACATTG+TGG 0.589271 8:+62236064 MsG0880045656.01.T01:CDS
CATTGAAGTAAGAATAGCAA+CGG 0.597353 8:-62232537 None:intergenic
AAAGAAAACATCAATTTCGT+CGG 0.601646 8:+62232337 MsG0880045656.01.T01:CDS
TGAGTTTCATTACACAGTGA+CGG 0.609834 8:+62232289 MsG0880045656.01.T01:CDS
GCGAAAATGTCTTCATCTCG+CGG 0.645162 8:+62232401 MsG0880045656.01.T01:CDS
CACATACTGATTAAACACGA+AGG 0.672969 8:+62232446 MsG0880045656.01.T01:CDS
GACCCAGATAACCTCGATGT+CGG 0.673083 8:+62232221 MsG0880045656.01.T01:CDS
GACATTGTGGATAGTGACAG+TGG 0.676092 8:+62236077 MsG0880045656.01.T01:CDS
TGTAGCTCTGCTAAACGCGG+TGG 0.678782 8:+62232620 MsG0880045656.01.T01:CDS
GATTGTAGCTCTGCTAAACG+CGG 0.692633 8:+62232617 MsG0880045656.01.T01:CDS
GCTTCGTGGAAAGATCCAGA+AGG 0.706542 8:+62232482 MsG0880045656.01.T01:CDS
TATAGGTTGGACCGACATCG+AGG 0.714981 8:-62232232 None:intergenic
AAAATGTCTTCATCTCGCGG+CGG 0.772656 8:+62232404 MsG0880045656.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTGATTAAAATTCAAAAT+GGG - Chr8:62235822-62235841 None:intergenic 10.0%
!! AAAGTAACAAAAAAACTTAA+GGG - Chr8:62235306-62235325 None:intergenic 15.0%
!! ATATGAAAAAATGAATTAGT+TGG + Chr8:62232895-62232914 MsG0880045656.01.T01:intron 15.0%
!!! GTATTGATTAAAATTCAAAA+TGG - Chr8:62235823-62235842 None:intergenic 15.0%
!!! TTGAATTTTAATCAATACAA+GGG + Chr8:62235825-62235844 MsG0880045656.01.T01:intron 15.0%
!!! TTTGAATTTTAATCAATACA+AGG + Chr8:62235824-62235843 MsG0880045656.01.T01:intron 15.0%
!! AATTTCTTGTCAAAGTAATT+TGG + Chr8:62235212-62235231 MsG0880045656.01.T01:intron 20.0%
!! GAAAGTAACAAAAAAACTTA+AGG - Chr8:62235307-62235326 None:intergenic 20.0%
!! TGTAATTTACTAGAAAGTAA+TGG + Chr8:62235069-62235088 MsG0880045656.01.T01:intron 20.0%
!!! TTACTTTCTAGTAAATTACA+AGG - Chr8:62235069-62235088 None:intergenic 20.0%
!!! TTTTTTCAGTTGAACTAAAA+TGG + Chr8:62235962-62235981 MsG0880045656.01.T01:intron 20.0%
! AAAGAAAACATCAATTTCGT+CGG + Chr8:62232337-62232356 MsG0880045656.01.T01:CDS 25.0%
! AAATGGGTCTCAAATAAATT+TGG - Chr8:62235806-62235825 None:intergenic 25.0%
! ACAAGATTATGATTGTCATA+TGG + Chr8:62235125-62235144 MsG0880045656.01.T01:intron 25.0%
! AGAACTAGAATGTAATGTTT+AGG - Chr8:62235364-62235383 None:intergenic 25.0%
! ATTGAAATTAGTAGAAACTG+TGG + Chr8:62232822-62232841 MsG0880045656.01.T01:intron 25.0%
! ATTTGTTCTCTTGATTATGT+GGG - Chr8:62236105-62236124 None:intergenic 25.0%
! CTCAACTAAATATCAATCAT+TGG - Chr8:62235778-62235797 None:intergenic 25.0%
! CTTGGTATTTAGCAATTTAT+AGG - Chr8:62232252-62232271 None:intergenic 25.0%
! GATAAGAGTTTATATAGAAG+AGG - Chr8:62234770-62234789 None:intergenic 25.0%
