AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010459.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010459.01.T01 MTR_2g084550 76.054 522 51 7 1 479 1 491 0.0 728
MsG0280010459.01.T01 MTR_4g056420 60.041 493 131 6 6 457 1 468 0.0 545
MsG0280010459.01.T01 MTR_7g102750 49.023 512 182 11 9 473 10 489 5.64e-151 440
MsG0280010459.01.T01 MTR_1g061940 48.447 483 178 11 5 445 9 462 9.18e-142 416
MsG0280010459.01.T01 MTR_7g102750 48.630 438 147 10 9 400 10 415 1.28e-124 370
MsG0280010459.01.T01 MTR_1g078240 34.337 498 248 16 18 476 19 476 5.54e-71 233
MsG0280010459.01.T01 MTR_7g080230 32.941 510 258 17 8 473 5 474 1.77e-69 229
MsG0280010459.01.T01 MTR_1g078240 34.269 499 248 17 18 476 19 477 4.03e-69 228
MsG0280010459.01.T01 MTR_7g021510 31.466 464 238 14 19 437 18 446 4.71e-64 215
MsG0280010459.01.T01 MTR_5g072060 61.749 183 40 4 109 275 359 527 7.81e-54 191
MsG0280010459.01.T01 MTR_1g078240 37.143 315 156 8 18 301 19 322 3.58e-53 184
MsG0280010459.01.T01 MTR_7g080230 31.034 406 204 14 110 473 33 404 2.69e-44 160
MsG0280010459.01.T01 MTR_5g016260 30.256 390 239 12 52 426 61 432 2.85e-36 141
MsG0280010459.01.T01 MTR_5g016260 30.256 390 239 12 52 426 61 432 8.97e-36 140
MsG0280010459.01.T01 MTR_4g095270 29.024 379 207 11 77 426 79 424 1.59e-34 136
MsG0280010459.01.T01 MTR_4g095270 29.570 372 214 11 77 426 79 424 2.65e-34 136
MsG0280010459.01.T01 MTR_6g084710 25.799 407 240 17 65 435 180 560 4.39e-28 117
MsG0280010459.01.T01 MTR_1g029810 26.551 403 229 15 65 432 46 416 3.22e-26 111
MsG0280010459.01.T01 MTR_1g029810 26.768 396 223 15 65 425 46 409 6.04e-26 110
MsG0280010459.01.T01 MTR_4g023650 27.551 392 217 16 74 426 57 420 2.27e-25 108
MsG0280010459.01.T01 MTR_4g023630 26.031 388 222 13 77 426 60 420 2.60e-23 102
MsG0280010459.01.T01 MTR_6g084710 25.137 366 212 15 35 353 139 489 1.95e-21 97.4
MsG0280010459.01.T01 MTR_3g006820 24.181 397 216 18 76 426 56 413 2.30e-20 93.6
MsG0280010459.01.T01 MTR_3g097150 29.961 257 129 13 77 298 101 341 2.00e-19 90.9
MsG0280010459.01.T01 MTR_0221s0060 43.307 127 41 2 78 173 9 135 2.44e-19 84.7
MsG0280010459.01.T01 MTR_8g075010 25.347 505 259 21 42 479 63 516 1.16e-17 85.9
MsG0280010459.01.T01 MTR_5g080890 27.296 392 199 18 77 426 85 432 2.02e-17 84.7
MsG0280010459.01.T01 MTR_5g080960 26.396 394 200 19 77 426 85 432 8.55e-17 82.8
MsG0280010459.01.T01 MTR_2g059490 26.031 388 210 17 79 426 59 409 1.11e-15 79.3
MsG0280010459.01.T01 MTR_5g022880 24.330 485 276 21 43 473 72 519 1.56e-15 79.3
MsG0280010459.01.T01 MTR_5g091130 29.545 264 138 10 77 298 190 447 6.00e-15 77.8
MsG0280010459.01.T01 MTR_5g008070 28.571 252 148 9 77 302 80 325 1.50e-14 75.9
MsG0280010459.01.T01 MTR_3g028120 27.481 262 146 12 70 297 81 332 3.34e-14 74.7
MsG0280010459.01.T01 MTR_2g059460 29.921 254 133 12 79 297 60 303 4.26e-14 74.3
MsG0280010459.01.T01 MTR_5g044570 29.362 235 127 12 79 297 90 301 8.04e-14 73.6
MsG0280010459.01.T01 MTR_8g038280 24.479 384 226 16 75 426 83 434 1.01e-13 73.6
MsG0280010459.01.T01 MTR_6g085010 27.174 368 214 15 79 425 157 491 1.07e-13 73.6
MsG0280010459.01.T01 MTR_8g038250 25.266 376 209 16 77 426 85 414 4.53e-13 71.2
MsG0280010459.01.T01 MTR_8g039540 30.496 282 153 14 43 297 62 327 1.09e-12 70.1
MsG0280010459.01.T01 MTR_5g044770 26.855 283 160 13 46 297 59 325 3.97e-12 68.6
MsG0280010459.01.T01 MTR_8g096990 25.323 387 211 19 77 426 85 430 4.59e-12 68.2
MsG0280010459.01.T01 MTR_5g008150 26.502 283 154 14 52 298 39 303 4.73e-12 68.2
MsG0280010459.01.T01 MTR_0024s0040 28.137 263 143 12 67 297 56 304 5.28e-12 67.8
MsG0280010459.01.T01 MTR_8g038310 23.280 378 211 17 77 426 86 412 7.12e-12 67.4
MsG0280010459.01.T01 MTR_3g087780 23.908 435 238 18 41 425 59 450 1.12e-11 67.4
MsG0280010459.01.T01 MTR_1g037630 27.698 278 167 14 42 297 57 322 1.37e-11 66.6
MsG0280010459.01.T01 MTR_3g014290 27.365 296 175 14 27 297 30 310 1.39e-11 66.6
MsG0280010459.01.T01 MTR_4g007740 27.763 389 193 17 83 427 135 479 3.63e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010459.01.T01 AT5G22850 54.143 519 161 8 1 473 1 488 2.97e-174 499
MsG0280010459.01.T01 AT1G08210 47.683 518 195 9 2 476 7 491 9.31e-144 421
MsG0280010459.01.T01 AT1G08210 47.490 518 196 9 2 476 41 525 9.22e-143 420
MsG0280010459.01.T01 AT1G08210 47.582 517 197 8 2 476 55 539 6.79e-142 418
MsG0280010459.01.T01 AT1G08210 45.321 545 195 10 2 476 7 518 5.20e-138 407
MsG0280010459.01.T01 AT2G36670 46.589 513 191 10 11 476 27 503 8.43e-137 404
MsG0280010459.01.T01 AT2G36670 46.139 518 191 11 11 476 27 508 1.37e-134 398
MsG0280010459.01.T01 AT2G36670 46.712 441 157 9 78 476 33 437 3.03e-115 346
MsG0280010459.01.T01 AT2G36670 46.712 441 157 9 78 476 33 437 3.03e-115 346
MsG0280010459.01.T01 AT3G02740 31.579 513 274 13 5 475 8 485 2.10e-72 237
MsG0280010459.01.T01 AT5G36260 33.682 478 234 14 39 476 43 477 8.41e-72 236
MsG0280010459.01.T01 AT1G05840 32.347 473 243 12 7 438 14 450 1.33e-69 230
MsG0280010459.01.T01 AT3G02740 32.802 439 231 11 71 475 2 410 7.45e-65 215
MsG0280010459.01.T01 AT1G65240 32.215 447 204 12 40 436 40 437 3.54e-61 207
MsG0280010459.01.T01 AT3G42550 32.273 440 224 13 10 429 8 393 6.43e-50 176
