AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005559.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005559.01.T01 MTR_1g102840 93.075 722 15 2 1 687 1 722 0.0 1366
MsG0180005559.01.T01 MTR_2g063923 96.078 51 2 0 88 138 1 51 7.86e-26 101
MsG0180005559.01.T01 MTR_4g025780 94.118 51 3 0 88 138 1 51 7.67e-25 98.6
MsG0180005559.01.T01 MTR_4g054245 94.118 51 3 0 88 138 1 51 7.67e-25 98.6
MsG0180005559.01.T01 MTR_2g435660 94.118 51 3 0 88 138 1 51 7.97e-25 98.6
MsG0180005559.01.T01 MTR_2g445250 69.697 66 7 2 88 153 1 53 1.57e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005559.01.T01 AT1G04200 62.659 707 217 9 1 663 1 704 0.0 849
MsG0180005559.01.T01 AT1G04200 62.910 701 213 9 1 657 1 698 0.0 848
MsG0180005559.01.T01 AT1G04200 63.946 588 195 8 1 574 1 585 0.0 719

Find 150 sgRNAs with CRISPR-Local

Find 467 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTGCAGAAACTTGAAAA+TGG 0.238015 1:-93268490 MsG0180005559.01.T01:intron
TCAACAAGCTTGCGAGCTTT+TGG 0.247107 1:-93276019 MsG0180005559.01.T01:CDS
AGTATGAGTTGTCGGAAAAT+TGG 0.247352 1:+93273610 None:intergenic
TTTATTGCCATTCAGTTATT+TGG 0.247408 1:-93273793 MsG0180005559.01.T01:intron
ATCAGATACTCCGCCGTTTC+CGG 0.250368 1:+93276141 None:intergenic
TTAACAGTTAATGCCGATTC+TGG 0.255186 1:-93271539 MsG0180005559.01.T01:intron
TGCTAGAATTAAGTTTAATA+AGG 0.276337 1:+93267858 None:intergenic
GTACAAATAACTAATATATT+TGG 0.284217 1:+93268376 None:intergenic
ATTTGATCTAAACGCGATTA+TGG 0.288042 1:+93276329 None:intergenic
TCCCTTTCTCATCGGAGTTT+TGG 0.288337 1:-93276092 MsG0180005559.01.T01:CDS
TAATTGTCAATTGTCGTTCT+TGG 0.310408 1:-93269373 MsG0180005559.01.T01:CDS
AGCTGTATTGAAGGATGTTT+TGG 0.311599 1:-93275220 MsG0180005559.01.T01:CDS
ACAATCAATTGCTTGCTCTA+AGG 0.322841 1:+93273581 None:intergenic
ATATTAGTTATTTGTACATA+TGG 0.323783 1:-93268370 MsG0180005559.01.T01:three_prime_UTR
AGAAATGGATTCACATCATT+TGG 0.337198 1:+93274263 None:intergenic
CAGGAGTCCATGTCTACTTC+TGG 0.340480 1:-93275357 MsG0180005559.01.T01:CDS
CCATCTAGCATGCTACTTGC+AGG 0.357257 1:-93275376 MsG0180005559.01.T01:CDS
TGAAGACTGCTATCCGCTAT+TGG 0.357789 1:+93273741 None:intergenic
AAATCTCGTTGCGTCTGATT+TGG 0.366589 1:+93276249 None:intergenic
CTTCTATGTGGTCCATCTCC+TGG 0.369080 1:-93274287 MsG0180005559.01.T01:CDS
CACCAAGACATACTCCAAAA+AGG 0.384253 1:+93272156 None:intergenic
TTTGTTGCTAATAGTAATAA+TGG 0.384954 1:-93267903 MsG0180005559.01.T01:three_prime_UTR
CACAACATGTCTGGCAACTT+TGG 0.386340 1:-93270290 MsG0180005559.01.T01:CDS
GTCCTAGGGTTCCATTCAAT+CGG 0.402739 1:-93274070 MsG0180005559.01.T01:CDS
GTATGAGTTGTCGGAAAATT+GGG 0.418061 1:+93273611 None:intergenic
AATTGCAGAAACTTGAAAAT+GGG 0.422881 1:-93268489 MsG0180005559.01.T01:intron
CTTCTTCATCAGACTTCTCT+CGG 0.423513 1:-93271291 MsG0180005559.01.T01:CDS
TACTTCTGGTGTGCCGCCCT+TGG 0.424143 1:-93275343 MsG0180005559.01.T01:CDS
AATACAAGCTGCCAGACATA+TGG 0.427398 1:+93269161 None:intergenic
TCCAGTGGATTCACATTCAA+TGG 0.429298 1:-93268898 MsG0180005559.01.T01:intron
ACTTCTGAGTGTAGATCAAC+TGG 0.432018 1:+93268856 None:intergenic
TAAATTTCATTACCCGTCCT+AGG 0.433481 1:-93274085 MsG0180005559.01.T01:CDS
AGCTTCCTCTCAATGTTCAA+TGG 0.433824 1:-93276056 MsG0180005559.01.T01:CDS
GGATAAGTTGCCCGATTGAA+TGG 0.439502 1:+93274059 None:intergenic
GCCATTGCTGCATCAAGAAA+TGG 0.442208 1:+93274248 None:intergenic
CAGAGAGTTGGTTCTGCAGC+TGG 0.443092 1:-93274002 MsG0180005559.01.T01:CDS
CAAAAGCTTTGCAAGATGCC+TGG 0.445218 1:+93275401 None:intergenic
GCTTCTTTGTTTGATACACT+TGG 0.446013 1:-93273415 MsG0180005559.01.T01:CDS
AGATGTAGAAGAAATGTGTT+TGG 0.446412 1:+93274350 None:intergenic
TTGTATAGAGCTTCCAGAAT+CGG 0.447982 1:+93271526 None:intergenic
CTGACTTCCGTCATAAAAGA+TGG 0.448275 1:+93274037 None:intergenic
TTGGTCAGTTCTAGCGGTGA+AGG 0.448891 1:-93273774 MsG0180005559.01.T01:CDS
CCATTGAAAATCTTGTTATG+AGG 0.450602 1:-93274510 MsG0180005559.01.T01:CDS
TCTCGTTGCGTCTGATTTGG+TGG 0.455300 1:+93276252 None:intergenic
GAGGGGAGCACATTTCAAAA+TGG 0.456497 1:-93268463 MsG0180005559.01.T01:CDS
GCAAAAGACAACTCAATTGA+AGG 0.460931 1:-93270033 MsG0180005559.01.T01:CDS
CCTGCAAGTAGCATGCTAGA+TGG 0.461271 1:+93275376 None:intergenic
TGTCAATTGTCGTTCTTGGA+GGG 0.461882 1:-93269369 MsG0180005559.01.T01:CDS
GGCCTTGCAGTATGAGTTGT+CGG 0.470545 1:+93273602 None:intergenic
CAATGCAAGCATTCATAAGC+TGG 0.472267 1:-93271428 MsG0180005559.01.T01:intron
TCAGAAGTGTTAGAAGAGAA+AGG 0.476351 1:-93267986 MsG0180005559.01.T01:three_prime_UTR
ACATCATTTGGTCCAGGAGA+TGG 0.476918 1:+93274275 None:intergenic
TCTTGATGCAGCAATGGCTC+AGG 0.478233 1:-93274243 MsG0180005559.01.T01:intron
TGTCGTTCTTGGAGGGGTGA+TGG 0.481317 1:-93269362 MsG0180005559.01.T01:CDS
TTGAAGCACTTGATTGAAAG+TGG 0.483841 1:-93275276 MsG0180005559.01.T01:CDS
GCTTGTTGAACACGTTCAGC+AGG 0.484714 1:+93276033 None:intergenic
TGGTGAATTCTCGCCGGAAA+CGG 0.485057 1:-93276154 MsG0180005559.01.T01:CDS
CTATCTCCACACAACATGTC+TGG 0.491940 1:-93270299 MsG0180005559.01.T01:CDS
ATCAACTGGAAACAAAGTTA+TGG 0.496495 1:+93268870 None:intergenic
TGCCAAAACTCCGATGAGAA+AGG 0.497393 1:+93276090 None:intergenic
GACTTCTCTCGGTTCTCTCA+TGG 0.498877 1:-93271280 MsG0180005559.01.T01:CDS
TTGTCAATTGTCGTTCTTGG+AGG 0.499310 1:-93269370 MsG0180005559.01.T01:CDS
GTCAATTGTCGTTCTTGGAG+GGG 0.499329 1:-93269368 MsG0180005559.01.T01:CDS
ATGGATGCTCAAAGAGTTGA+TGG 0.501521 1:-93269428 MsG0180005559.01.T01:CDS
TCCGAGGCAGTGCATAAGTC+AGG 0.502883 1:+93269829 None:intergenic
GCCGCCCTTGGTTTATGAAA+AGG 0.503373 1:-93275331 MsG0180005559.01.T01:CDS
CAGAAGTGTTAGAAGAGAAA+GGG 0.506467 1:-93267985 MsG0180005559.01.T01:three_prime_UTR
TGTAGTAATACAAGCAGCTA+TGG 0.510598 1:+93268409 None:intergenic
TGAAGATTTGTTATTCTCAA+AGG 0.510658 1:+93273662 None:intergenic
GGCAGCTTGTATTATCCCAC+TGG 0.510955 1:-93269151 MsG0180005559.01.T01:intron
CTGCATTGTGTGAAAATTCG+CGG 0.511649 1:+93276293 None:intergenic
TATGGATCAAGCTGATACTC+AGG 0.512445 1:+93268427 None:intergenic
GTTCTGCAGCTGGTATGAAC+TGG 0.512822 1:-93273992 MsG0180005559.01.T01:intron
AGTATAATTTGTCTAAACTA+CGG 0.514372 1:-93271233 MsG0180005559.01.T01:CDS
GCCAAAACTCCGATGAGAAA+GGG 0.514991 1:+93276091 None:intergenic
TTGCAGGACAGTGCTCTGGT+TGG 0.519435 1:-93274131 MsG0180005559.01.T01:intron
GGATTCACATCATTTGGTCC+AGG 0.520084 1:+93274269 None:intergenic
AAACTTGAAAATGGGGTGGA+GGG 0.521462 1:-93268481 MsG0180005559.01.T01:CDS
TTGGAGGGGTGATGGAATGA+AGG 0.521901 1:-93269354 MsG0180005559.01.T01:intron
AAATTCGCGGAGAGATGAAA+AGG 0.522249 1:+93276306 None:intergenic
GTATAATTTGTCTAAACTAC+GGG 0.522855 1:-93271232 MsG0180005559.01.T01:intron
TCCATTTCTTGATGCAGCAA+TGG 0.525469 1:-93274249 MsG0180005559.01.T01:CDS
TCTGGCAACTTTGGCTAACA+TGG 0.526191 1:-93270281 MsG0180005559.01.T01:CDS
TCCTAGGGTTCCATTCAATC+GGG 0.528395 1:-93274069 MsG0180005559.01.T01:CDS
CTGCTTTACTCGTTGTTGCA+AGG 0.530765 1:-93272187 MsG0180005559.01.T01:CDS
AACTTGAAAATGGGGTGGAG+GGG 0.530844 1:-93268480 MsG0180005559.01.T01:CDS
AAATTTCATTACCCGTCCTA+GGG 0.535814 1:-93274084 MsG0180005559.01.T01:CDS
GTATCAAACAAAGAAGCAAA+AGG 0.539005 1:+93273421 None:intergenic