! GGTTATGTAAAATGAATTCA+AGG - Chr8:62235699-62235718 None:intergenic 25.0%
! GTATTTAGCAATTTATAGGT+TGG - Chr8:62232248-62232267 None:intergenic 25.0%
! TATTCTTACTTCAATGAAAG+AGG + Chr8:62232544-62232563 MsG0880045656.01.T01:CDS 25.0%
! TTGAAATTAGTAGAAACTGT+GGG + Chr8:62232823-62232842 MsG0880045656.01.T01:intron 25.0%
! TTGACAAGAAATTTGTAAGT+TGG - Chr8:62235205-62235224 None:intergenic 25.0%
! TTGTCATATGGATCTTAATT+TGG + Chr8:62235137-62235156 MsG0880045656.01.T01:intron 25.0%
! TTTACTAGAAAGTAATGGTT+TGG + Chr8:62235074-62235093 MsG0880045656.01.T01:intron 25.0%
!! AATTTGTTCTCTTGATTATG+TGG - Chr8:62236106-62236125 None:intergenic 25.0%
!! AGTTATTGTGTTACTGTTAT+TGG + Chr8:62232754-62232773 MsG0880045656.01.T01:intron 25.0%
!! ATGTTACTAGCATTTCTTTT+AGG - Chr8:62235724-62235743 None:intergenic 25.0%
!! GTTTTTGAATTGGATTATGA+GGG + Chr8:62232693-62232712 MsG0880045656.01.T01:intron 25.0%
!!! AAATTTGTAAGTTGGTTGAT+AGG - Chr8:62235197-62235216 None:intergenic 25.0%
!!! TGTTTTTGAATTGGATTATG+AGG + Chr8:62232692-62232711 MsG0880045656.01.T01:intron 25.0%
CATTGAAGTAAGAATAGCAA+CGG - Chr8:62232540-62232559 None:intergenic 30.0%
CTGATACCATGTTGAAATTT+GGG + Chr8:62234701-62234720 MsG0880045656.01.T01:intron 30.0%
GAATGTGTAATCAATCCTTT+AGG - Chr8:62235901-62235920 None:intergenic 30.0%
GTTGAAAATAATATGCTGAG+TGG - Chr8:62235747-62235766 None:intergenic 30.0%
TAATTTGGTTGTAGTTGTGA+TGG + Chr8:62235152-62235171 MsG0880045656.01.T01:intron 30.0%
TATTCTGCCTAAGAAAGAAT+AGG + Chr8:62235101-62235120 MsG0880045656.01.T01:intron 30.0%
TCTGATACCATGTTGAAATT+TGG + Chr8:62234700-62234719 MsG0880045656.01.T01:intron 30.0%
TCTTGTACCTATTCTTTCTT+AGG - Chr8:62235111-62235130 None:intergenic 30.0%
TGATACCATGTTGAAATTTG+GGG + Chr8:62234702-62234721 MsG0880045656.01.T01:intron 30.0%
TTAGGCAAATACAACATTGT+TGG + Chr8:62235538-62235557 MsG0880045656.01.T01:intron 30.0%
! AACTAAAATGGTCACTTTCT+TGG + Chr8:62235974-62235993 MsG0880045656.01.T01:intron 30.0%
! TATTGTGTTACTGTTATTGG+TGG + Chr8:62232757-62232776 MsG0880045656.01.T01:intron 30.0%
! TGTTTTCTTTCTCTTACGAT+CGG - Chr8:62232327-62232346 None:intergenic 30.0%
! TTACTAGCATTTCTTTTAGG+AGG - Chr8:62235721-62235740 None:intergenic 30.0%
!! AATCAATCCTTTAGGATTAG+AGG - Chr8:62235893-62235912 None:intergenic 30.0%
!! ATCAATCCTTTAGGATTAGA+GGG - Chr8:62235892-62235911 None:intergenic 30.0%
!! ATTGGTTTGGTTGTTATTTG+AGG + Chr8:62235022-62235041 MsG0880045656.01.T01:intron 30.0%
!! TACTAGCATTTCTTTTAGGA+GGG - Chr8:62235720-62235739 None:intergenic 30.0%
!! TGTTGTGATGGAATTTTTGT+TGG + Chr8:62235472-62235491 MsG0880045656.01.T01:intron 30.0%