MsG0280010459.01.T01 AT5G43100 27.529 425 239 13 32 426 33 418 6.30e-35 136
MsG0280010459.01.T01 AT5G43100 27.941 408 226 12 49 426 49 418 4.39e-34 135
MsG0280010459.01.T01 AT3G50050 27.586 406 231 12 51 426 65 437 7.70e-30 123
MsG0280010459.01.T01 AT1G44130 26.108 406 239 17 52 426 25 400 2.24e-26 111
MsG0280010459.01.T01 AT4G33490 25.412 425 232 20 53 434 38 420 1.91e-22 99.8
MsG0280010459.01.T01 AT1G49050 24.256 437 244 20 40 425 168 568 4.98e-21 96.7
MsG0280010459.01.T01 AT1G09750 30.333 300 162 14 74 334 99 390 9.89e-21 95.1
MsG0280010459.01.T01 AT1G77480 25.056 443 231 20 49 441 44 435 1.00e-20 95.1
MsG0280010459.01.T01 AT1G49050 23.604 394 228 17 78 425 29 395 3.65e-20 92.8
MsG0280010459.01.T01 AT4G35880 27.297 381 209 16 78 425 106 451 7.85e-20 92.8
MsG0280010459.01.T01 AT3G25700 28.829 333 181 14 26 314 36 356 8.77e-20 92.0
MsG0280010459.01.T01 AT1G77480 24.766 428 221 20 49 426 44 420 3.73e-19 90.1
MsG0280010459.01.T01 AT2G35615 29.132 357 187 15 1 303 1 345 1.25e-17 85.5
MsG0280010459.01.T01 AT3G51330 24.427 393 214 13 78 426 101 454 1.96e-17 85.1
MsG0280010459.01.T01 AT3G51330 24.490 392 213 13 78 425 101 453 2.27e-17 85.1
MsG0280010459.01.T01 AT4G30040 28.682 258 134 11 79 302 85 326 3.04e-17 84.3
MsG0280010459.01.T01 AT4G33490 28.571 266 155 13 53 297 35 286 1.97e-16 81.6
MsG0280010459.01.T01 AT1G49050 25.246 305 175 13 40 308 168 455 2.64e-16 81.6
MsG0280010459.01.T01 AT3G51340 24.869 382 217 17 78 425 102 447 6.73e-16 80.5
MsG0280010459.01.T01 AT3G51340 23.377 385 231 13 78 425 102 459 1.10e-15 80.1
MsG0280010459.01.T01 AT5G10770 26.804 388 203 18 77 426 130 474 3.34e-15 78.2
MsG0280010459.01.T01 AT4G30030 27.668 253 129 10 79 298 78 309 5.55e-15 77.4
MsG0280010459.01.T01 AT3G51350 25.515 388 213 16 78 425 101 452 6.78e-15 77.4
MsG0280010459.01.T01 AT3G51340 27.907 258 143 10 78 303 102 348 6.95e-15 76.6
MsG0280010459.01.T01 AT3G51340 27.907 258 143 10 78 303 102 348 9.36e-15 76.3
MsG0280010459.01.T01 AT3G59080 28.814 236 140 8 77 298 168 389 4.34e-14 74.7
MsG0280010459.01.T01 AT3G51360 23.356 441 269 17 36 439 41 449 4.61e-14 74.7
MsG0280010459.01.T01 AT3G59080 27.574 272 133 11 77 298 168 425 4.92e-14 74.7
MsG0280010459.01.T01 AT3G51360 23.356 441 269 17 36 439 51 459 4.94e-14 74.7
MsG0280010459.01.T01 AT3G51330 24.211 380 205 13 78 413 101 441 5.86e-14 74.3
MsG0280010459.01.T01 AT3G54400 28.571 245 144 10 75 297 84 319 6.82e-14 73.9
MsG0280010459.01.T01 AT1G64830 24.706 425 255 16 33 426 39 429 1.03e-13 73.6
MsG0280010459.01.T01 AT2G42980 26.471 272 146 9 77 303 158 420 4.74e-13 71.6
MsG0280010459.01.T01 AT3G51360 22.785 395 243 13 76 439 2 365 5.20e-13 71.2
MsG0280010459.01.T01 AT2G28030 27.519 258 140 14 74 303 56 294 2.73e-12 68.9
MsG0280010459.01.T01 AT1G25510 25.858 379 210 17 77 425 146 483 2.76e-12 69.3
MsG0280010459.01.T01 AT3G51360 25.559 313 180 14 36 311 51 347 4.45e-12 67.8
MsG0280010459.01.T01 AT2G28040 27.309 249 132 14 71 294 60 284 1.46e-11 66.6
MsG0280010459.01.T01 AT2G28220 25.177 282 163 14 36 292 28 286 1.57e-11 66.6
MsG0280010459.01.T01 AT2G28040 26.689 296 150 17 42 294 4 275 1.63e-11 66.2
MsG0280010459.01.T01 AT5G07030 29.644 253 144 11 74 302 110 352 3.56e-11 65.5
MsG0280010459.01.T01 AT3G51360 26.087 299 168 14 36 297 51 333 5.03e-11 65.1
MsG0280010459.01.T01 AT3G51360 26.087 299 168 14 36 297 41 323 5.76e-11 64.7
MsG0280010459.01.T01 AT3G51360 26.087 299 168 14 36 297 51 333 5.81e-11 64.7
MsG0280010459.01.T01 AT3G51360 26.087 299 168 14 36 297 41 323 7.61e-11 64.3

Find 119 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGTATATTTGTGATAAT+TGG 0.092997 2:-69935292 MsG0280010459.01.T01:three_prime_UTR
AGAGCAGTTGATGGTATATT+TGG 0.176792 2:-69937739 MsG0280010459.01.T01:CDS
GCGGCGACGGTGATTGTTTC+TGG 0.190594 2:-69939236 MsG0280010459.01.T01:CDS
AACAACCGCCATTATTAAAA+TGG 0.200788 2:+69939286 None:intergenic
AGCTTATGCTTCACTTTGTT+TGG 0.252595 2:-69936225 MsG0280010459.01.T01:CDS
GTTGATGGTATATTTGGATT+TGG 0.272872 2:-69937733 MsG0280010459.01.T01:CDS
TTTAGCTTTAGTGATTCTTT+AGG 0.275203 2:-69935219 MsG0280010459.01.T01:three_prime_UTR
GGTGGAGGAATTCTGGTTCT+TGG 0.284857 2:-69937622 MsG0280010459.01.T01:CDS
ATATTGCTTGTGTGCACAAT+AGG 0.294088 2:-69935251 MsG0280010459.01.T01:three_prime_UTR
TCATCACAAGGGATTGCTTC+TGG 0.311244 2:-69937679 MsG0280010459.01.T01:CDS
TAGCTCTGGTGGAGGAATTC+TGG 0.317072 2:-69937629 MsG0280010459.01.T01:CDS
GTGACACTGATTTGCAGCTT+TGG 0.321266 2:-69935387 MsG0280010459.01.T01:CDS
TGCTCTTACACTTTCCAGTA+TGG 0.324596 2:-69938017 MsG0280010459.01.T01:CDS
GGCGAACCTATGCATGTTAC+AGG 0.324691 2:-69936166 MsG0280010459.01.T01:CDS
TTGATGGTATATTTGGATTT+GGG 0.334758 2:-69937732 MsG0280010459.01.T01:CDS
CGTCGCCGCCGTTAACAATA+TGG 0.346244 2:+69939250 None:intergenic
GTTGTTGATTTCGCTGTTCA+TGG 0.357181 2:-69939092 MsG0280010459.01.T01:CDS
GTATTCTCTCATTGTCTTAG+AGG 0.362226 2:-69937655 MsG0280010459.01.T01:CDS
AGAGGCACCATTGTTGATTC+TGG 0.363062 2:-69937271 MsG0280010459.01.T01:CDS
TCCACAGACAAGTGGGTTGC+AGG 0.365572 2:-69938243 MsG0280010459.01.T01:intron
GGTCAAGGAGTAACAATTCT+AGG 0.373274 2:-69936102 MsG0280010459.01.T01:CDS
ATCAATGTTTCTTAATTGAC+AGG 0.391334 2:-69936985 MsG0280010459.01.T01:intron