AGATATTGACGGGTGTTCCA+TGG 0.539663 1:-93271326 MsG0180005559.01.T01:CDS
CTACAGGTGCTTAGCTGATG+AGG 0.541613 1:-93272221 MsG0180005559.01.T01:intron
GGATATCTCATCTTCATCTA+CGG 0.547062 1:+93268246 None:intergenic
CTCGTTGCGTCTGATTTGGT+GGG 0.548754 1:+93276253 None:intergenic
CGGTGATGAAGCTGTATTGA+AGG 0.551387 1:-93275229 MsG0180005559.01.T01:CDS
CATATAATATGTGAGTGTAA+AGG 0.553230 1:-93268275 MsG0180005559.01.T01:three_prime_UTR
CTCAAAGAGTTGATGGTGAC+TGG 0.559695 1:-93269421 MsG0180005559.01.T01:CDS
ATACAAGCTGCCAGACATAT+GGG 0.560101 1:+93269162 None:intergenic
TGGTCAGTTCTAGCGGTGAA+GGG 0.562021 1:-93273773 MsG0180005559.01.T01:CDS
GCGTCAACGCCGCGTAAGCG+TGG 0.562192 1:-93276174 MsG0180005559.01.T01:CDS
TGCGTGAGAGCATATCGAAA+AGG 0.562962 1:+93270209 None:intergenic
AAACGGCGGAGTATCTGATC+GGG 0.563126 1:-93276137 MsG0180005559.01.T01:CDS
GAAACTTGAAAATGGGGTGG+AGG 0.566467 1:-93268482 MsG0180005559.01.T01:CDS
TTAATAAGGAAACTAACTAA+AGG 0.568253 1:+93267872 None:intergenic
TCCTGACTTATGCACTGCCT+CGG 0.568559 1:-93269830 MsG0180005559.01.T01:CDS
ATAAATGGACAGATATTGAC+GGG 0.571914 1:-93271336 MsG0180005559.01.T01:intron
TGACTTCCGTCATAAAAGAT+GGG 0.573912 1:+93274038 None:intergenic
CTCTATACAATGCTCAAAGT+AGG 0.575529 1:-93271513 MsG0180005559.01.T01:CDS
TGCACTGCCTCGGAATCCTG+AGG 0.576677 1:-93269820 MsG0180005559.01.T01:intron
TATAAATGGACAGATATTGA+CGG 0.577847 1:-93271337 MsG0180005559.01.T01:intron
ATGCATATGCACTCAAACGA+TGG 0.579561 1:+93270248 None:intergenic
GACAATTGACAATTATCACT+TGG 0.582059 1:+93269381 None:intergenic
AGTAGTGTGCTACAGAGAGT+TGG 0.584242 1:-93274014 MsG0180005559.01.T01:CDS
GCAGGCCATTGAACATTGAG+AGG 0.586568 1:+93276051 None:intergenic
AGATTTACACCGACTTCTTG+AGG 0.588529 1:-93269878 MsG0180005559.01.T01:CDS
GATTGAATGGAACCCTAGGA+CGG 0.589445 1:+93274072 None:intergenic
TGAGTCGTTCCCTTTCTCAT+CGG 0.590887 1:-93276100 MsG0180005559.01.T01:CDS
AGTTATTTGGTCAGTTCTAG+CGG 0.592547 1:-93273780 MsG0180005559.01.T01:CDS
GCTACAATTGTAATAAACAA+TGG 0.598262 1:-93267829 MsG0180005559.01.T01:three_prime_UTR
GAAACGGCGGAGTATCTGAT+CGG 0.598466 1:-93276138 MsG0180005559.01.T01:CDS
AAACAGCTTTGTAGATGATG+TGG 0.603825 1:-93270010 MsG0180005559.01.T01:intron
CGGCACACCAGAAGTAGACA+TGG 0.605343 1:+93275350 None:intergenic
GCGGACTGATATAGATACAT+TGG 0.606351 1:-93272134 MsG0180005559.01.T01:intron
CAAAAGGCAACTTTATGTGT+CGG 0.607785 1:+93273437 None:intergenic
ATTGAATGGAACCCTAGGAC+GGG 0.610890 1:+93274073 None:intergenic
TTCGATCAACAGCATTAGTG+AGG 0.611239 1:+93268140 None:intergenic
TTCCGACAACTCATACTGCA+AGG 0.614177 1:-93273604 MsG0180005559.01.T01:CDS
ATGTCAACTCAGCTTCTATG+TGG 0.615467 1:-93274299 MsG0180005559.01.T01:CDS
GCCCGATTGAATGGAACCCT+AGG 0.619396 1:+93274068 None:intergenic
GTCAACACTTATTCAATACA+TGG 0.623294 1:+93268225 None:intergenic
GAGAATTCACCACGCTTACG+CGG 0.624617 1:+93276165 None:intergenic
TAGTACAAGCCTCAAGAAGT+CGG 0.626371 1:+93269869 None:intergenic
AGAAGACGTTCTTTGTACCA+TGG 0.627342 1:+93271309 None:intergenic
TGAATTCTCGCCGGAAACGG+CGG 0.628376 1:-93276151 MsG0180005559.01.T01:CDS
AATCAAACCTCAGGATTCCG+AGG 0.640879 1:+93269813 None:intergenic
GCACTCAAACGATGGACATG+AGG 0.645187 1:+93270256 None:intergenic
GCTGCTAATGCAGTGTACAT+CGG 0.647239 1:-93275309 MsG0180005559.01.T01:CDS
TCATAAATGTGCTGTGAGTG+AGG 0.652275 1:-93273694 MsG0180005559.01.T01:CDS
TGCTTGTATTACTACAAATG+TGG 0.652623 1:-93268402 MsG0180005559.01.T01:three_prime_UTR
TAAGCGTGGTGAATTCTCGC+CGG 0.654399 1:-93276160 MsG0180005559.01.T01:CDS
GTGGATCGTGTAGACATCGA+GGG 0.661731 1:-93273475 MsG0180005559.01.T01:CDS
GCAGAAACTTGAAAATGGGG+TGG 0.670526 1:-93268485 MsG0180005559.01.T01:intron
TTATAGCATCAGTAGAAGTG+AGG 0.679234 1:-93274474 MsG0180005559.01.T01:intron
GCAACAACGAGTAAAGCAGT+AGG 0.683317 1:+93272191 None:intergenic
GTAACTTAGATATAACACTA+CGG 0.691773 1:+93268031 None:intergenic
ATTGCAGAAACTTGAAAATG+GGG 0.695036 1:-93268488 MsG0180005559.01.T01:intron
AAGTTGCCAGACATGTTGTG+TGG 0.696150 1:+93270293 None:intergenic
AGTGGATCGTGTAGACATCG+AGG 0.705403 1:-93273476 MsG0180005559.01.T01:CDS
AGGGTCAAGAAATCCAATAG+CGG 0.724780 1:-93273754 MsG0180005559.01.T01:CDS
ATCGAGGGCAATGCACACAG+TGG 0.738266 1:-93273460 MsG0180005559.01.T01:CDS
AACAGCATTAGTGAGGACTG+AGG 0.749833 1:+93268147 None:intergenic
TGAACAAGAGAGACACCCTG+AGG 0.796957 1:-93269195 MsG0180005559.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTCTAAATATATAAATTA+GGG + Chr1:93272437-93272456 None:intergenic 10.0%
!! ATGAATTTATTATAGTTTAT+TGG - Chr1:93272143-93272162 MsG0180005559.01.T01:CDS 10.0%
!! CAAAAATTAACTTAAAAATA+AGG + Chr1:93271024-93271043 None:intergenic 10.0%
!! TGTTTGTTTAAAAAATATAA+GGG + Chr1:93272217-93272236 None:intergenic 10.0%
!! TTAGATATATATTAAACATA+CGG + Chr1:93274614-93274633 None:intergenic 10.0%
!!! ATGAATTTTTATATTTTTGA+CGG + Chr1:93271151-93271170 None:intergenic 10.0%
!! AATATATCATAGAATTTAAG+AGG - Chr1:93274925-93274944 MsG0180005559.01.T01:intron 15.0%
!! ACTACAATAATAATAGAAAA+AGG + Chr1:93269841-93269860 None:intergenic 15.0%
!! ATATAATATATATACCATCT+TGG - Chr1:93274225-93274244 MsG0180005559.01.T01:intron 15.0%
!! ATATATAATCAAGTAGAAAA+GGG + Chr1:93273066-93273085 None:intergenic 15.0%
!! ATATTAGTTATTTGTACATA+TGG - Chr1:93275841-93275860 MsG0180005559.01.T01:intron 15.0%
!! CTTCTAAATATATAAATTAG+GGG + Chr1:93272436-93272455 None:intergenic 15.0%
!! GACTTCTAAATATATAAATT+AGG + Chr1:93272438-93272457 None:intergenic 15.0%
!! GTACAAATAACTAATATATT+TGG + Chr1:93275838-93275857 None:intergenic 15.0%
!! GTGTTTGTTTAAAAAATATA+AGG + Chr1:93272218-93272237 None:intergenic 15.0%
!! GTTTGTTTAAAAAATATAAG+GGG + Chr1:93272216-93272235 None:intergenic 15.0%
!! TAACTAATAAGCATATTAAT+TGG + Chr1:93273133-93273152 None:intergenic 15.0%
!! TATATATAATCAAGTAGAAA+AGG + Chr1:93273067-93273086 None:intergenic 15.0%
!!! ATATGATTTTACTTTAAAAG+AGG - Chr1:93271274-93271293 MsG0180005559.01.T01:CDS 15.0%
!!! TAGTGATTGAAAATTTTATA+GGG + Chr1:93270993-93271012 None:intergenic 15.0%
!!! TATGATTTTACTTTAAAAGA+GGG - Chr1:93271275-93271294 MsG0180005559.01.T01:CDS 15.0%
!!! TTAATCTATTTGATTTGTAT+GGG - Chr1:93268672-93268691 MsG0180005559.01.T01:intron 15.0%
!!! TTATATTATTGCTTTTATGA+TGG - Chr1:93275498-93275517 MsG0180005559.01.T01:intron 15.0%
!!! TTTAATCTATTTGATTTGTA+TGG - Chr1:93268671-93268690 MsG0180005559.01.T01:intron 15.0%
!! AGAATACTCAATTTAGAAAA+AGG + Chr1:93274290-93274309 None:intergenic 20.0%
!! AGAATTTGCAAGATTTAAAA+GGG + Chr1:93274660-93274679 None:intergenic 20.0%
!! ATAACTCAATGATAATTAAC+CGG + Chr1:93269789-93269808 None:intergenic 20.0%
!! ATATATATTAGAGAAAGTGA+GGG - Chr1:93272404-93272423 MsG0180005559.01.T01:intron 20.0%
!! CAACGACAATAATAATAAAA+AGG + Chr1:93270298-93270317 None:intergenic 20.0%
!! CTACTATTATCAGTATTTAT+TGG - Chr1:93273168-93273187 MsG0180005559.01.T01:intron 20.0%
!! CTGTTATGTAAAAAAATGAT+AGG - Chr1:93273885-93273904 MsG0180005559.01.T01:intron 20.0%
!! TACTATTAGCAACAAAAAAA+AGG + Chr1:93276304-93276323 None:intergenic 20.0%
!! TAGAATTTGCAAGATTTAAA+AGG + Chr1:93274661-93274680 None:intergenic 20.0%