!! TTGGTTTGGTTGTTATTTGA+GGG + Chr8:62235023-62235042 MsG0880045656.01.T01:intron 30.0%
!! TTTGAACAATTTTAGCCCTA+GGG + Chr8:62235248-62235267 MsG0880045656.01.T01:intron 30.0%
!! TTTTGAACAATTTTAGCCCT+AGG + Chr8:62235247-62235266 MsG0880045656.01.T01:intron 30.0%
!!! TTCGTTTTAGTTGAATCTTG+CGG - Chr8:62232200-62232219 None:intergenic 30.0%
AAACTCATTCAACTACCCTA+GGG - Chr8:62232730-62232749 None:intergenic 35.0%
ATAATGTCACCACTATTGTC+AGG + Chr8:62234886-62234905 MsG0880045656.01.T01:intron 35.0%
ATCGCGTAAAATAGCAATCT+GGG - Chr8:62234988-62235007 None:intergenic 35.0%
ATGAAAGAGGATATCCTTTC+TGG + Chr8:62232557-62232576 MsG0880045656.01.T01:CDS 35.0%
CTAACTCATCCTTACAAAAC+CGG + Chr8:62234726-62234745 MsG0880045656.01.T01:intron 35.0%
CTTAAGAAACATTACGGGAA+AGG - Chr8:62235280-62235299 None:intergenic 35.0%
GAATTCAAGGTACACCATAT+CGG - Chr8:62235686-62235705 None:intergenic 35.0%
GACTGAACAATATGTTGTGA+TGG + Chr8:62235460-62235479 MsG0880045656.01.T01:intron 35.0%
GCATAAGTTGCATCTTCAAA+AGG - Chr8:62236035-62236054 None:intergenic 35.0%
GGATGCTTAAGAAACATTAC+GGG - Chr8:62235285-62235304 None:intergenic 35.0%
GGGATGCTTAAGAAACATTA+CGG - Chr8:62235286-62235305 None:intergenic 35.0%
GGGTCTCAAATAAATTTGGT+GGG - Chr8:62235802-62235821 None:intergenic 35.0%
GTGAATTATTTAGCTACCCT+TGG - Chr8:62235396-62235415 None:intergenic 35.0%
TAAACTCATTCAACTACCCT+AGG - Chr8:62232731-62232750 None:intergenic 35.0%
TGAAAGATCAGCTGTATTGA+TGG - Chr8:62235595-62235614 None:intergenic 35.0%
TGACATTATACCACTTAGGT+TGG - Chr8:62234875-62234894 None:intergenic 35.0%
TGAGTTTCATTACACAGTGA+CGG + Chr8:62232289-62232308 MsG0880045656.01.T01:CDS 35.0%
TGCAAAATGTTGTCACATTG+TGG + Chr8:62234924-62234943 MsG0880045656.01.T01:intron 35.0%
TGGGTCTCAAATAAATTTGG+TGG - Chr8:62235803-62235822 None:intergenic 35.0%
TGGTGAAATTAGTGACATTG+TGG + Chr8:62236064-62236083 MsG0880045656.01.T01:CDS 35.0%
TGTCGAAATAGAAGCTAAAG+TGG + Chr8:62234441-62234460 MsG0880045656.01.T01:intron 35.0%
! AGGGAATTTTGTTAACCCTA+GGG + Chr8:62232712-62232731 MsG0880045656.01.T01:intron 35.0%
! CACATACTGATTAAACACGA+AGG + Chr8:62232446-62232465 MsG0880045656.01.T01:CDS 35.0%
! TAGTTCTATCCTTCTACCAA+GGG + Chr8:62235377-62235396 MsG0880045656.01.T01:intron 35.0%
!! GTGTGAGTGTGTTTTTGAAT+TGG + Chr8:62232683-62232702 MsG0880045656.01.T01:intron 35.0%
!! TCAATCCTTTAGGATTAGAG+GGG - Chr8:62235891-62235910 None:intergenic 35.0%
!! TGTAAGCTAGCATTAGCTTT+AGG + Chr8:62235520-62235539 MsG0880045656.01.T01:intron 35.0%
!! TTGAACAATTTTAGCCCTAG+GGG + Chr8:62235249-62235268 MsG0880045656.01.T01:intron 35.0%