CTGTACGAACTGTTGTTTCC+AGG 0.395143 2:-69937012 MsG0280010459.01.T01:CDS
GGTGCAGCAGTGTGGTGTAT+TGG 0.396578 2:-69936141 MsG0280010459.01.T01:CDS
CATTTGGATACTATCTTTGA+GGG 0.396905 2:-69937950 MsG0280010459.01.T01:CDS
ATTTGCACATAAAATTCAAC+TGG 0.400042 2:+69938317 None:intergenic
ACACTGGAAGTGATGTTCTC+TGG 0.404650 2:-69938292 MsG0280010459.01.T01:CDS
GTGTCCGATACGAATGCATT+TGG 0.413300 2:-69937966 MsG0280010459.01.T01:CDS
TTCCGCTACCATCTCCATAC+TGG 0.415108 2:+69938003 None:intergenic
AGTGGAGTATAAACTATGTT+AGG 0.415808 2:+69937586 None:intergenic
CAAAATTGTTGTTTACGATC+TGG 0.415968 2:-69935700 MsG0280010459.01.T01:CDS
TTGTCAAGTCTCCACTCTGC+TGG 0.418743 2:+69937770 None:intergenic
TATTGCTTGTGTGCACAATA+GGG 0.419892 2:-69935250 MsG0280010459.01.T01:three_prime_UTR
GCATTTGGATACTATCTTTG+AGG 0.424258 2:-69937951 MsG0280010459.01.T01:CDS
TTCTTGCAGTCTTCTTCAAA+TGG 0.427647 2:-69939116 MsG0280010459.01.T01:CDS
AGAGCACTGGTTGGTCTGAC+TGG 0.433140 2:+69938034 None:intergenic
TTGAATTACCCGACTTGGAA+TGG 0.436012 2:+69939059 None:intergenic
ATTCACCGCCATATTGTTAA+CGG 0.438617 2:-69939258 MsG0280010459.01.T01:CDS
GTTAATGTTTCTGCATCAAC+TGG 0.443678 2:-69935510 MsG0280010459.01.T01:CDS
ATCTCCGGCGACTCTAACAT+TGG 0.447696 2:-69939213 MsG0280010459.01.T01:CDS
TTCGATTGAATTACCCGACT+TGG 0.449976 2:+69939054 None:intergenic
GGAGATTTATCAAACATTGA+TGG 0.458467 2:-69937082 MsG0280010459.01.T01:CDS
TAAGAAACATTGATTTCCCC+TGG 0.458930 2:+69936994 None:intergenic
CCTTTGATCCATTCCAAGTC+GGG 0.461381 2:-69939067 MsG0280010459.01.T01:intron
CTGGTTGGTCTGACTGGAAC+AGG 0.461396 2:+69938040 None:intergenic
TGGTCGGTCAACGCATTGGA+TGG 0.464375 2:-69935680 MsG0280010459.01.T01:CDS
CACTGGAAGTGATGTTCTCT+GGG 0.471938 2:-69938291 MsG0280010459.01.T01:CDS
AAATCTGACAGAGCAGTTGA+TGG 0.478478 2:-69937748 MsG0280010459.01.T01:CDS
TCTGGTTCTTGGTGAGATTG+TGG 0.485463 2:-69937611 MsG0280010459.01.T01:CDS
CTTTCCAATGTTAGAGTCGC+CGG 0.495068 2:+69939209 None:intergenic
GGACTTACGTTGTCAAAGAC+AGG 0.495406 2:-69935426 MsG0280010459.01.T01:CDS
TTTAGCATACCTTGCAGAAG+AGG 0.496730 2:-69937242 MsG0280010459.01.T01:CDS
AGAGTTATTGTAAATGAAGA+AGG 0.499997 2:+69939406 None:intergenic
GGAGATGGTAGCGGAACCTC+AGG 0.500285 2:-69937996 MsG0280010459.01.T01:CDS
AAATGAAGAAGGAAAGGTTA+AGG 0.505148 2:+69939417 None:intergenic
GGTGATTGTTTCTGGATCTC+CGG 0.513289 2:-69939228 MsG0280010459.01.T01:CDS
ATCTCACAGCTCTCATCACA+AGG 0.517730 2:-69937691 MsG0280010459.01.T01:CDS
TATGTGAATGCTGGAGAGAT+AGG 0.521486 2:-69935471 MsG0280010459.01.T01:CDS
TATTGGCTTTCAGAAAAGCC+AGG 0.524879 2:-69936124 MsG0280010459.01.T01:CDS
GATCTGGTCGGTCAACGCAT+TGG 0.526025 2:-69935684 MsG0280010459.01.T01:CDS
CATATTGTTAACGGCGGCGA+CGG 0.527436 2:-69939249 MsG0280010459.01.T01:CDS
TCAAAGCTAGAGACTTGTTA+AGG 0.527714 2:-69939148 MsG0280010459.01.T01:CDS
ATGGATCGACTTGAAGTGCC+TGG 0.539684 2:+69937317 None:intergenic
TACACTTTCCAGTATGGAGA+TGG 0.539809 2:-69938011 MsG0280010459.01.T01:CDS
TGTAGGTTTAAGTTGTAATG+AGG 0.541851 2:+69937358 None:intergenic
GTTTCTGCATCAACTGGCAC+TGG 0.543133 2:-69935504 MsG0280010459.01.T01:CDS
GAGCATATCTGTCAACGGCC+AGG 0.546917 2:-69937335 MsG0280010459.01.T01:CDS
AAACTCACCGCATTGACAAA+GGG 0.548435 2:+69937211 None:intergenic
TGTCTTAGAGGAGATAGCTC+TGG 0.550304 2:-69937643 MsG0280010459.01.T01:CDS
TGTACGAACTGTTGTTTCCA+GGG 0.552563 2:-69937011 MsG0280010459.01.T01:CDS
ACCTTTGATCCATTCCAAGT+CGG 0.554032 2:-69939068 MsG0280010459.01.T01:CDS
AGCTCAATTCCATGATTCGT+CGG 0.558726 2:+69939179 None:intergenic
TATTGTAAATGAAGAAGGAA+AGG 0.559486 2:+69939411 None:intergenic
GAAACTCACCGCATTGACAA+AGG 0.562074 2:+69937210 None:intergenic
CGTTGACAGATATGCTCTGT+AGG 0.566016 2:+69937341 None:intergenic
AACGGTTGTCCACAGACAAG+TGG 0.572605 2:-69938251 MsG0280010459.01.T01:CDS
ACAACAGTTCGTACAGATTG+TGG 0.575931 2:+69937019 None:intergenic
ACCTGCAACCCACTTGTCTG+TGG 0.577779 2:+69938242 None:intergenic
CCCGACTTGGAATGGATCAA+AGG 0.580181 2:+69939067 None:intergenic
GGTCGGTCAACGCATTGGAT+GGG 0.580910 2:-69935679 MsG0280010459.01.T01:CDS
GAATTGTTACTCCTTGACCC+TGG 0.585059 2:+69936106 None:intergenic
TGCACATAAAATTCAACTGG+AGG 0.588358 2:+69938320 None:intergenic
ACTGGAAAGTGTAAGAGCAC+TGG 0.588565 2:+69938021 None:intergenic
GTGAATGCTGGAGAGATAGG+TGG 0.591140 2:-69935468 MsG0280010459.01.T01:CDS
ATTGTTGTTTACGATCTGGT+CGG 0.593128 2:-69935696 MsG0280010459.01.T01:CDS
GTCAGTTGTAGCTCTTGCAA+CGG 0.594137 2:-69938269 MsG0280010459.01.T01:CDS
AGAAGTGAATATGTGAATGC+TGG 0.596002 2:-69935480 MsG0280010459.01.T01:CDS
GTATCCAAATGCATTCGTAT+CGG 0.599298 2:+69937962 None:intergenic
GCATTTAGTGAGAAAACATA+CGG 0.599310 2:+69936192 None:intergenic
TTTCAGAAAAGCCAGGGTCA+AGG 0.603671 2:-69936117 MsG0280010459.01.T01:CDS
TTCCAGTATGGAGATGGTAG+CGG 0.610454 2:-69938005 MsG0280010459.01.T01:CDS
AGTGGAAATAGAATATACAT+AGG 0.610632 2:+69935311 None:intergenic
GATCATAAGCCTCTTCTGCA+AGG 0.611239 2:+69937233 None:intergenic
CAAGCAATATTGAAATAATG+TGG 0.612575 2:+69935264 None:intergenic
CTTAGAGGAGATAGCTCTGG+TGG 0.612995 2:-69937640 MsG0280010459.01.T01:CDS
GCTTACTGTGATGGAACAAG+TGG 0.613732 2:+69937568 None:intergenic
GACTTACGTTGTCAAAGACA+GGG 0.618524 2:-69935425 MsG0280010459.01.T01:CDS
GTACGAACTGTTGTTTCCAG+GGG 0.620127 2:-69937010 MsG0280010459.01.T01:CDS
