AlfalfaGEDB | MsG0780039620.01

M. sativa cultivar ZhongmuNo.1 / MsG0780039620.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039620.01.T01	MCH97906.1	88.148	135	16	0	7	141	1	135	1.10E-82	250

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039620.01.T01	Q8LG03	46.528	144	77	0	6	149	39	182	1.57E-33	124

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039620.01.T01	A0A392NDF3	88.148	135	16	0	7	141	1	135	5.25e-83	250

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180005559.01	MsG0780039620.01	0.806224	9.127152e-50	4.927182e-47
MsG0180006023.01	MsG0780039620.01	0.809418	1.911228e-50	1.121575e-47
MsG0280010459.01	MsG0780039620.01	0.806125	9.572369e-50	5.154437e-47
MsG0280010614.01	MsG0780039620.01	0.822181	2.717525e-53	2.257807e-50
MsG0280010735.01	MsG0780039620.01	0.802947	4.405685e-49	2.186185e-46
MsG0280011085.01	MsG0780039620.01	0.836292	1.019295e-56	1.279093e-53
MsG0480020445.01	MsG0780039620.01	0.825428	4.712345e-54	4.293810e-51
MsG0480021134.01	MsG0780039620.01	0.818472	1.925716e-52	1.442901e-49
MsG0480022479.01	MsG0780039620.01	0.838933	2.141979e-57	2.912574e-54
MsG0580024682.01	MsG0780039620.01	0.806437	8.231501e-50	4.467636e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039620.01.T01	MTR_7g076190	85.517	145	20	1	6	150	46	189	5.77e-85	254

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780039620.01.T01	AT4G00755	46.528	144	77	0	6	149	39	182	1.60e-34	124
MsG0780039620.01.T01	AT4G00755	46.528	144	77	0	6	149	39	182	1.60e-34	124

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Find 35 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAGGAGATAAGCAGGATT+TGG	0.417619	7:-66786493	None:intergenic
AAGTGGTATGTTAATGTCTC+GGG	0.494932	7:-66786663	None:intergenic
AATCAAATTCAGCCTTTCCA+AGG	0.525422	7:+66786713	MsG0780039620.01.T01:CDS
ACTGATGTTATGGTTTGCAG+TGG	0.653450	7:+66786296	None:intergenic
CAAGCAACTCTAGATAATTG+AGG	0.563729	7:-66786360	None:intergenic
CAAGTGGTATGTTAATGTCT+CGG	0.516076	7:-66786664	None:intergenic
CACATATTTGAGAGGTCAAG+TGG	0.574105	7:-66786680	None:intergenic
CTATGATCTTTCTGAAGAGC+TGG	0.481335	7:-66786453	None:intergenic
CTCAACAACAGGAGATAAGC+AGG	0.486568	7:-66786499	None:intergenic
CTGAACCAGAATGGAGTAAA+TGG	0.275177	7:+66786393	MsG0780039620.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAGATTTCAAATATCACCT+TGG	-	Chr7:66786733-66786752	None:intergenic	30.0%
TTTCAAATATCACCTTGGAA+AGG	-	Chr7:66786728-66786747	None:intergenic	30.0%
AAGTGGTATGTTAATGTCTC+GGG	-	Chr7:66786666-66786685	None:intergenic	35.0%
AATCAAATTCAGCCTTTCCA+AGG	+	Chr7:66786713-66786732	MsG0780039620.01.T01:CDS	35.0%
CAAGCAACTCTAGATAATTG+AGG	-	Chr7:66786363-66786382	None:intergenic	35.0%
CAAGTGGTATGTTAATGTCT+CGG	-	Chr7:66786667-66786686	None:intergenic	35.0%
AACAGGAGATAAGCAGGATT+TGG	-	Chr7:66786496-66786515	None:intergenic	40.0%
CACATATTTGAGAGGTCAAG+TGG	-	Chr7:66786683-66786702	None:intergenic	40.0%
CTGAACCAGAATGGAGTAAA+TGG	+	Chr7:66786393-66786412	MsG0780039620.01.T01:CDS	40.0%
CTTGAGGAAAGAGACAACAT+TGG	+	Chr7:66786591-66786610	MsG0780039620.01.T01:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	66786300	66786782	66786300	ID=MsG0780039620.01;Name=MsG0780039620.01
Chr7	mRNA	66786300	66786782	66786300	ID=MsG0780039620.01.T01;Parent=MsG0780039620.01;Name=MsG0780039620.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|160
Chr7	exon	66786300	66786782	66786300	ID=MsG0780039620.01.T01:exon:13183;Parent=MsG0780039620.01.T01
Chr7	CDS	66786300	66786782	66786300	ID=MsG0780039620.01.T01:cds;Parent=MsG0780039620.01.T01

Gene Sequence

>MsG0780039620.01.T01

ATGTTATGGTTTGCAGTGGTTACAAATGGCCTTTCTAAGCAGTTGTGCTTGAGAATGTTTCCTCAATTATCTAGAGTTGCTTGTGTTGTTGAACTGAACCAGAATGGAGTAAATGGACACACAGAGGTTGGATCTAGCCAATCTATGGAAAGTCCAGCTCTTCAGAAAGATCATAGAGTCTATAGTTATTTTGCCAAATCCTGCTTATCTCCTGTTGTTGAGGATTGCATAGCTAAGGCAATTGGTGCTTCTAGCACTGATAATTTCCCTCAGGAGAGCATTGATCACACTCTTGAGGAAAGAGACAACATTGGTGGTAGATTTTCCTATTGGTCAAGTAGTGGACAAAGTAATCCCAATGTACCCGAGACATTAACATACCACTTGACCTCTCAAATATGTGTTATTACAGAAATCAAATTCAGCCTTTCCAAGGTGATATTTGAAATCTTCAGAAACTATGTGCTCGACTCATTTATTTGA

Protein sequence

>MsG0780039620.01.T01

MLWFAVVTNGLSKQLCLRMFPQLSRVACVVELNQNGVNGHTEVGSSQSMESPALQKDHRVYSYFAKSCLSPVVEDCIAKAIGASSTDNFPQESIDHTLEERDNIGGRFSYWSSSGQSNPNVPETLTYHLTSQICVITEIKFSLSKVIFEIFRNYVLDSFI*