!! TAGCATAATATTCATGTAAA+CGG - Chr1:93269435-93269454 MsG0180005559.01.T01:CDS 20.0%
!! TATGACAAATAAGTGAATAA+CGG + Chr1:93272247-93272266 None:intergenic 20.0%
!! TATGTATCTTGTAAAAATAG+AGG + Chr1:93272317-93272336 None:intergenic 20.0%
!! TGAAAAAAATATAGCAGAAA+AGG + Chr1:93275259-93275278 None:intergenic 20.0%
!! TGCTAGAATTAAGTTTAATA+AGG + Chr1:93276356-93276375 None:intergenic 20.0%
!! TTAAGTCATTGTAAATCATA+TGG - Chr1:93272552-93272571 MsG0180005559.01.T01:intron 20.0%
!! TTAATAAGGAAACTAACTAA+AGG + Chr1:93276342-93276361 None:intergenic 20.0%
!! TTTGTTGCTAATAGTAATAA+TGG - Chr1:93276308-93276327 MsG0180005559.01.T01:five_prime_UTR 20.0%
!!! AAAAATTTCATCTTCACTTT+TGG + Chr1:93271302-93271321 None:intergenic 20.0%
!!! AAATTGAAGGAAAATTTTAG+AGG + Chr1:93270965-93270984 None:intergenic 20.0%
!!! AAATTTTCAATCACTACTTT+TGG - Chr1:93270997-93271016 MsG0180005559.01.T01:intron 20.0%
!!! AACCTTTTTTTTTTCTGAAT+GGG - Chr1:93268007-93268026 MsG0180005559.01.T01:three_prime_UTR 20.0%
!!! AACGTAAATTTTAACTGTTT+TGG + Chr1:93274475-93274494 None:intergenic 20.0%
!!! AAGTTGAAGAAATTTTTTAG+AGG - Chr1:93271334-93271353 MsG0180005559.01.T01:intron 20.0%
!!! AATTGAAGGAAAATTTTAGA+GGG + Chr1:93270964-93270983 None:intergenic 20.0%
!!! AGGTTAATTTGGTATATAAA+TGG - Chr1:93272860-93272879 MsG0180005559.01.T01:intron 20.0%
!!! AGTATAATTTGTCTAAACTA+CGG - Chr1:93272978-93272997 MsG0180005559.01.T01:intron 20.0%
!!! AGTTGAAGAAATTTTTTAGA+GGG - Chr1:93271335-93271354 MsG0180005559.01.T01:intron 20.0%
!!! CATTTTTTTACATAACAGAA+TGG + Chr1:93273883-93273902 None:intergenic 20.0%
!!! CTAAAAGGTATAAATTTGAA+TGG + Chr1:93274064-93274083 None:intergenic 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG + Chr1:93270933-93270952 None:intergenic 20.0%
!!! GAAAATTGGTATCTTTTTTA+AGG - Chr1:93273603-93273622 MsG0180005559.01.T01:CDS 20.0%
!!! GCTTTTATTAATAGAATCAA+GGG - Chr1:93270890-93270909 MsG0180005559.01.T01:intron 20.0%
!!! GTAGTGATTGAAAATTTTAT+AGG + Chr1:93270994-93271013 None:intergenic 20.0%
!!! TAACCTTTTTTTTTTCTGAA+TGG - Chr1:93268006-93268025 MsG0180005559.01.T01:three_prime_UTR 20.0%
!!! TATTGACCTTTATGTTTTAT+GGG - Chr1:93273215-93273234 MsG0180005559.01.T01:intron 20.0%
!!! TCAAGGGTTAAATATATTTT+TGG - Chr1:93270906-93270925 MsG0180005559.01.T01:intron 20.0%
!!! TCATCTTTTCAATTTTTTAC+CGG + Chr1:93268411-93268430 None:intergenic 20.0%
!!! TCTATTTTTACAAGATACAT+AGG - Chr1:93272316-93272335 MsG0180005559.01.T01:intron 20.0%
!!! TCTTTGATATAAGTATTGAT+TGG + Chr1:93271571-93271590 None:intergenic 20.0%
!!! TGAAGATGAAATTTTTTTGA+GGG - Chr1:93271306-93271325 MsG0180005559.01.T01:CDS 20.0%
!!! TGCTTTTATTAATAGAATCA+AGG - Chr1:93270889-93270908 MsG0180005559.01.T01:intron 20.0%
!!! TTCTAAATTGAGTATTCTTT+TGG - Chr1:93274292-93274311 MsG0180005559.01.T01:CDS 20.0%
! AAAATAGCACTAGAATTTCA+GGG + Chr1:93273377-93273396 None:intergenic 25.0%
! AAATCATAAATGCAACTGAT+AGG + Chr1:93269403-93269422 None:intergenic 25.0%
! AACCCATTCAGAAAAAAAAA+AGG + Chr1:93268012-93268031 None:intergenic 25.0%
! AATTGCAGAAACTTGAAAAT+GGG - Chr1:93275722-93275741 MsG0180005559.01.T01:intron 25.0%
! ACTGACAGAAAATTTACATT+TGG - Chr1:93273630-93273649 MsG0180005559.01.T01:CDS 25.0%
! ACTGTAAAACATACATGAAA+CGG + Chr1:93271651-93271670 None:intergenic 25.0%
! AGATGTTGAAAATATGTTCA+CGG + Chr1:93273424-93273443 None:intergenic 25.0%
! ATAAACTACTTGTGTAAACA+AGG + Chr1:93273808-93273827 None:intergenic 25.0%
! ATCAGAAGAGATTTCAATAT+TGG + Chr1:93273290-93273309 None:intergenic 25.0%
! ATGACAATGATATGTATGTA+TGG + Chr1:93269164-93269183 None:intergenic 25.0%
! ATGGTTTACTGTAATAAACT+TGG - Chr1:93273331-93273350 MsG0180005559.01.T01:intron 25.0%
! ATTACAAAGGTAAAGAAAGA+AGG + Chr1:93274038-93274057 None:intergenic 25.0%
! ATTTCTCTTATGAAAGTGAA+CGG - Chr1:93272119-93272138 MsG0180005559.01.T01:intron 25.0%
! ATTTGCAGATAGTAAATAAC+AGG - Chr1:93270040-93270059 MsG0180005559.01.T01:CDS 25.0%
! CAATACTTATATCAAAGAGA+AGG - Chr1:93271573-93271592 MsG0180005559.01.T01:intron 25.0%
! CATATAATATGTGAGTGTAA+AGG - Chr1:93275936-93275955 MsG0180005559.01.T01:intron 25.0%
! CATATATATTAGAGAAAGTG+AGG - Chr1:93272403-93272422 MsG0180005559.01.T01:intron 25.0%
! CTATTATCAGTATTTATTGG+TGG - Chr1:93273171-93273190 MsG0180005559.01.T01:intron 25.0%
! CTGACAGAAAATTTACATTT+GGG - Chr1:93273631-93273650 MsG0180005559.01.T01:CDS 25.0%
! GAAAAGGAAAAAAAAACCAT+TGG + Chr1:93275243-93275262 None:intergenic 25.0%
! GAAAAGTTGGCATATTTATA+GGG - Chr1:93271366-93271385 MsG0180005559.01.T01:intron 25.0%
! GAAATGTGATTATAACATCT+AGG - Chr1:93268582-93268601 MsG0180005559.01.T01:intron 25.0%
! GACAATGATATGTATGTATA+TGG + Chr1:93269162-93269181 None:intergenic 25.0%
! GAGTATTTATTTAAGTGGTT+TGG + Chr1:93269323-93269342 None:intergenic 25.0%
! GATTGTGTTAAAGGTTAATT+TGG - Chr1:93272849-93272868 MsG0180005559.01.T01:intron 25.0%
! GCTACAATTGTAATAAACAA+TGG - Chr1:93276382-93276401 MsG0180005559.01.T01:five_prime_UTR 25.0%
! GTAACTTAGATATAACACTA+CGG + Chr1:93276183-93276202 None:intergenic 25.0%
! GTATTTCCCATAAAACATAA+AGG + Chr1:93273224-93273243 None:intergenic 25.0%
! GTCATAAGATAAACAAGAAA+CGG + Chr1:93272622-93272641 None:intergenic 25.0%
! GTCATTTAAAGATATCTCAA+GGG + Chr1:93272186-93272205 None:intergenic 25.0%
! GTTAAGTGTAAAATATTGAC+TGG + Chr1:93275127-93275146 None:intergenic 25.0%
! TAAAATAGCACTAGAATTTC+AGG + Chr1:93273378-93273397 None:intergenic 25.0%
! TAAACCAAAAGATACTTCAA+AGG + Chr1:93269609-93269628 None:intergenic 25.0%
! TAATAAGATTGATCTACAAC+TGG + Chr1:93271509-93271528 None:intergenic 25.0%
! TAATGCAAAATCTAATCCAA+TGG - Chr1:93273107-93273126 MsG0180005559.01.T01:intron 25.0%
! TAGAAAAAGGAAAAATTGTC+AGG + Chr1:93269828-93269847 None:intergenic 25.0%
! TATAAATGGACAGATATTGA+CGG - Chr1:93272874-93272893 MsG0180005559.01.T01:intron 25.0%
! TATTATCATGTGATATATGC+AGG - Chr1:93272521-93272540 MsG0180005559.01.T01:intron 25.0%
! TCAGAAGAGATTTCAATATT+GGG + Chr1:93273289-93273308 None:intergenic 25.0%
! TCATATCATTCATATGACAA+TGG - Chr1:93273737-93273756 MsG0180005559.01.T01:CDS 25.0%
! TGTATCTATTGAATATTTGC+AGG - Chr1:93274737-93274756 MsG0180005559.01.T01:intron 25.0%
! TTAAGAAATCTGAAAAACAC+TGG + Chr1:93269645-93269664 None:intergenic 25.0%
! TTAGTCATTCTAGATGTTAT+CGG + Chr1:93272584-93272603 None:intergenic 25.0%
! TTCTATGATATATTCCGTAA+TGG + Chr1:93274919-93274938 None:intergenic 25.0%
! TTTATTGCCATTCAGTTATT+TGG - Chr1:93270418-93270437 MsG0180005559.01.T01:intron 25.0%
!! AACATGTTAATTCCATTTTG+CGG + Chr1:93271424-93271443 None:intergenic 25.0%
!! ATAAAACAATATTTGCTGCA+AGG + Chr1:93270403-93270422 None:intergenic 25.0%
!! ATCAGTTGCATTTATGATTT+TGG - Chr1:93269403-93269422 MsG0180005559.01.T01:CDS 25.0%
!! ATTTTTACAAGATACATAGG+AGG - Chr1:93272319-93272338 MsG0180005559.01.T01:intron 25.0%
!! CATCTTAAATTCAAGTTTCA+AGG - Chr1:93273439-93273458 MsG0180005559.01.T01:CDS 25.0%
!! CTATTGACCTTTATGTTTTA+TGG - Chr1:93273214-93273233 MsG0180005559.01.T01:intron 25.0%
!! GTATAATTTGTCTAAACTAC+GGG - Chr1:93272979-93272998 MsG0180005559.01.T01:intron 25.0%