GCGAACCTATGCATGTTACA+GGG 0.628810 2:-69936165 MsG0280010459.01.T01:CDS
GGAAGCAATTCTTTACATGA+CGG 0.630264 2:-69935447 MsG0280010459.01.T01:CDS
CACCACCCTGTAACATGCAT+AGG 0.631138 2:+69936160 None:intergenic
AGCTGCAAATCAGTGTCACA+AGG 0.640373 2:+69935391 None:intergenic
ATTGGCTTTCAGAAAAGCCA+GGG 0.649058 2:-69936123 MsG0280010459.01.T01:CDS
AGAGGAGATAGCTCTGGTGG+AGG 0.653271 2:-69937637 MsG0280010459.01.T01:CDS
TTTGCGACATCAAGCAACAG+AGG 0.660233 2:-69937289 MsG0280010459.01.T01:CDS
CTACAGAGCATATCTGTCAA+CGG 0.662152 2:-69937340 MsG0280010459.01.T01:CDS
CAATTATCACAAATATACAG+TGG 0.663333 2:+69935293 None:intergenic
GAAAGTGTAAGAGCACTGGT+TGG 0.666621 2:+69938025 None:intergenic
CGCCGCCGTTAACAATATGG+CGG 0.668764 2:+69939253 None:intergenic
ACGGTTGTCCACAGACAAGT+GGG 0.671786 2:-69938250 MsG0280010459.01.T01:CDS
AGTTGTTCCAGAATCAACAA+TGG 0.673134 2:+69937264 None:intergenic
CACCGCCATATTGTTAACGG+CGG 0.679075 2:-69939255 MsG0280010459.01.T01:CDS
ATCGGACACGTAATAGCCTG+AGG 0.681380 2:+69937980 None:intergenic
TTATGATCCCTTTGTCAATG+CGG 0.686569 2:-69937218 MsG0280010459.01.T01:intron
TACAGGGTGGTGCAGCAGTG+TGG 0.694411 2:-69936149 MsG0280010459.01.T01:CDS
AGTTGTAGTAACCAGCAGAG+TGG 0.699553 2:-69937781 MsG0280010459.01.T01:CDS
CAAGGAGTAACAATTCTAGG+AGG 0.710587 2:-69936099 MsG0280010459.01.T01:intron
AACCTATGCATGTTACAGGG+TGG 0.736850 2:-69936162 MsG0280010459.01.T01:CDS
TCTCACAGCTCTCATCACAA+GGG 0.756077 2:-69937690 MsG0280010459.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATAAACCATTTTAATAA+TGG - Chr2:69935336-69935355 MsG0280010459.01.T01:three_prime_UTR 10.0%
!! TAAAATCAAAATCAGATTAA+TGG + Chr2:69938017-69938036 None:intergenic 15.0%
!! TATCTTTAATTCTTCATTTA+TGG - Chr2:69935732-69935751 MsG0280010459.01.T01:intron 15.0%
!!! AATAGCAATTTTATTTTCAA+GGG + Chr2:69937087-69937106 None:intergenic 15.0%
!!! ATTTCACTTTTTTTGATAAA+AGG - Chr2:69935598-69935617 MsG0280010459.01.T01:intron 15.0%
!!! TAACTTAAAAGTATTATCTT+TGG + Chr2:69937946-69937965 None:intergenic 15.0%
!!! TAATAGCAATTTTATTTTCA+AGG + Chr2:69937088-69937107 None:intergenic 15.0%
!!! TGTATATCATTGTTTTTAAT+GGG + Chr2:69938763-69938782 None:intergenic 15.0%
!!! TTCATTTTGTTTTCTATTTT+TGG - Chr2:69935900-69935919 MsG0280010459.01.T01:intron 15.0%
!!! TTTCACTTTTTTTGATAAAA+GGG - Chr2:69935599-69935618 MsG0280010459.01.T01:intron 15.0%
!! AAACATTTCCTTCTAAATAT+TGG + Chr2:69938595-69938614 None:intergenic 20.0%
!! ATCTATATATACCACATAAT+CGG + Chr2:69937712-69937731 None:intergenic 20.0%
!! ATTGAACGAATCATTTATTA+CGG - Chr2:69938099-69938118 MsG0280010459.01.T01:intron 20.0%
!! TGTTCATAAATAATCTGTTA+GGG - Chr2:69938814-69938833 MsG0280010459.01.T01:intron 20.0%
!! TTGTTCATAAATAATCTGTT+AGG - Chr2:69938813-69938832 MsG0280010459.01.T01:intron 20.0%
!!! ATAAACCATTTTAATAATGG+CGG - Chr2:69935339-69935358 MsG0280010459.01.T01:three_prime_UTR 20.0%
!!! ATTTTAAATCCCAATAGTAA+TGG + Chr2:69938721-69938740 None:intergenic 20.0%
!!! GTGTATATCATTGTTTTTAA+TGG + Chr2:69938764-69938783 None:intergenic 20.0%
!!! TGTGTTTGATTTAAAATTGA+TGG - Chr2:69936246-69936265 MsG0280010459.01.T01:intron 20.0%
!!! TGTTTTTAATTAAACAATGC+AGG - Chr2:69939087-69939106 MsG0280010459.01.T01:CDS 20.0%
!!! TTACTTTTTAGTGTACATAA+AGG - Chr2:69938303-69938322 MsG0280010459.01.T01:CDS 20.0%
!!! TTATTGGTTTAATCTAATCT+CGG - Chr2:69936802-69936821 MsG0280010459.01.T01:intron 20.0%
!!! TTTTCTTTTTCATTTTTCTG+AGG - Chr2:69937898-69937917 MsG0280010459.01.T01:intron 20.0%
! AAAAAGTAACAGATTTCAGA+TGG + Chr2:69938292-69938311 None:intergenic 25.0%
! AAAATGATCACCATTACTAT+TGG - Chr2:69938708-69938727 MsG0280010459.01.T01:intron 25.0%
! AAATGATCACCATTACTATT+GGG - Chr2:69938709-69938728 MsG0280010459.01.T01:intron 25.0%
! AAATTCACTATATGTCTTTC+TGG + Chr2:69939008-69939027 None:intergenic 25.0%
! AAGATAGTTTCTATAAGTGA+TGG - Chr2:69935930-69935949 MsG0280010459.01.T01:intron 25.0%
! AGAGTTATTGTAAATGAAGA+AGG + Chr2:69935227-69935246 None:intergenic 25.0%
! AGATAAGATATAATGCAAAG+AGG + Chr2:69936207-69936226 None:intergenic 25.0%
! AGATATTTACACCAAATTCA+TGG - Chr2:69938341-69938360 MsG0280010459.01.T01:CDS 25.0%
! AGTGGAAATAGAATATACAT+AGG + Chr2:69939322-69939341 None:intergenic 25.0%
! ATCAACAATATCCATGAATT+TGG + Chr2:69938355-69938374 None:intergenic 25.0%
! ATCAATGTTTCTTAATTGAC+AGG - Chr2:69937645-69937664 MsG0280010459.01.T01:CDS 25.0%
! ATCATGAACCAATATTTAGA+AGG - Chr2:69938584-69938603 MsG0280010459.01.T01:intron 25.0%
! ATTGCTAAGTAATGCATAAA+AGG + Chr2:69937505-69937524 None:intergenic 25.0%
! ATTTGCACATAAAATTCAAC+TGG + Chr2:69936316-69936335 None:intergenic 25.0%
! CAAGCAATATTGAAATAATG+TGG + Chr2:69939369-69939388 None:intergenic 25.0%
! CAATAGAATTCTGTTGTATA+AGG + Chr2:69937858-69937877 None:intergenic 25.0%
! CAATTATCACAAATATACAG+TGG + Chr2:69939340-69939359 None:intergenic 25.0%
! CACTGTATATTTGTGATAAT+TGG - Chr2:69939338-69939357 MsG0280010459.01.T01:five_prime_UTR 25.0%
! CACTTATAGAAACCATATAT+TGG + Chr2:69935960-69935979 None:intergenic 25.0%
! GACATATAGTGAATTTCATA+TGG - Chr2:69939012-69939031 MsG0280010459.01.T01:intron 25.0%
! TACTTAAGTTAACGAAAAGA+AGG + Chr2:69937117-69937136 None:intergenic 25.0%
! TATCAAATATCAACCATTTC+AGG + Chr2:69936760-69936779 None:intergenic 25.0%