AAAAAACCCAAGTCCCACAT+CGG - Chr8:62234604-62234623 None:intergenic 40.0%
AATTTGAGGATCTTGCTTCG+AGG + Chr8:62232588-62232607 MsG0880045656.01.T01:CDS 40.0%
ATCAGAGCTTGTCGAATTCA+AGG - Chr8:62234686-62234705 None:intergenic 40.0%
ATTGCATCACCTGACAATAG+TGG - Chr8:62234898-62234917 None:intergenic 40.0%
ATTTAGCTACCCTTGGTAGA+AGG - Chr8:62235389-62235408 None:intergenic 40.0%
CGAAATAGAAGCTAAAGTGG+TGG + Chr8:62234444-62234463 MsG0880045656.01.T01:intron 40.0%
CGAAGCAAGATCCTCAAATT+TGG - Chr8:62232588-62232607 None:intergenic 40.0%
CTAACTCATCCTTACCAAAC+CGG + Chr8:62234522-62234541 MsG0880045656.01.T01:intron 40.0%
GAAGCTAAAGTGGTGGTATA+AGG + Chr8:62234451-62234470 MsG0880045656.01.T01:intron 40.0%
GATCGCGTAAAATAGCAATC+TGG - Chr8:62234989-62235008 None:intergenic 40.0%
GCAACTTATGCTCTTCAAGT+TGG + Chr8:62236044-62236063 MsG0880045656.01.T01:CDS 40.0%
GTGGTGACATTATACCACTT+AGG - Chr8:62234879-62234898 None:intergenic 40.0%
TAATTCCTAGACCTCCGATA+TGG + Chr8:62235669-62235688 MsG0880045656.01.T01:intron 40.0%
TCAGAGCTTGTCGAATTCAA+GGG - Chr8:62234685-62234704 None:intergenic 40.0%
TTAGGCCCCAAATTTCAACA+TGG - Chr8:62234710-62234729 None:intergenic 40.0%
TTAGTTGAATCTTGCGGTTC+AGG - Chr8:62232194-62232213 None:intergenic 40.0%
TTCTGGTAAGGCCAAATTTG+AGG + Chr8:62232574-62232593 MsG0880045656.01.T01:CDS 40.0%
TTTGCGCGAAACTGAAAATG+TGG + Chr8:62235616-62235635 MsG0880045656.01.T01:intron 40.0%
! AGAGGATATCCTTTCTGGTA+AGG + Chr8:62232562-62232581 MsG0880045656.01.T01:CDS 40.0%
! AGAGTCTTATCTATCCGATG+TGG + Chr8:62234587-62234606 MsG0880045656.01.T01:intron 40.0%
! CAAACCAATATTGTCGACTG+TGG - Chr8:62235011-62235030 None:intergenic 40.0%
! CACAGTCGACAATATTGGTT+TGG + Chr8:62235009-62235028 MsG0880045656.01.T01:intron 40.0%
! GAGGGAATTTTGTTAACCCT+AGG + Chr8:62232711-62232730 MsG0880045656.01.T01:intron 40.0%
! GAGTCTTATCTATCCGATGT+GGG + Chr8:62234588-62234607 MsG0880045656.01.T01:intron 40.0%
! TTAGTAGAAACTGTGGGCTA+AGG + Chr8:62232829-62232848 MsG0880045656.01.T01:intron 40.0%
!! ATCGGAGGGGTGTTTAAATT+TGG + Chr8:62234496-62234515 MsG0880045656.01.T01:intron 40.0%
!! CAAATTTGGCCTTACCAGAA+AGG - Chr8:62232574-62232593 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - Chr8:62234728-62234747 None:intergenic 40.0%
!! CTAGTTCTATCCTTCTACCA+AGG + Chr8:62235376-62235395 MsG0880045656.01.T01:intron 40.0%
!! GTTCTAGAAGAAAAGCTTCG+TGG + Chr8:62232468-62232487 MsG0880045656.01.T01:CDS 40.0%
!! TCGGAGGGGTGTTTAAATTT+GGG + Chr8:62234497-62234516 MsG0880045656.01.T01:intron 40.0%
!! TGGCTTGATGGTATTGACTT+GGG - Chr8:62234855-62234874 None:intergenic 40.0%
