AlfalfaGEDB | MsG0580024339.01

M. sativa cultivar ZhongmuNo.1 / MsG0580024339.01

KEGG: K11979
GO: GO:0008270
PFAM: PF02207

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024339.01.T01	XP_003610986.1	97.362	417	11	0	1	417	1	417	0	840

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024339.01.T01	Q8N806	36.79	405	216	14	29	415	33	415	1.25E-73	239

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024339.01.T01	G7K9B9	97.362	417	11	0	1	417	1	417	0.0	840

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0580024339.01	0.817259	3.617982e-52	2.621793e-49
MsG0080048152.01	MsG0580024339.01	0.803903	2.791743e-49	1.419850e-46
MsG0080048383.01	MsG0580024339.01	0.865229	6.869258e-65	2.218295e-61
MsG0080048687.01	MsG0580024339.01	0.861472	1.001475e-63	2.837156e-60
MsG0080048815.01	MsG0580024339.01	0.806929	6.477315e-50	3.560403e-47
MsG0080048855.01	MsG0580024339.01	0.833573	4.935413e-56	5.706445e-53
MsG0080049135.01	MsG0580024339.01	0.800211	1.602919e-48	7.420763e-46
MsG0180000001.01	MsG0580024339.01	0.826536	2.570878e-54	2.417664e-51
MsG0180000101.01	MsG0580024339.01	0.849291	3.553642e-60	6.705182e-57
MsG0180000144.01	MsG0580024339.01	0.841030	6.084255e-58	8.826303e-55

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024339.01.T01	MTR_5g009240	97.362	417	11	0	1	417	1	417	0.0	840

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580024339.01.T01	AT4G23860	52.339	449	176	8	4	416	5	451	2.18e-160	459
MsG0580024339.01.T01	AT4G23860	52.339	449	176	8	4	416	5	451	2.18e-160	459
MsG0580024339.01.T01	AT4G23860	52.339	449	176	8	4	416	5	451	2.18e-160	459
MsG0580024339.01.T01	AT4G23860	51.733	404	158	7	49	416	1	403	1.57e-141	410

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Find 120 sgRNAs with CRISPR-Local

Find 390 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTCCAGCATTCCCATCA+GGG	0.605816	5:-3547094	None:intergenic
AACTCAACAGTTTGCAAGTT+AGG	0.303184	5:-3549788	None:intergenic
AACTCCAGCATTCCCATCAG+GGG	0.637076	5:-3547093	None:intergenic
AAGAATAAGCGGCGCCGTGT+AGG	0.430018	5:+3549725	MsG0580024339.01.T01:CDS
AAGACATGCCTTCAACTTGT+GGG	0.485778	5:+3548968	MsG0580024339.01.T01:CDS
AAGGTACTCGCCGAGCGTAA+CGG	0.517432	5:-3545384	None:intergenic
AATAGCAGTATATGCACTGA+AGG	0.622459	5:+3549108	MsG0580024339.01.T01:CDS
AATGGGGCAGGTCTTCCTCC+TGG	0.501327	5:+3549075	MsG0580024339.01.T01:CDS
ACATTCTCAATATCTTTACT+TGG	0.382845	5:-3547733	None:intergenic
ACCTTGAAGAAGTTGAGGAA+CGG	0.536931	5:+3545402	MsG0580024339.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAGTTCTCCAAAAATGA+TGG	+	Chr5:3548582-3548601	MsG0580024339.01.T01:intron	30.0%
AAAGTTACTAAGGCTATGTT+TGG	+	Chr5:3548095-3548114	MsG0580024339.01.T01:intron	30.0%
AACTTTCGATAGTGTATCTT+GGG	+	Chr5:3547389-3547408	MsG0580024339.01.T01:intron	30.0%
AAGTTACTAAGGCTATGTTT+GGG	+	Chr5:3548096-3548115	MsG0580024339.01.T01:intron	30.0%
AATACAAAATCCCCCTAATT+TGG	-	Chr5:3548351-3548370	None:intergenic	30.0%
AATCTACAACGGAATACTAT+AGG	-	Chr5:3547421-3547440	None:intergenic	30.0%
AATTTGATGTTGTCCTAGAT+TGG	+	Chr5:3546285-3546304	MsG0580024339.01.T01:intron	30.0%
AGGATGATAGAAAATCACAA+TGG	-	Chr5:3548775-3548794	None:intergenic	30.0%
AGGTTTATGCACGATTATTA+AGG	+	Chr5:3545720-3545739	MsG0580024339.01.T01:intron	30.0%
AGTGATAAATATGTAACAGC+TGG	-	Chr5:3548741-3548760	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	3544964	3550013	3544964	ID=MsG0580024339.01;Name=MsG0580024339.01
Chr5	mRNA	3544964	3550013	3544964	ID=MsG0580024339.01.T01;Parent=MsG0580024339.01;Name=MsG0580024339.01.T01;_AED=0.34;_eAED=0.34;_QI=144\|1\|1\|1\|0.8\|0.66\|6\|262\|417
Chr5	exon	3544964	3545064	3544964	ID=MsG0580024339.01.T01:exon:1101;Parent=MsG0580024339.01.T01
Chr5	exon	3545304	3545430	3545304	ID=MsG0580024339.01.T01:exon:1102;Parent=MsG0580024339.01.T01
Chr5	exon	3546996	3547154	3546996	ID=MsG0580024339.01.T01:exon:1103;Parent=MsG0580024339.01.T01
Chr5	exon	3547652	3547912	3547652	ID=MsG0580024339.01.T01:exon:1104;Parent=MsG0580024339.01.T01
Chr5	exon	3548808	3549467	3548808	ID=MsG0580024339.01.T01:exon:1105;Parent=MsG0580024339.01.T01
Chr5	exon	3549662	3550013	3549662	ID=MsG0580024339.01.T01:exon:1106;Parent=MsG0580024339.01.T01
Chr5	five_prime_UTR	3544964	3545064	3544964	ID=MsG0580024339.01.T01:five_prime_utr;Parent=MsG0580024339.01.T01
Chr5	five_prime_UTR	3545304	3545346	3545304	ID=MsG0580024339.01.T01:five_prime_utr;Parent=MsG0580024339.01.T01
Chr5	CDS	3545347	3545430	3545347	ID=MsG0580024339.01.T01:cds;Parent=MsG0580024339.01.T01
Chr5	CDS	3546996	3547154	3546996	ID=MsG0580024339.01.T01:cds;Parent=MsG0580024339.01.T01
Chr5	CDS	3547652	3547912	3547652	ID=MsG0580024339.01.T01:cds;Parent=MsG0580024339.01.T01
Chr5	CDS	3548808	3549467	3548808	ID=MsG0580024339.01.T01:cds;Parent=MsG0580024339.01.T01
Chr5	CDS	3549662	3549751	3549662	ID=MsG0580024339.01.T01:cds;Parent=MsG0580024339.01.T01
Chr5	three_prime_UTR	3549752	3550013	3549752	ID=MsG0580024339.01.T01:three_prime_utr;Parent=MsG0580024339.01.T01