!! TCAGTTGCATTTATGATTTT+GGG - Chr1:93269404-93269423 MsG0180005559.01.T01:CDS 25.0%
!! TCGAATTCTTATGTGAATTT+TGG - Chr1:93268747-93268766 MsG0180005559.01.T01:intron 25.0%
!! TCTGTTTTATCTCAAAATGA+TGG - Chr1:93268321-93268340 MsG0180005559.01.T01:three_prime_UTR 25.0%
!! TGTCATTTAAAGATATCTCA+AGG + Chr1:93272187-93272206 None:intergenic 25.0%
!! TTTAATACTTTCTTGGTTTG+AGG - Chr1:93271735-93271754 MsG0180005559.01.T01:intron 25.0%
!! TTTCTTTCTCTTGTTTGAAT+TGG - Chr1:93269535-93269554 MsG0180005559.01.T01:intron 25.0%
!!! AAATGTTTTCAAGTAGTTCA+TGG + Chr1:93274588-93274607 None:intergenic 25.0%
!!! AAGATTTTTGTTTGGAAAGT+TGG - Chr1:93270340-93270359 MsG0180005559.01.T01:intron 25.0%
!!! ACCATTTTAATTGATTGAGA+AGG - Chr1:93270683-93270702 MsG0180005559.01.T01:intron 25.0%
!!! ACTGCATTTTTTTTCTTTCT+TGG - Chr1:93275456-93275475 MsG0180005559.01.T01:intron 25.0%
!!! AGATTTTTTCAATACTCGTA+TGG - Chr1:93274764-93274783 MsG0180005559.01.T01:intron 25.0%
!!! ATTTGTTTTGAAAATCTCGA+TGG + Chr1:93267860-93267879 None:intergenic 25.0%
!!! CGAAAAGTTGGTATATTTAT+AGG + Chr1:93270934-93270953 None:intergenic 25.0%
!!! CTATGTGACTGTATTTTTTT+TGG - Chr1:93274964-93274983 MsG0180005559.01.T01:intron 25.0%
!!! CTGCATTTTTTTTCTTTCTT+GGG - Chr1:93275457-93275476 MsG0180005559.01.T01:intron 25.0%
!!! GATTTTAAGAGAAGTGATTT+TGG - Chr1:93268636-93268655 MsG0180005559.01.T01:intron 25.0%
!!! GTGAAGATGAAATTTTTTTG+AGG - Chr1:93271305-93271324 MsG0180005559.01.T01:CDS 25.0%
!!! TCTAGGGTTAAATATGTTTT+TGG + Chr1:93271393-93271412 None:intergenic 25.0%
!!! TGAAGATTTGTTATTCTCAA+AGG + Chr1:93270552-93270571 None:intergenic 25.0%
!!! TTTGTTGTTTTTAAAACACC+TGG - Chr1:93271953-93271972 MsG0180005559.01.T01:intron 25.0%
!!! TTTTTTTTTCTGAATGGGTT+CGG - Chr1:93268012-93268031 MsG0180005559.01.T01:three_prime_UTR 25.0%
AAAGTTGGAACTTATTTGAC+AGG - Chr1:93270355-93270374 MsG0180005559.01.T01:intron 30.0%
AAATGCAACTGATAGGAAAT+TGG + Chr1:93269396-93269415 None:intergenic 30.0%
AACGATAATTATAGCGTGTT+TGG + Chr1:93269109-93269128 None:intergenic 30.0%
AATATAGCATTAGACCAAGT+AGG + Chr1:93273526-93273545 None:intergenic 30.0%
AATGCAACTGATAGGAAATT+GGG + Chr1:93269395-93269414 None:intergenic 30.0%
AATTTACATTTGGGAAAGTC+TGG - Chr1:93273640-93273659 MsG0180005559.01.T01:CDS 30.0%
ACAAAATATCCAAAGTGGAA+AGG + Chr1:93271850-93271869 None:intergenic 30.0%
ACACTTATCACAAAACTAGA+AGG + Chr1:93271783-93271802 None:intergenic 30.0%
ACAGTATTGCTTTATGTGAT+TGG - Chr1:93274495-93274514 MsG0180005559.01.T01:CDS 30.0%
ACTCAATTTAGAAAAAGGAG+TGG + Chr1:93274285-93274304 None:intergenic 30.0%
ACTTATATCAAAGAGAAGGA+GGG - Chr1:93271577-93271596 MsG0180005559.01.T01:intron 30.0%
AGAAAATCAAATCAAACCTC+AGG + Chr1:93274410-93274429 None:intergenic 30.0%
AGATGTAGAAGAAATGTGTT+TGG + Chr1:93269864-93269883 None:intergenic 30.0%
ATAAATGGACAGATATTGAC+GGG - Chr1:93272875-93272894 MsG0180005559.01.T01:intron 30.0%
ATAACAGGTTAGTGCATTAT+TGG - Chr1:93270055-93270074 MsG0180005559.01.T01:CDS 30.0%
ATACTTCAAAGGAGAAAAGA+AGG + Chr1:93269598-93269617 None:intergenic 30.0%
ATCAACTGGAAACAAAGTTA+TGG + Chr1:93275344-93275363 None:intergenic 30.0%
ATTGCAGAAACTTGAAAATG+GGG - Chr1:93275723-93275742 MsG0180005559.01.T01:intron 30.0%
ATTTACATTTGGGAAAGTCT+GGG - Chr1:93273641-93273660 MsG0180005559.01.T01:CDS 30.0%
ATTTGAATGGCACATTACAA+AGG + Chr1:93274051-93274070 None:intergenic 30.0%
ATTTGATCTAAACGCGATTA+TGG + Chr1:93267885-93267904 None:intergenic 30.0%
CCTTAAAACCTAGCTATAAA+GGG - Chr1:93269290-93269309 MsG0180005559.01.T01:intron 30.0%
CGAAAAGTTGGCATATTTAT+AGG - Chr1:93271365-93271384 MsG0180005559.01.T01:intron 30.0%
CTAATGCTGTTATCCAAAAA+TGG + Chr1:93268251-93268270 None:intergenic 30.0%
CTTAAAACCTAGCTATAAAG+GGG - Chr1:93269291-93269310 MsG0180005559.01.T01:intron 30.0%
GAATTGCAGAAACTTGAAAA+TGG - Chr1:93275721-93275740 MsG0180005559.01.T01:intron 30.0%
GACAATTGACAATTATCACT+TGG + Chr1:93274833-93274852 None:intergenic 30.0%
GCCTTCTCAATCAATTAAAA+TGG + Chr1:93270687-93270706 None:intergenic 30.0%
GGAAACAATATTGTGATTTG+TGG - Chr1:93274886-93274905 MsG0180005559.01.T01:intron 30.0%
GTATCAAACAAAGAAGCAAA+AGG + Chr1:93270793-93270812 None:intergenic 30.0%
GTATCATTTGACAGATCTAA+GGG + Chr1:93272288-93272307 None:intergenic 30.0%
GTCAACACTTATTCAATACA+TGG + Chr1:93275989-93276008 None:intergenic 30.0%
GTTTACACAAGTAGTTTATG+TGG - Chr1:93273809-93273828 MsG0180005559.01.T01:intron 30.0%
TAAAACATACATGAAACGGA+AGG + Chr1:93271647-93271666 None:intergenic 30.0%
TAAACTTGGTCCAATGAAAT+AGG - Chr1:93273345-93273364 MsG0180005559.01.T01:intron 30.0%
TAAGCATATTAATTGGCCAT+TGG + Chr1:93273126-93273145 None:intergenic 30.0%
TAATTGTCAATTGTCGTTCT+TGG - Chr1:93274838-93274857 MsG0180005559.01.T01:intron 30.0%
TACACATACACAAACAGAAA+AGG + Chr1:93275397-93275416 None:intergenic 30.0%
TACTTATATCAAAGAGAAGG+AGG - Chr1:93271576-93271595 MsG0180005559.01.T01:intron 30.0%
TATATGTTCTCTTCTACCAA+TGG - Chr1:93275224-93275243 MsG0180005559.01.T01:CDS 30.0%
TCAAAATGATGGTAATAGCA+AGG - Chr1:93268332-93268351 MsG0180005559.01.T01:three_prime_UTR 30.0%
TCCTTAAAACCTAGCTATAA+AGG - Chr1:93269289-93269308 MsG0180005559.01.T01:intron 30.0%
TGATAGGAAATTGGGTATTA+GGG + Chr1:93269387-93269406 None:intergenic 30.0%
TGCTTGTATTACTACAAATG+TGG - Chr1:93275809-93275828 MsG0180005559.01.T01:intron 30.0%
TGTACACAAAATATCCAAAG+TGG + Chr1:93271855-93271874 None:intergenic 30.0%
TGTATCATTTGACAGATCTA+AGG + Chr1:93272289-93272308 None:intergenic 30.0%
TTACATAACAGAATGGTTAG+CGG + Chr1:93273876-93273895 None:intergenic 30.0%
TTATAGGGACTAGAAATTGA+AGG + Chr1:93270978-93270997 None:intergenic 30.0%
TTGTCAAACACATATACATG+CGG + Chr1:93270837-93270856 None:intergenic 30.0%
TTGTCAAACATACTAGACTT+AGG + Chr1:93275608-93275627 None:intergenic 30.0%
TTTCTGTTTGTGTATGTGTA+TGG - Chr1:93275397-93275416 MsG0180005559.01.T01:CDS 30.0%
! ACTTATCCCATCTTTTATGA+CGG - Chr1:93270167-93270186 MsG0180005559.01.T01:intron 30.0%
! AGAAATGGATTCACATCATT+TGG + Chr1:93269951-93269970 None:intergenic 30.0%
! AGCTTCAATTGATCCATTTT+TGG - Chr1:93268235-93268254 MsG0180005559.01.T01:three_prime_UTR 30.0%
! ATTGCTGCAAGATTTTTGTT+TGG - Chr1:93270332-93270351 MsG0180005559.01.T01:intron 30.0%
! ATTTCAATATTGGGCCTTTT+GGG + Chr1:93273280-93273299 None:intergenic 30.0%
! CAGTTGTATCTATCTTTTGA+CGG - Chr1:93268962-93268981 MsG0180005559.01.T01:intron 30.0%
! CCATTGAAAATCTTGTTATG+AGG - Chr1:93269701-93269720 MsG0180005559.01.T01:intron 30.0%
! CCTCATAACAAGATTTTCAA+TGG + Chr1:93269704-93269723 None:intergenic 30.0%
! CGGTAGAGTATTTATTTAAG+TGG + Chr1:93269328-93269347 None:intergenic 30.0%
! GGTCTAATGCTATATTTTGT+TGG - Chr1:93273530-93273549 MsG0180005559.01.T01:intron 30.0%
! TCACTGTTTTCAGTAGATAT+AGG + Chr1:93273708-93273727 None:intergenic 30.0%
! TGTTTTACAGTCAGACATTA+TGG - Chr1:93271660-93271679 MsG0180005559.01.T01:intron 30.0%
! TTCTTATTCACATAGTCTTG+AGG - Chr1:93275098-93275117 MsG0180005559.01.T01:intron 30.0%
! TTTGCATTAGTTTACCTACT+TGG - Chr1:93273509-93273528 MsG0180005559.01.T01:intron 30.0%