!! TTCTTGATGACGTAACCTTC+TGG - Chr8:62232500-62232519 None:intergenic 40.0%
!! TTGAGGGATTCGTTTTTGCT+TGG + Chr8:62235039-62235058 MsG0880045656.01.T01:intron 40.0%
!! TTGGCTTGATGGTATTGACT+TGG - Chr8:62234856-62234875 None:intergenic 40.0%
AAAATGTCTTCATCTCGCGG+CGG + Chr8:62232404-62232423 MsG0880045656.01.T01:CDS 45.0%
AACATCAATTTCGTCGGCGA+CGG + Chr8:62232343-62232362 MsG0880045656.01.T01:CDS 45.0%
AGTTAACTCGCGAATCTGCT+TGG - Chr8:62232270-62232289 None:intergenic 45.0%
ATCACATGTGTCAGTGTCAG+AGG + Chr8:62234405-62234424 MsG0880045656.01.T01:intron 45.0%
ATCTATCCGATGTGGGACTT+GGG + Chr8:62234595-62234614 MsG0880045656.01.T01:intron 45.0%
CACCTAAATTGACATCGGAG+GGG + Chr8:62234483-62234502 MsG0880045656.01.T01:intron 45.0%
CAGCCCACCTAAATTGACAT+CGG + Chr8:62234478-62234497 MsG0880045656.01.T01:intron 45.0%
CCACCTAAATTGACATCGGA+GGG + Chr8:62234482-62234501 MsG0880045656.01.T01:intron 45.0%
CCTCCGATGTCAATTTAGGT+GGG - Chr8:62234484-62234503 None:intergenic 45.0%
CGATCCACAGTCGACAATAT+TGG + Chr8:62235004-62235023 MsG0880045656.01.T01:intron 45.0%
CTTCAAAAGGCTTCTGCATC+TGG - Chr8:62236022-62236041 None:intergenic 45.0%
GAAAAACCCAAGTCCCACAT+CGG - Chr8:62234808-62234827 None:intergenic 45.0%
GACATTGTGGATAGTGACAG+TGG + Chr8:62236077-62236096 MsG0880045656.01.T01:CDS 45.0%
GCGAAAATGTCTTCATCTCG+CGG + Chr8:62232401-62232420 MsG0880045656.01.T01:CDS 45.0%
TACCATCAAGCCAACCTAAG+TGG + Chr8:62234862-62234881 MsG0880045656.01.T01:intron 45.0%
TAGCACCCCTCTAATCCTAA+AGG + Chr8:62235883-62235902 MsG0880045656.01.T01:intron 45.0%
TATCTATCCGATGTGGGACT+TGG + Chr8:62234594-62234613 MsG0880045656.01.T01:intron 45.0%
TCACATGTGTCAGTGTCAGA+GGG + Chr8:62234406-62234425 MsG0880045656.01.T01:intron 45.0%
TGGACTTCTTGATGTTGCTG+TGG + Chr8:62235492-62235511 MsG0880045656.01.T01:intron 45.0%
TTCAAGGTACACCATATCGG+AGG - Chr8:62235683-62235702 None:intergenic 45.0%
TTGTCACATTGTGGCTGTAG+TGG + Chr8:62234933-62234952 MsG0880045656.01.T01:intron 45.0%
! ATGGTCACTTTCTTGGCTGT+AGG + Chr8:62235981-62236000 MsG0880045656.01.T01:intron 45.0%
! GATTGTAGCTCTGCTAAACG+CGG + Chr8:62232617-62232636 MsG0880045656.01.T01:CDS 45.0%
! TTCTTGGCTGTAGGTCCTTT+TGG + Chr8:62235990-62236009 MsG0880045656.01.T01:intron 45.0%
!! ATGGTATTGACTTGGGACCT+GGG - Chr8:62234848-62234867 None:intergenic 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + Chr8:62234735-62234754 MsG0880045656.01.T01:intron 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - Chr8:62234738-62234757 None:intergenic 45.0%
!! CGGAGGGGTGTTTAAATTTG+GGG + Chr8:62234498-62234517 MsG0880045656.01.T01:intron 45.0%