Gene Sequence

>MsG0580024339.01.T01

ATGGATTCTGCGTTTGATGATGAAGAAGGTGGGCCATCCGTTACGCTCGGCGAGTACCTTGAAGAAGTTGAGGAACGGGAGCTGGAAGCTGATTTAGTTTTGGGGGGCGATGAAGGCAGGGAGTGTACCTATAACAAAGGGTACATGAAAAGGCAGGCAATTTTCTCTTGCATCACCTGCACCCCTGATGGGAATGCTGGAGTTTGCACTGCTTGCTCGTTGTCTTGCCATGATGGTCATCAGATTGTGGAACTATGGACAAAAAGAAACTTCAGATGTGACTGTGGGAATTCAAAGTTTAATGAATTCTACTGCAAGATTTTCCCAAGTAAAGATATTGAGAATGTTGAGAATTCGTACAATCACAACTTTAAAGGTTTGTATTGCACCTGTGCGCGCCCTTATCCAGATCCAGATGCTGAAGAACAAATAGAGATGATACAGTGTTGTTTGTGTGAGGACTGGTTTCATGAAGAGCATCTTGGTCTCGAGTCTTCTGATGAGATTCCCAGAGATGAAGAAGGTGAGCCACTTTACGAGGATTTCATGTGTAAGGCATGCTCTGAAGTATGTTTCTTTCTGAAATTATATCCTGAGGTAATATTGGTGGCTGGCAAGCAGTCAAATGCTACTGCTCAAGTTAGCAAGGACAAAGGTATTTTGGAAGACATGCCTTCAACTTGTGGGTCTGAAAAGCCACTGGGTGATACTTCATATAATTCTCCTAAAATTGATGTGGCACAAGATTCTGTTGGTTCTGAATCTATATCTAATGGGGCAGGTCTTCCTCCTGGTGGAAGTTGTAATAGCAGTATATGCACTGAAGGCGCCAGTTTGCATGTTAATTGTCTCCTTGGTGTGAACATTGTTGCTGCTTCCCCAGTTATACATGGTAAAGCAATGTTCCTTTCCAAAAATTGGAGAGATGCTCTATGCAAATGCAAGAATTGTTTGGAATATTATCATCAGAAGCGGATTGCTTTTCTACTTGACAAGGAGGACTCAATTGTGGAGTATGAGAAAATTGCGAAGCAAAGAAGAGAAGAAAAGTTACAGCAACAGGAGGGTGCTGAGCTAAGTCTTTTTAATAAACTTGGACATGTAGAGAAAGTCGAGATCCTGAAGGGCATTGAAGATATGAAGGACGGGCTTCGCACTTTCCTGGAGTCAGCCGATTCGTCCAAGCCAATTTCTGCTGCTGATATCCATCAGTTTTTTGATGACATTAAGAATAAGCGGCGCCGTGTAGGGTGA

Protein sequence

>MsG0580024339.01.T01

MDSAFDDEEGGPSVTLGEYLEEVEERELEADLVLGGDEGRECTYNKGYMKRQAIFSCITCTPDGNAGVCTACSLSCHDGHQIVELWTKRNFRCDCGNSKFNEFYCKIFPSKDIENVENSYNHNFKGLYCTCARPYPDPDAEEQIEMIQCCLCEDWFHEEHLGLESSDEIPRDEEGEPLYEDFMCKACSEVCFFLKLYPEVILVAGKQSNATAQVSKDKGILEDMPSTCGSEKPLGDTSYNSPKIDVAQDSVGSESISNGAGLPPGGSCNSSICTEGASLHVNCLLGVNIVAASPVIHGKAMFLSKNWRDALCKCKNCLEYYHQKRIAFLLDKEDSIVEYEKIAKQRREEKLQQQEGAELSLFNKLGHVEKVEILKGIEDMKDGLRTFLESADSSKPISAADIHQFFDDIKNKRRRVG*