!! GTAGCTTTGATGAAGAAAAT+TGG - Chr1:93273589-93273608 MsG0180005559.01.T01:CDS 30.0%
!! GTTTTGGACTAGACAAAAAT+AGG + Chr1:93274459-93274478 None:intergenic 30.0%
!! TTTTGTTGGTCTGATCTAAT+AGG - Chr1:93273544-93273563 MsG0180005559.01.T01:intron 30.0%
!!! AGTGCTATTTTAGAAGTGTA+AGG - Chr1:93273386-93273405 MsG0180005559.01.T01:intron 30.0%
!!! AGTTTTTTATCCCATATGTC+TGG - Chr1:93275039-93275058 MsG0180005559.01.T01:intron 30.0%
!!! CTTTTATGATGGATAAATGC+TGG - Chr1:93275509-93275528 MsG0180005559.01.T01:intron 30.0%
!!! GTAGTTTTATCTCATTCTGA+GGG - Chr1:93276270-93276289 MsG0180005559.01.T01:five_prime_UTR 30.0%
!!! TATAGCTAGGTTTTAAGGAA+GGG + Chr1:93269288-93269307 None:intergenic 30.0%
!!! TGAACTGTTGTTTTCTCTTT+AGG - Chr1:93269184-93269203 MsG0180005559.01.T01:CDS 30.0%
!!! TGTAGTTTTATCTCATTCTG+AGG - Chr1:93276269-93276288 MsG0180005559.01.T01:five_prime_UTR 30.0%
!!! TTATAGCTAGGTTTTAAGGA+AGG + Chr1:93269289-93269308 None:intergenic 30.0%
!!! TTCTCCTTTGAAGTATCTTT+TGG - Chr1:93269602-93269621 MsG0180005559.01.T01:intron 30.0%
AAATACAGTCACATAGAAGC+AGG + Chr1:93274960-93274979 None:intergenic 35.0%
AAATTTCATTACCCGTCCTA+GGG - Chr1:93270127-93270146 MsG0180005559.01.T01:intron 35.0%
AACAAATCAGTGACCAAAAC+AGG + Chr1:93275695-93275714 None:intergenic 35.0%
AACTGCAACGATTGTGTTAA+AGG - Chr1:93272840-93272859 MsG0180005559.01.T01:intron 35.0%
AAGCATATGTGAGCATTCTA+CGG + Chr1:93270874-93270893 None:intergenic 35.0%
ACAAATCAGTGACCAAAACA+GGG + Chr1:93275694-93275713 None:intergenic 35.0%
ACAATCAATTGCTTGCTCTA+AGG + Chr1:93270633-93270652 None:intergenic 35.0%
ACAATGGATACTTGTAGAGT+TGG - Chr1:93273753-93273772 MsG0180005559.01.T01:CDS 35.0%
AGTATGAGTTGTCGGAAAAT+TGG + Chr1:93270604-93270623 None:intergenic 35.0%
ATAGGAGGTTAGTGTAATTG+AGG - Chr1:93272334-93272353 MsG0180005559.01.T01:intron 35.0%
ATGAAACGGAAGGAAAAAAG+CGG + Chr1:93271637-93271656 None:intergenic 35.0%
ATGCAATGCATATAGTTGTG+TGG + Chr1:93275638-93275657 None:intergenic 35.0%
ATGGGATAAAAAACTCCTCA+GGG + Chr1:93275034-93275053 None:intergenic 35.0%
ATTGAACTCATCACTTGTGT+CGG - Chr1:93268435-93268454 MsG0180005559.01.T01:CDS 35.0%
CAAAAGGCAACTTTATGTGT+CGG + Chr1:93270777-93270796 None:intergenic 35.0%
CAATATTCTTGCTTCTCATC+AGG - Chr1:93274113-93274132 MsG0180005559.01.T01:CDS 35.0%
CAGAATAACTCAATGACCAA+CGG + Chr1:93270019-93270038 None:intergenic 35.0%
CGAAAAACAATTGTCAAACC+AGG - Chr1:93268792-93268811 MsG0180005559.01.T01:intron 35.0%
CGAATCTTACAAAAAAGAGG+AGG - Chr1:93272365-93272384 MsG0180005559.01.T01:intron 35.0%
CTCTATACAATGCTCAAAGT+AGG - Chr1:93272698-93272717 MsG0180005559.01.T01:intron 35.0%
CTGATAGGAAATTGGGTATT+AGG + Chr1:93269388-93269407 None:intergenic 35.0%
CTTATATCAAAGAGAAGGAG+GGG - Chr1:93271578-93271597 MsG0180005559.01.T01:intron 35.0%
GAACTGACCAAATAACTGAA+TGG + Chr1:93270428-93270447 None:intergenic 35.0%
GAAGAAAAAGAAGAACGAGA+AGG + Chr1:93267792-93267811 None:intergenic 35.0%
GACAAATAAGTGAATAACGG+TGG + Chr1:93272244-93272263 None:intergenic 35.0%
GCAAAAGACAACTCAATTGA+AGG - Chr1:93274178-93274197 MsG0180005559.01.T01:intron 35.0%
GGATATCTCATCTTCATCTA+CGG + Chr1:93275968-93275987 None:intergenic 35.0%
GGTCTGATCTAATAGGATTA+GGG - Chr1:93273551-93273570 MsG0180005559.01.T01:intron 35.0%
GTATGAGTTGTCGGAAAATT+GGG + Chr1:93270603-93270622 None:intergenic 35.0%
GTCTCGGTTTAATACTTTCT+TGG - Chr1:93271728-93271747 MsG0180005559.01.T01:intron 35.0%
TAAATTTCATTACCCGTCCT+AGG - Chr1:93270126-93270145 MsG0180005559.01.T01:intron 35.0%
TAGAATCAAAGTCCGCAAAA+TGG - Chr1:93271409-93271428 MsG0180005559.01.T01:intron 35.0%
TAGGAGGTTAGTGTAATTGA+GGG - Chr1:93272335-93272354 MsG0180005559.01.T01:intron 35.0%
TATGGGATAAAAAACTCCTC+AGG + Chr1:93275035-93275054 None:intergenic 35.0%
TCAATGAGAAGGGAAAATGA+AGG + Chr1:93271806-93271825 None:intergenic 35.0%
TCACAAATTCCTTTCCACTT+TGG - Chr1:93271838-93271857 MsG0180005559.01.T01:intron 35.0%
TCGTTGAGGCTTATTACTTT+GGG - Chr1:93272482-93272501 MsG0180005559.01.T01:intron 35.0%
TCTAGCTGTATCAATGAGAA+GGG + Chr1:93271816-93271835 None:intergenic 35.0%
TGACTTCCGTCATAAAAGAT+GGG + Chr1:93270176-93270195 None:intergenic 35.0%
TGATAAGTATCCAAGGACTT+GGG - Chr1:93269259-93269278 MsG0180005559.01.T01:intron 35.0%
TGATCAGTCTTAAAATGCAG+TGG - Chr1:93270717-93270736 MsG0180005559.01.T01:intron 35.0%
TGGTCTGATCTAATAGGATT+AGG - Chr1:93273550-93273569 MsG0180005559.01.T01:intron 35.0%
TGTAGTAATACAAGCAGCTA+TGG + Chr1:93275805-93275824 None:intergenic 35.0%
TTATAGCATCAGTAGAAGTG+AGG - Chr1:93269737-93269756 MsG0180005559.01.T01:intron 35.0%
TTCGTTGAGGCTTATTACTT+TGG - Chr1:93272481-93272500 MsG0180005559.01.T01:intron 35.0%
TTGTATAGAGCTTCCAGAAT+CGG + Chr1:93272688-93272707 None:intergenic 35.0%
TTGTGAGATGAGCAGAATAT+AGG - Chr1:93271483-93271502 MsG0180005559.01.T01:CDS 35.0%
TTGTTGCTGATAAGTATCCA+AGG - Chr1:93269252-93269271 MsG0180005559.01.T01:intron 35.0%
TTTGAAGATCAACTTCGTTG+AGG - Chr1:93272468-93272487 MsG0180005559.01.T01:intron 35.0%
! AAACAGCTTTGTAGATGATG+TGG - Chr1:93274201-93274220 MsG0180005559.01.T01:intron 35.0%
! AGCTGTATTGAAGGATGTTT+TGG - Chr1:93268991-93269010 MsG0180005559.01.T01:intron 35.0%
! AGTTATTTGGTCAGTTCTAG+CGG - Chr1:93270431-93270450 MsG0180005559.01.T01:intron 35.0%
! ATTTTGCGGACTTTGATTCT+AGG + Chr1:93271410-93271429 None:intergenic 35.0%
! CCCTTTATAGCTAGGTTTTA+AGG + Chr1:93269293-93269312 None:intergenic 35.0%
! GATTTCAATATTGGGCCTTT+TGG + Chr1:93273281-93273300 None:intergenic 35.0%
! GCGTGTTAGATTTTACTTTC+AGG - Chr1:93269031-93269050 MsG0180005559.01.T01:intron 35.0%
! GCTGTATTGAAGGATGTTTT+GGG - Chr1:93268992-93269011 MsG0180005559.01.T01:intron 35.0%
! GCTTCTTTGTTTGATACACT+TGG - Chr1:93270796-93270815 MsG0180005559.01.T01:intron 35.0%
! GTGATGGAATGAAGGTAATA+AGG - Chr1:93274865-93274884 MsG0180005559.01.T01:intron 35.0%
! GTTGCATTTATGATTTTGGG+CGG - Chr1:93269407-93269426 MsG0180005559.01.T01:CDS 35.0%
! TTCTAGCTGTATCAATGAGA+AGG + Chr1:93271817-93271836 None:intergenic 35.0%
! TTGAAGCACTTGATTGAAAG+TGG - Chr1:93268935-93268954 MsG0180005559.01.T01:intron 35.0%
! TTTTGCGGACTTTGATTCTA+GGG + Chr1:93271409-93271428 None:intergenic 35.0%
!! CAGAAGTGTTAGAAGAGAAA+GGG - Chr1:93276226-93276245 MsG0180005559.01.T01:five_prime_UTR 35.0%
!! CAGAGATAACAAGCTCTAAA+AGG + Chr1:93274079-93274098 None:intergenic 35.0%
!! TCAGAAGTGTTAGAAGAGAA+AGG - Chr1:93276225-93276244 MsG0180005559.01.T01:five_prime_UTR 35.0%
!! TGGGAAATCTCTGAAATTCA+TGG + Chr1:93269079-93269098 None:intergenic 35.0%
!! TTAACAGTTAATGCCGATTC+TGG - Chr1:93272672-93272691 MsG0180005559.01.T01:intron 35.0%
!!! CCTCTTTTTTGTAAGATTCG+CGG + Chr1:93272365-93272384 None:intergenic 35.0%
!!! CTTTTAGAGCTTGTTATCTC+TGG - Chr1:93274077-93274096 MsG0180005559.01.T01:CDS 35.0%
!!! TAGTGCATTATTGGTTTTGC+AGG - Chr1:93270064-93270083 MsG0180005559.01.T01:CDS 35.0%
AAAATTTGTGTCACCTCCAG+TGG - Chr1:93275298-93275317 MsG0180005559.01.T01:CDS 40.0%
AAACTTGAAAATGGGGTGGA+GGG - Chr1:93275730-93275749 MsG0180005559.01.T01:intron 40.0%
AAATCTCGTTGCGTCTGATT+TGG + Chr1:93267965-93267984 None:intergenic 40.0%