!! CGGTTTGGTAAGGATGAGTT+AGG - Chr8:62234524-62234543 None:intergenic 45.0%
!! TACCACTTAGGTTGGCTTGA+TGG - Chr8:62234867-62234886 None:intergenic 45.0%
ACAATCCTCGCCTTACAAGC+CGG - Chr8:62234544-62234563 None:intergenic 50.0%
CACCCCTCCGATGTCAATTT+AGG - Chr8:62234488-62234507 None:intergenic 50.0%
CCCACCTAAATTGACATCGG+AGG + Chr8:62234481-62234500 MsG0880045656.01.T01:intron 50.0%
CCCTCCGATGTCAATTTAGG+TGG - Chr8:62234485-62234504 None:intergenic 50.0%
CGATGTCAATTTAGGTGGGC+TGG - Chr8:62234480-62234499 None:intergenic 50.0%
GACCCAGATAACCTCGATGT+CGG + Chr8:62232221-62232240 MsG0880045656.01.T01:CDS 50.0%
GACCGACATCGAGGTTATCT+GGG - Chr8:62232226-62232245 None:intergenic 50.0%
GCAATCCTCACCTTACAAGC+CGG - Chr8:62234748-62234767 None:intergenic 50.0%
GCTTCGTGGAAAGATCCAGA+AGG + Chr8:62232482-62232501 MsG0880045656.01.T01:CDS 50.0%
GTACACCATATCGGAGGTCT+AGG - Chr8:62235677-62235696 None:intergenic 50.0%
! GACTTGGGTTTTTCTCGAGG+AGG + Chr8:62234814-62234833 MsG0880045656.01.T01:intron 50.0%
! TATAGGTTGGACCGACATCG+AGG - Chr8:62232235-62232254 None:intergenic 50.0%
! TGGGACTTGGGTTTTTCTCG+AGG + Chr8:62234811-62234830 MsG0880045656.01.T01:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + Chr8:62234740-62234759 MsG0880045656.01.T01:intron 50.0%
!! CCTTACAAGCCGGTTTGGTA+AGG - Chr8:62234534-62234553 None:intergenic 50.0%
!! CCTTACCAAACCGGCTTGTA+AGG + Chr8:62234531-62234550 MsG0880045656.01.T01:intron 50.0%
!! GATGGTATTGACTTGGGACC+TGG - Chr8:62234849-62234868 None:intergenic 50.0%
!! TTTGGGCTTGGTGCGTGAAT+CGG + Chr8:62234652-62234671 MsG0880045656.01.T01:intron 50.0%
ACTCCAGCACTCTTTGGGCT+TGG + Chr8:62234640-62234659 MsG0880045656.01.T01:intron 55.0%
ATCAATTTCGTCGGCGACGG+CGG + Chr8:62232346-62232365 MsG0880045656.01.T01:CDS 55.0%
CCGTCACTCCAGCACTCTTT+GGG + Chr8:62234635-62234654 MsG0880045656.01.T01:intron 55.0%
GGACCGACATCGAGGTTATC+TGG - Chr8:62232227-62232246 None:intergenic 55.0%
TGCATCTGGCCACGACCAAA+AGG - Chr8:62236008-62236027 None:intergenic 55.0%
TTGGTGCGTGAATCGGTAGG+TGG + Chr8:62234659-62234678 MsG0880045656.01.T01:intron 55.0%
! GCTGTAGGTCCTTTTGGTCG+TGG + Chr8:62235996-62236015 MsG0880045656.01.T01:intron 55.0%
! TGTAGCTCTGCTAAACGCGG+TGG + Chr8:62232620-62232639 MsG0880045656.01.T01:CDS 55.0%
!! AAAGAGTGCTGGAGTGACGG+GGG - Chr8:62234635-62234654 None:intergenic 55.0%
!! CAAAGAGTGCTGGAGTGACG+GGG - Chr8:62234636-62234655 None:intergenic 55.0%
!! CCAAAGAGTGCTGGAGTGAC+GGG - Chr8:62234637-62234656 None:intergenic 55.0%
!! CCCAAAGAGTGCTGGAGTGA+CGG - Chr8:62234638-62234657 None:intergenic 55.0%
CCCGTCACTCCAGCACTCTT+TGG + Chr8:62234634-62234653 MsG0880045656.01.T01:intron 60.0%