! TATTGTAAATGAAGAAGGAA+AGG + Chr2:69935222-69935241 None:intergenic 25.0%
! TCATACTAAAAGTTTATACG+TGG + Chr2:69938641-69938660 None:intergenic 25.0%
! TTACTTCACAGATTATTGAT+TGG - Chr2:69939461-69939480 MsG0280010459.01.T01:five_prime_UTR 25.0%
!! AACCCATTTTCAAATATTTC+AGG - Chr2:69937249-69937268 MsG0280010459.01.T01:CDS 25.0%
!! ACTCGATTTGCAATTATATT+TGG - Chr2:69938159-69938178 MsG0280010459.01.T01:intron 25.0%
!! TTGATGGTATATTTGGATTT+GGG - Chr2:69936898-69936917 MsG0280010459.01.T01:intron 25.0%
!!! AATCAAGTTGAATGCTTTTT+TGG - Chr2:69935660-69935679 MsG0280010459.01.T01:intron 25.0%
!!! ACTTTTTTTGATAAAAGGGT+TGG - Chr2:69935603-69935622 MsG0280010459.01.T01:intron 25.0%
!!! CTAAATTTTTGAGTTCAAAG+TGG + Chr2:69938564-69938583 None:intergenic 25.0%
!!! GAATGCTTTTTTGGATTTTT+AGG - Chr2:69935669-69935688 MsG0280010459.01.T01:CDS 25.0%
!!! GGTTTTAGTTTTGATGTTTT+TGG - Chr2:69935624-69935643 MsG0280010459.01.T01:intron 25.0%
!!! TAGTAATGGTGATCATTTTT+TGG + Chr2:69938707-69938726 None:intergenic 25.0%
!!! TCATAACATTATGTTGCTTT+AGG - Chr2:69937472-69937491 MsG0280010459.01.T01:intron 25.0%
!!! TGATTTAGTTTAGTTCTCTA+TGG - Chr2:69935868-69935887 MsG0280010459.01.T01:intron 25.0%
!!! TTTAGCTTTAGTGATTCTTT+AGG - Chr2:69939411-69939430 MsG0280010459.01.T01:five_prime_UTR 25.0%
!!! TTTTGTTTGGACAAGAATTA+AGG + Chr2:69935183-69935202 None:intergenic 25.0%
!!! TTTTTCATTTTTCTGAGGAT+TGG - Chr2:69937903-69937922 MsG0280010459.01.T01:intron 25.0%
!!! TTTTTTTCCTTCGTGTTTAT+TGG - Chr2:69936786-69936805 MsG0280010459.01.T01:intron 25.0%
AAATGAAGAAGGAAAGGTTA+AGG + Chr2:69935216-69935235 None:intergenic 30.0%
AACAACCGCCATTATTAAAA+TGG + Chr2:69935347-69935366 None:intergenic 30.0%
AACAGTGATCAATGGTTTAA+TGG - Chr2:69936454-69936473 MsG0280010459.01.T01:intron 30.0%
AGGCCTGAAATATTTGAAAA+TGG + Chr2:69937255-69937274 None:intergenic 30.0%
AGTGGAGTATAAACTATGTT+AGG + Chr2:69937047-69937066 None:intergenic 30.0%
ATAATTGCAAATCGAGTTTG+TGG + Chr2:69938156-69938175 None:intergenic 30.0%
ATACCACATAATCGGAAAAA+AGG + Chr2:69937704-69937723 None:intergenic 30.0%
ATGTAAAATGTCGTAACGAA+AGG + Chr2:69938066-69938085 None:intergenic 30.0%
CATTTGGATACTATCTTTGA+GGG - Chr2:69936680-69936699 MsG0280010459.01.T01:intron 30.0%
GATTAAACCAATAAACACGA+AGG + Chr2:69936796-69936815 None:intergenic 30.0%
GCATTTAGTGAGAAAACATA+CGG + Chr2:69938441-69938460 None:intergenic 30.0%
GGAGATTTATCAAACATTGA+TGG - Chr2:69937548-69937567 MsG0280010459.01.T01:intron 30.0%
GGCCTGAAATATTTGAAAAT+GGG + Chr2:69937254-69937273 None:intergenic 30.0%
GTGGTACTTGAGAATAATAT+CGG + Chr2:69938137-69938156 None:intergenic 30.0%
TAATCTCTTGTTCTGACAAA+AGG - Chr2:69936536-69936555 MsG0280010459.01.T01:intron 30.0%
TAGAATCTAATGCAATGTCA+AGG + Chr2:69939060-69939079 None:intergenic 30.0%
TAGTTGTATAACACTCTTGA+AGG + Chr2:69938851-69938870 None:intergenic 30.0%
TAGTTTCTATAAGTGATGGT+AGG - Chr2:69935934-69935953 MsG0280010459.01.T01:intron 30.0%
TGTAAGCAAAACTAACTTGA+AGG + Chr2:69936115-69936134 None:intergenic 30.0%
TGTTTCTTAATTGACAGGTT+AGG - Chr2:69937650-69937669 MsG0280010459.01.T01:CDS 30.0%
! AATCGGAAAAAAGGTACAAA+TGG + Chr2:69937695-69937714 None:intergenic 30.0%
! AGAAAGCAATTTAGAAGTGT+TGG + Chr2:69936086-69936105 None:intergenic 30.0%
! TGTTTTCTCACTAAATGCTA+CGG - Chr2:69938443-69938462 MsG0280010459.01.T01:intron 30.0%
! TTTTATGTGCAAATTGACAC+TGG - Chr2:69936322-69936341 MsG0280010459.01.T01:intron 30.0%
!! CAAAATTGTTGTTTACGATC+TGG - Chr2:69938930-69938949 MsG0280010459.01.T01:intron 30.0%
!! GTTGATGGTATATTTGGATT+TGG - Chr2:69936897-69936916 MsG0280010459.01.T01:intron 30.0%
!! TAAAATTGATGGACTATTGC+AGG - Chr2:69936257-69936276 MsG0280010459.01.T01:intron 30.0%
!! TATTTTACAAAGGTGCAGTT+AGG - Chr2:69936283-69936302 MsG0280010459.01.T01:intron 30.0%
!! TCTTTGACTTCTTTGTGTTT+TGG - Chr2:69938888-69938907 MsG0280010459.01.T01:intron 30.0%
!! TGTAGGTTTAAGTTGTAATG+AGG + Chr2:69937275-69937294 None:intergenic 30.0%
!! TTAGGTGGATTTTGAGTAAT+GGG - Chr2:69935687-69935706 MsG0280010459.01.T01:CDS 30.0%
!! TTTAGGTGGATTTTGAGTAA+TGG - Chr2:69935686-69935705 MsG0280010459.01.T01:CDS 30.0%
!!! AGGTTGTTGTTGTTTTTGTT+TGG + Chr2:69935196-69935215 None:intergenic 30.0%
!!! ATCATGTCATGTTTTTTGCT+TGG - Chr2:69937523-69937542 MsG0280010459.01.T01:intron 30.0%
!!! TGCTTTTTTGGATTTTTAGG+TGG - Chr2:69935672-69935691 MsG0280010459.01.T01:CDS 30.0%
AAAGATAAGCTGCACTAAGA+TGG + Chr2:69936183-69936202 None:intergenic 35.0%
AACTAATCAGAGAGATTGCA+AGG + Chr2:69938203-69938222 None:intergenic 35.0%
AATTGAGATTGCTCTCATCA+TGG + Chr2:69937141-69937160 None:intergenic 35.0%
ACTAAACACGGTAATACGAA+AGG + Chr2:69937761-69937780 None:intergenic 35.0%
AGATCTGTGTGTTTGTTCTT+AGG - Chr2:69937187-69937206 MsG0280010459.01.T01:intron 35.0%
AGCTTATGCTTCACTTTGTT+TGG - Chr2:69938405-69938424 MsG0280010459.01.T01:intron 35.0%
AGTTGTTCCAGAATCAACAA+TGG + Chr2:69937369-69937388 None:intergenic 35.0%
ATATTGCTTGTGTGCACAAT+AGG - Chr2:69939379-69939398 MsG0280010459.01.T01:five_prime_UTR 35.0%
ATTCACCGCCATATTGTTAA+CGG - Chr2:69935372-69935391 MsG0280010459.01.T01:exon 35.0%
CGAATCATTTATTACGGCAT+AGG - Chr2:69938105-69938124 MsG0280010459.01.T01:intron 35.0%