AAATTCGCGGAGAGATGAAA+AGG + Chr1:93267908-93267927 None:intergenic 40.0%
AACACAATCGTTGCAGTTTC+AGG + Chr1:93272838-93272857 None:intergenic 40.0%
AATACAAGCTGCCAGACATA+TGG + Chr1:93275053-93275072 None:intergenic 40.0%
ACCATCAAGTGAACTCAAAC+AGG + Chr1:93273252-93273271 None:intergenic 40.0%
ACTTCTGAGTGTAGATCAAC+TGG + Chr1:93275358-93275377 None:intergenic 40.0%
AGAAGACGTTCTTTGTACCA+TGG + Chr1:93272905-93272924 None:intergenic 40.0%
AGCTTCCTCTCAATGTTCAA+TGG - Chr1:93268155-93268174 MsG0180005559.01.T01:three_prime_UTR 40.0%
AGGGTCAAGAAATCCAATAG+CGG - Chr1:93270457-93270476 MsG0180005559.01.T01:intron 40.0%
ATACAAGCTGCCAGACATAT+GGG + Chr1:93275052-93275071 None:intergenic 40.0%
ATGCATATGCACTCAAACGA+TGG + Chr1:93273966-93273985 None:intergenic 40.0%
ATGGATGCTCAAAGAGTTGA+TGG - Chr1:93274783-93274802 MsG0180005559.01.T01:intron 40.0%
ATGTCAACTCAGCTTCTATG+TGG - Chr1:93269912-93269931 MsG0180005559.01.T01:intron 40.0%
ATTGAATGTGAATCCACTGG+AGG + Chr1:93275314-93275333 None:intergenic 40.0%
ATTGAGGCTTGAGATACACT+AGG - Chr1:93275162-93275181 MsG0180005559.01.T01:intron 40.0%
ATTGTTCTGTTCGCGTAACA+TGG - Chr1:93273312-93273331 MsG0180005559.01.T01:intron 40.0%
CAAATCAGTGACCAAAACAG+GGG + Chr1:93275693-93275712 None:intergenic 40.0%
CAATGCAAGCATTCATAAGC+TGG - Chr1:93272783-93272802 MsG0180005559.01.T01:intron 40.0%
CACCAAGACATACTCCAAAA+AGG + Chr1:93272058-93272077 None:intergenic 40.0%
CCCAAGTAGATGCCAAAATT+CGG + Chr1:93269467-93269486 None:intergenic 40.0%
CCGCGAATCTTACAAAAAAG+AGG - Chr1:93272362-93272381 MsG0180005559.01.T01:intron 40.0%
CGACTCATATGCAACTTTAC+CGG - Chr1:93269767-93269786 MsG0180005559.01.T01:intron 40.0%
CTGACTTCCGTCATAAAAGA+TGG + Chr1:93270177-93270196 None:intergenic 40.0%
CTGATAAGTATCCAAGGACT+TGG - Chr1:93269258-93269277 MsG0180005559.01.T01:intron 40.0%
CTGCATTGTGTGAAAATTCG+CGG + Chr1:93267921-93267940 None:intergenic 40.0%
CTGTGTGTCAGTGTCATATT+CGG + Chr1:93268387-93268406 None:intergenic 40.0%
CTTCTTCATCAGACTTCTCT+CGG - Chr1:93272920-93272939 MsG0180005559.01.T01:intron 40.0%
CTTGAGATACACTAGGTCTA+GGG - Chr1:93275169-93275188 MsG0180005559.01.T01:intron 40.0%
GAGGGACTAAAACGAAAAGT+TGG - Chr1:93271353-93271372 MsG0180005559.01.T01:intron 40.0%
GAGGGACTAAAACGAAAAGT+TGG + Chr1:93271372-93271353 None:intergenic 40.0%
GAGTCTTTAACATCAACCGT+TGG - Chr1:93270000-93270019 MsG0180005559.01.T01:intron 40.0%
GATAAGTATCCAAGGACTTG+GGG - Chr1:93269260-93269279 MsG0180005559.01.T01:intron 40.0%
GGCAACTTATATTCCTCTAC+AGG - Chr1:93271974-93271993 MsG0180005559.01.T01:intron 40.0%
GTAGAGGAATATAAGTTGCC+AGG + Chr1:93271974-93271993 None:intergenic 40.0%
GTTCTTTCCCCTTTATAGCT+AGG + Chr1:93269301-93269320 None:intergenic 40.0%
TAGTACAAGCCTCAAGAAGT+CGG + Chr1:93274345-93274364 None:intergenic 40.0%
TAGTGTATGCAGTAATGCAC+AGG - Chr1:93274524-93274543 MsG0180005559.01.T01:intron 40.0%
TATGGATCAAGCTGATACTC+AGG + Chr1:93275787-93275806 None:intergenic 40.0%
TCATAAATGTGCTGTGAGTG+AGG - Chr1:93270517-93270536 MsG0180005559.01.T01:intron 40.0%
TCCATTGAATGTGAATCCAC+TGG + Chr1:93275317-93275336 None:intergenic 40.0%
TCCATTTCTTGATGCAGCAA+TGG - Chr1:93269962-93269981 MsG0180005559.01.T01:intron 40.0%
TGTCAATTGTCGTTCTTGGA+GGG - Chr1:93274842-93274861 MsG0180005559.01.T01:intron 40.0%
TTATTTGCAGCTTCGTGTCT+CGG - Chr1:93271712-93271731 MsG0180005559.01.T01:intron 40.0%
TTCGATCAACAGCATTAGTG+AGG + Chr1:93276074-93276093 None:intergenic 40.0%
TTGAGATACACTAGGTCTAG+GGG - Chr1:93275170-93275189 MsG0180005559.01.T01:intron 40.0%
TTGCTTTATGTGATTGGAGC+AGG - Chr1:93274501-93274520 MsG0180005559.01.T01:CDS 40.0%
TTGTCAATTGTCGTTCTTGG+AGG - Chr1:93274841-93274860 MsG0180005559.01.T01:intron 40.0%
! ACAGCTTTTGTAGATGTGCT+CGG - Chr1:93276036-93276055 MsG0180005559.01.T01:CDS 40.0%
! AGCAGCCTTTTCATAAACCA+AGG + Chr1:93268888-93268907 None:intergenic 40.0%
! GCAAGGAAATTCTGCCTTTT+TGG - Chr1:93272041-93272060 MsG0180005559.01.T01:intron 40.0%
! GCAGCCTTTTCATAAACCAA+GGG + Chr1:93268887-93268906 None:intergenic 40.0%
! GCGGACTGATATAGATACAT+TGG - Chr1:93272077-93272096 MsG0180005559.01.T01:intron 40.0%
! TATCTGATCGGGACTTTTGT+CGG - Chr1:93268085-93268104 MsG0180005559.01.T01:three_prime_UTR 40.0%
! TCCAGTGGATTCACATTCAA+TGG - Chr1:93275313-93275332 MsG0180005559.01.T01:CDS 40.0%
! TCCTGTTTGAGTTCACTTGA+TGG - Chr1:93273248-93273267 MsG0180005559.01.T01:intron 40.0%
! TCTTTTACGTGAGCAGTGAA+CGG - Chr1:93271689-93271708 MsG0180005559.01.T01:intron 40.0%
!! ACTGATTTCTTCCCCTGTTT+TGG - Chr1:93275679-93275698 MsG0180005559.01.T01:intron 40.0%
!! AGATTTACACCGACTTCTTG+AGG - Chr1:93274333-93274352 MsG0180005559.01.T01:CDS 40.0%
!! CAGCTCAATCAAGAGTATTG+AGG - Chr1:93275146-93275165 MsG0180005559.01.T01:intron 40.0%
!! CCGAATTTTGGCATCTACTT+GGG - Chr1:93269464-93269483 MsG0180005559.01.T01:intron 40.0%
!! CTTGATGGTGTTTACCCAAA+AGG - Chr1:93273263-93273282 MsG0180005559.01.T01:intron 40.0%
!! GTATTGAAGGATGTTTTGGG+AGG - Chr1:93268995-93269014 MsG0180005559.01.T01:intron 40.0%
!!! ATAGCGTGTTTGGTTTTGCA+TGG + Chr1:93269099-93269118 None:intergenic 40.0%
!!! TAGCGTGTTTGGTTTTGCAT+GGG + Chr1:93269098-93269117 None:intergenic 40.0%
!!! TGCCTTTTTGGAGTATGTCT+TGG - Chr1:93272053-93272072 MsG0180005559.01.T01:intron 40.0%
!!! TTTTGGAGTATGTCTTGGTG+CGG - Chr1:93272058-93272077 MsG0180005559.01.T01:intron 40.0%
!!! TTTTTTCTGAATGGGTTCGG+TGG - Chr1:93268015-93268034 MsG0180005559.01.T01:three_prime_UTR 40.0%
AACAGCATTAGTGAGGACTG+AGG + Chr1:93276067-93276086 None:intergenic 45.0%
AACTTGAAAATGGGGTGGAG+GGG - Chr1:93275731-93275750 MsG0180005559.01.T01:intron 45.0%
AAGCGTGGATGACTCTTGTA+TGG + Chr1:93274565-93274584 None:intergenic 45.0%
AAGTTGCCAGACATGTTGTG+TGG + Chr1:93273921-93273940 None:intergenic 45.0%
AATCAAACCTCAGGATTCCG+AGG + Chr1:93274401-93274420 None:intergenic 45.0%
ACATCATTTGGTCCAGGAGA+TGG + Chr1:93269939-93269958 None:intergenic 45.0%
AGGGCAGGATCCTATTTCAT+TGG + Chr1:93273358-93273377 None:intergenic 45.0%
AGTAGTGTGCTACAGAGAGT+TGG - Chr1:93270197-93270216 MsG0180005559.01.T01:intron 45.0%
ATCGAGTAGTATGCGATGCT+CGG + Chr1:93269348-93269367 None:intergenic 45.0%
ATTGAATGGAACCCTAGGAC+GGG + Chr1:93270141-93270160 None:intergenic 45.0%
CAAAAGCTTTGCAAGATGCC+TGG + Chr1:93268813-93268832 None:intergenic 45.0%
CACAACATGTCTGGCAACTT+TGG - Chr1:93273921-93273940 MsG0180005559.01.T01:intron 45.0%
CATCGCATACTACTCGATGT+GGG - Chr1:93269350-93269369 MsG0180005559.01.T01:intron 45.0%
CGGTGATGAAGCTGTATTGA+AGG - Chr1:93268982-93269001 MsG0180005559.01.T01:intron 45.0%
CTATCTCCACACAACATGTC+TGG - Chr1:93273912-93273931 MsG0180005559.01.T01:intron 45.0%
CTGCTTTACTCGTTGTTGCA+AGG - Chr1:93272024-93272043 MsG0180005559.01.T01:intron 45.0%
GAAACTTGAAAATGGGGTGG+AGG - Chr1:93275729-93275748 MsG0180005559.01.T01:intron 45.0%
GAGGTTAGTGTAATTGAGGG+AGG - Chr1:93272338-93272357 MsG0180005559.01.T01:intron 45.0%
GATTGAATGGAACCCTAGGA+CGG + Chr1:93270142-93270161 None:intergenic 45.0%
GCAACAACGAGTAAAGCAGT+AGG + Chr1:93272023-93272042 None:intergenic 45.0%
GCAGAAACTTGAAAATGGGG+TGG - Chr1:93275726-93275745 MsG0180005559.01.T01:intron 45.0%