CCTCGCCTTACAAGCCGGTT+TGG - Chr8:62234539-62234558 None:intergenic 60.0%
GCTAAACGCGGTGGCGATCT+TGG + Chr8:62232629-62232648 MsG0880045656.01.T01:CDS 60.0%
TCGAGGAGGAGCAAACTCCC+AGG + Chr8:62234828-62234847 MsG0880045656.01.T01:intron 60.0%
! CTGGAGTGACGGGGGTGTAT+TGG - Chr8:62234627-62234646 None:intergenic 60.0%
! GCACCAAGCCCAAAGAGTGC+TGG - Chr8:62234646-62234665 None:intergenic 60.0%
!! CCAAACCGGCTTGTAAGGCG+AGG + Chr8:62234536-62234555 MsG0880045656.01.T01:intron 60.0%
!! GGCTTGGTGCGTGAATCGGT+AGG + Chr8:62234656-62234675 MsG0880045656.01.T01:intron 60.0%
ACGGGAAAGGCAGCACCCCT+AGG - Chr8:62235267-62235286 None:intergenic 65.0%
CGGGAAAGGCAGCACCCCTA+GGG - Chr8:62235266-62235285 None:intergenic 65.0%
TTCATCTCGCGGCGGCGCTG+AGG + Chr8:62232412-62232431 MsG0880045656.01.T01:CDS 70.0%
! TCGCGGCGGCGCTGAGGTTA+GGG + Chr8:62232418-62232437 MsG0880045656.01.T01:CDS 70.0%
! CTCGCGGCGGCGCTGAGGTT+AGG + Chr8:62232417-62232436 MsG0880045656.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr8 gene 62232161 62236127 62232161 ID=MsG0880045656.01;Name=MsG0880045656.01
Chr8 mRNA 62232161 62236127 62232161 ID=MsG0880045656.01.T01;Parent=MsG0880045656.01;Name=MsG0880045656.01.T01;_AED=0.50;_eAED=0.69;_QI=0|0|0|1|1|1|2|0|204
Chr8 exon 62232161 62232650 62232161 ID=MsG0880045656.01.T01:exon:23794;Parent=MsG0880045656.01.T01
Chr8 exon 62236003 62236127 62236003 ID=MsG0880045656.01.T01:exon:23795;Parent=MsG0880045656.01.T01
Chr8 CDS 62232161 62232650 62232161 ID=MsG0880045656.01.T01:cds;Parent=MsG0880045656.01.T01
Chr8 CDS 62236003 62236127 62236003 ID=MsG0880045656.01.T01:cds;Parent=MsG0880045656.01.T01
Gene Sequence

>MsG0880045656.01.T01

TTGAAATCACATACAGTAAGCTACATTCATCCTGAACCGCAAGATTCAACTAAAACGAACGACCCAGATAACCTCGATGTCGGTCCAACCTATAAATTGCTAAATACCAAGCAGATTCGCGAGTTAACTGAGTTTCATTACACAGTGACGGCGAAGATAGATTCCGATCGTAAGAGAAAGAAAACATCAATTTCGTCGGCGACGGCGGAAGAAGAAAAGCGAAACAAGAAGAAGAAAGAAGCGAAAATGTCTTCATCTCGCGGCGGCGCTGAGGTTAGGGCTTCACACATACTGATTAAACACGAAGGTTCTAGAAGAAAAGCTTCGTGGAAAGATCCAGAAGGTTACGTCATCAAGAACACTACTCGTGAAAGTGCCGTTGCTATTCTTACTTCAATGAAAGAGGATATCCTTTCTGGTAAGGCCAAATTTGAGGATCTTGCTTCGAGGTATTCTGATTGTAGCTCTGCTAAACGCGGTGGCGATCTTGGTCCTTTTGGTCGTGGCCAGATGCAGAAGCCTTTTGAAGATGCAACTTATGCTCTTCAAGTTGGTGAAATTAGTGACATTGTGGATAGTGACAGTGGATCCCACATAATCAAGAGAACAAATTGA

Protein sequence

>MsG0880045656.01.T01

LKSHTVSYIHPEPQDSTKTNDPDNLDVGPTYKLLNTKQIRELTEFHYTVTAKIDSDRKRKKTSISSATAEEEKRNKKKKEAKMSSSRGGAEVRASHILIKHEGSRRKASWKDPEGYVIKNTTRESAVAILTSMKEDILSGKAKFEDLASRYSDCSSAKRGGDLGPFGRGQMQKPFEDATYALQVGEISDIVDSDSGSHIIKRTN*