GAGAGATTGCAAGGATAATA+TGG + Chr2:69938194-69938213 None:intergenic 35.0%
GCATTTGGATACTATCTTTG+AGG - Chr2:69936679-69936698 MsG0280010459.01.T01:intron 35.0%
GGAAGCAATTCTTTACATGA+CGG - Chr2:69939183-69939202 MsG0280010459.01.T01:CDS 35.0%
GTATCCAAATGCATTCGTAT+CGG + Chr2:69936671-69936690 None:intergenic 35.0%
GTATTCTCTCATTGTCTTAG+AGG - Chr2:69936975-69936994 MsG0280010459.01.T01:intron 35.0%
GTTTACAGAACAGTGATCAA+TGG - Chr2:69936446-69936465 MsG0280010459.01.T01:intron 35.0%
TATCTCAGTGACACTAAACA+CGG + Chr2:69937773-69937792 None:intergenic 35.0%
TATTGCTTGTGTGCACAATA+GGG - Chr2:69939380-69939399 MsG0280010459.01.T01:five_prime_UTR 35.0%
TCTTAATTGACAGGTTAGGA+TGG - Chr2:69937654-69937673 MsG0280010459.01.T01:CDS 35.0%
TGCACATAAAATTCAACTGG+AGG + Chr2:69936313-69936332 None:intergenic 35.0%
TTATGATCCCTTTGTCAATG+CGG - Chr2:69937412-69937431 MsG0280010459.01.T01:intron 35.0%
TTCTTGCAGTCTTCTTCAAA+TGG - Chr2:69935514-69935533 MsG0280010459.01.T01:CDS 35.0%
! ATGATGTTGATGAACTCCTA+GGG + Chr2:69936513-69936532 None:intergenic 35.0%
! CGTTACGACATTTTACATGA+TGG - Chr2:69938068-69938087 MsG0280010459.01.T01:intron 35.0%
! GTTAATGTTTCTGCATCAAC+TGG - Chr2:69939120-69939139 MsG0280010459.01.T01:CDS 35.0%
! TTGCAGGCTCTATTTTACAA+AGG - Chr2:69936273-69936292 MsG0280010459.01.T01:intron 35.0%
!! AGAGCAGTTGATGGTATATT+TGG - Chr2:69936891-69936910 MsG0280010459.01.T01:intron 35.0%
!! ATTGTTGTTTACGATCTGGT+CGG - Chr2:69938934-69938953 MsG0280010459.01.T01:intron 35.0%
!! TAAGAAACATTGATTTCCCC+TGG + Chr2:69937639-69937658 None:intergenic 35.0%
!! TCAAAGCTAGAGACTTGTTA+AGG - Chr2:69935482-69935501 MsG0280010459.01.T01:CDS 35.0%
!!! CATTTTTCTGAGGATTGGTT+TGG - Chr2:69937908-69937927 MsG0280010459.01.T01:intron 35.0%
!!! GTACCTTTTTTCCGATTATG+TGG - Chr2:69937698-69937717 MsG0280010459.01.T01:CDS 35.0%
!!! TGTCATGTTTTTTGCTTGGT+TGG - Chr2:69937527-69937546 MsG0280010459.01.T01:intron 35.0%
AAAGCTCACCCAAAAACTAC+AGG + Chr2:69936731-69936750 None:intergenic 40.0%
AAATCTGACAGAGCAGTTGA+TGG - Chr2:69936882-69936901 MsG0280010459.01.T01:intron 40.0%
AAGTTAGAGTGAGTTGCAGT+TGG - Chr2:69937960-69937979 MsG0280010459.01.T01:CDS 40.0%
ACAACAGTTCGTACAGATTG+TGG + Chr2:69937614-69937633 None:intergenic 40.0%
ACCTTTGATCCATTCCAAGT+CGG - Chr2:69935562-69935581 MsG0280010459.01.T01:intron 40.0%
AGCTCAATTCCATGATTCGT+CGG + Chr2:69935454-69935473 None:intergenic 40.0%
AGTGATGGTAGGCCAATATA+TGG - Chr2:69935945-69935964 MsG0280010459.01.T01:intron 40.0%
CAAGGAGTAACAATTCTAGG+AGG - Chr2:69938531-69938550 MsG0280010459.01.T01:intron 40.0%
CTACAGAGCATATCTGTCAA+CGG - Chr2:69937290-69937309 MsG0280010459.01.T01:CDS 40.0%
CTGCTCGATTCACAAAGTAA+CGG + Chr2:69936831-69936850 None:intergenic 40.0%
CTTGATGTCGCAAAAACTGA+TGG + Chr2:69937335-69937354 None:intergenic 40.0%
GACTTACGTTGTCAAAGACA+GGG - Chr2:69939205-69939224 MsG0280010459.01.T01:CDS 40.0%
GCATCAACACTTCAGATTGA+AGG - Chr2:69936022-69936041 MsG0280010459.01.T01:intron 40.0%
GGTCAAGGAGTAACAATTCT+AGG - Chr2:69938528-69938547 MsG0280010459.01.T01:intron 40.0%
TACACTTTCCAGTATGGAGA+TGG - Chr2:69936619-69936638 MsG0280010459.01.T01:intron 40.0%
TGCTCTTACACTTTCCAGTA+TGG - Chr2:69936613-69936632 MsG0280010459.01.T01:intron 40.0%
TGTTGTATAAGGTAGTCCTG+TGG + Chr2:69937847-69937866 None:intergenic 40.0%
TTCGATTGAATTACCCGACT+TGG + Chr2:69935579-69935598 None:intergenic 40.0%
TTTAGCATACCTTGCAGAAG+AGG - Chr2:69937388-69937407 MsG0280010459.01.T01:intron 40.0%
! AAACTCACCGCATTGACAAA+GGG + Chr2:69937422-69937441 None:intergenic 40.0%
! ATTTGCGTAAGTGTCGTGTT+GGG - Chr2:69936154-69936173 MsG0280010459.01.T01:CDS 40.0%
! CAATGCGGTGAGTTTCTTTT+GGG - Chr2:69937427-69937446 MsG0280010459.01.T01:intron 40.0%
! CTTCAGCTCCTGTAGTTTTT+GGG - Chr2:69936720-69936739 MsG0280010459.01.T01:intron 40.0%
! GATGATGTTGATGAACTCCT+AGG + Chr2:69936514-69936533 None:intergenic 40.0%
! TCAATGCGGTGAGTTTCTTT+TGG - Chr2:69937426-69937445 MsG0280010459.01.T01:intron 40.0%
! TCTGACAAAAGGTGCAATAG+TGG - Chr2:69936547-69936566 MsG0280010459.01.T01:intron 40.0%
! TCTTCAGCTCCTGTAGTTTT+TGG - Chr2:69936719-69936738 MsG0280010459.01.T01:intron 40.0%
!! ATTGGCTTTCAGAAAAGCCA+GGG - Chr2:69938507-69938526 MsG0280010459.01.T01:intron 40.0%
!! GTTGTTGATTTCGCTGTTCA+TGG - Chr2:69935538-69935557 MsG0280010459.01.T01:intron 40.0%
!! TATTGGCTTTCAGAAAAGCC+AGG - Chr2:69938506-69938525 MsG0280010459.01.T01:intron 40.0%
!! TGTACGAACTGTTGTTTCCA+GGG - Chr2:69937619-69937638 MsG0280010459.01.T01:CDS 40.0%
!! TTGAATTACCCGACTTGGAA+TGG + Chr2:69935574-69935593 None:intergenic 40.0%
!! TTTTCAAGGGCTTACTGTGA+TGG + Chr2:69937074-69937093 None:intergenic 40.0%
!!! AGCTCAATTTTTTCGACCCT+AGG - Chr2:69936494-69936513 MsG0280010459.01.T01:intron 40.0%
!!! ATCTCTGGTTTTAAGACCAC+AGG - Chr2:69937828-69937847 MsG0280010459.01.T01:intron 40.0%
AACCTATGCATGTTACAGGG+TGG - Chr2:69938468-69938487 MsG0280010459.01.T01:intron 45.0%
ACACTGGAAGTGATGTTCTC+TGG - Chr2:69936338-69936357 MsG0280010459.01.T01:intron 45.0%
AGCTGCAAATCAGTGTCACA+AGG + Chr2:69939242-69939261 None:intergenic 45.0%
AGTTGTAGTAACCAGCAGAG+TGG - Chr2:69936849-69936868 MsG0280010459.01.T01:intron 45.0%
ATCTCACAGCTCTCATCACA+AGG - Chr2:69936939-69936958 MsG0280010459.01.T01:intron 45.0%