GCCAAAACTCCGATGAGAAA+GGG + Chr1:93268123-93268142 None:intergenic 45.0%
GCCATTGCTGCATCAAGAAA+TGG + Chr1:93269966-93269985 None:intergenic 45.0%
GCTGCTAATGCAGTGTACAT+CGG - Chr1:93268902-93268921 MsG0180005559.01.T01:intron 45.0%
GCTTGAGATACACTAGGTCT+AGG - Chr1:93275168-93275187 MsG0180005559.01.T01:intron 45.0%
GGATAAGTTGCCCGATTGAA+TGG + Chr1:93270155-93270174 None:intergenic 45.0%
GGATTCACATCATTTGGTCC+AGG + Chr1:93269945-93269964 None:intergenic 45.0%
GTCAATTGTCGTTCTTGGAG+GGG - Chr1:93274843-93274862 MsG0180005559.01.T01:intron 45.0%
GTCCTAGGGTTCCATTCAAT+CGG - Chr1:93270141-93270160 MsG0180005559.01.T01:intron 45.0%
TAGCACTAGAATTTCAGGGC+AGG + Chr1:93273373-93273392 None:intergenic 45.0%
TATGACACTGACACACAGAC+CGG - Chr1:93268389-93268408 MsG0180005559.01.T01:three_prime_UTR 45.0%
TCAAGTAGTTCATGGAAGCG+TGG + Chr1:93274580-93274599 None:intergenic 45.0%
TCCTAGGGTTCCATTCAATC+GGG - Chr1:93270142-93270161 MsG0180005559.01.T01:intron 45.0%
TCTGGCAACTTTGGCTAACA+TGG - Chr1:93273930-93273949 MsG0180005559.01.T01:intron 45.0%
TGAAGACTGCTATCCGCTAT+TGG + Chr1:93270473-93270492 None:intergenic 45.0%
TGAGTCGTTCCCTTTCTCAT+CGG - Chr1:93268111-93268130 MsG0180005559.01.T01:three_prime_UTR 45.0%
TGCCAAAACTCCGATGAGAA+AGG + Chr1:93268124-93268143 None:intergenic 45.0%
TTCCGACAACTCATACTGCA+AGG - Chr1:93270607-93270626 MsG0180005559.01.T01:intron 45.0%
TTTGTGGTGCGCTTCCATTA+CGG - Chr1:93274902-93274921 MsG0180005559.01.T01:intron 45.0%
! AAACGGCTTGAGCCGAATTT+TGG - Chr1:93269452-93269471 MsG0180005559.01.T01:CDS 45.0%
! AGATATTGACGGGTGTTCCA+TGG - Chr1:93272885-93272904 MsG0180005559.01.T01:intron 45.0%
! AGCTCAAAGAAGCATACCAG+TGG + Chr1:93275079-93275098 None:intergenic 45.0%
! CAACAAGCTTGCGAGCTTTT+GGG - Chr1:93268193-93268212 MsG0180005559.01.T01:three_prime_UTR 45.0%
! GAGGGGAGCACATTTCAAAA+TGG - Chr1:93275748-93275767 MsG0180005559.01.T01:intron 45.0%
! GCCTTTTCATAAACCAAGGG+CGG + Chr1:93268884-93268903 None:intergenic 45.0%
! GCTCAAAGAAGCATACCAGT+GGG + Chr1:93275078-93275097 None:intergenic 45.0%
! TCAACAAGCTTGCGAGCTTT+TGG - Chr1:93268192-93268211 MsG0180005559.01.T01:three_prime_UTR 45.0%
! TCCCTTTCTCATCGGAGTTT+TGG - Chr1:93268119-93268138 MsG0180005559.01.T01:three_prime_UTR 45.0%
! TGCGTGAGAGCATATCGAAA+AGG + Chr1:93274005-93274024 None:intergenic 45.0%
! TTTGAGGCTCTAGTATCTCG+TGG - Chr1:93271751-93271770 MsG0180005559.01.T01:intron 45.0%
!! CTCAAAGAGTTGATGGTGAC+TGG - Chr1:93274790-93274809 MsG0180005559.01.T01:intron 45.0%
!! GCCGAATTTTGGCATCTACT+TGG - Chr1:93269463-93269482 MsG0180005559.01.T01:intron 45.0%
!! GTGTCACAAAAGCACCAAGA+TGG + Chr1:93274242-93274261 None:intergenic 45.0%
!!! AAAAAATTCTAATTTTTTTT+GGG - Chr1:93271190-93271209 MsG0180005559.01.T01:intron 5.0%
!!! ATTGATTAATTTAATTTTTA+TGG - Chr1:93268550-93268569 MsG0180005559.01.T01:intron 5.0%
!!! TAAAAAATTCTAAATTTTTT+GGG + Chr1:93271098-93271117 None:intergenic 5.0%
!!! TAAAAAATTCTAATTTTTTT+TGG - Chr1:93271189-93271208 MsG0180005559.01.T01:intron 5.0%
!!! TTAAAAAATTCTAAATTTTT+TGG + Chr1:93271099-93271118 None:intergenic 5.0%
AGCTGGTATGAACTGGTGAC+TGG - Chr1:93270226-93270245 MsG0180005559.01.T01:CDS 50.0%
AGTGGATCGTGTAGACATCG+AGG - Chr1:93270735-93270754 MsG0180005559.01.T01:intron 50.0%
ATCAGATACTCCGCCGTTTC+CGG + Chr1:93268073-93268092 None:intergenic 50.0%
ATTTGGGAAAGTCTGGGAGC+TGG - Chr1:93273647-93273666 MsG0180005559.01.T01:CDS 50.0%
CAGGAGTCCATGTCTACTTC+TGG - Chr1:93268854-93268873 MsG0180005559.01.T01:intron 50.0%
CATCAGCTAAGCACCTGTAG+AGG + Chr1:93271990-93272009 None:intergenic 50.0%
CCTGCAAGTAGCATGCTAGA+TGG + Chr1:93268838-93268857 None:intergenic 50.0%
CTACAGGTGCTTAGCTGATG+AGG - Chr1:93271990-93272009 MsG0180005559.01.T01:intron 50.0%
CTTCTATGTGGTCCATCTCC+TGG - Chr1:93269924-93269943 MsG0180005559.01.T01:intron 50.0%
GACTTCTCTCGGTTCTCTCA+TGG - Chr1:93272931-93272950 MsG0180005559.01.T01:intron 50.0%
GAGAATTCACCACGCTTACG+CGG + Chr1:93268049-93268068 None:intergenic 50.0%
GCACTCAAACGATGGACATG+AGG + Chr1:93273958-93273977 None:intergenic 50.0%
GCAGGCCATTGAACATTGAG+AGG + Chr1:93268163-93268182 None:intergenic 50.0%
GCATCGCATACTACTCGATG+TGG - Chr1:93269349-93269368 MsG0180005559.01.T01:intron 50.0%
GCCGCCCTTGGTTTATGAAA+AGG - Chr1:93268880-93268899 MsG0180005559.01.T01:CDS 50.0%
GGCAGCTTGTATTATCCCAC+TGG - Chr1:93275060-93275079 MsG0180005559.01.T01:intron 50.0%
GGCCTTGCAGTATGAGTTGT+CGG + Chr1:93270612-93270631 None:intergenic 50.0%
GTATGCAGTAATGCACAGGC+AGG - Chr1:93274528-93274547 MsG0180005559.01.T01:intron 50.0%
GTGGATCGTGTAGACATCGA+GGG - Chr1:93270736-93270755 MsG0180005559.01.T01:intron 50.0%
GTTCTGCAGCTGGTATGAAC+TGG - Chr1:93270219-93270238 MsG0180005559.01.T01:CDS 50.0%
TAAGCGTGGTGAATTCTCGC+CGG - Chr1:93268051-93268070 MsG0180005559.01.T01:three_prime_UTR 50.0%
TCCTGACTTATGCACTGCCT+CGG - Chr1:93274381-93274400 MsG0180005559.01.T01:intron 50.0%
TCTTGATGCAGCAATGGCTC+AGG - Chr1:93269968-93269987 MsG0180005559.01.T01:intron 50.0%
TGAACAAGAGAGACACCCTG+AGG - Chr1:93275016-93275035 MsG0180005559.01.T01:intron 50.0%
TGGTGAATTCTCGCCGGAAA+CGG - Chr1:93268057-93268076 MsG0180005559.01.T01:three_prime_UTR 50.0%
TTTGGGAAAGTCTGGGAGCT+GGG - Chr1:93273648-93273667 MsG0180005559.01.T01:CDS 50.0%
! AAACGGCGGAGTATCTGATC+GGG - Chr1:93268074-93268093 MsG0180005559.01.T01:three_prime_UTR 50.0%
! CCATCACAAGTGTCGTGCTA+CGG - Chr1:93268470-93268489 MsG0180005559.01.T01:CDS 50.0%
! CCATCTAGCATGCTACTTGC+AGG - Chr1:93268835-93268854 MsG0180005559.01.T01:intron 50.0%
! GAAACGGCGGAGTATCTGAT+CGG - Chr1:93268073-93268092 MsG0180005559.01.T01:three_prime_UTR 50.0%
! GCTTGTTGAACACGTTCAGC+AGG + Chr1:93268181-93268200 None:intergenic 50.0%
! TGGTCAGTTCTAGCGGTGAA+GGG - Chr1:93270438-93270457 MsG0180005559.01.T01:intron 50.0%
! TTGGTCAGTTCTAGCGGTGA+AGG - Chr1:93270437-93270456 MsG0180005559.01.T01:intron 50.0%
!! CTCGTTGCGTCTGATTTGGT+GGG + Chr1:93267961-93267980 None:intergenic 50.0%
!! TCTCGTTGCGTCTGATTTGG+TGG + Chr1:93267962-93267981 None:intergenic 50.0%
!! TTGGAGGGGTGATGGAATGA+AGG - Chr1:93274857-93274876 MsG0180005559.01.T01:intron 50.0%
ATCGAGGGCAATGCACACAG+TGG - Chr1:93270751-93270770 MsG0180005559.01.T01:intron 55.0%
CCGTAGCACGACACTTGTGA+TGG + Chr1:93268473-93268492 None:intergenic 55.0%
CGGCACACCAGAAGTAGACA+TGG + Chr1:93268864-93268883 None:intergenic 55.0%
CTGGGAGCTGGGTGTAATGA+AGG - Chr1:93273659-93273678 MsG0180005559.01.T01:CDS 55.0%
GCCCGATTGAATGGAACCCT+AGG + Chr1:93270146-93270165 None:intergenic 55.0%
TCCGAGGCAGTGCATAAGTC+AGG + Chr1:93274385-93274404 None:intergenic 55.0%
TGAATTCTCGCCGGAAACGG+CGG - Chr1:93268060-93268079 MsG0180005559.01.T01:three_prime_UTR 55.0%
TGTCGTTCTTGGAGGGGTGA+TGG - Chr1:93274849-93274868 MsG0180005559.01.T01:intron 55.0%
TTGCAGGACAGTGCTCTGGT+TGG - Chr1:93270080-93270099 MsG0180005559.01.T01:intron 55.0%
! GGTTTTGCAGGACAGTGCTC+TGG - Chr1:93270076-93270095 MsG0180005559.01.T01:CDS 55.0%
! TCACAAGTGTCGTGCTACGG+AGG - Chr1:93268473-93268492 MsG0180005559.01.T01:CDS 55.0%
!! CAGAGAGTTGGTTCTGCAGC+TGG - Chr1:93270209-93270228 MsG0180005559.01.T01:CDS 55.0%
AGTGTCGTGCTACGGAGGCT+AGG - Chr1:93268478-93268497 MsG0180005559.01.T01:CDS 60.0%
GGAAGGGTTCCCCAAGTCCT+TGG + Chr1:93269272-93269291 None:intergenic 60.0%
TACTTCTGGTGTGCCGCCCT+TGG - Chr1:93268868-93268887 MsG0180005559.01.T01:CDS 60.0%
TGCACTGCCTCGGAATCCTG+AGG - Chr1:93274391-93274410 MsG0180005559.01.T01:intron 60.0%
GCGTCAACGCCGCGTAAGCG+TGG - Chr1:93268037-93268056 MsG0180005559.01.T01:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 93267775 93276458 93267775 ID=MsG0180005559.01;Name=MsG0180005559.01
Chr1 mRNA 93267775 93276458 93267775 ID=MsG0180005559.01.T01;Parent=MsG0180005559.01;Name=MsG0180005559.01.T01;_AED=0.33;_eAED=0.33;_QI=250|0.87|0.88|1|1|1|17|651|687
Chr1 exon 93267775 93268503 93267775 ID=MsG0180005559.01.T01:exon:19104;Parent=MsG0180005559.01.T01
Chr1 exon 93268858 93268915 93268858 ID=MsG0180005559.01.T01:exon:19103;Parent=MsG0180005559.01.T01
Chr1 exon 93269152 93269243 93269152 ID=MsG0180005559.01.T01:exon:19102;Parent=MsG0180005559.01.T01
Chr1 exon 93269355 93269474 93269355 ID=MsG0180005559.01.T01:exon:19101;Parent=MsG0180005559.01.T01
Chr1 exon 93269821 93269913 93269821 ID=MsG0180005559.01.T01:exon:19100;Parent=MsG0180005559.01.T01
Chr1 exon 93270011 93270098 93270011 ID=MsG0180005559.01.T01:exon:19099;Parent=MsG0180005559.01.T01
Chr1 exon 93270208 93270326 93270208 ID=MsG0180005559.01.T01:exon:19098;Parent=MsG0180005559.01.T01
Chr1 exon 93271233 93271346 93271233 ID=MsG0180005559.01.T01:exon:19097;Parent=MsG0180005559.01.T01
Chr1 exon 93271429 93271554 93271429 ID=MsG0180005559.01.T01:exon:19096;Parent=MsG0180005559.01.T01
Chr1 exon 93272135 93272237 93272135 ID=MsG0180005559.01.T01:exon:19095;Parent=MsG0180005559.01.T01
Chr1 exon 93273412 93273496 93273412 ID=MsG0180005559.01.T01:exon:19094;Parent=MsG0180005559.01.T01
Chr1 exon 93273577 93273800 93273577 ID=MsG0180005559.01.T01:exon:19093;Parent=MsG0180005559.01.T01
Chr1 exon 93273993 93274147 93273993 ID=MsG0180005559.01.T01:exon:19092;Parent=MsG0180005559.01.T01
Chr1 exon 93274244 93274373 93274244 ID=MsG0180005559.01.T01:exon:19091;Parent=MsG0180005559.01.T01
Chr1 exon 93274475 93274538 93274475 ID=MsG0180005559.01.T01:exon:19090;Parent=MsG0180005559.01.T01
Chr1 exon 93275217 93275441 93275217 ID=MsG0180005559.01.T01:exon:19089;Parent=MsG0180005559.01.T01
Chr1 exon 93276019 93276458 93276019 ID=MsG0180005559.01.T01:exon:19088;Parent=MsG0180005559.01.T01
Chr1 five_prime_UTR 93276209 93276458 93276209 ID=MsG0180005559.01.T01:five_prime_utr;Parent=MsG0180005559.01.T01
Chr1 CDS 93276019 93276208 93276019 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93275217 93275441 93275217 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93274475 93274538 93274475 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93274244 93274373 93274244 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93273993 93274147 93273993 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93273577 93273800 93273577 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93273412 93273496 93273412 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93272135 93272237 93272135 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93271429 93271554 93271429 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93271233 93271346 93271233 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93270208 93270326 93270208 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93270011 93270098 93270011 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93269821 93269913 93269821 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93269355 93269474 93269355 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93269152 93269243 93269152 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93268858 93268915 93268858 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 CDS 93268426 93268503 93268426 ID=MsG0180005559.01.T01:cds;Parent=MsG0180005559.01.T01
Chr1 three_prime_UTR 93267775 93268425 93267775 ID=MsG0180005559.01.T01:three_prime_utr;Parent=MsG0180005559.01.T01
Gene Sequence

>MsG0180005559.01.T01

ATGGGTTCGGTGGCGTCAACGCCGCGTAAGCGTGGTGAATTCTCGCCGGAAACGGCGGAGTATCTGATCGGGACTTTTGTCGGTGATGAGTCGTTCCCTTTCTCATCGGAGTTTTGGCAGAAATTGCTTGAGCTTCCTCTCAATGTTCAATGGCCTGCTGAACGTGTTCAACAAGCTTGCGAGCTTTTGGCGAAAAACAATTGTCAAACCAGGCATCTTGCAAAGCTTTTGTTCCATCTAGCATGCTACTTGCAGGAGTCCATGTCTACTTCTGGTGTGCCGCCCTTGGTTTATGAAAAGGCTGCTAATGCAGTGTACATCGGTTCTGTGTTTTTGAAGCACTTGATTGAAAGTGGTATGCAGTTGTATCTATCTTTTGACGGTGATGAAGCTGTATTGAAGGATGTTTTGGGAGATCAAACCATTGAAAATCTTGTTATGAGGAATGTACTGAACTTTATAGCATCAGTAGAAGTGAGTCCAAACACATTTCTTCTACATCTAGAGCTGCTTAATTTCTTGATTATTACAATGTCAACTCAGCTTCTATGTGGTCCATCTCCTGGACCAAATGATGTGAATCCATTTCTTGATGCAGCAATGGCTCAGGACAGTGCTCTGGTTGGTTTAGTTGTTCGCAAATTGCTTCTAAATTTCATTACCCGTCCTAGGGTTCCATTCAATCGGGCAACTTATCCCATCTTTTATGACGGAAGTCAGAGTAGTGTGCTACAGAGAGTTGGTTCTGCAGCTGGTATGAACTGTTATTTGGTCAGTTCTAGCGGTGAAGGGTCAAGAAATCCAATAGCGGATAGCAGTCTTCACGTGCTTCTTATTCTCATTCATTATCATAAATGTGCTGTGAGTGAGGACTACTCTGCCTTTGAGAATAACAAATCTTCAGCTTCAGATTCATTAATCAAAGAAAATGCCCAATTTTCCGACAACTCATACTGCAAGGCCTTAGAGCAAGCAATTGATTGTGAATTGGATCGTGTAGACATCGAGGGCAATGCACACAGTGGCCGACACATAAAGTTGCCTTTTGCTTCTTTGTTTGATACACTTGGCATGTGCTTAGCTGATGAGGCAGCTGTCCTACTGCTTTACTCGTTGTTGCAAGGAAATTCTGCCTTTTTGGAGTATGTCTTGGTGCGGACTGATATAGATACATTGTTAATGCCGATTCTGGAAGCTCTATACAATGCTCAAAGTAGGACAGCTAATCAAATATACATGTTGCTGATTATATGTCTTATACTTAGTCAAGATTCTTCTTTCAATGCAAGCATTCATAAGCTGATATTGACGGGTGTTCCATGGTACAAAGAACGTCTTCTTCATCAGACTTCTCTCGGTTCTCTCATGGTCATAATTCTTATCAGAACTGTACAGTATAATTTGTCTAAACTACGGGATGTCTATCTCCACACAACATGTCTGGCAACTTTGGCTAACATGGCACCTCATGTCCATCGTTTGAGTGCATATGCATCTCAGAGACTAGTCAGCCTTTTCGATATGCTCTCACGCAAGTATAACAAATTAGCTGATCGCAGAGATAATAAGCTTCATATTGCAAAAGACAACTCAATTGAAGGAAACAGCTTTGTAGATGATGTGTCAACTGAAATGCAGATTTACACCGACTTCTTGAGGCTTGTACTAGAAATAATAAATGCAATCCTGACTTATGCACTGCCTCGGAATCCTGAGGTATTAGATTTTTTCAATACTCGTATGGATGCTCAAAGAGTTGATGGTGACTGGTCAGTCAATGAAGTGCTCCAAGTGATAATTGTCAATTGTCGTTCTTGGAGGGGTGATGGAATGAAGATGTTTACTCAACTGCGCTTCATGTATGAACAAGAGAGACACCCTGAGGAGTTTTTTATCCCATATGTCTGGCAGCTTGTATTATCCCACTGTGGATTCACATTCAATGGAGAAGCCATAACTTTGTTTCCAGTTGATCTACACTCAGAAAAACTTGAAAATGGGGTGGAGGGGAGCACATTTCAAAATGGCGATTTTGACAAGCCTGAGTATCAGCTTGATCCATAG

Protein sequence

>MsG0180005559.01.T01

MGSVASTPRKRGEFSPETAEYLIGTFVGDESFPFSSEFWQKLLELPLNVQWPAERVQQACELLAKNNCQTRHLAKLLFHLACYLQESMSTSGVPPLVYEKAANAVYIGSVFLKHLIESGMQLYLSFDGDEAVLKDVLGDQTIENLVMRNVLNFIASVEVSPNTFLLHLELLNFLIITMSTQLLCGPSPGPNDVNPFLDAAMAQDSALVGLVVRKLLLNFITRPRVPFNRATYPIFYDGSQSSVLQRVGSAAGMNCYLVSSSGEGSRNPIADSSLHVLLILIHYHKCAVSEDYSAFENNKSSASDSLIKENAQFSDNSYCKALEQAIDCELDRVDIEGNAHSGRHIKLPFASLFDTLGMCLADEAAVLLLYSLLQGNSAFLEYVLVRTDIDTLLMPILEALYNAQSRTANQIYMLLIICLILSQDSSFNASIHKLILTGVPWYKERLLHQTSLGSLMVIILIRTVQYNLSKLRDVYLHTTCLATLANMAPHVHRLSAYASQRLVSLFDMLSRKYNKLADRRDNKLHIAKDNSIEGNSFVDDVSTEMQIYTDFLRLVLEIINAILTYALPRNPEVLDFFNTRMDAQRVDGDWSVNEVLQVIIVNCRSWRGDGMKMFTQLRFMYEQERHPEEFFIPYVWQLVLSHCGFTFNGEAITLFPVDLHSEKLENGVEGSTFQNGDFDKPEYQLDP*