CAAGAAGGTAAAACAGGAGG+AGG + Chr2:69938672-69938691 None:intergenic 45.0%
CAAGTCAGTCTGAACTTTGC+TGG - Chr2:69937799-69937818 MsG0280010459.01.T01:intron 45.0%
CACTGGAAGTGATGTTCTCT+GGG - Chr2:69936339-69936358 MsG0280010459.01.T01:intron 45.0%
CCTTTGATCCATTCCAAGTC+GGG - Chr2:69935563-69935582 MsG0280010459.01.T01:intron 45.0%
CGTTGACAGATATGCTCTGT+AGG + Chr2:69937292-69937311 None:intergenic 45.0%
CTTTCCAATGTTAGAGTCGC+CGG + Chr2:69935424-69935443 None:intergenic 45.0%
GAATTGTTACTCCTTGACCC+TGG + Chr2:69938527-69938546 None:intergenic 45.0%
GAGCTTTCATGAGCCTGAAA+TGG - Chr2:69936744-69936763 MsG0280010459.01.T01:intron 45.0%
GATCATAAGCCTCTTCTGCA+AGG + Chr2:69937400-69937419 None:intergenic 45.0%
GCGAACCTATGCATGTTACA+GGG - Chr2:69938465-69938484 MsG0280010459.01.T01:intron 45.0%
GGACTTACGTTGTCAAAGAC+AGG - Chr2:69939204-69939223 MsG0280010459.01.T01:CDS 45.0%
GTCAGTTGTAGCTCTTGCAA+CGG - Chr2:69936361-69936380 MsG0280010459.01.T01:intron 45.0%
GTGTCCGATACGAATGCATT+TGG - Chr2:69936664-69936683 MsG0280010459.01.T01:intron 45.0%
TCATCACAAGGGATTGCTTC+TGG - Chr2:69936951-69936970 MsG0280010459.01.T01:intron 45.0%
TCTCACAGCTCTCATCACAA+GGG - Chr2:69936940-69936959 MsG0280010459.01.T01:intron 45.0%
TGTCTTAGAGGAGATAGCTC+TGG - Chr2:69936987-69937006 MsG0280010459.01.T01:CDS 45.0%
TTCCAGTATGGAGATGGTAG+CGG - Chr2:69936625-69936644 MsG0280010459.01.T01:intron 45.0%
TTTCAGAAAAGCCAGGGTCA+AGG - Chr2:69938513-69938532 MsG0280010459.01.T01:intron 45.0%
TTTGCGACATCAAGCAACAG+AGG - Chr2:69937341-69937360 MsG0280010459.01.T01:CDS 45.0%
! ACTGGAAAGTGTAAGAGCAC+TGG + Chr2:69936612-69936631 None:intergenic 45.0%
! AGAGCTTTTCCGACGAATCA+TGG - Chr2:69935442-69935461 MsG0280010459.01.T01:CDS 45.0%
! GAAACTCACCGCATTGACAA+AGG + Chr2:69937423-69937442 None:intergenic 45.0%
! GATTTGCGTAAGTGTCGTGT+TGG - Chr2:69936153-69936172 MsG0280010459.01.T01:CDS 45.0%
! GCTTACTGTGATGGAACAAG+TGG + Chr2:69937065-69937084 None:intergenic 45.0%
! GTCGTAACGAAAGGCACATT+AGG + Chr2:69938057-69938076 None:intergenic 45.0%
! GTGTGCACAATAGGGTTTTC+AGG - Chr2:69939388-69939407 MsG0280010459.01.T01:five_prime_UTR 45.0%
!! AGAGGCACCATTGTTGATTC+TGG - Chr2:69937359-69937378 MsG0280010459.01.T01:CDS 45.0%
!! CTGTACGAACTGTTGTTTCC+AGG - Chr2:69937618-69937637 MsG0280010459.01.T01:CDS 45.0%
!! GAAAGTGTAAGAGCACTGGT+TGG + Chr2:69936608-69936627 None:intergenic 45.0%
!! GCAAAGTTCAGACTGACTTG+AGG + Chr2:69937799-69937818 None:intergenic 45.0%
!! GGTGATTGTTTCTGGATCTC+CGG - Chr2:69935402-69935421 MsG0280010459.01.T01:CDS 45.0%
!! GTACGAACTGTTGTTTCCAG+GGG - Chr2:69937620-69937639 MsG0280010459.01.T01:CDS 45.0%
!! GTGACACTGATTTGCAGCTT+TGG - Chr2:69939243-69939262 MsG0280010459.01.T01:CDS 45.0%
!! TCTGGTTCTTGGTGAGATTG+TGG - Chr2:69937019-69937038 MsG0280010459.01.T01:CDS 45.0%
!!! ATCATTTTTTGGCCGAAGGC+GGG + Chr2:69938696-69938715 None:intergenic 45.0%
!!! GATCATTTTTTGGCCGAAGG+CGG + Chr2:69938697-69938716 None:intergenic 45.0%
!!! GGTGATCATTTTTTGGCCGA+AGG + Chr2:69938700-69938719 None:intergenic 45.0%
AACGGTTGTCCACAGACAAG+TGG - Chr2:69936379-69936398 MsG0280010459.01.T01:intron 50.0%
ACGGTTGTCCACAGACAAGT+GGG - Chr2:69936380-69936399 MsG0280010459.01.T01:intron 50.0%
ATCGGACACGTAATAGCCTG+AGG + Chr2:69936653-69936672 None:intergenic 50.0%
ATCTCCGGCGACTCTAACAT+TGG - Chr2:69935417-69935436 MsG0280010459.01.T01:CDS 50.0%
CACCACCCTGTAACATGCAT+AGG + Chr2:69938473-69938492 None:intergenic 50.0%
CACCGCCATATTGTTAACGG+CGG - Chr2:69935375-69935394 MsG0280010459.01.T01:exon 50.0%
CATATTGTTAACGGCGGCGA+CGG - Chr2:69935381-69935400 MsG0280010459.01.T01:CDS 50.0%
GGCGAACCTATGCATGTTAC+AGG - Chr2:69938464-69938483 MsG0280010459.01.T01:intron 50.0%
GGGCAAGAAGGTAAAACAGG+AGG + Chr2:69938675-69938694 None:intergenic 50.0%
GTCAGTCTGAACTTTGCTGG+TGG - Chr2:69937802-69937821 MsG0280010459.01.T01:intron 50.0%
GTTTCTGCATCAACTGGCAC+TGG - Chr2:69939126-69939145 MsG0280010459.01.T01:CDS 50.0%
TTCCGCTACCATCTCCATAC+TGG + Chr2:69936630-69936649 None:intergenic 50.0%
TTGTCAAGTCTCCACTCTGC+TGG + Chr2:69936863-69936882 None:intergenic 50.0%
!! ATGGATCGACTTGAAGTGCC+TGG + Chr2:69937316-69937335 None:intergenic 50.0%
!! CCCGACTTGGAATGGATCAA+AGG + Chr2:69935566-69935585 None:intergenic 50.0%
!! CTTAGAGGAGATAGCTCTGG+TGG - Chr2:69936990-69937009 MsG0280010459.01.T01:CDS 50.0%
!! GGTGGAGGAATTCTGGTTCT+TGG - Chr2:69937008-69937027 MsG0280010459.01.T01:CDS 50.0%
!! TAGCTCTGGTGGAGGAATTC+TGG - Chr2:69937001-69937020 MsG0280010459.01.T01:CDS 50.0%
!!! TCATTTTTTGGCCGAAGGCG+GGG + Chr2:69938695-69938714 None:intergenic 50.0%
ACCTGCAACCCACTTGTCTG+TGG + Chr2:69936391-69936410 None:intergenic 55.0%
CGCCGCCGTTAACAATATGG+CGG + Chr2:69935380-69935399 None:intergenic 55.0%
CGTCGCCGCCGTTAACAATA+TGG + Chr2:69935383-69935402 None:intergenic 55.0%
GAGCATATCTGTCAACGGCC+AGG - Chr2:69937295-69937314 MsG0280010459.01.T01:CDS 55.0%
GATCTGGTCGGTCAACGCAT+TGG - Chr2:69938946-69938965 MsG0280010459.01.T01:intron 55.0%
GCGGGGCAAGAAGGTAAAAC+AGG + Chr2:69938678-69938697 None:intergenic 55.0%
GGTCGGTCAACGCATTGGAT+GGG - Chr2:69938951-69938970 MsG0280010459.01.T01:intron 55.0%
GGTGCAGCAGTGTGGTGTAT+TGG - Chr2:69938489-69938508 MsG0280010459.01.T01:intron 55.0%
TGGTCGGTCAACGCATTGGA+TGG - Chr2:69938950-69938969 MsG0280010459.01.T01:intron 55.0%
TTACCTTCTTGCCCCGCCTT+CGG - Chr2:69938681-69938700 MsG0280010459.01.T01:intron 55.0%
! CTTTGCTGGTGGTGCATCTC+TGG - Chr2:69937813-69937832 MsG0280010459.01.T01:intron 55.0%
!! AGAGCACTGGTTGGTCTGAC+TGG + Chr2:69936599-69936618 None:intergenic 55.0%
!! AGAGGAGATAGCTCTGGTGG+AGG - Chr2:69936993-69937012 MsG0280010459.01.T01:CDS 55.0%
!! CTGGTTGGTCTGACTGGAAC+AGG + Chr2:69936593-69936612 None:intergenic 55.0%
!! TCCACAGACAAGTGGGTTGC+AGG - Chr2:69936387-69936406 MsG0280010459.01.T01:intron 55.0%
GCGGCGACGGTGATTGTTTC+TGG - Chr2:69935394-69935413 MsG0280010459.01.T01:CDS 60.0%
TACAGGGTGGTGCAGCAGTG+TGG - Chr2:69938481-69938500 MsG0280010459.01.T01:intron 60.0%
!! GGAGATGGTAGCGGAACCTC+AGG - Chr2:69936634-69936653 MsG0280010459.01.T01:intron 60.0%
TGGCCGAAGGCGGGGCAAGA+AGG + Chr2:69938687-69938706 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 69935171 69939481 69935171 ID=MsG0280010459.01;Name=MsG0280010459.01
Chr2 mRNA 69935171 69939481 69935171 ID=MsG0280010459.01.T01;Parent=MsG0280010459.01;Name=MsG0280010459.01.T01;_AED=0.25;_eAED=0.28;_QI=184|0.62|0.66|1|1|1|9|206|479
Chr2 exon 69935171 69935543 69935171 ID=MsG0280010459.01.T01:exon:26819;Parent=MsG0280010459.01.T01
Chr2 exon 69935667 69935738 69935667 ID=MsG0280010459.01.T01:exon:26818;Parent=MsG0280010459.01.T01
Chr2 exon 69936100 69936245 69936100 ID=MsG0280010459.01.T01:exon:26817;Parent=MsG0280010459.01.T01
Chr2 exon 69936986 69937131 69936986 ID=MsG0280010459.01.T01:exon:26816;Parent=MsG0280010459.01.T01
Chr2 exon 69937219 69937381 69937219 ID=MsG0280010459.01.T01:exon:26815;Parent=MsG0280010459.01.T01
Chr2 exon 69937574 69937801 69937574 ID=MsG0280010459.01.T01:exon:26814;Parent=MsG0280010459.01.T01
Chr2 exon 69937911 69938068 69937911 ID=MsG0280010459.01.T01:exon:26813;Parent=MsG0280010459.01.T01
Chr2 exon 69938244 69938373 69938244 ID=MsG0280010459.01.T01:exon:26812;Parent=MsG0280010459.01.T01
Chr2 exon 69939068 69939481 69939068 ID=MsG0280010459.01.T01:exon:26811;Parent=MsG0280010459.01.T01
Chr2 five_prime_UTR 69939298 69939481 69939298 ID=MsG0280010459.01.T01:five_prime_utr;Parent=MsG0280010459.01.T01
Chr2 CDS 69939068 69939297 69939068 ID=MsG0280010459.01.T01:cds;Parent=MsG0280010459.01.T01
Chr2 CDS 69938244 69938373 69938244 ID=MsG0280010459.01.T01:cds;Parent=MsG0280010459.01.T01
Chr2 CDS 69937911 69938068 69937911 ID=MsG0280010459.01.T01:cds;Parent=MsG0280010459.01.T01
Chr2 CDS 69937574 69937801 69937574 ID=MsG0280010459.01.T01:cds;Parent=MsG0280010459.01.T01
Chr2 CDS 69937219 69937381 69937219 ID=MsG0280010459.01.T01:cds;Parent=MsG0280010459.01.T01
Chr2 CDS 69936986 69937131 69936986 ID=MsG0280010459.01.T01:cds;Parent=MsG0280010459.01.T01
Chr2 CDS 69936100 69936245 69936100 ID=MsG0280010459.01.T01:cds;Parent=MsG0280010459.01.T01
Chr2 CDS 69935667 69935738 69935667 ID=MsG0280010459.01.T01:cds;Parent=MsG0280010459.01.T01
Chr2 CDS 69935377 69935543 69935377 ID=MsG0280010459.01.T01:cds;Parent=MsG0280010459.01.T01
Chr2 three_prime_UTR 69935171 69935376 69935171 ID=MsG0280010459.01.T01:three_prime_utr;Parent=MsG0280010459.01.T01
Gene Sequence

>MsG0280010459.01.T01

ATGGCGGTTGTTTTTATATTCACCGCCATATTGTTAACGGCGGCGACGGTGATTGTTTCTGGATCTCCGGCGACTCTAACATTGGAAAGAGCTTTTCCGACGAATCATGGAATTGAGCTGAATCAGCTCAAAGCTAGAGACTTGTTAAGGCATCGTAGATTCTTGCAGTCTTCTTCAAATGGTGTTGTTGATTTCGCTGTTCATGGTACCTTTGATCCATTCCAAGTCGGGCTCTATTTTACAAAGGTGCAGTTAGGTACTCCTCCAGTTGAATTTTATGTGCAAATTGACACTGGAAGTGATGTTCTCTGGGTCAGTTGTAGCTCTTGCAACGGTTGTCCACAGACAAGTGGGTTGCAGACGCAACCTGTTCCAGTCAGACCAACCAGTGCTCTTACACTTTCCAGTATGGAGATGGTAGCGGAACCTCAGGCTATTACGTGTCCGATACGAATGCATTTGGATACTATCTTTGAGGGATCTGTGTCTTCAAATTCTTCAGCTCCTGTAGTTTTTGGTTGTAGTAACCAGCAGAGTGGAGACTTGACAAAATCTGACAGAGCAGTTGATGGTATATTTGGATTTGGGCAACAGCAAATGTCTGTGATCTCACAGCTCTCATCACAAGGGATTGCTTCTGGAGTATTCTCTCATTGTCTTAGAGGAGATAGCTCTGGTGGAGGAATTCTGGTTCTTGGTGAGATTGTGGAGCCTAACATAGTTTATACTCCACTTGTTCCATCACAGCCTCATTACAACTTAAACCTACAGAGCATATCTGTCAACGGCCAGGCACTTCAAGTCGATCCATCAGTTTTTGCGACATCAAGCAACAGAGGCACCATTGTTGATTCTGGAACAACTTTAGCATACCTTGCAGAAGAGGCTTATGATCCCTTTGTCAATGCGCAATCATGTCATGTTTTTTGCTTGGTTGGAGATTTATCAAACATTGATGGTAAAATGATTTTTCAACGACTGCAGATTACAGCTACAATACCACAATCTGTACGAACTGTTGTTTCCAGGGGAAATCAATGTTTCTTAATTGACAGCTTATGCTTCACTTTGTTTGGTTTTTATATACCGTATGTTTTCTCACTAAATGCTACGGCGAACCTATGCATGTTACAGGGTGGTGCAGCAGTGTGGTGTATTGGCTTTCAGAAAAGCCAGGGTCAAGGAGTAACAATTCTAGGAGATCTCGTATTAAAAGACAAAATTGTTGTTTACGATCTGGTCGGTCAACGCATTGGATGGGCTAACTATGACTGTTCTTTGACAGTTAATGTTTCTGCATCAACTGGCACTGGCAGAAGTGAATATGTGAATGCTGGAGAGATAGGTGGAAGCAATTCTTTACATGACGGACTTACGTTGTCAAAGACAGGGTTTATAGCACTCCTTGTGACACTGATTTGCAGCTTTGGTTTTTTATAG

Protein sequence

>MsG0280010459.01.T01

MAVVFIFTAILLTAATVIVSGSPATLTLERAFPTNHGIELNQLKARDLLRHRRFLQSSSNGVVDFAVHGTFDPFQVGLYFTKVQLGTPPVEFYVQIDTGSDVLWVSCSSCNGCPQTSGLQTQPVPVRPTSALTLSSMEMVAEPQAITCPIRMHLDTIFEGSVSSNSSAPVVFGCSNQQSGDLTKSDRAVDGIFGFGQQQMSVISQLSSQGIASGVFSHCLRGDSSGGGILVLGEIVEPNIVYTPLVPSQPHYNLNLQSISVNGQALQVDPSVFATSSNRGTIVDSGTTLAYLAEEAYDPFVNAQSCHVFCLVGDLSNIDGKMIFQRLQITATIPQSVRTVVSRGNQCFLIDSLCFTLFGFYIPYVFSLNATANLCMLQGGAAVWCIGFQKSQGQGVTILGDLVLKDKIVVYDLVGQRIGWANYDCSLTVNVSASTGTGRSEYVNAGEIGGSNSLHDGLTLSKTGFIALLVTLICSFGFL*